Query psy3251
Match_columns 959
No_of_seqs 493 out of 2624
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1802|consensus 100.0 5E-232 1E-236 1917.7 65.6 860 26-956 2-861 (935)
2 TIGR00376 DNA helicase, putati 100.0 7E-81 1.5E-85 749.3 58.0 554 297-937 21-636 (637)
3 KOG1803|consensus 100.0 2.1E-81 4.5E-86 707.6 33.0 558 364-939 48-636 (649)
4 PF09416 UPF1_Zn_bind: RNA hel 100.0 3.2E-77 6.8E-82 575.1 10.1 152 100-251 1-152 (152)
5 KOG1805|consensus 100.0 8.1E-63 1.8E-67 576.5 29.3 390 502-934 667-1078(1100)
6 KOG1807|consensus 100.0 4.4E-53 9.6E-58 482.0 29.5 282 638-933 693-978 (1025)
7 COG1112 Superfamily I DNA and 100.0 3.1E-51 6.8E-56 509.9 36.9 697 124-943 1-761 (767)
8 KOG1804|consensus 100.0 1.5E-39 3.3E-44 386.0 12.0 375 519-938 326-726 (775)
9 KOG1801|consensus 100.0 7.1E-38 1.5E-42 385.4 25.9 294 642-937 513-815 (827)
10 PF13087 AAA_12: AAA domain; P 100.0 5E-36 1.1E-40 312.9 11.2 195 714-911 1-200 (200)
11 PF13086 AAA_11: AAA domain; P 100.0 9.8E-32 2.1E-36 285.2 17.3 202 504-706 1-235 (236)
12 KOG1806|consensus 100.0 7E-32 1.5E-36 316.1 13.7 425 501-933 735-1270(1320)
13 PRK11054 helD DNA helicase IV; 100.0 3.7E-27 8.1E-32 285.5 25.8 223 663-930 430-677 (684)
14 PRK10875 recD exonuclease V su 99.9 7.1E-27 1.5E-31 279.0 23.8 244 459-754 109-381 (615)
15 PRK11773 uvrD DNA-dependent he 99.9 6.6E-27 1.4E-31 288.4 23.0 303 503-839 8-365 (721)
16 TIGR01075 uvrD DNA helicase II 99.9 7.9E-27 1.7E-31 287.8 22.0 305 503-839 3-360 (715)
17 TIGR01447 recD exodeoxyribonuc 99.9 3.9E-26 8.5E-31 272.3 24.8 194 507-749 148-366 (586)
18 TIGR01073 pcrA ATP-dependent D 99.9 8.9E-26 1.9E-30 279.1 25.6 305 503-839 3-362 (726)
19 PRK10919 ATP-dependent DNA hel 99.9 1.2E-25 2.5E-30 274.4 23.3 239 504-753 2-294 (672)
20 TIGR01448 recD_rel helicase, p 99.9 2.1E-25 4.5E-30 273.1 22.6 300 503-914 322-702 (720)
21 TIGR01074 rep ATP-dependent DN 99.9 4.5E-24 9.8E-29 262.1 21.6 240 504-752 1-292 (664)
22 TIGR02768 TraA_Ti Ti-type conj 99.9 1.1E-21 2.5E-26 241.1 24.9 296 503-920 351-720 (744)
23 PRK13826 Dtr system oriT relax 99.9 4.3E-20 9.4E-25 229.9 25.6 308 503-932 380-783 (1102)
24 TIGR00609 recB exodeoxyribonuc 99.8 1E-19 2.2E-24 232.6 28.0 173 662-845 295-493 (1087)
25 PRK13889 conjugal transfer rel 99.8 6.9E-20 1.5E-24 227.4 24.7 314 503-938 345-750 (988)
26 TIGR02785 addA_Gpos recombinat 99.8 9.1E-20 2E-24 235.6 26.8 84 662-752 387-482 (1232)
27 COG0210 UvrD Superfamily I DNA 99.8 1.5E-19 3.2E-24 221.9 27.0 308 504-841 2-369 (655)
28 PRK13909 putative recombinatio 99.8 1.2E-18 2.6E-23 219.9 28.1 157 661-844 326-494 (910)
29 COG1074 RecB ATP-dependent exo 99.8 4.5E-19 9.7E-24 227.2 21.7 173 662-844 377-577 (1139)
30 PRK10876 recB exonuclease V su 99.8 8.5E-18 1.8E-22 215.6 25.8 170 662-842 376-572 (1181)
31 PF13604 AAA_30: AAA domain; P 99.8 7E-19 1.5E-23 183.8 12.6 174 504-756 1-179 (196)
32 PRK13709 conjugal transfer nic 99.7 3.5E-16 7.6E-21 202.7 24.9 173 503-755 966-1147(1747)
33 PRK14712 conjugal transfer nic 99.7 4.2E-16 9.1E-21 199.3 23.6 169 503-750 834-1011(1623)
34 COG3973 Superfamily I DNA and 99.7 9.4E-16 2E-20 175.0 19.4 207 662-909 527-745 (747)
35 PF01443 Viral_helicase1: Vira 99.6 2.6E-16 5.7E-21 168.2 8.9 50 856-907 184-233 (234)
36 TIGR02760 TraI_TIGR conjugativ 99.6 6.4E-15 1.4E-19 196.1 21.5 170 503-754 1018-1198(1960)
37 TIGR02784 addA_alphas double-s 99.6 3.6E-14 7.7E-19 183.9 21.2 168 662-839 390-603 (1141)
38 PF00580 UvrD-helicase: UvrD/R 99.5 2.7E-14 5.8E-19 158.7 11.4 64 505-570 1-67 (315)
39 PF09848 DUF2075: Uncharacteri 99.5 1.2E-13 2.7E-18 157.2 14.5 165 520-755 2-184 (352)
40 COG0507 RecD ATP-dependent exo 99.4 8.9E-14 1.9E-18 172.0 6.8 134 503-708 318-454 (696)
41 COG3972 Superfamily I DNA and 99.4 1.7E-12 3.6E-17 145.5 10.0 363 503-909 161-575 (660)
42 TIGR02760 TraI_TIGR conjugativ 99.3 2.3E-11 5E-16 162.6 21.7 168 504-742 429-601 (1960)
43 PF13245 AAA_19: Part of AAA d 99.3 1.1E-11 2.3E-16 109.5 7.6 57 512-568 2-62 (76)
44 PF05970 PIF1: PIF1-like helic 99.2 1.2E-11 2.6E-16 141.4 8.2 60 504-564 1-66 (364)
45 PF13361 UvrD_C: UvrD-like hel 99.1 2.8E-10 6E-15 128.0 8.7 95 730-844 1-100 (351)
46 PF02562 PhoH: PhoH-like prote 99.0 1.9E-09 4.1E-14 112.8 10.5 56 503-558 3-59 (205)
47 PRK10536 hypothetical protein; 98.9 5.2E-09 1.1E-13 112.3 11.7 63 499-561 54-116 (262)
48 KOG1804|consensus 98.8 1.3E-09 2.8E-14 131.7 2.5 392 502-940 118-551 (775)
49 TIGR02773 addB_Gpos ATP-depend 98.8 3.5E-07 7.7E-12 119.5 23.4 152 663-845 196-361 (1158)
50 smart00487 DEXDc DEAD-like hel 98.8 8.2E-08 1.8E-12 98.1 13.7 70 503-572 7-78 (201)
51 cd00046 DEXDc DEAD-like helica 98.6 2.8E-07 6.1E-12 88.4 11.1 52 521-572 2-54 (144)
52 PF00270 DEAD: DEAD/DEAH box h 98.4 1.9E-06 4E-11 87.0 12.2 66 506-571 1-67 (169)
53 PHA02558 uvsW UvsW helicase; P 98.4 3.1E-06 6.6E-11 101.3 14.2 70 503-572 113-182 (501)
54 PRK11634 ATP-dependent RNA hel 98.4 2.4E-05 5.2E-10 95.8 22.1 78 502-579 26-110 (629)
55 cd00268 DEADc DEAD-box helicas 98.3 7.2E-06 1.6E-10 85.7 14.0 69 503-571 20-92 (203)
56 PRK11776 ATP-dependent RNA hel 98.3 5.1E-05 1.1E-09 89.9 22.8 70 502-571 24-95 (460)
57 PF13538 UvrD_C_2: UvrD-like h 98.3 1.3E-07 2.9E-12 88.1 0.1 50 854-907 55-104 (104)
58 PRK11192 ATP-dependent RNA hel 98.2 1.8E-05 3.9E-10 93.0 14.2 68 503-570 22-95 (434)
59 PTZ00424 helicase 45; Provisio 98.1 1.7E-05 3.8E-10 91.9 13.1 69 503-571 49-119 (401)
60 PRK05580 primosome assembly pr 98.1 3E-05 6.6E-10 95.8 15.6 76 503-579 143-222 (679)
61 PRK02362 ski2-like helicase; P 98.1 1.2E-05 2.5E-10 100.8 10.0 77 501-578 20-100 (737)
62 COG1061 SSL2 DNA or RNA helica 98.0 2.5E-05 5.4E-10 92.0 12.0 65 503-571 35-103 (442)
63 PRK10917 ATP-dependent DNA hel 98.0 4.3E-05 9.3E-10 94.7 14.1 67 504-571 261-333 (681)
64 TIGR00643 recG ATP-dependent D 98.0 4.3E-05 9.3E-10 94.0 13.8 67 504-571 235-307 (630)
65 PF07652 Flavi_DEAD: Flaviviru 98.0 2.9E-05 6.2E-10 76.4 9.6 53 519-572 4-57 (148)
66 PRK10590 ATP-dependent RNA hel 98.0 6.2E-05 1.4E-09 89.1 13.9 70 502-571 21-98 (456)
67 PRK04837 ATP-dependent RNA hel 97.9 7.2E-05 1.6E-09 87.7 13.4 69 502-570 28-105 (423)
68 PRK00254 ski2-like helicase; P 97.9 8.5E-05 1.9E-09 92.9 14.8 76 502-578 21-101 (720)
69 PRK01172 ski2-like helicase; P 97.9 5.3E-05 1.2E-09 94.1 12.4 66 504-570 22-87 (674)
70 PF04851 ResIII: Type III rest 97.9 2E-05 4.4E-10 80.2 7.2 64 504-571 3-73 (184)
71 TIGR00603 rad25 DNA repair hel 97.9 0.00012 2.7E-09 89.6 14.5 65 503-571 254-321 (732)
72 PTZ00110 helicase; Provisional 97.8 0.00018 3.9E-09 87.0 14.6 71 501-571 149-226 (545)
73 PRK13766 Hef nuclease; Provisi 97.8 0.00014 3.1E-09 91.7 14.3 68 503-571 14-81 (773)
74 PRK01297 ATP-dependent RNA hel 97.8 0.00015 3.3E-09 86.3 12.9 70 502-571 107-185 (475)
75 TIGR03817 DECH_helic helicase/ 97.8 0.00017 3.7E-09 90.1 13.4 71 502-572 34-105 (742)
76 TIGR00580 mfd transcription-re 97.8 0.00026 5.6E-09 89.9 15.1 66 504-570 451-522 (926)
77 COG1702 PhoH Phosphate starvat 97.8 7.6E-05 1.6E-09 82.7 9.0 55 502-556 126-181 (348)
78 PHA02653 RNA helicase NPH-II; 97.7 0.00022 4.7E-09 87.6 13.4 76 495-570 154-244 (675)
79 PRK04537 ATP-dependent RNA hel 97.7 0.00018 3.9E-09 87.5 12.6 70 502-571 29-107 (572)
80 PRK11448 hsdR type I restricti 97.7 0.00014 3E-09 93.9 12.0 69 504-572 413-487 (1123)
81 PLN00206 DEAD-box ATP-dependen 97.7 0.00024 5.3E-09 85.4 13.0 70 501-570 140-218 (518)
82 COG1204 Superfamily II helicas 97.7 0.00016 3.5E-09 89.9 11.4 124 503-678 30-161 (766)
83 KOG1802|consensus 97.7 1.9E-05 4.1E-10 92.3 2.8 52 331-382 237-288 (935)
84 PRK09401 reverse gyrase; Revie 97.7 0.00025 5.4E-09 92.1 12.8 68 504-572 80-147 (1176)
85 TIGR01054 rgy reverse gyrase. 97.6 0.00027 5.9E-09 91.9 12.7 67 504-571 78-144 (1171)
86 TIGR00614 recQ_fam ATP-depende 97.6 0.00067 1.5E-08 80.7 14.8 75 502-580 9-83 (470)
87 COG1875 NYN ribonuclease and A 97.6 0.00027 5.9E-09 78.5 10.3 56 501-556 225-284 (436)
88 TIGR00348 hsdR type I site-spe 97.6 0.00038 8.3E-09 86.1 12.4 67 506-572 240-317 (667)
89 PRK10689 transcription-repair 97.6 0.00079 1.7E-08 87.4 15.5 66 504-570 600-671 (1147)
90 PRK14974 cell division protein 97.6 0.00068 1.5E-08 76.7 12.9 57 520-577 141-200 (336)
91 PRK14701 reverse gyrase; Provi 97.5 0.00078 1.7E-08 89.7 14.2 67 504-571 79-145 (1638)
92 TIGR01970 DEAH_box_HrpB ATP-de 97.5 0.00035 7.6E-09 87.7 10.0 61 509-570 6-67 (819)
93 TIGR00595 priA primosomal prot 97.4 0.00068 1.5E-08 81.2 11.3 55 523-578 1-56 (505)
94 PF05127 Helicase_RecD: Helica 97.4 2.5E-05 5.5E-10 80.0 -0.7 47 523-569 1-47 (177)
95 TIGR01389 recQ ATP-dependent D 97.4 0.0019 4E-08 79.2 15.4 73 503-579 12-84 (591)
96 PRK13767 ATP-dependent helicas 97.4 0.00082 1.8E-08 85.7 12.7 67 503-569 31-105 (876)
97 TIGR00604 rad3 DNA repair heli 97.4 0.0007 1.5E-08 84.5 11.2 65 507-571 13-83 (705)
98 PRK14712 conjugal transfer nic 97.4 0.0012 2.7E-08 86.7 13.7 63 504-567 281-346 (1623)
99 COG1198 PriA Primosomal protei 97.4 0.00069 1.5E-08 83.1 10.7 68 502-570 196-267 (730)
100 smart00489 DEXDc3 DEAD-like he 97.4 0.0015 3.3E-08 72.7 12.4 65 506-570 10-83 (289)
101 smart00488 DEXDc2 DEAD-like he 97.4 0.0015 3.3E-08 72.7 12.4 65 506-570 10-83 (289)
102 COG4096 HsdR Type I site-speci 97.4 0.00047 1E-08 83.6 8.6 68 504-571 165-238 (875)
103 COG0513 SrmB Superfamily II DN 97.3 0.016 3.5E-07 69.7 21.6 69 503-571 50-122 (513)
104 KOG0354|consensus 97.3 0.00091 2E-08 81.1 10.7 77 497-574 55-132 (746)
105 PRK11664 ATP-dependent RNA hel 97.3 0.00054 1.2E-08 86.1 9.0 61 509-570 9-70 (812)
106 PF00176 SNF2_N: SNF2 family N 97.3 0.00066 1.4E-08 75.0 8.6 140 509-699 2-174 (299)
107 PRK11057 ATP-dependent DNA hel 97.3 0.0025 5.5E-08 78.2 14.4 72 503-578 24-95 (607)
108 PRK04296 thymidine kinase; Pro 97.3 0.00071 1.5E-08 70.6 8.0 36 520-556 3-38 (190)
109 TIGR01587 cas3_core CRISPR-ass 97.3 0.0014 3.1E-08 74.9 11.1 50 522-571 2-52 (358)
110 KOG2108|consensus 97.3 0.00027 5.7E-09 85.8 5.1 65 504-570 13-80 (853)
111 COG1110 Reverse gyrase [DNA re 97.2 0.0021 4.5E-08 79.4 11.9 66 506-572 84-149 (1187)
112 KOG0952|consensus 97.2 0.0016 3.5E-08 80.3 10.8 77 502-578 108-198 (1230)
113 COG1111 MPH1 ERCC4-like helica 97.2 0.0017 3.8E-08 74.9 10.3 125 504-679 15-147 (542)
114 KOG0991|consensus 97.2 0.00056 1.2E-08 71.7 5.8 27 519-545 48-74 (333)
115 COG1200 RecG RecG-like helicas 97.1 0.048 1E-06 65.8 21.8 251 504-843 262-531 (677)
116 COG4098 comFA Superfamily II D 97.1 0.0026 5.7E-08 70.1 10.2 76 504-580 97-178 (441)
117 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0015 3.3E-08 79.5 9.2 59 512-570 8-68 (636)
118 PRK12899 secA preprotein trans 97.1 0.0068 1.5E-07 75.6 14.9 65 504-570 92-157 (970)
119 PF13173 AAA_14: AAA domain 97.1 0.0018 4E-08 62.9 8.2 41 519-561 2-42 (128)
120 TIGR02784 addA_alphas double-s 97.0 0.00079 1.7E-08 88.5 6.8 51 520-570 11-63 (1141)
121 cd01124 KaiC KaiC is a circadi 97.0 0.0014 3E-08 67.5 6.4 52 521-574 1-52 (187)
122 cd00009 AAA The AAA+ (ATPases 97.0 0.0024 5.2E-08 61.6 7.7 55 507-562 4-61 (151)
123 COG2256 MGS1 ATPase related to 96.9 0.0029 6.4E-08 71.5 9.0 43 663-706 104-148 (436)
124 TIGR01967 DEAH_box_HrpA ATP-de 96.9 0.0025 5.3E-08 82.7 8.9 62 509-570 71-133 (1283)
125 PRK08181 transposase; Validate 96.9 0.004 8.7E-08 68.5 9.2 54 501-555 84-141 (269)
126 PRK00771 signal recognition pa 96.8 0.009 1.9E-07 70.1 12.6 54 521-575 97-153 (437)
127 PRK12723 flagellar biosynthesi 96.8 0.01 2.3E-07 68.5 12.9 56 520-575 175-236 (388)
128 TIGR02621 cas3_GSU0051 CRISPR- 96.8 0.0045 9.8E-08 77.1 10.3 67 505-571 16-85 (844)
129 PF02399 Herpes_ori_bp: Origin 96.8 0.0029 6.2E-08 77.5 8.2 57 518-574 48-104 (824)
130 PRK13709 conjugal transfer nic 96.8 0.012 2.6E-07 78.8 14.6 62 505-567 414-478 (1747)
131 PRK12377 putative replication 96.8 0.0031 6.7E-08 68.5 7.7 49 506-555 80-136 (248)
132 TIGR03158 cas3_cyano CRISPR-as 96.8 0.013 2.7E-07 67.4 13.0 59 509-571 2-62 (357)
133 PRK04914 ATP-dependent helicas 96.8 0.015 3.2E-07 74.2 14.3 153 504-703 152-321 (956)
134 PHA03311 helicase-primase subu 96.7 0.003 6.6E-08 76.1 7.7 45 520-570 72-116 (828)
135 PRK07952 DNA replication prote 96.7 0.0039 8.5E-08 67.6 8.0 50 505-555 77-134 (244)
136 TIGR03714 secA2 accessory Sec 96.7 0.0069 1.5E-07 74.8 10.8 72 504-577 68-144 (762)
137 PRK12898 secA preprotein trans 96.7 0.011 2.4E-07 72.1 12.1 72 505-579 104-179 (656)
138 COG0552 FtsY Signal recognitio 96.7 0.0092 2E-07 66.4 10.3 57 521-578 141-200 (340)
139 PRK11131 ATP-dependent RNA hel 96.7 0.0042 9.2E-08 80.4 8.7 62 509-570 78-140 (1294)
140 KOG0989|consensus 96.7 0.0016 3.6E-08 71.1 4.3 27 519-545 57-83 (346)
141 PRK11747 dinG ATP-dependent DN 96.6 0.02 4.3E-07 71.5 14.2 60 507-567 28-97 (697)
142 PRK14958 DNA polymerase III su 96.6 0.0042 9E-08 74.5 7.8 35 511-545 26-64 (509)
143 PF00448 SRP54: SRP54-type pro 96.6 0.0045 9.8E-08 65.0 6.9 57 521-578 3-62 (196)
144 PRK14949 DNA polymerase III su 96.6 0.004 8.6E-08 77.6 7.2 26 520-545 39-64 (944)
145 TIGR01425 SRP54_euk signal rec 96.5 0.029 6.3E-07 65.5 13.6 56 520-576 101-159 (429)
146 smart00382 AAA ATPases associa 96.5 0.0019 4E-08 61.6 3.3 44 519-563 2-45 (148)
147 PRK06526 transposase; Provisio 96.5 0.0056 1.2E-07 66.9 7.3 52 502-554 78-132 (254)
148 COG1643 HrpA HrpA-like helicas 96.5 0.0081 1.8E-07 75.1 9.4 62 509-570 54-116 (845)
149 PRK12323 DNA polymerase III su 96.5 0.0053 1.2E-07 74.2 7.5 45 663-707 124-174 (700)
150 PRK14956 DNA polymerase III su 96.5 0.0059 1.3E-07 71.8 7.6 25 521-545 42-66 (484)
151 PRK07003 DNA polymerase III su 96.4 0.0076 1.7E-07 73.9 8.4 24 521-544 40-63 (830)
152 PRK07994 DNA polymerase III su 96.4 0.007 1.5E-07 74.0 8.1 46 662-707 118-169 (647)
153 PF06745 KaiC: KaiC; InterPro 96.4 0.0059 1.3E-07 65.2 6.4 55 519-574 19-73 (226)
154 COG1201 Lhr Lhr-like helicases 96.3 0.02 4.3E-07 71.2 11.3 68 503-570 21-95 (814)
155 COG1484 DnaC DNA replication p 96.3 0.0059 1.3E-07 66.7 6.0 51 505-556 84-141 (254)
156 COG4889 Predicted helicase [Ge 96.3 0.028 6E-07 68.5 11.8 62 503-568 160-226 (1518)
157 PRK13342 recombination factor 96.3 0.011 2.3E-07 69.3 8.6 35 663-698 92-128 (413)
158 TIGR00064 ftsY signal recognit 96.3 0.01 2.2E-07 65.5 7.8 57 520-577 73-132 (272)
159 PRK07246 bifunctional ATP-depe 96.3 0.026 5.7E-07 71.5 12.3 61 504-566 245-309 (820)
160 PRK04195 replication factor C 96.3 0.02 4.4E-07 68.4 10.7 39 505-543 18-63 (482)
161 PRK14088 dnaA chromosomal repl 96.2 0.038 8.3E-07 65.2 12.6 36 521-556 132-168 (440)
162 KOG0744|consensus 96.2 0.003 6.4E-08 69.4 2.9 27 519-545 177-203 (423)
163 PF13401 AAA_22: AAA domain; P 96.2 0.0041 8.9E-08 60.0 3.6 51 519-569 4-59 (131)
164 PLN03137 ATP-dependent DNA hel 96.2 0.044 9.6E-07 70.1 13.4 72 504-579 460-531 (1195)
165 KOG2108|consensus 96.2 0.00042 9.1E-09 84.2 -4.1 53 855-907 675-740 (853)
166 PHA03333 putative ATPase subun 96.2 0.071 1.5E-06 64.7 14.3 65 506-570 174-238 (752)
167 PRK14952 DNA polymerase III su 96.1 0.013 2.8E-07 71.1 8.3 24 521-544 37-60 (584)
168 PRK14960 DNA polymerase III su 96.1 0.0087 1.9E-07 72.6 6.6 25 520-544 38-62 (702)
169 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.049 1.1E-06 55.2 11.0 59 519-580 2-64 (159)
170 KOG0330|consensus 96.1 0.023 5E-07 63.8 9.2 144 504-697 83-244 (476)
171 PRK05973 replicative DNA helic 96.1 0.0095 2.1E-07 64.3 6.2 54 519-574 64-117 (237)
172 PF00004 AAA: ATPase family as 96.1 0.004 8.7E-08 59.8 3.1 22 522-543 1-22 (132)
173 COG3854 SpoIIIAA ncharacterize 96.1 0.044 9.4E-07 58.0 10.6 37 522-558 140-180 (308)
174 PRK10416 signal recognition pa 96.1 0.014 3.1E-07 65.8 7.8 57 520-577 115-174 (318)
175 PRK05563 DNA polymerase III su 96.1 0.014 3E-07 70.9 8.2 25 520-544 39-63 (559)
176 TIGR00708 cobA cob(I)alamin ad 96.1 0.084 1.8E-06 54.2 12.5 58 519-580 5-66 (173)
177 PRK08116 hypothetical protein; 96.1 0.019 4.2E-07 63.2 8.5 34 521-555 116-149 (268)
178 PRK10867 signal recognition pa 96.1 0.015 3.2E-07 68.1 7.9 57 521-577 102-161 (433)
179 PRK08084 DNA replication initi 96.0 0.019 4E-07 62.1 8.1 52 504-556 27-81 (235)
180 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.01 2.2E-07 64.2 5.9 54 519-574 21-74 (237)
181 PRK14087 dnaA chromosomal repl 96.0 0.084 1.8E-06 62.5 14.1 37 520-556 142-179 (450)
182 PF01695 IstB_IS21: IstB-like 96.0 0.011 2.3E-07 61.2 5.8 45 519-569 47-91 (178)
183 PRK14969 DNA polymerase III su 96.0 0.024 5.1E-07 68.4 9.4 36 509-544 24-63 (527)
184 cd01131 PilT Pilus retraction 96.0 0.0079 1.7E-07 63.2 4.7 37 519-555 1-37 (198)
185 PRK06893 DNA replication initi 96.0 0.022 4.8E-07 61.2 8.2 36 519-555 39-74 (229)
186 PLN03142 Probable chromatin-re 96.0 0.075 1.6E-06 68.3 14.1 149 504-699 169-331 (1033)
187 cd01129 PulE-GspE PulE/GspE Th 95.9 0.012 2.7E-07 64.6 6.0 50 504-554 63-114 (264)
188 PRK09200 preprotein translocas 95.9 0.059 1.3E-06 67.3 12.3 69 506-577 80-152 (790)
189 PRK08533 flagellar accessory p 95.9 0.013 2.9E-07 63.0 6.0 53 519-573 24-76 (230)
190 smart00763 AAA_PrkA PrkA AAA d 95.9 0.025 5.5E-07 64.3 8.4 73 473-545 22-104 (361)
191 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.012 2.7E-07 64.4 5.7 39 519-558 36-74 (259)
192 PRK09183 transposase/IS protei 95.8 0.019 4.1E-07 63.0 7.2 53 502-555 82-137 (259)
193 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.015 3.3E-07 62.0 6.2 54 519-574 16-69 (224)
194 cd03115 SRP The signal recogni 95.8 0.02 4.3E-07 58.4 6.8 55 521-576 2-59 (173)
195 COG1205 Distinct helicase fami 95.7 0.061 1.3E-06 68.3 12.1 67 505-571 71-138 (851)
196 TIGR00959 ffh signal recogniti 95.7 0.024 5.2E-07 66.4 7.9 57 521-577 101-160 (428)
197 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.03 6.4E-07 59.6 8.1 51 505-556 21-74 (226)
198 TIGR00963 secA preprotein tran 95.7 0.066 1.4E-06 66.1 11.9 68 508-578 60-131 (745)
199 COG2805 PilT Tfp pilus assembl 95.7 0.011 2.4E-07 64.7 4.7 35 518-552 124-158 (353)
200 cd01120 RecA-like_NTPases RecA 95.7 0.015 3.3E-07 57.6 5.4 41 521-562 1-41 (165)
201 KOG0987|consensus 95.7 0.025 5.4E-07 68.4 8.2 60 503-564 116-181 (540)
202 PRK08691 DNA polymerase III su 95.7 0.027 5.9E-07 68.9 8.4 25 521-545 40-64 (709)
203 PRK14722 flhF flagellar biosyn 95.7 0.024 5.3E-07 65.0 7.7 57 519-575 137-197 (374)
204 PRK08903 DnaA regulatory inact 95.7 0.03 6.4E-07 59.9 7.9 50 504-554 23-76 (227)
205 PRK14964 DNA polymerase III su 95.7 0.031 6.7E-07 66.5 8.6 24 521-544 37-60 (491)
206 PF13191 AAA_16: AAA ATPase do 95.6 0.024 5.2E-07 57.9 6.6 40 507-546 6-51 (185)
207 PRK08727 hypothetical protein; 95.6 0.063 1.4E-06 57.9 10.1 35 520-555 42-76 (233)
208 TIGR03499 FlhF flagellar biosy 95.6 0.026 5.7E-07 62.7 7.3 46 521-566 196-245 (282)
209 PRK13833 conjugal transfer pro 95.6 0.023 5E-07 64.1 6.8 49 505-553 129-179 (323)
210 PRK13894 conjugal transfer ATP 95.6 0.023 5E-07 64.1 6.8 53 505-557 133-187 (319)
211 PRK13104 secA preprotein trans 95.6 0.038 8.2E-07 69.2 9.0 47 523-570 99-145 (896)
212 PRK06067 flagellar accessory p 95.6 0.021 4.5E-07 61.5 6.1 55 519-575 25-79 (234)
213 PRK14948 DNA polymerase III su 95.6 0.026 5.6E-07 69.3 7.6 26 520-545 39-64 (620)
214 PRK04328 hypothetical protein; 95.6 0.022 4.8E-07 62.0 6.4 54 519-574 23-76 (249)
215 PRK13341 recombination factor 95.6 0.023 5E-07 70.7 7.2 36 663-699 109-146 (725)
216 cd01122 GP4d_helicase GP4d_hel 95.5 0.021 4.6E-07 62.6 6.2 51 519-570 30-80 (271)
217 PF13481 AAA_25: AAA domain; P 95.5 0.022 4.8E-07 59.0 5.9 51 519-570 32-91 (193)
218 PRK07133 DNA polymerase III su 95.5 0.039 8.5E-07 68.1 8.8 37 509-545 26-66 (725)
219 TIGR02655 circ_KaiC circadian 95.5 0.021 4.5E-07 68.3 6.3 55 519-574 21-75 (484)
220 PRK08451 DNA polymerase III su 95.5 0.043 9.2E-07 65.9 8.8 25 521-545 38-62 (535)
221 PRK06851 hypothetical protein; 95.5 0.011 2.4E-07 67.5 3.8 46 519-565 30-77 (367)
222 PRK14951 DNA polymerase III su 95.5 0.025 5.4E-07 69.1 6.9 25 521-545 40-64 (618)
223 PF13207 AAA_17: AAA domain; P 95.4 0.012 2.7E-07 56.0 3.4 22 522-543 2-23 (121)
224 PLN03025 replication factor C 95.4 0.019 4.1E-07 64.9 5.3 40 506-545 18-60 (319)
225 TIGR02782 TrbB_P P-type conjug 95.4 0.027 5.9E-07 63.0 6.5 52 505-556 117-170 (299)
226 TIGR02774 rexB_recomb ATP-depe 95.4 0.19 4.1E-06 65.7 14.9 155 663-845 185-349 (1076)
227 PRK11889 flhF flagellar biosyn 95.4 0.034 7.5E-07 63.8 7.2 56 520-576 242-300 (436)
228 COG0467 RAD55 RecA-superfamily 95.4 0.023 4.9E-07 62.2 5.7 46 519-565 23-68 (260)
229 PRK06921 hypothetical protein; 95.4 0.041 8.9E-07 60.6 7.7 38 519-556 117-154 (266)
230 PF05729 NACHT: NACHT domain 95.4 0.014 3.1E-07 58.2 3.8 27 520-546 1-27 (166)
231 TIGR02928 orc1/cdc6 family rep 95.3 0.016 3.6E-07 66.3 4.7 40 506-545 20-66 (365)
232 TIGR02655 circ_KaiC circadian 95.3 0.023 5E-07 67.9 6.0 54 519-574 263-316 (484)
233 TIGR02881 spore_V_K stage V sp 95.3 0.019 4E-07 63.0 4.8 26 520-545 43-68 (261)
234 PRK05703 flhF flagellar biosyn 95.3 0.038 8.1E-07 64.9 7.5 56 520-575 222-281 (424)
235 PRK09112 DNA polymerase III su 95.3 0.065 1.4E-06 61.4 9.2 26 521-546 47-72 (351)
236 cd00984 DnaB_C DnaB helicase C 95.3 0.032 6.9E-07 60.1 6.3 50 519-569 13-62 (242)
237 PF05496 RuvB_N: Holliday junc 95.3 0.012 2.5E-07 62.6 2.8 35 663-697 101-137 (233)
238 KOG0922|consensus 95.3 0.04 8.6E-07 65.9 7.5 57 514-570 61-117 (674)
239 KOG0743|consensus 95.2 0.0099 2.1E-07 68.4 2.3 23 521-543 237-259 (457)
240 PRK09694 helicase Cas3; Provis 95.2 0.053 1.2E-06 68.7 9.0 67 504-570 286-353 (878)
241 PF02689 Herpes_Helicase: Heli 95.2 0.063 1.4E-06 65.2 9.0 48 517-570 57-104 (818)
242 PRK06835 DNA replication prote 95.2 0.038 8.2E-07 62.7 6.8 37 519-556 183-219 (329)
243 KOG0338|consensus 95.2 0.43 9.2E-06 55.7 15.0 69 806-879 416-488 (691)
244 PHA03368 DNA packaging termina 95.2 0.28 6.1E-06 59.5 14.2 58 513-570 248-306 (738)
245 KOG0335|consensus 95.1 0.058 1.3E-06 62.9 8.2 68 504-571 96-175 (482)
246 PRK14965 DNA polymerase III su 95.1 0.055 1.2E-06 66.1 8.4 38 508-545 23-64 (576)
247 PRK05642 DNA replication initi 95.1 0.068 1.5E-06 57.7 8.2 36 520-556 46-81 (234)
248 TIGR02533 type_II_gspE general 95.1 0.026 5.6E-07 67.4 5.4 41 504-544 225-267 (486)
249 KOG0333|consensus 95.1 0.88 1.9E-05 53.4 17.2 80 501-580 264-358 (673)
250 PRK10436 hypothetical protein; 95.1 0.028 6.1E-07 66.5 5.7 41 504-544 201-243 (462)
251 PRK12724 flagellar biosynthesi 95.1 0.05 1.1E-06 63.2 7.5 55 520-574 224-281 (432)
252 PF07728 AAA_5: AAA domain (dy 95.1 0.025 5.4E-07 55.4 4.4 22 522-543 2-23 (139)
253 PF02492 cobW: CobW/HypB/UreG, 95.0 0.046 9.9E-07 56.4 6.4 57 520-580 1-59 (178)
254 TIGR01650 PD_CobS cobaltochela 95.0 0.049 1.1E-06 61.3 7.0 41 503-543 47-88 (327)
255 TIGR02237 recomb_radB DNA repa 95.0 0.036 7.9E-07 58.3 5.6 39 519-558 12-50 (209)
256 PRK05707 DNA polymerase III su 95.0 0.074 1.6E-06 60.3 8.3 45 663-707 106-156 (328)
257 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.04 8.6E-07 59.0 5.9 53 519-573 20-72 (229)
258 KOG0951|consensus 94.9 0.041 8.9E-07 69.5 6.5 78 503-580 308-400 (1674)
259 TIGR02640 gas_vesic_GvpN gas v 94.9 0.029 6.2E-07 61.6 4.8 24 518-541 20-43 (262)
260 cd01394 radB RadB. The archaea 94.9 0.032 6.9E-07 59.2 4.9 36 519-555 19-54 (218)
261 PRK14873 primosome assembly pr 94.8 0.14 3E-06 63.3 10.8 55 523-578 164-220 (665)
262 PF13671 AAA_33: AAA domain; P 94.8 0.019 4.1E-07 56.3 2.7 21 521-541 1-21 (143)
263 TIGR02525 plasmid_TraJ plasmid 94.8 0.06 1.3E-06 62.0 7.0 48 505-554 137-185 (372)
264 PRK00411 cdc6 cell division co 94.7 0.061 1.3E-06 62.4 7.1 40 507-546 36-82 (394)
265 PRK09361 radB DNA repair and r 94.7 0.039 8.4E-07 58.9 5.0 38 519-557 23-60 (225)
266 cd00544 CobU Adenosylcobinamid 94.7 0.04 8.7E-07 56.5 4.8 46 521-570 1-46 (169)
267 TIGR02538 type_IV_pilB type IV 94.7 0.047 1E-06 66.5 6.2 40 504-543 299-340 (564)
268 PF06309 Torsin: Torsin; Inte 94.7 0.046 9.9E-07 53.0 4.8 28 519-546 52-80 (127)
269 PRK12726 flagellar biosynthesi 94.7 0.055 1.2E-06 62.0 6.2 56 519-575 206-264 (407)
270 COG1444 Predicted P-loop ATPas 94.6 0.39 8.4E-06 59.4 13.8 67 504-570 211-283 (758)
271 PRK12402 replication factor C 94.6 0.043 9.2E-07 62.1 5.4 41 506-546 20-63 (337)
272 TIGR02688 conserved hypothetic 94.6 0.23 4.9E-06 57.7 11.0 28 519-546 209-237 (449)
273 TIGR02880 cbbX_cfxQ probable R 94.5 0.029 6.3E-07 62.4 3.7 26 521-546 60-85 (284)
274 TIGR02012 tigrfam_recA protein 94.5 0.064 1.4E-06 60.5 6.3 44 519-563 55-98 (321)
275 TIGR01420 pilT_fam pilus retra 94.5 0.033 7.2E-07 63.6 4.1 37 519-555 122-158 (343)
276 TIGR00635 ruvB Holliday juncti 94.5 0.046 1E-06 61.1 5.1 24 520-543 31-54 (305)
277 CHL00181 cbbX CbbX; Provisiona 94.5 0.041 9E-07 61.2 4.7 26 521-546 61-86 (287)
278 PF13238 AAA_18: AAA domain; P 94.4 0.035 7.6E-07 53.0 3.3 22 522-543 1-22 (129)
279 PHA00729 NTP-binding motif con 94.3 0.034 7.3E-07 59.4 3.4 24 521-544 19-42 (226)
280 PRK08939 primosomal protein Dn 94.3 0.058 1.3E-06 60.6 5.4 35 521-556 158-192 (306)
281 COG2804 PulE Type II secretory 94.3 0.071 1.5E-06 62.6 6.1 42 504-545 241-284 (500)
282 KOG2028|consensus 94.3 0.052 1.1E-06 60.7 4.8 59 509-568 149-210 (554)
283 PRK09302 circadian clock prote 94.3 0.071 1.5E-06 64.3 6.4 55 519-574 31-85 (509)
284 PRK11823 DNA repair protein Ra 94.2 0.072 1.6E-06 63.0 6.3 53 519-573 80-132 (446)
285 PRK09751 putative ATP-dependen 94.2 0.13 2.8E-06 68.3 9.1 46 524-569 1-58 (1490)
286 cd02019 NK Nucleoside/nucleoti 94.2 0.075 1.6E-06 45.9 4.8 22 522-543 2-23 (69)
287 cd01130 VirB11-like_ATPase Typ 94.2 0.061 1.3E-06 55.8 5.0 49 504-554 9-58 (186)
288 cd01121 Sms Sms (bacterial rad 94.2 0.079 1.7E-06 61.1 6.2 53 519-573 82-134 (372)
289 PRK11331 5-methylcytosine-spec 94.1 0.069 1.5E-06 62.5 5.7 40 505-544 179-219 (459)
290 PRK00149 dnaA chromosomal repl 94.1 0.15 3.2E-06 60.5 8.7 37 520-556 149-186 (450)
291 cd01983 Fer4_NifH The Fer4_Nif 94.1 0.077 1.7E-06 47.5 4.9 33 522-555 2-34 (99)
292 COG1222 RPT1 ATP-dependent 26S 94.1 0.056 1.2E-06 60.6 4.5 19 522-540 188-206 (406)
293 PRK07471 DNA polymerase III su 94.1 0.24 5.1E-06 57.1 9.9 36 511-546 29-68 (365)
294 PRK09302 circadian clock prote 94.1 0.077 1.7E-06 64.0 6.2 54 519-574 273-326 (509)
295 TIGR03015 pepcterm_ATPase puta 94.0 0.083 1.8E-06 57.7 5.9 38 506-543 25-67 (269)
296 COG0541 Ffh Signal recognition 94.0 0.69 1.5E-05 53.5 13.1 56 521-577 102-160 (451)
297 COG1102 Cmk Cytidylate kinase 94.0 0.04 8.6E-07 55.4 2.9 22 522-543 3-24 (179)
298 TIGR01242 26Sp45 26S proteasom 93.9 0.046 9.9E-07 63.0 3.8 22 522-543 159-180 (364)
299 PF00308 Bac_DnaA: Bacterial d 93.9 0.27 5.9E-06 52.5 9.5 50 506-555 16-71 (219)
300 PRK00080 ruvB Holliday junctio 93.9 0.069 1.5E-06 60.6 5.1 24 520-543 52-75 (328)
301 PRK08058 DNA polymerase III su 93.9 0.23 4.9E-06 56.5 9.3 45 663-707 110-160 (329)
302 cd00983 recA RecA is a bacter 93.9 0.097 2.1E-06 59.1 6.1 42 519-561 55-96 (325)
303 COG1474 CDC6 Cdc6-related prot 93.9 0.13 2.8E-06 59.3 7.2 64 507-570 23-95 (366)
304 PRK07764 DNA polymerase III su 93.9 0.13 2.8E-06 65.1 7.8 25 520-544 38-62 (824)
305 KOG0780|consensus 93.9 0.16 3.5E-06 57.4 7.6 57 520-576 102-160 (483)
306 PTZ00112 origin recognition co 93.9 0.071 1.5E-06 66.2 5.3 39 507-545 761-807 (1164)
307 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.047 1E-06 56.1 3.2 22 521-542 1-22 (183)
308 PRK08769 DNA polymerase III su 93.8 0.25 5.4E-06 55.8 9.2 45 663-707 113-163 (319)
309 PRK03992 proteasome-activating 93.8 0.075 1.6E-06 61.8 5.2 22 521-542 167-188 (389)
310 TIGR01360 aden_kin_iso1 adenyl 93.7 0.051 1.1E-06 55.8 3.4 25 519-543 3-27 (188)
311 COG4088 Predicted nucleotide k 93.7 0.056 1.2E-06 56.3 3.5 27 520-546 2-28 (261)
312 PHA02544 44 clamp loader, smal 93.7 0.15 3.2E-06 57.3 7.3 39 505-543 25-67 (316)
313 PRK13531 regulatory ATPase Rav 93.7 0.069 1.5E-06 63.0 4.6 31 514-544 34-64 (498)
314 PF00437 T2SE: Type II/IV secr 93.7 0.059 1.3E-06 59.2 3.9 48 508-556 115-163 (270)
315 PRK12326 preprotein translocas 93.7 0.28 6E-06 60.3 9.8 54 523-577 90-152 (764)
316 PRK13768 GTPase; Provisional 93.6 0.084 1.8E-06 57.7 4.9 34 521-555 4-37 (253)
317 COG0556 UvrB Helicase subunit 93.6 0.14 3E-06 60.0 6.7 60 508-571 16-80 (663)
318 PRK06851 hypothetical protein; 93.6 0.079 1.7E-06 60.8 4.7 45 519-564 214-260 (367)
319 KOG0342|consensus 93.5 0.2 4.3E-06 58.1 7.8 70 500-569 100-175 (543)
320 TIGR02524 dot_icm_DotB Dot/Icm 93.5 0.12 2.6E-06 59.4 6.2 29 518-546 133-161 (358)
321 PF00910 RNA_helicase: RNA hel 93.5 0.063 1.4E-06 50.5 3.3 24 523-546 2-25 (107)
322 TIGR03689 pup_AAA proteasome A 93.5 0.082 1.8E-06 63.2 5.0 24 521-544 218-241 (512)
323 TIGR01407 dinG_rel DnaQ family 93.5 0.17 3.6E-06 64.9 8.0 62 505-567 246-311 (850)
324 PF12846 AAA_10: AAA-like doma 93.5 0.096 2.1E-06 57.7 5.2 58 519-581 1-58 (304)
325 PF05673 DUF815: Protein of un 93.5 0.28 6E-06 53.0 8.4 60 519-579 52-112 (249)
326 TIGR00416 sms DNA repair prote 93.5 0.12 2.7E-06 61.1 6.4 53 519-573 94-146 (454)
327 PTZ00361 26 proteosome regulat 93.5 0.091 2E-06 61.8 5.2 23 521-543 219-241 (438)
328 KOG0781|consensus 93.5 0.33 7.1E-06 56.3 9.3 46 519-565 377-426 (587)
329 PF13555 AAA_29: P-loop contai 93.5 0.079 1.7E-06 45.0 3.4 26 520-545 24-49 (62)
330 PF03308 ArgK: ArgK protein; 93.5 0.078 1.7E-06 57.5 4.2 33 522-555 32-64 (266)
331 PRK05800 cobU adenosylcobinami 93.4 0.084 1.8E-06 54.2 4.2 46 521-570 3-48 (170)
332 KOG4284|consensus 93.4 0.081 1.8E-06 62.8 4.4 68 506-573 49-118 (980)
333 PRK06871 DNA polymerase III su 93.4 0.34 7.4E-06 54.9 9.3 45 663-707 107-157 (325)
334 TIGR00362 DnaA chromosomal rep 93.4 0.15 3.2E-06 59.7 6.7 35 521-555 138-173 (405)
335 PHA02533 17 large terminase pr 93.3 0.85 1.8E-05 55.2 13.2 66 504-569 59-125 (534)
336 COG1199 DinG Rad3-related DNA 93.3 0.2 4.3E-06 62.3 8.2 65 506-570 17-85 (654)
337 PRK07399 DNA polymerase III su 93.3 0.33 7.2E-06 54.8 9.1 45 663-707 124-173 (314)
338 KOG0331|consensus 93.2 0.26 5.6E-06 58.5 8.3 68 504-571 113-188 (519)
339 PF03266 NTPase_1: NTPase; In 93.2 0.075 1.6E-06 54.4 3.5 25 522-546 2-26 (168)
340 COG5192 BMS1 GTP-binding prote 93.2 0.11 2.3E-06 60.7 4.9 28 519-546 68-96 (1077)
341 PF03215 Rad17: Rad17 cell cyc 93.2 0.069 1.5E-06 64.1 3.6 24 520-543 46-69 (519)
342 PRK08233 hypothetical protein; 93.1 0.063 1.4E-06 54.9 2.8 24 520-543 4-27 (182)
343 PF04665 Pox_A32: Poxvirus A32 93.1 0.1 2.3E-06 56.3 4.6 40 516-556 9-49 (241)
344 PRK14962 DNA polymerase III su 93.1 0.078 1.7E-06 63.1 3.9 24 522-545 39-62 (472)
345 KOG0348|consensus 93.1 0.31 6.7E-06 57.1 8.4 68 504-571 159-234 (708)
346 PF07726 AAA_3: ATPase family 93.0 0.056 1.2E-06 52.6 2.1 37 665-702 64-102 (131)
347 PRK09354 recA recombinase A; P 93.0 0.16 3.4E-06 57.9 6.0 43 519-562 60-102 (349)
348 KOG0923|consensus 93.0 0.15 3.3E-06 60.9 5.9 58 517-574 278-337 (902)
349 PRK00440 rfc replication facto 93.0 0.13 2.8E-06 57.5 5.3 38 507-544 23-63 (319)
350 PRK08074 bifunctional ATP-depe 92.9 0.25 5.3E-06 63.9 8.4 62 506-567 259-324 (928)
351 TIGR00750 lao LAO/AO transport 92.9 0.12 2.6E-06 57.9 4.9 36 519-555 34-69 (300)
352 cd02021 GntK Gluconate kinase 92.9 0.076 1.7E-06 52.7 3.0 22 521-542 1-22 (150)
353 PRK08118 topology modulation p 92.9 0.085 1.8E-06 53.9 3.3 21 522-542 4-24 (167)
354 PRK12727 flagellar biosynthesi 92.8 0.22 4.8E-06 59.4 7.1 48 519-566 350-401 (559)
355 PRK12422 chromosomal replicati 92.8 0.29 6.3E-06 57.9 8.2 36 520-556 142-177 (445)
356 PF03205 MobB: Molybdopterin g 92.8 0.15 3.2E-06 50.7 4.8 35 520-555 1-35 (140)
357 PRK06620 hypothetical protein; 92.8 0.15 3.2E-06 54.4 5.1 20 520-539 45-64 (214)
358 PRK14961 DNA polymerase III su 92.8 0.11 2.4E-06 59.8 4.5 24 521-544 40-63 (363)
359 PF01078 Mg_chelatase: Magnesi 92.7 0.12 2.6E-06 54.4 4.3 35 507-541 9-44 (206)
360 PF13521 AAA_28: AAA domain; P 92.7 0.089 1.9E-06 53.1 3.2 21 522-542 2-22 (163)
361 COG1936 Predicted nucleotide k 92.7 0.081 1.7E-06 53.8 2.8 20 521-540 2-21 (180)
362 KOG3347|consensus 92.7 0.097 2.1E-06 51.9 3.2 22 519-540 7-28 (176)
363 KOG0385|consensus 92.7 0.66 1.4E-05 56.6 10.6 147 504-699 167-329 (971)
364 PRK06995 flhF flagellar biosyn 92.6 0.14 3E-06 60.8 5.1 36 520-555 257-293 (484)
365 PRK14530 adenylate kinase; Pro 92.6 0.1 2.2E-06 55.4 3.6 25 519-543 3-27 (215)
366 cd01125 repA Hexameric Replica 92.6 0.18 3.9E-06 54.4 5.6 50 521-571 3-63 (239)
367 PRK00131 aroK shikimate kinase 92.6 0.11 2.3E-06 52.6 3.6 25 519-543 4-28 (175)
368 TIGR00665 DnaB replicative DNA 92.6 0.16 3.5E-06 59.9 5.6 51 519-570 195-245 (434)
369 cd01393 recA_like RecA is a b 92.5 0.15 3.3E-06 54.2 4.9 40 519-558 19-63 (226)
370 cd03114 ArgK-like The function 92.5 0.17 3.6E-06 50.7 4.8 33 522-555 2-34 (148)
371 PRK14531 adenylate kinase; Pro 92.5 0.1 2.2E-06 54.0 3.4 22 521-542 4-25 (183)
372 KOG1131|consensus 92.5 2.4 5.1E-05 49.9 14.3 64 505-568 17-87 (755)
373 COG2255 RuvB Holliday junction 92.4 0.16 3.6E-06 55.4 4.9 24 520-543 53-76 (332)
374 COG4178 ABC-type uncharacteriz 92.4 0.25 5.3E-06 59.8 6.9 22 519-540 419-440 (604)
375 PRK06762 hypothetical protein; 92.4 0.11 2.3E-06 52.6 3.4 24 520-543 3-26 (166)
376 PRK03839 putative kinase; Prov 92.4 0.11 2.3E-06 53.5 3.3 22 522-543 3-24 (180)
377 COG1197 Mfd Transcription-repa 92.4 2 4.4E-05 55.2 15.0 65 504-569 594-664 (1139)
378 PTZ00301 uridine kinase; Provi 92.4 0.17 3.6E-06 53.8 4.9 27 520-546 4-30 (210)
379 KOG0920|consensus 92.3 0.46 9.9E-06 60.0 9.2 62 509-570 177-241 (924)
380 KOG0328|consensus 92.3 0.059 1.3E-06 58.2 1.3 67 506-572 51-119 (400)
381 PRK14723 flhF flagellar biosyn 92.3 0.22 4.9E-06 61.9 6.4 56 520-575 186-245 (767)
382 cd02023 UMPK Uridine monophosp 92.2 0.17 3.7E-06 52.8 4.7 33 521-556 1-33 (198)
383 PRK05541 adenylylsulfate kinas 92.2 0.17 3.6E-06 51.8 4.6 34 520-554 8-41 (176)
384 KOG0953|consensus 92.2 0.3 6.5E-06 57.5 6.8 128 515-702 187-319 (700)
385 COG0714 MoxR-like ATPases [Gen 92.2 0.16 3.5E-06 57.6 4.7 36 508-543 31-67 (329)
386 cd01428 ADK Adenylate kinase ( 92.1 0.11 2.4E-06 53.7 3.1 21 522-542 2-22 (194)
387 KOG0387|consensus 92.1 3.9 8.4E-05 50.5 16.1 160 504-699 205-377 (923)
388 KOG0390|consensus 92.1 1 2.2E-05 56.0 11.7 78 504-582 238-335 (776)
389 PTZ00454 26S protease regulato 92.1 0.098 2.1E-06 60.9 3.0 22 521-542 181-202 (398)
390 PRK14532 adenylate kinase; Pro 92.1 0.11 2.3E-06 53.8 3.0 20 522-541 3-22 (188)
391 PHA02244 ATPase-like protein 92.1 0.21 4.4E-06 57.2 5.4 31 512-542 111-142 (383)
392 PRK13107 preprotein translocas 92.1 0.6 1.3E-05 58.8 9.7 47 523-570 99-145 (908)
393 TIGR00176 mobB molybdopterin-g 92.0 0.21 4.5E-06 50.5 4.9 35 522-557 2-36 (155)
394 TIGR03600 phage_DnaB phage rep 92.0 0.25 5.5E-06 58.0 6.3 51 519-570 194-244 (421)
395 TIGR03574 selen_PSTK L-seryl-t 92.0 0.2 4.3E-06 54.5 5.0 33 521-554 1-33 (249)
396 PRK09435 membrane ATPase/prote 91.9 0.19 4.1E-06 57.0 4.9 34 521-555 58-91 (332)
397 PF00406 ADK: Adenylate kinase 91.9 0.12 2.5E-06 51.7 2.9 20 524-543 1-20 (151)
398 COG1618 Predicted nucleotide k 91.9 0.17 3.7E-06 51.0 3.9 25 522-546 8-32 (179)
399 PRK04040 adenylate kinase; Pro 91.9 0.13 2.8E-06 53.7 3.3 23 521-543 4-26 (188)
400 PRK06645 DNA polymerase III su 91.9 0.14 3.1E-06 61.3 4.0 26 520-545 44-69 (507)
401 cd01123 Rad51_DMC1_radA Rad51_ 91.9 0.15 3.2E-06 54.7 3.8 40 519-558 19-63 (235)
402 PF06068 TIP49: TIP49 C-termin 91.9 0.16 3.6E-06 57.6 4.2 25 519-543 50-74 (398)
403 PRK14527 adenylate kinase; Pro 91.8 0.14 3.1E-06 53.2 3.5 25 519-543 6-30 (191)
404 PRK13764 ATPase; Provisional 91.8 0.21 4.5E-06 60.9 5.2 27 519-545 257-283 (602)
405 COG3857 AddB ATP-dependent nuc 91.8 6.3 0.00014 50.2 17.9 57 521-578 3-65 (1108)
406 TIGR01313 therm_gnt_kin carboh 91.8 0.12 2.5E-06 52.2 2.7 21 523-543 2-22 (163)
407 PLN02200 adenylate kinase fami 91.8 0.13 2.9E-06 55.5 3.3 23 520-542 44-66 (234)
408 COG1703 ArgK Putative periplas 91.8 0.16 3.6E-06 55.8 4.0 34 521-555 53-86 (323)
409 PF03029 ATP_bind_1: Conserved 91.7 0.12 2.7E-06 55.9 3.0 22 524-545 1-22 (238)
410 COG1224 TIP49 DNA helicase TIP 91.7 0.14 2.9E-06 57.5 3.3 26 519-544 65-90 (450)
411 TIGR02322 phosphon_PhnN phosph 91.7 0.14 3E-06 52.5 3.3 24 520-543 2-25 (179)
412 KOG1533|consensus 91.7 0.15 3.2E-06 54.2 3.4 32 522-554 5-36 (290)
413 PRK02496 adk adenylate kinase; 91.7 0.14 3.1E-06 52.8 3.3 22 522-543 4-25 (184)
414 COG0470 HolB ATPase involved i 91.7 0.25 5.5E-06 55.3 5.7 26 521-546 26-51 (325)
415 KOG1970|consensus 91.7 0.12 2.7E-06 60.7 3.1 27 517-543 108-134 (634)
416 cd02028 UMPK_like Uridine mono 91.7 0.24 5.3E-06 51.1 5.0 33 521-554 1-33 (179)
417 COG1419 FlhF Flagellar GTP-bin 91.7 0.22 4.7E-06 57.3 5.0 47 519-565 203-253 (407)
418 cd02034 CooC The accessory pro 91.7 0.27 6E-06 47.1 5.0 44 522-569 2-45 (116)
419 cd02020 CMPK Cytidine monophos 91.7 0.15 3.3E-06 49.9 3.4 22 522-543 2-23 (147)
420 KOG0733|consensus 91.7 0.11 2.3E-06 61.8 2.5 22 522-543 226-247 (802)
421 PRK14528 adenylate kinase; Pro 91.6 0.15 3.2E-06 53.1 3.4 21 522-542 4-24 (186)
422 cd00227 CPT Chloramphenicol (C 91.6 0.16 3.5E-06 52.0 3.6 24 519-542 2-25 (175)
423 cd02025 PanK Pantothenate kina 91.6 0.23 5E-06 53.1 4.9 35 522-556 2-37 (220)
424 PRK13900 type IV secretion sys 91.6 0.27 5.9E-06 55.9 5.7 43 510-554 150-193 (332)
425 TIGR00150 HI0065_YjeE ATPase, 91.6 0.28 6E-06 48.3 5.0 35 519-557 22-56 (133)
426 PRK12608 transcription termina 91.5 0.23 4.9E-06 57.0 5.0 50 521-570 135-187 (380)
427 KOG0731|consensus 91.5 0.12 2.6E-06 63.6 2.9 19 522-540 347-365 (774)
428 PRK05480 uridine/cytidine kina 91.5 0.23 4.9E-06 52.4 4.7 33 520-555 7-39 (209)
429 COG0378 HypB Ni2+-binding GTPa 91.5 0.2 4.3E-06 52.1 4.0 52 522-579 16-71 (202)
430 PLN00020 ribulose bisphosphate 91.5 0.14 3E-06 58.4 3.1 23 521-543 150-172 (413)
431 PRK14963 DNA polymerase III su 91.5 0.17 3.6E-06 60.8 4.0 25 521-545 38-62 (504)
432 PRK07261 topology modulation p 91.4 0.16 3.4E-06 52.1 3.2 20 522-541 3-22 (171)
433 PRK06964 DNA polymerase III su 91.4 0.6 1.3E-05 53.3 8.2 46 662-707 131-182 (342)
434 KOG0651|consensus 91.4 0.13 2.9E-06 56.6 2.8 23 521-543 168-190 (388)
435 PF03796 DnaB_C: DnaB-like hel 91.4 0.31 6.8E-06 53.2 5.8 50 519-569 19-68 (259)
436 PRK07667 uridine kinase; Provi 91.4 0.26 5.7E-06 51.4 5.0 38 520-558 18-55 (193)
437 PRK13103 secA preprotein trans 91.4 0.79 1.7E-05 57.8 9.7 52 525-577 101-156 (913)
438 CHL00195 ycf46 Ycf46; Provisio 91.4 0.15 3.2E-06 61.0 3.4 23 521-543 261-283 (489)
439 PRK00889 adenylylsulfate kinas 91.3 0.27 5.8E-06 50.3 4.9 34 520-554 5-38 (175)
440 PF00485 PRK: Phosphoribulokin 91.3 0.17 3.6E-06 52.9 3.4 25 522-546 2-26 (194)
441 PRK12906 secA preprotein trans 91.3 0.7 1.5E-05 57.8 9.2 53 523-576 97-153 (796)
442 PRK00279 adk adenylate kinase; 91.3 0.16 3.6E-06 53.8 3.3 21 522-542 3-23 (215)
443 PRK12904 preprotein translocas 91.2 0.7 1.5E-05 58.1 9.1 54 523-577 98-155 (830)
444 KOG0727|consensus 91.2 0.2 4.4E-06 53.5 3.8 19 522-540 192-210 (408)
445 PRK06696 uridine kinase; Valid 91.2 0.27 5.8E-06 52.6 4.9 35 520-555 23-57 (223)
446 TIGR01241 FtsH_fam ATP-depende 91.2 0.14 3.1E-06 61.4 3.1 33 521-557 90-122 (495)
447 TIGR02397 dnaX_nterm DNA polym 91.1 0.26 5.6E-06 56.2 5.0 40 506-545 19-62 (355)
448 PHA00547 hypothetical protein 91.0 0.29 6.3E-06 52.7 4.8 37 508-544 64-100 (337)
449 KOG0926|consensus 91.0 0.67 1.5E-05 56.7 8.3 66 504-570 257-327 (1172)
450 cd03112 CobW_like The function 91.0 0.35 7.6E-06 48.9 5.3 55 520-579 1-57 (158)
451 TIGR01351 adk adenylate kinase 90.9 0.17 3.7E-06 53.5 3.1 20 522-541 2-21 (210)
452 KOG0738|consensus 90.9 0.15 3.3E-06 57.7 2.7 39 522-569 248-286 (491)
453 PF08433 KTI12: Chromatin asso 90.8 0.29 6.2E-06 54.1 4.8 35 520-555 2-36 (270)
454 PRK10463 hydrogenase nickel in 90.8 0.68 1.5E-05 51.5 7.7 72 506-580 88-162 (290)
455 PRK05439 pantothenate kinase; 90.8 0.3 6.5E-06 54.9 4.9 35 521-555 88-123 (311)
456 PRK13851 type IV secretion sys 90.8 0.24 5.2E-06 56.6 4.2 47 508-556 150-197 (344)
457 PRK08154 anaerobic benzoate ca 90.8 0.29 6.4E-06 55.1 4.9 41 503-543 106-157 (309)
458 cd02027 APSK Adenosine 5'-phos 90.8 0.31 6.8E-06 48.7 4.6 25 521-545 1-25 (149)
459 PRK04301 radA DNA repair and r 90.7 0.3 6.6E-06 55.1 5.0 52 519-570 102-159 (317)
460 PRK13407 bchI magnesium chelat 90.7 0.29 6.3E-06 55.7 4.8 24 520-543 30-53 (334)
461 cd00550 ArsA_ATPase Oxyanion-t 90.7 0.3 6.5E-06 53.4 4.8 35 521-556 2-36 (254)
462 PF13476 AAA_23: AAA domain; P 90.7 0.19 4.1E-06 51.7 3.1 28 518-545 18-45 (202)
463 KOG0343|consensus 90.6 0.72 1.6E-05 54.3 7.8 71 501-571 88-164 (758)
464 COG0563 Adk Adenylate kinase a 90.6 0.21 4.5E-06 51.7 3.3 21 522-542 3-23 (178)
465 cd02117 NifH_like This family 90.6 0.35 7.6E-06 51.2 5.1 31 523-554 4-34 (212)
466 PTZ00202 tuzin; Provisional 90.6 1.1 2.5E-05 52.2 9.3 61 507-573 268-335 (550)
467 PRK06547 hypothetical protein; 90.6 0.21 4.6E-06 51.3 3.3 23 520-542 16-38 (172)
468 COG1202 Superfamily II helicas 90.5 0.63 1.4E-05 55.1 7.3 78 502-580 214-298 (830)
469 TIGR02858 spore_III_AA stage I 90.5 0.87 1.9E-05 50.3 8.2 25 520-544 112-136 (270)
470 PRK13947 shikimate kinase; Pro 90.5 0.22 4.7E-06 50.6 3.3 22 522-543 4-25 (171)
471 cd03116 MobB Molybdenum is an 90.5 0.57 1.2E-05 47.6 6.2 59 521-580 3-66 (159)
472 COG3911 Predicted ATPase [Gene 90.5 0.2 4.4E-06 49.6 2.8 21 520-540 10-30 (183)
473 PRK08760 replicative DNA helic 90.4 0.4 8.6E-06 57.3 5.9 52 519-571 229-280 (476)
474 PRK05298 excinuclease ABC subu 90.4 1.1 2.4E-05 55.8 9.9 65 503-571 11-80 (652)
475 COG1223 Predicted ATPase (AAA+ 90.4 0.19 4E-06 54.2 2.6 21 520-540 152-172 (368)
476 KOG1942|consensus 90.3 0.23 5E-06 54.2 3.3 25 519-543 64-88 (456)
477 TIGR00631 uvrb excinuclease AB 90.3 1 2.2E-05 55.9 9.4 62 506-571 11-77 (655)
478 TIGR02236 recomb_radA DNA repa 90.3 0.33 7.1E-06 54.6 4.8 40 519-558 95-139 (310)
479 PRK05595 replicative DNA helic 90.2 0.46 1E-05 56.3 6.1 51 519-570 201-251 (444)
480 PRK10751 molybdopterin-guanine 90.1 0.37 8E-06 49.6 4.5 39 519-558 6-44 (173)
481 TIGR03575 selen_PSTK_euk L-ser 90.1 0.35 7.6E-06 55.0 4.8 38 521-558 1-38 (340)
482 PRK14957 DNA polymerase III su 90.1 0.26 5.6E-06 59.6 4.0 24 521-544 40-63 (546)
483 PF02374 ArsA_ATPase: Anion-tr 90.1 0.37 8.1E-06 54.2 5.0 47 520-567 2-50 (305)
484 PRK09087 hypothetical protein; 90.1 0.55 1.2E-05 50.5 6.1 22 519-540 44-65 (226)
485 PRK14955 DNA polymerase III su 90.1 0.27 5.9E-06 57.3 4.1 35 510-544 25-63 (397)
486 TIGR00041 DTMP_kinase thymidyl 90.0 0.52 1.1E-05 48.9 5.7 34 520-554 4-37 (195)
487 PRK05896 DNA polymerase III su 90.0 0.27 5.9E-06 59.7 4.0 25 521-545 40-64 (605)
488 PRK14494 putative molybdopteri 90.0 0.55 1.2E-05 50.5 5.9 59 521-580 3-64 (229)
489 KOG0389|consensus 90.0 2 4.4E-05 52.7 11.0 149 504-699 399-564 (941)
490 PRK05748 replicative DNA helic 90.0 0.51 1.1E-05 56.0 6.2 50 519-569 203-252 (448)
491 cd00464 SK Shikimate kinase (S 90.0 0.27 5.8E-06 48.7 3.4 22 522-543 2-23 (154)
492 PHA02624 large T antigen; Prov 90.0 0.25 5.4E-06 59.6 3.5 34 510-543 418-455 (647)
493 COG4962 CpaF Flp pilus assembl 89.9 0.42 9.1E-06 53.8 5.1 53 503-557 156-209 (355)
494 PTZ00088 adenylate kinase 1; P 89.9 0.26 5.6E-06 53.1 3.4 21 522-542 9-29 (229)
495 cd01672 TMPK Thymidine monopho 89.9 0.43 9.3E-06 49.2 5.0 33 521-554 2-34 (200)
496 PF13479 AAA_24: AAA domain 89.7 0.26 5.7E-06 52.3 3.2 26 522-556 6-31 (213)
497 KOG0344|consensus 89.6 0.96 2.1E-05 53.8 7.9 69 505-573 159-234 (593)
498 PRK05342 clpX ATP-dependent pr 89.6 0.27 5.9E-06 57.5 3.6 24 519-542 108-131 (412)
499 PHA02530 pseT polynucleotide k 89.6 0.23 5E-06 55.3 2.9 24 520-543 3-26 (300)
500 PRK14970 DNA polymerase III su 89.6 0.45 9.7E-06 54.8 5.3 38 507-544 23-64 (367)
No 1
>KOG1802|consensus
Probab=100.00 E-value=4.6e-232 Score=1917.72 Aligned_cols=860 Identities=68% Similarity=1.132 Sum_probs=828.7
Q ss_pred CCCCCCccccCCccccCCCccccccccchhhhhhcCCCCCCCchhhhhhhcccccccccccccCccccccCCCccccCcc
Q psy3251 26 GDTQGSEFDFTDFTLPSQSQTQASQLDSVNQIQVNGKQNLDNSNLNLVSQKLHELQFEEEEDDGNEFFNKELPPHACKYC 105 (959)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~yc 105 (959)
++||+++|||.||..|.++| ++.++..... ..+...++++.|||-..+.+-.....+|+|+|+||
T Consensus 2 ~n~~ds~~e~~~~~~~~~~~-~~~~L~~g~~--------------~~v~d~~~e~~fee~~~~~~~~~~~~~~~~~c~Yc 66 (935)
T KOG1802|consen 2 GNTQDSEFEYCQFPSPTQSQ-PATDLSSGVG--------------GKVDDSVGEVLFEECLVEKNRAREQKLPEHACAYC 66 (935)
T ss_pred CCCCCCcceeccCCccccCC-CCcccccccc--------------cccccccchhhhhhhccccccccccccchhhhhhc
Confidence 78999999999997777774 3333333111 12233378999998555544455669999999999
Q ss_pred CCCCCCceeecCccCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCCcceeeeeceeccCCcEEE
Q psy3251 106 GIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKADSVVV 185 (959)
Q Consensus 106 ~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~~n~f~lgf~~~~~~~~~~ 185 (959)
||++|.||++|++|+|||||||++|+|||||+||||++||+|+||+|+|+|||+||||+||++|||+|||+|+|+|+|||
T Consensus 67 gi~~p~~v~kc~~c~Kwfcn~r~gtsgshIv~hlvra~hk~v~lh~ds~lget~lecyncg~~nvf~lGFi~~ksd~VVv 146 (935)
T KOG1802|consen 67 GISEPACVIKCNTCGKWFCNSRGGTSGSHIVNHLVRAKHKEVSLHKDSPLGETVLECYNCGSRNVFLLGFIPAKSDSVVV 146 (935)
T ss_pred cCCCchheeeccccCceeecCCCCCchhHHHHHHHHhhhheeEeccCCCCCcceEEeeccCcchhhhhcccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccccccccCCCCCCccccccccccccccccCCCHHHhhhccCCCHHHHHHHHHHHhhCcccccccccCCCCC
Q psy3251 186 LLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEKPGVD 265 (959)
Q Consensus 186 ~~cr~~c~~~~~~~~~~~d~~~w~pli~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~le~~w~~~~~~~~~~~~~~~~~ 265 (959)
|+||+||++.+.+||||||.+||+|||+|||||+||+++|+++|+.+||+||++||++|||+||+||+||++||++|+.+
T Consensus 147 llcr~pcas~s~~kd~Nwd~~qw~~li~dr~~l~wivk~pseqe~~~aR~iT~qqi~~~eelwr~np~at~~dl~kP~~d 226 (935)
T KOG1802|consen 147 LLCRQPCASRSNLKDMNWDLSQWQPLIEDRCLLSWIVKVPSEQEQLRARKITAQQIVKLEELWRKNPSATLEDLDKPGED 226 (935)
T ss_pred EEecCcccccccCCCcCCChhhccchhhhhcccchhccCCcchhhhhhccccHHHHHHHHhhhccCCccchhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCChHHHHHhhhhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCccccccccchhhh
Q psy3251 266 EDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVK 345 (959)
Q Consensus 266 ~~~~~~~~~y~~~~~y~~~f~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Y~~~f~pLi~ 345 (959)
+++++|++||+|||+||++|+|||+|||||||++||||++++++|||++|||+|++|||.+++.+.
T Consensus 227 ~~~~hv~~ry~da~~y~~vf~pliklea~ydk~~Kes~~q~~~tvRW~~gLnkk~~a~f~~~k~~~-------------- 292 (935)
T KOG1802|consen 227 EEPPHVQLRYEDAYEYQNVFSPLIKLEADYDKRLKESQTQENGTVRWDIGLNKKRLAYFTLPKLDS-------------- 292 (935)
T ss_pred cCCCcccccccchHHHhhhcchhhhhhhhhhhhhhhhcccccceEEeeeccccceEEEEecCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998844
Q ss_pred hhhhhhhhhhhcccccceeeeeecccccceeeEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEEEecCCCCCCeE
Q psy3251 346 LEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEV 425 (959)
Q Consensus 346 lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v~~~~~~~~~ev 425 (959)
+++++.||+++|+|+|....+|+++|+|+++|+++++|+
T Consensus 293 -----------------------------------------e~kl~~GdE~~L~y~~~~~~~w~~~g~v~~~pd~~~dE~ 331 (935)
T KOG1802|consen 293 -----------------------------------------ELKLAIGDEIRLTYSGGLVLPWNGIGSVLKIPDNNGDEV 331 (935)
T ss_pred -----------------------------------------hhccccCCeeEEEecCCcCCcccccceEEecCCCCccee
Confidence 899999999999999999888999999999999999999
Q ss_pred EEEeccCCCCCCCCCcceEEEEeeCccHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCC
Q psy3251 426 GLELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDL 505 (959)
Q Consensus 426 ~l~l~~~~~~p~~~~~~~~v~~~~~~~~~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~L 505 (959)
.||++...+.|.+.++.|+|+|+|++++|+||+.||+.|+.|+++++.|+|+.++||+.++..+...+|+.|+.|+++.|
T Consensus 332 ~lEl~~~~~~p~e~~~~Ftvd~vwk~ts~drm~~alk~la~D~~~vs~y~y~klLgh~~~~~~~k~~LP~~~s~~~lpkL 411 (935)
T KOG1802|consen 332 KLELEFSQDPPIEVTHGFTVDFVWKSTSFDRMQLALKLLAVDEKKVSGYLYHKLLGHPVEDSSLKKLLPRRFSVPNLPKL 411 (935)
T ss_pred EEEeecCCCCCcccccceEEEEEEcCccHHHHHHHHHHhhhccccchhhhhhHHhcCcchhhhhcccCchhhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccc
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREA 585 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~ 585 (959)
|.||..||+++|++|++|||||||||||.|+++||++|+++...+||||||||.|||+|+++|+++|++|+|+++++||.
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~aksRE~ 491 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCAKSRED 491 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeeehhhhhh
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcC
Q psy3251 586 IDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFH 665 (959)
Q Consensus 586 i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd 665 (959)
+.++++++++|.+++.+.. ++++++.+++++.++++..++++|+.+++..+++++.+|+||||||++||+.+|..++|.
T Consensus 492 ~~S~vs~L~lh~~~~~~~~-pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~rl~~~kfr 570 (935)
T KOG1802|consen 492 IESDVSFLSLHEQLRNMDK-PELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDRRLSKFKFR 570 (935)
T ss_pred ccCCccHHHHHHHHhccCc-HHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccccchhhcccccc
Confidence 9999999999999999877 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCCchhHhhh
Q psy3251 666 SILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKF 745 (959)
Q Consensus 666 ~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRmhp~I~~f 745 (959)
.||||||+|++||++|||+++|++++||||||+||+|++++++++.+||.+||||||+..|..|++|.+||||||.|++|
T Consensus 571 ~VLiDEaTQatEpe~LiPlvlG~kq~VlVGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP~lSef 650 (935)
T KOG1802|consen 571 TVLIDEATQATEPECLIPLVLGAKQLVLVGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHPALSEF 650 (935)
T ss_pred EEEEecccccCCcchhhhhhhcceeEEEeccccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEE
Q psy3251 746 PSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIG 825 (959)
Q Consensus 746 ~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~Ig 825 (959)
||++||+|.|++|++..+|...++++|||.++.|++|+...|.|+++.+|+||.|+.||..++++++.|++.|+.+++||
T Consensus 651 psn~fY~G~LqnGVT~~~R~~~g~~~pwp~p~~pl~fy~~~g~eeisasGtSf~Nr~Ea~~~ekii~~l~~~gv~~~qIG 730 (935)
T KOG1802|consen 651 PSNMFYEGELQNGVTEIERSPLGVDFPWPQPDKPLFFYVCYGQEEISASGTSFLNRTEAANCEKIITKLLKSGVKPSQIG 730 (935)
T ss_pred chhhhccchhhcCcchhhhccCCCCCCCCCCCCccceEEeccceeeeccccceecHHHHHHHHHHHHHHHHcCCCHHHee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEE
Q psy3251 826 VITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGII 905 (959)
Q Consensus 826 IITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~Li 905 (959)
|||||.+|+.+|.++|+..|.++..++..|+|+|||+|||+|+|+||+||||+|...+|||++|+|||||||||||+||+
T Consensus 731 VITpYegQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRsn~~qgIGFl~d~RRlNVaLTRaK~glv 810 (935)
T KOG1802|consen 731 VITPYEGQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGLV 810 (935)
T ss_pred eecccchhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeecccccccccccCchhhhhhhhhcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCchHHHHHHHHHHcCceeeccCcchhhhcccCCCCcccccc
Q psy3251 906 VIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFSKPKQYFKK 956 (959)
Q Consensus 906 IvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~~~l~~~~~~~~~p~~~~~~ 956 (959)
||||+.+|+++++|.+||.|+++++++++|++++|++++++|.+|++..+-
T Consensus 811 ivGN~~~L~k~~LW~~li~h~~eke~l~eg~ln~l~~~~~~l~kp~~~~~~ 861 (935)
T KOG1802|consen 811 IVGNPKVLRKHPLWGHLITHYKEKEVLVEGPLNNLKPSLLQLLKPQKLKNF 861 (935)
T ss_pred EecCHHHhhhchHHHHHHHHhhcccceeecchhhhhhhhhhhcCCchhhhh
Confidence 999999999999999999999999999999999999999999999977653
No 2
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=7e-81 Score=749.27 Aligned_cols=554 Identities=34% Similarity=0.458 Sum_probs=431.2
Q ss_pred HHHhhhccccceEEEEeccCCceeEEEEEccccCCCccccccccchhhhhhhhhhhhhhhcccccceeeeeeccccccee
Q psy3251 297 KRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSI 376 (959)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Y~~~f~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~ 376 (959)
+..+.++...++.++|..|++.+++..|.-.. .
T Consensus 21 ~~~~~g~~~~~l~~~~~~~~~g~~~~~f~~~~--~--------------------------------------------- 53 (637)
T TIGR00376 21 QRERRGRAILNLQGKIRGGLLGFLLVRFGRRK--A--------------------------------------------- 53 (637)
T ss_pred HHHhcCceEeceEEEEEeCCCCeEEEEEecCC--C---------------------------------------------
Confidence 56677888999999999999999999888322 1
Q ss_pred eEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEEEecCCCCCCeEEEEeccCCCCCCCCCcceEEEEeeCccHHHH
Q psy3251 377 AYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKSTSFDR 456 (959)
Q Consensus 377 ~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v~~~~~~~~~ev~l~l~~~~~~p~~~~~~~~v~~~~~~~~~~R 456 (959)
.+..+.+||.|.|+..+. ..|...|+|+++.++ .|.|.+... .|......|++++.||.++|+|
T Consensus 54 ---------~~~~~~~GD~v~i~~~~~--~~~~~~g~V~~v~~~---~i~v~~~~~--~~~~~~~~~~i~~~~~~~t~~r 117 (637)
T TIGR00376 54 ---------IATEISVGDIVLVSRGNP--LQSDLTGVVTRVGKR---FITVALEES--VPQWSLKRVRIDLYANDVTFKR 117 (637)
T ss_pred ---------CCCcCCCCCEEEEecCCC--CCCCcEEEEEEEcCc---EEEEEECCC--CCcccCceEEEEEecCccHHHH
Confidence 145788999999996443 356788999999764 466666532 3443445699999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CcEEEEcCCCChHHHH
Q psy3251 457 MQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVT 535 (959)
Q Consensus 457 ~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~al~~-~l~LIqGPPGTGKT~T 535 (959)
|..||.++..... .+++.++|...+...... .+..+. .+.||++|+.||..++.. ++++|+||||||||+|
T Consensus 118 m~~aL~~l~~~~~----~l~~~llg~~~p~~~~~~-~~~~~~---~~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t 189 (637)
T TIGR00376 118 MKEALRALTENHS----RLLEFILGREAPSKASEI-HDFQFF---DPNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT 189 (637)
T ss_pred HHHHHHHHHhchh----hHHHHHhCCCCCCccccc-cccccc---CCCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH
Confidence 9999999975432 567888887644321111 111111 257999999999999976 8999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHH----HH
Q psy3251 536 SATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELK----KL 611 (959)
Q Consensus 536 ia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~----kl 611 (959)
+++++.++++. +.+||+|||||.|||+|.++|...+++++|+|+.++.. ..+...++...+...+....++ ++
T Consensus 190 ~~~ii~~~~~~-g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~r~~--~~~~~~sl~~~~~~~~~~~~~~~~~~~i 266 (637)
T TIGR00376 190 LVELIRQLVKR-GLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPARLL--KSNKQHSLDYLIENHPKYQIVADIREKI 266 (637)
T ss_pred HHHHHHHHHHc-CCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCchhcc--hhHHhccHHHHHhcChhHHHHHHHHHHH
Confidence 99999999886 56999999999999999999999999999999987632 1122222222222111110000 00
Q ss_pred HHHHHH------------------------hc-----cCCh--------------H---HHHHHHHHHHHHHHHhhccCc
Q psy3251 612 LQLKEE------------------------TG-----ELSS--------------A---DEKRYRMLKKNAEKSLLDNAD 645 (959)
Q Consensus 612 ~~lk~~------------------------~~-----~ls~--------------~---~~k~~~~l~~~~e~~lL~~a~ 645 (959)
.++..+ .. .+.. . ..+.++.....+..+++.+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~ 346 (637)
T TIGR00376 267 DELIEERNKKLKPSPQKRRGLSDIKILRKALKKREARGIESLKIASMAEWIETNKSIDRLLKLLPEIEERIENEILAESD 346 (637)
T ss_pred HHHHHHHHhhccchHhHhhccchHHHHHHHHhhhhhcccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 100000 00 0000 0 001111223345678899999
Q ss_pred eeeeeccccCCcccccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc
Q psy3251 646 VICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 725 (959)
Q Consensus 646 VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~ 725 (959)
|+++| +++..+....||+||||||+|++||++|+|+.. ++++||||||+||||++.+.. ..+++.|+|+||+..
T Consensus 347 v~~st---~~~~~l~~~~Fd~vIIDEAsQ~~ep~~lipl~~-~~~~vLvGD~~QLpP~v~s~~--~~~l~~SlferL~~~ 420 (637)
T TIGR00376 347 VVQST---NSSAGLKGWEFDVAVIDEASQAMEPSCLIPLLK-ARKLILAGDHKQLPPTILSHD--AEELELTLFERLIKE 420 (637)
T ss_pred EEEec---cCcHhhccCCCCEEEEECccccchHHHHHHHhh-CCeEEEecChhhcCCcccccc--ccccchhHHHHHHHh
Confidence 88776 455667788999999999999999999999985 579999999999999998765 468999999999986
Q ss_pred -CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCC-------CCCCCCeEEEEcCCcce---eccC
Q psy3251 726 -GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW-------PVPDKPMLFYVTQGQEE---IAGS 794 (959)
Q Consensus 726 -g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~-------p~~~~p~~f~~~~g~ee---~~~~ 794 (959)
+....+|++||||||+|++|+|..||+|+|.++.+...+.+.....+. .....|++|+++.|.+. ....
T Consensus 421 ~~~~~~~L~~QYRMh~~I~~f~s~~fY~g~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~fidt~g~~~~e~~~~~ 500 (637)
T TIGR00376 421 YPERSRTLNVQYRMNQKIMEFPSREFYNGKLTAHESVANILLRDLPKVEATDSEDDLETEIPLLFIDTSGCELFELKEAD 500 (637)
T ss_pred CCCceeecchhcCCCHHHHhhhHHhhcCCccccCcchhhhhhhhcccccccccccccCCCCCEEEEECCCccccccccCC
Confidence 345789999999999999999999999999988766555432221111 12356999999998764 3456
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEE
Q psy3251 795 GTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMS 874 (959)
Q Consensus 795 g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS 874 (959)
++|+.|..||..|.+++..|++.|+++.+|||||||++|+.+|++.|.... ..++|.|||+|||+|+|+||+|
T Consensus 501 ~~S~~N~~EA~~V~~~v~~l~~~g~~~~~IgVItPY~aQv~~L~~~l~~~~-------~~i~v~TVd~fQG~E~DvIi~S 573 (637)
T TIGR00376 501 STSKYNPGEAELVSEIIQALVKMGVPANDIGVITPYDAQVDLLRQLLEHRH-------IDIEVSSVDGFQGREKEVIIIS 573 (637)
T ss_pred CCCcCCHHHHHHHHHHHHHHHhcCCCcceEEEEcccHHHHHHHHHHHHhhC-------CCeEEccccccCCccccEEEEE
Confidence 789999999999999999999999999999999999999999999986432 3699999999999999999999
Q ss_pred ccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceeeccC
Q psy3251 875 CVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPL 937 (959)
Q Consensus 875 ~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~ 937 (959)
+||+|....+||+.|+|||||||||||++||||||..+|+++++|++|++|++++|++++..+
T Consensus 574 ~vrsn~~~~~gFl~d~rRLNVAlTRAK~~LiIvGn~~~l~~~~~~~~li~~~~~~~~~~~~~~ 636 (637)
T TIGR00376 574 FVRSNRKGEVGFLKDLRRLNVALTRARRKLIVIGDSRTLSNHKFYKRLIEWCKQHGEVREAFK 636 (637)
T ss_pred EEecCCCCCcccccCcceeeeehhhhhCceEEEECHHHhccChHHHHHHHHHHHCCCEEcCCC
Confidence 999999889999999999999999999999999999999999999999999999999998765
No 3
>KOG1803|consensus
Probab=100.00 E-value=2.1e-81 Score=707.64 Aligned_cols=558 Identities=31% Similarity=0.437 Sum_probs=421.8
Q ss_pred eeeeecccccceeeEeeecc-cCCCCCCCCCCEEEEEEccCCCC-cceeEEEEEecCCCCCCeEEEEeccCCCCCCCCCc
Q psy3251 364 TVRWDVGLNKKSIAYFSLAK-TDGDMRLMQGDELKLRYSYDASK-TWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATT 441 (959)
Q Consensus 364 tvr~~~~~~~k~~~~f~~~~-~~~~~~l~~GD~v~l~~~~~~~~-~~~~~g~v~~~~~~~~~ev~l~l~~~~~~p~~~~~ 441 (959)
.+...+|+-++++..|+... ......+.+||.|.||......+ .-+..|.|+++... .+++.+....+.|....
T Consensus 48 ~v~~~tGl~g~~li~f~~~~~~lp~~~~~~gd~v~lr~~~~~~~~~~~~~GvV~~~~~~---~i~~a~ee~~d~~~~~~- 123 (649)
T KOG1803|consen 48 LVSVRTGLGGKSLIVFSKNREVLPSNSFGPGDVVWLRTDKLNNKSKPCTEGVVYRVAED---SIDVAFEEEVDKPLTLS- 123 (649)
T ss_pred EEEEeecccceEEEEeccCccccCcCCCCCCcEEEEEcccccccCcccccceeEeeccc---hhhHhHHhhhcccchhh-
Confidence 35667899999999998654 33456789999999994332222 22566788887654 45544444444444322
Q ss_pred ceEEEEeeCccHHHHHHHHHHHHHHh-hhhhHHHHHHHhcCCCcchhhccc-CCCCCCCCCCCCCCCHHHHHHHHHHhcC
Q psy3251 442 GFSVDFIWKSTSFDRMQLALRKFAVD-DQSVSAYIYHRLLGHNVDEVLFRC-HLPKHFSAPNLPDLNRSQVYAVKHAIQR 519 (959)
Q Consensus 442 ~~~v~~~~~~~~~~R~~~aL~~~~~~-~~~~~~~i~~~llg~~~~~~~~~~-~~p~~~~~~~~~~LN~sQ~~AV~~al~~ 519 (959)
..++.-..|..+|+||..++..+... ....+..+.+.+.|...+...... ..... +-...||.+|++||..+..+
T Consensus 124 ~l~l~kl~n~vty~R~~~~~i~l~~~~~~~~~~~vv~~l~~~~~~~~~~~~~~~~~~---~~~~~ln~SQk~Av~~~~~~ 200 (649)
T KOG1803|consen 124 SLRLLKLENKVTYRRMKDTMICLSKFSNPGPSSDVVETLFGDRKPIPSPNIEIKKIT---FFNKNLNSSQKAAVSFAINN 200 (649)
T ss_pred HHHHHHhhhhhhheecHHHHhhHhhhcCccchhhhHHHHhccccCCCCchhhhcccc---cCCccccHHHHHHHHHHhcc
Confidence 34445566778999999988876541 111334455666664322111110 01111 22357999999999999976
Q ss_pred -CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHH
Q psy3251 520 -PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQ 598 (959)
Q Consensus 520 -~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~ 598 (959)
.+.+|+||||||||+|++++|.+++++ +++||||||||.||||+.+||...+.+++|+|.+.|......... +...
T Consensus 201 k~l~~I~GPPGTGKT~TlvEiI~qlvk~-~k~VLVcaPSn~AVdNiverl~~~~~~l~R~g~paRl~~~~~~~s--ld~~ 277 (649)
T KOG1803|consen 201 KDLLIIHGPPGTGKTRTLVEIISQLVKQ-KKRVLVCAPSNVAVDNIVERLTHLKLNLVRVGHPARLLESVADHS--LDLL 277 (649)
T ss_pred CCceEeeCCCCCCceeeHHHHHHHHHHc-CCeEEEEcCchHHHHHHHHHhcccccchhhcCchhhhhhhhhhhH--HHHH
Confidence 999999999999999999999999998 689999999999999999999999999999999877432211111 1111
Q ss_pred HHhhh---hhHHHH-HHHHHHHHhccC-----ChHH-------HHHHHHHHHHHHHHhhccCceeeeeccccCCcccccC
Q psy3251 599 IRNME---MNSELK-KLLQLKEETGEL-----SSAD-------EKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662 (959)
Q Consensus 599 i~~~~---~~~~l~-kl~~lk~~~~~l-----s~~~-------~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~ 662 (959)
...-+ ...... .+.......... .... .+.+++..+....+++.+++||++|..++....+.+.
T Consensus 278 ~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~n~~VVfaTl~ga~~~~~~~~ 357 (649)
T KOG1803|consen 278 SNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIISNSRVVFATLGGALDRLLRKR 357 (649)
T ss_pred HhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEEEeccchhhhhhccc
Confidence 11100 000011 111111111111 1111 1122222233446889999999999999999778888
Q ss_pred CcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC--CccEEeccccCCch
Q psy3251 663 KFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG--IRPFRLEVQYRMHP 740 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g--~~~~~L~~qYRmhp 740 (959)
.||+||||||+|+.||+||+|+.. .+++||+|||+||||++.+..+...|+..|+|+|+.... .-.+.|++|||||.
T Consensus 358 ~fD~vIIDEaaQamE~~cWipvlk-~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~ 436 (649)
T KOG1803|consen 358 TFDLVIIDEAAQAMEPQCWIPVLK-GKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNE 436 (649)
T ss_pred CCCEEEEehhhhhccchhhhHHhc-CCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcchH
Confidence 999999999999999999999975 579999999999999999999999999999999998763 44689999999999
Q ss_pred hHhhhhhhhhccCCcccccccccccccCCCCCC--CCCCCCeEEEEcCCcceeccC-----CCcccCHHHHHHHHHHHHH
Q psy3251 741 ELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW--PVPDKPMLFYVTQGQEEIAGS-----GTSYVNRTEASNVEKITTR 813 (959)
Q Consensus 741 ~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~--p~~~~p~~f~~~~g~ee~~~~-----g~S~~N~~EA~~V~~iv~~ 813 (959)
.|+.|+|..||+|+|.+..+...+.+..+.... +.-..|++++++.|.+..+.. -.|+.|..||+.|...+.+
T Consensus 437 ~Im~wsn~~fY~~qlka~~~v~~~lL~dl~~v~~t~~t~~PlvlvDT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~ 516 (649)
T KOG1803|consen 437 KIMNWSNEVFYNGQLKAASSVASHLLRDLPNVLATESTKSPLVLVDTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKR 516 (649)
T ss_pred HHhhCcHhhhcCCeeeecchhhhhhhhcccCCCCccccCCcEEEEecccchhhhhccchhhccccCCHHHHHHHHHHHHH
Confidence 999999999999999998888877765443322 224789999999987543222 1388999999999999999
Q ss_pred HHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCce
Q psy3251 814 FIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRL 893 (959)
Q Consensus 814 Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRL 893 (959)
|++.|++|.+|||||||++|+.+|++.. .....+++|+|||+|||+|+|+||||+||||+.+.+||+.|.|||
T Consensus 517 L~~~gV~p~dIaVIsPY~aQv~llR~~~-------~~~~~~veV~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~RRL 589 (649)
T KOG1803|consen 517 LLEAGVQPSDIAVISPYNAQVSLLREED-------EEDFRDVEVGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETRRL 589 (649)
T ss_pred HHHcCCChhHeEEeccchHHHHHHhhcc-------cccCccceeecccccccceeeEEEEEEEeecCcccccccCCccee
Confidence 9999999999999999999999998321 122357999999999999999999999999999999999999999
Q ss_pred eecchhhcccEEEEEcccccc-CCchHHHHHHHHHHcCceeeccCcc
Q psy3251 894 NVALTRAKYGIIVIGNPKVLS-KQPLWNNLLNFYKEQKVLVEGPLNN 939 (959)
Q Consensus 894 NVAlTRAK~~LiIvGn~~~L~-~~~~W~~ll~~~~~~~~~v~g~~~~ 939 (959)
|||+||||+++++|||..+++ .+...+.++.|+.+++.+..+++..
T Consensus 590 NVAiTRaRRh~~vIgds~tl~~~~~~l~k~~~f~~~~~~~~~p~~~~ 636 (649)
T KOG1803|consen 590 NVAITRARRHFVVIGDSRTLKEGNEFLKKLVEFLEENKLVFGPSILE 636 (649)
T ss_pred eEEEEeccceEEEEcCcHHHHhhHHHHHHHHHHhhhcceeccccchh
Confidence 999999999999999999999 8999999999999999998666543
No 4
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=100.00 E-value=3.2e-77 Score=575.11 Aligned_cols=152 Identities=74% Similarity=1.410 Sum_probs=118.3
Q ss_pred cccCccCCCCCCceeecCccCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCCcceeeeeceecc
Q psy3251 100 HACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAK 179 (959)
Q Consensus 100 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~~n~f~lgf~~~~ 179 (959)
|||+|||+|+|+|||+|++|+||||||+|+|+|||||+||||||||||+||||||||||+||||+||+||||+|||||||
T Consensus 1 haC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~NvF~LGFipak 80 (152)
T PF09416_consen 1 HACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSRNVFLLGFIPAK 80 (152)
T ss_dssp TS-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT----TTTEEEEEET
T ss_pred CCccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCCceeeEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCcccccccccccCCCCCCccccccccccccccccCCCHHHhhhccCCCHHHHHHHHHHHhhC
Q psy3251 180 ADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDN 251 (959)
Q Consensus 180 ~~~~~~~~cr~~c~~~~~~~~~~~d~~~w~pli~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~le~~w~~~ 251 (959)
+|+|||||||+||++.+++||||||+++|||||+||+||||||++|+++||.+||+||++||+||||+||+|
T Consensus 81 ~d~vvvllCR~pC~~~~~~kd~~wD~~~W~PLI~dr~fl~wlv~~Ps~~e~~~ar~it~~qI~klEe~wk~n 152 (152)
T PF09416_consen 81 SDSVVVLLCRQPCANQPSLKDMNWDTSQWQPLIEDRQFLPWLVKIPSEEEQLRARQITPQQINKLEELWKEN 152 (152)
T ss_dssp TSCEEEEEETTTTTSTTTCTTTTS-GGG-EESEETTCE-TTTS----CCHHHHS----HHHHHHHHHHHCT-
T ss_pred cCCeEEEEeCCchhccchhccccCCHhhCccccccccchHhhcCCCChHHHhhhccCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>KOG1805|consensus
Probab=100.00 E-value=8.1e-63 Score=576.47 Aligned_cols=390 Identities=34% Similarity=0.569 Sum_probs=324.6
Q ss_pred CCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 502 LPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
+..||..|++|+..++. ....||.|-||||||||++++|..|+.. +++||++++||.|||||.-||...++.++|+|.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~ 745 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-GKKVLLTSYTHSAVDNILIKLKGFGIYILRLGS 745 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-CCeEEEEehhhHHHHHHHHHHhccCcceeecCC
Confidence 34799999999999986 7899999999999999999999988876 789999999999999999999999999999997
Q ss_pred ccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccc
Q psy3251 581 KSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLL 660 (959)
Q Consensus 581 ~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~ 660 (959)
..+ .|..++++- .-.....+.|..+ +..+++..||.|||.|..++.+.
T Consensus 746 ~~k-----------ih~~v~e~~----------------~~~~~s~ks~~~l-----~~~~~~~~IVa~TClgi~~plf~ 793 (1100)
T KOG1805|consen 746 EEK-----------IHPDVEEFT----------------LTNETSEKSYADL-----KKFLDQTSIVACTCLGINHPLFV 793 (1100)
T ss_pred ccc-----------cchHHHHHh----------------cccccchhhHHHH-----HHHhCCCcEEEEEccCCCchhhh
Confidence 543 222222211 0111112223322 24578899999999999999888
Q ss_pred cCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCC-ccEEeccccCCc
Q psy3251 661 KIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGI-RPFRLEVQYRMH 739 (959)
Q Consensus 661 ~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~-~~~~L~~qYRmh 739 (959)
...||++|||||+|+..|-+|.|+.. ++++||||||.||||.|.+..|...|++.|||+||-..+. ....|+.||||+
T Consensus 794 ~R~FD~cIiDEASQI~lP~~LgPL~~-s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn 872 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILLPLCLGPLSF-SNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMN 872 (1100)
T ss_pred ccccCEEEEccccccccchhhhhhhh-cceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhc
Confidence 88999999999999999999999986 6899999999999999999999999999999999987554 456899999999
Q ss_pred hhHhhhhhhhhccCCccccccccccc------------cc-CCCCCCC----CCCCCeEEEEcCCccee--ccCCCcccC
Q psy3251 740 PELSKFPSNFFYEGSLQNGVCADERK------------LS-KIDFPWP----VPDKPMLFYVTQGQEEI--AGSGTSYVN 800 (959)
Q Consensus 740 p~I~~f~s~~fY~g~L~~~~~~~~r~------------~~-~~~~~~p----~~~~p~~f~~~~g~ee~--~~~g~S~~N 800 (959)
.+|+.++|.+||+|+|..|...-.+. .. ....+|- .+..++.|+.+.....+ .....-..|
T Consensus 873 ~~I~~LSN~L~Yg~~L~Cgs~eVs~~~~~~~~~~~~~~~~~s~s~~wl~~v~~p~~~v~f~~~D~~~~ie~~~e~~~i~N 952 (1100)
T KOG1805|consen 873 REIMRLSNKLIYGNRLKCGSKEVSRASELDRKGALSVYMDDSSSDHWLQAVLEPTRDVCFVNTDTCSTIESQGEKGGITN 952 (1100)
T ss_pred chHHhhhhhheECCeeeecChhhhhhhccccchhhhhhcccccchHHHHHhhcCCccceEEecCcccchhhhccccCcCc
Confidence 99999999999999999775433211 00 0122342 35678888666544222 223345669
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCC
Q psy3251 801 RTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSND 880 (959)
Q Consensus 801 ~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~ 880 (959)
..||..+.+++..+++.|+++++|||||||++|+.+|++.+... .++|.|||+||||++|+||+|+||+|.
T Consensus 953 ~~EA~li~~~~~~fv~sGv~~~dIGIis~YraQv~Li~~~l~~~---------~lEinTVD~yQGRDKd~IivSfvrsn~ 1023 (1100)
T KOG1805|consen 953 HGEAKLISELVEDFVKSGVKPSDIGIISPYRAQVELIRKILSSA---------VLEINTVDRYQGRDKDCIIVSFVRSNK 1023 (1100)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHeeeeehHHHHHHHHHhhcccc---------ceeeeehhhhcCCCCCEEEEEEEecCC
Confidence 99999999999999999999999999999999999999887532 399999999999999999999999998
Q ss_pred CCCcc-CCCCcCceeecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceee
Q psy3251 881 HQGIG-FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVE 934 (959)
Q Consensus 881 ~~~iG-Fl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~ 934 (959)
....| .|.|.||+||||||||..||+||+..+|...+..++|+++..++..+..
T Consensus 1024 ~~~~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~~l~~~l~~~~~l~~ 1078 (1100)
T KOG1805|consen 1024 KSKVGELLKDWRRLNVALTRAKKKLILVGSKSTLESYPPFRQLLKLLENRIELLT 1078 (1100)
T ss_pred cccHHHHHHhhHHHHHHHHhhhceEEEEecccccccCchHHHHHhhhhhhhhHHH
Confidence 76665 6899999999999999999999999999999999999999977766543
No 6
>KOG1807|consensus
Probab=100.00 E-value=4.4e-53 Score=482.05 Aligned_cols=282 Identities=34% Similarity=0.505 Sum_probs=242.4
Q ss_pred HHhhccCceeeeeccccCCcc--cccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeech-hHHhhcC
Q psy3251 638 KSLLDNADVICCTCVGAGDPR--LLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCK-KAARAGL 714 (959)
Q Consensus 638 ~~lL~~a~VI~~T~~~a~~~~--l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~-~a~~~gl 714 (959)
..+++.++||.+|.+|++..+ +.+...++|||.||+.+.|...+-.+...+.++||+|||+||.|..... .+..+++
T Consensus 693 a~llR~a~vigmTTTgaaryr~ilekv~pkivivEEAAEVlEahiIaal~p~~EhviLIGDHKQLrP~~~vy~L~q~fnL 772 (1025)
T KOG1807|consen 693 AFLLREADVIGMTTTGAARYRFILEKVQPKIVIVEEAAEVLEAHIIAALTPHTEHVILIGDHKQLRPFSGVYKLPQIFNL 772 (1025)
T ss_pred HHHhhccceeeeechhHHHHHHHHHHhCCcEEEEhhHhHHhhcchhhhhcccceeEEEecchhhcCCCcchhhHhHhcch
Confidence 468899999999999987655 5677899999999999999987666667789999999999999975443 3456899
Q ss_pred cHHHHHHHHHcCCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccC
Q psy3251 715 SQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGS 794 (959)
Q Consensus 715 ~~SLFeRL~~~g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~ 794 (959)
..|+||||+..|.+-.+|+.||||+|+|+++....||++-+.. .+... .+. .+.-....+|+.++..++.. +
T Consensus 773 ~iSlFERLVe~glpfsrLn~QhRM~p~IsrllvpsiYddl~d~-esvk~--yed----I~gms~nlfFv~hnspee~~-d 844 (1025)
T KOG1807|consen 773 SISLFERLVEAGLPFSRLNLQHRMRPCISRLLVPSIYDDLLDS-ESVKE--YED----IRGMSKNLFFVQHNSPEECM-D 844 (1025)
T ss_pred hHHHHHHHHHcCCChhhhhHHhhhchHHHHHhhHHHhhhhhcc-hhhcc--ccc----cccccceeeEEecCCcccCc-c
Confidence 9999999999999999999999999999999999999965432 22110 100 11224567777777766543 4
Q ss_pred CCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEE
Q psy3251 795 GTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMS 874 (959)
Q Consensus 795 g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS 874 (959)
+.|+.|..||.++++++..|+.+++.+++|.|+|+|.+|...|++.|... ....|.|.|||+|||.|+|||++|
T Consensus 845 e~S~~NlhEa~mlv~l~kyli~q~y~psdIviLttY~gQk~ci~rllp~~------~~stv~VatVDsfQGeEndIVLlS 918 (1025)
T KOG1807|consen 845 EMSIGNLHEAGMLVKLTKYLIQQQYKPSDIVILTTYNGQKECIKRLLPQN------YRSTVQVATVDSFQGEENDIVLLS 918 (1025)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccceEEEeechhHHHHHHHHhHHH------hcCcceEEEeccccCccccEEEEE
Confidence 48999999999999999999999999999999999999999999988653 334699999999999999999999
Q ss_pred ccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccC-CchHHHHHHHHHHcCcee
Q psy3251 875 CVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK-QPLWNNLLNFYKEQKVLV 933 (959)
Q Consensus 875 ~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~-~~~W~~ll~~~~~~~~~v 933 (959)
+||||..+.||||.-++|++|||||||.||+||||...+.. .++|++.++-+++++.+-
T Consensus 919 LVRsn~~griGFL~~anRvCVALSRAr~glyiiGN~q~la~~~pLWnkivntLrenn~Ig 978 (1025)
T KOG1807|consen 919 LVRSNISGRIGFLRQANRVCVALSRARWGLYIIGNVQILADTPPLWNKIVNTLRENNAIG 978 (1025)
T ss_pred EEeccCCceeeeeeccchhhhhhhhhhcceEEecceeecccCchhHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999988 899999999999998764
No 7
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-51 Score=509.89 Aligned_cols=697 Identities=31% Similarity=0.352 Sum_probs=481.1
Q ss_pred ecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCCcceeeeeceeccCCcEEEEEeCCcccccccccccCC
Q psy3251 124 CNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLGFIPAKADSVVVLLCRTPCAAQNSLKDMNW 203 (959)
Q Consensus 124 cn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~~n~f~lgf~~~~~~~~~~~~cr~~c~~~~~~~~~~~ 203 (959)
||.+......|++.|.....+.....+... .....+.|.++..++.|..+....+...+.+..|..+|.......++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (767)
T COG1112 1 ENLKFELLIKKKIENEELSSNLNELTLLIV-IKESLLGCVNNLKRNTFLLEITDLKKKWVEALVRLDKLIKSLPSLLLVR 79 (767)
T ss_pred CCCccccchhHHHHHHhhhccccchhhhhh-hhhhhhhhhhccceeeeecccccchhhhhhhHhccCcccccChhhhhcC
Confidence 355666788999999999999999999998 9999999999999999999999999999999999999998888888888
Q ss_pred CCCCccccccccccccccccCCCHHHhhhccCCCHHHHHHHHHHHhhCcccccccccCCCCCCCccccccccCChHHHHH
Q psy3251 204 DQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEATFQDLEKPGVDEDPHQVLLRYEDGYQYQN 283 (959)
Q Consensus 204 d~~~w~pli~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~le~~w~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~y~~ 283 (959)
+...|..+.+....+.|....+.+.++.........++.+++..+.......+.++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------- 140 (767)
T COG1112 80 DGTLNRELKELIDSLSKKLGKLVEIEQEAEIKTKELEIKKLRLAKRSFKGRAILGLLAKVL------------------- 140 (767)
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHhhhhhhhHhhhhcchhhhccchHhhhhhhhhh-------------------
Confidence 9888999999999999999999999988888888999999998888888888886333211
Q ss_pred hhhhHHHhhhHHHHHHhhhccccceEEEEec-cCCceeEEEEEccccCCCccccccccchhhhhhhhhhhhhhhcccccc
Q psy3251 284 IFGPLVKLEADYDKRLKESQTQENVTVRWDV-GLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQEN 362 (959)
Q Consensus 284 ~f~~lv~~e~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~Y~~~f~pLi~lea~~~~~~kes~~~~n 362 (959)
++.... .+-....+.....+....+.. ...+ .+.-.+
T Consensus 141 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------------------- 178 (767)
T COG1112 141 --GENLGS--EALVKYGRLESYINLEEFVGELVLVS----KLNKIK---------------------------------- 178 (767)
T ss_pred --hhhhhh--hHHHhcccccccCchhhhhhhhhhhc----cccchh----------------------------------
Confidence 111111 000111111001111111100 0000 000000
Q ss_pred eeeeeecccccceeeEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEEEecCCCCCCeEEEEeccCCCCCCCCCcc
Q psy3251 363 VTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSAGAPTEATTG 442 (959)
Q Consensus 363 vtvr~~~~~~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v~~~~~~~~~ev~l~l~~~~~~p~~~~~~ 442 (959)
....+. .+.....+.+..+ .....+......
T Consensus 179 -----------------------------------~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 209 (767)
T COG1112 179 -----------------------------------SELAGL---LIEYLKRLRKVLD-----------KIIPPPLFEKEE 209 (767)
T ss_pred -----------------------------------hccccc---chhhhhhheeecc-----------cccCcccccccc
Confidence 000000 0000000000000 000011111122
Q ss_pred eEEEEeeC------ccHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3251 443 FSVDFIWK------STSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHA 516 (959)
Q Consensus 443 ~~v~~~~~------~~~~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~a 516 (959)
..+++..+ ...+.++...+..+..........+.+...+.......... ...+ ......++..|..++...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~ 286 (767)
T COG1112 210 VRVDIVENLLELSESILLRRELELLSKFALILKRLLESLFEILRGKDLPIKLLDV--ELEL-VEINKELDNEQKLAVKRL 286 (767)
T ss_pred eEEEehhhccccchhHHHHhhhhhhHHHhhcccchhhhHHHHhhccccccccCCc--ceee-eccchhccchhHHHHHHH
Confidence 23333333 55666776666655432222222222222221111000000 0000 112345777888888776
Q ss_pred hc-CCcEE-EEcCCCChHHH--HHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC--CeEEEeecccccccCCch
Q psy3251 517 IQ-RPLSL-IQGPPGTGKTV--TSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG--LKVVRVCAKSREAIDSPV 590 (959)
Q Consensus 517 l~-~~l~L-IqGPPGTGKT~--Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g--l~vvRl~~~sre~i~~~~ 590 (959)
.. ....+ ..||+|||||. ++...+.........+++.++++|.+++.+..++.+.. ...+++++..+.......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (767)
T COG1112 287 LSLNDLFLIHQGPFGTGKTRSVTILELIIELLENNKLKILPTAESNAAVDNLLRRLKRTVIKVELLRIGHPSRVLKKLKL 366 (767)
T ss_pred hcccceeEeecCCCCCCcchHHHHHHHHHHHHHhcccceEEecCcccchhhHHHHHHhhccccceEEcCCcchhhhhhhh
Confidence 54 44444 45999999999 77777777666667899999999999999999998764 446676655442211100
Q ss_pred h---------------HHHHHHHHHhhhh--------hHH---------HHHHHHHHHHhccC-----------------
Q psy3251 591 S---------------FLALHNQIRNMEM--------NSE---------LKKLLQLKEETGEL----------------- 621 (959)
Q Consensus 591 ~---------------~l~l~~~i~~~~~--------~~~---------l~kl~~lk~~~~~l----------------- 621 (959)
. .......+..... ... ..+..........+
T Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 446 (767)
T COG1112 367 DTLEELLEKHEIPGNKIAALDKVIRELREEGERIIREIAKLRERLERKRLDKISHLNVALRGILPALNKSEALWISLEEK 446 (767)
T ss_pred hHHHHHHHhcccccchhHHHHHHHHHHhhhhhccceecHHHHhhhhhhHHHHHHHhhhhhcchhHHHHHHHHHHHhhhhh
Confidence 0 0000000000000 000 00000000000000
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCC
Q psy3251 622 SSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLG 701 (959)
Q Consensus 622 s~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~ 701 (959)
..........+.......+...+++|++|+..++...+....||+||||||+|+++|.+++|+.. ++++|++|||+|||
T Consensus 447 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~fd~viiDEAsQ~~~~~~~~~l~~-~~~~il~GD~kQL~ 525 (767)
T COG1112 447 QKKILKELRRLKKKAVTKILEAADVVLSTLSIAGFSILKKYEFDYVIIDEASQATEPSALIALSR-AKKVILVGDHKQLP 525 (767)
T ss_pred HHhHHHHHhHhHHHHHHHHHHhcCeEEEeccchhHHHhcccccCEEEEcchhcccchhHHHhHhh-cCeEEEecCCccCC
Confidence 00011112222333445667777799999999998888777999999999999999999999988 89999999999999
Q ss_pred ceeechhHHhhcCcHHHHHHHHHcCC-ccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCe
Q psy3251 702 PVVMCKKAARAGLSQSLFERLVVLGI-RPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPM 780 (959)
Q Consensus 702 Pvv~s~~a~~~gl~~SLFeRL~~~g~-~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~ 780 (959)
|++.+......++..++|+++...+. ....|+.||||||.|+.|+|..||+|++..+.............+++.+..|.
T Consensus 526 p~~~~~~~~~~~~~~slf~~~~~~~~~~~~~L~~qyRm~~~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (767)
T COG1112 526 PTVFFKESSPEGLSASLFERLIDNGPEVVYLLRVQYRMHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPL 605 (767)
T ss_pred CeecchhhcccchhHhHHHHHHHhCCchheeeeeecccChhhhhCchhhccCCccccCcchhhhhhhccccccccccCce
Confidence 99987766778899999999999876 78999999999999999999999999998776555443323333333346899
Q ss_pred EEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeec
Q psy3251 781 LFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASV 860 (959)
Q Consensus 781 ~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TV 860 (959)
.++++.+.++ ...+.+..|..||..+..++..+++.++.+.+|||||||++|+..|++.+...+ ..++|.||
T Consensus 606 ~~~~~~~~~~-~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~igvis~y~~q~~~i~~~~~~~~-------~~v~v~tv 677 (767)
T COG1112 606 EFYDTLGAEE-FFESKSKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAG-------KGVEVGTV 677 (767)
T ss_pred EEEEecCccc-ccCccceecHHHHHHHHHHHHHHHHcCCcHHHcceecccHHHHHHHHHHHHhcC-------CceEEeec
Confidence 9999999887 556788999999999999999999999999999999999999999999887553 57999999
Q ss_pred ccCCCccccEEEEEccccCCC-CCccCCCCcCceeecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceeeccCcc
Q psy3251 861 DAFQGREKDLIIMSCVRSNDH-QGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNN 939 (959)
Q Consensus 861 d~fQG~E~DiVIlS~Vrsn~~-~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~~~ 939 (959)
|+|||+|+|+||+|+||++.. +.+||+.|+||||||+||||++|||||+..++..++.|+.++.+++..+++.+....+
T Consensus 678 d~fQG~EkdvIi~S~v~s~~~~~~i~~l~d~rRLNVAlTRAk~~livvg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (767)
T COG1112 678 DGFQGREKDVIILSLVRSNDDKGEIGFLGDPRRLNVALTRAKRKLIVVGSSSTLESDPLYKRLINDLKRKGLLAELNLLD 757 (767)
T ss_pred cccCCccCcEEEEEEEeecCCCccccccCchhhhhhhhhcccceEEEEcChhHhhhchhHHHHHHHHHhcCcEeeccccc
Confidence 999999999999999999988 6999999999999999999999999999999999999999999999999999988554
Q ss_pred hhhh
Q psy3251 940 LKES 943 (959)
Q Consensus 940 l~~~ 943 (959)
...+
T Consensus 758 ~~~~ 761 (767)
T COG1112 758 LRLT 761 (767)
T ss_pred cccc
Confidence 4443
No 8
>KOG1804|consensus
Probab=100.00 E-value=1.5e-39 Score=386.02 Aligned_cols=375 Identities=31% Similarity=0.416 Sum_probs=288.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcCCeEEE-eecccccccCCchhHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTGLKVVR-VCAKSREAIDSPVSFLALH 596 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~gl~vvR-l~~~sre~i~~~~~~l~l~ 596 (959)
.....+.||||||||.++++.++++... +...|++|+++|+|+|+...|++.. .-+-+ .+...+. .+...+.
T Consensus 326 ~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p~~a~~k~~~~rl~~p-~~~~~~~~~~~~~--~~~~~~~--- 399 (775)
T KOG1804|consen 326 PEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAPSNASGKQPAHRLHYP-LTFSTARGEDVRA--KSSTAWY--- 399 (775)
T ss_pred ccccccccCCCcCCccchHHHHHHHHhcchHHHhhccccccccccccccccccc-ccccccccccccc--cchhHHh---
Confidence 4678999999999999988777666544 4568999999999999999998421 11111 0000000 0000000
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcc---cccCCcCEEEEECCC
Q psy3251 597 NQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPR---LLKIKFHSILIDESM 673 (959)
Q Consensus 597 ~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~---l~~~~fd~VIIDEAs 673 (959)
. ..+.. ....+-.+...+....++++||.++|.-. ..-.+|.++++|||+
T Consensus 400 ---~-------~~~v~-----------------~~~~~~e~~~~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~DeAg 452 (775)
T KOG1804|consen 400 ---N-------NAEVS-----------------EVVEKVEELRKVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDEAG 452 (775)
T ss_pred ---h-------hHHHH-----------------HHHHHHHHHhhccceEEEEeeccceeeeecccccccceeeeeecccc
Confidence 0 00000 00001111113556788999998876432 344589999999999
Q ss_pred CCChhhhHhhhhh--cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC------------CccEEeccccCCc
Q psy3251 674 QATEPECMVPVIL--GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG------------IRPFRLEVQYRMH 739 (959)
Q Consensus 674 Q~~Epe~Lipl~~--~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g------------~~~~~L~~qYRmh 739 (959)
+++||++++|+.. ...++||.|||+||+|++.+..+...|++.|||+|+.... ...+.|-.|||+|
T Consensus 453 ~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrsh 532 (775)
T KOG1804|consen 453 VSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEELGLDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSH 532 (775)
T ss_pred cccCcccccccccccceeEEEEccCcccccccccchhhhhhcccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhh
Confidence 9999999999974 2348999999999999999999999999999999998641 2246799999999
Q ss_pred hhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcC-
Q psy3251 740 PELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCG- 818 (959)
Q Consensus 740 p~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g- 818 (959)
|.|...+|++||.+.|.......+.... .-|. ..++|+.+.|..+.+.+..|+.|..||..|..++..+....
T Consensus 533 p~il~l~~~l~y~~eL~~~~~~~~v~~~---~~w~---~liif~g~~G~~~r~~~s~S~~n~~Ea~~V~~~~k~l~~~~~ 606 (775)
T KOG1804|consen 533 PIILCLENRLYYLGELTAEASEVDVRGL---ELWS---GLILFYGAPGFTERAGNSPSWLNLEEAAVVVRMTKALPLGEV 606 (775)
T ss_pred hHhhhcccccccccceeeeccHHHHHHH---Hhcc---cceeccccccccccccCChhhccHHHHHHHHHHHhccCCCCc
Confidence 9999999999999999754433322211 1232 33899999999999999999999999999988887776543
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCC------CccCCCCcCc
Q psy3251 819 MKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQ------GIGFLNDPRR 892 (959)
Q Consensus 819 ~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~------~iGFl~d~rR 892 (959)
..+.||||||||++|+..|+.++...+ ..++.|++|..|||+|+.+||+|+|||.... .-+|+.++++
T Consensus 607 ~~~~DIgvitpy~aq~~~i~~~l~~~~------~~~~~vgsVe~fqGqE~~viiiStVrS~~~~~~~~~~~~~fls~pk~ 680 (775)
T KOG1804|consen 607 AQPQDIGVITPYTAQVSEIRKALRRLG------VPGVKVGSVEEFQGQEPWVILGSTVRSFALPLLDDRYFGLFLSRPKR 680 (775)
T ss_pred cccccceeeCcHHHHHHHHHHHhcccC------CCCCcccceeeeccccceeeEeecccccCCCcccccccceeecCccc
Confidence 445699999999999999999887543 5689999999999999999999999998642 1238999999
Q ss_pred eeecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceeeccCc
Q psy3251 893 LNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLN 938 (959)
Q Consensus 893 LNVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~~ 938 (959)
||||+|||+..++++|++..+...+.|..++-++.++|.+...++.
T Consensus 681 l~v~V~rp~~l~i~~~~~h~~~~~~~~~~~l~~~~~n~~y~~c~~~ 726 (775)
T KOG1804|consen 681 LLVAVGRPRALLINLGNPHLLGGDPPWGLLLLLRVENGRYPGCDFP 726 (775)
T ss_pred ceeeccCccccccccCCcccccCCCChhhheeeeecCCcccCCCCC
Confidence 9999999999999999999999999999999999999988766555
No 9
>KOG1801|consensus
Probab=100.00 E-value=7.1e-38 Score=385.39 Aligned_cols=294 Identities=36% Similarity=0.489 Sum_probs=251.0
Q ss_pred ccCceeeeeccccCCccc--ccCCcCEEEEECCCCCChhhhHhhhhh-cCCeEEEEccCCCCCceeechhHHhhcCcHHH
Q psy3251 642 DNADVICCTCVGAGDPRL--LKIKFHSILIDESMQATEPECMVPVIL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSL 718 (959)
Q Consensus 642 ~~a~VI~~T~~~a~~~~l--~~~~fd~VIIDEAsQ~~Epe~Lipl~~-~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SL 718 (959)
+.+.+|++|+.+.+.... ....|+.|+||||+|+.||+.++||.+ +..+.+++||+.|||++|.+..+..+++..|+
T Consensus 513 ~~a~~i~~t~~~~~~~~~~~~~~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~~qlP~~V~s~~~~~~k~~~sl 592 (827)
T KOG1801|consen 513 EEAALIVPTTRGSRIVLTLYGGPPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDLAQLPATVHSSPAGCFKYMTSL 592 (827)
T ss_pred ccceeEeecccccceEeecccCCCceEEEEehhhhhcCccchhhhhhcCCceEEEecccccCChhhccchhccccchhhH
Confidence 388999999998776433 334899999999999999999999998 88999999999999999999999999999999
Q ss_pred HHHHHHcCCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcC-CcceeccCCCc
Q psy3251 719 FERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQ-GQEEIAGSGTS 797 (959)
Q Consensus 719 FeRL~~~g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~-g~ee~~~~g~S 797 (959)
|+|+...+.+...|++||||||+|+.||+..||+++|..+....+......... .....|+.|+++. |.|.... +.|
T Consensus 593 f~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~-~~~~~~y~f~~v~~g~e~~~~-~~s 670 (827)
T KOG1801|consen 593 FERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGGRLKDVNNVSESNTVKLWHS-GETFGPYPFFNVHYGKERAGG-GKS 670 (827)
T ss_pred HHHHHHccCccceecceeecCCccccCccccccccccccCcccchhhccccCcC-CCccCceEEEEecccccccCC-CCC
Confidence 999999999999999999999999999999999999887766654443322221 2234677777766 7666544 489
Q ss_pred ccCHHHHHHHHHHHHHHHHc----CCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEE
Q psy3251 798 YVNRTEASNVEKITTRFIRC----GMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIM 873 (959)
Q Consensus 798 ~~N~~EA~~V~~iv~~Ll~~----g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIl 873 (959)
..|..|+..+..++..+.+. +..+..+|||+||+.|+..+++.+.............+.+.|||+|||.|.|+||+
T Consensus 671 ~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~v~tvD~fqg~e~diii~ 750 (827)
T KOG1801|consen 671 PVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLSVSTVDSFQGGERDIIII 750 (827)
T ss_pred cccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeEEEecccccCCCCceeEE
Confidence 99999999999999998863 33477899999999999999987765433222223479999999999999999999
Q ss_pred EccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccCCch-HHHHHHHHHHcCceeeccC
Q psy3251 874 SCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPL-WNNLLNFYKEQKVLVEGPL 937 (959)
Q Consensus 874 S~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~~~-W~~ll~~~~~~~~~v~g~~ 937 (959)
||||++..+.+||+.+.+|+|||+||||.+++++||...|..... |..++.-.+.+||+.+...
T Consensus 751 s~vrs~~~g~igf~~~~~RlnvALtra~~~l~v~Gne~~L~~~~~~w~~li~da~~r~~~~~~~~ 815 (827)
T KOG1801|consen 751 STVRSIDEGSIGFECNLRRLNVALTRARTCFWLVGNEITLAPSCSIWASLILDAKGRGCFMDRAA 815 (827)
T ss_pred EEEEecccCccchhhhHHHHHHhhcccccceEEecCccccccccchhhhhcchhccccccccccc
Confidence 999999999999999999999999999999999999999998776 9999999999999988754
No 10
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=100.00 E-value=5e-36 Score=312.89 Aligned_cols=195 Identities=42% Similarity=0.718 Sum_probs=142.1
Q ss_pred CcHHHHHHHHHcC-CccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceec
Q psy3251 714 LSQSLFERLVVLG-IRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIA 792 (959)
Q Consensus 714 l~~SLFeRL~~~g-~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~ 792 (959)
++.|||+|++..+ .+.+.|++||||||+|++|+|..||+|.|.++.+...+... .....+....|+.|+++.|.+...
T Consensus 1 ~~~Slferl~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~~~~~~~ 79 (200)
T PF13087_consen 1 LDRSLFERLIKNGSVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAP-LLKLLPSPQNPIVFIDVSGSESSS 79 (200)
T ss_dssp TTS-HHHHHHHCT----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T------SSTTSSEEEEE----EEEE
T ss_pred CCccHHHHHHHcCCCCceecccccCCCHHHHHHHHHHHhchhcccCccccccccc-ccccccCCCCceEEEecccccccc
Confidence 4689999999998 89999999999999999999999999999987765544332 222345667889999999988776
Q ss_pred cCC-CcccCHHHHHHHHHHHHHHHHcCCCC---CcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccc
Q psy3251 793 GSG-TSYVNRTEASNVEKITTRFIRCGMKP---EQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREK 868 (959)
Q Consensus 793 ~~g-~S~~N~~EA~~V~~iv~~Ll~~g~~~---~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~ 868 (959)
..+ +|+.|..||+.+++++..|+..+... .+|||||||++|+.+|++.|........ ...+.|+|||+|||+|+
T Consensus 80 ~~~~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~--~~~~~v~Tvd~~QG~E~ 157 (200)
T PF13087_consen 80 ESSQTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKALRSRYPSSP--IKDIKVSTVDSFQGQEA 157 (200)
T ss_dssp TTC-SCEEEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHHHHHCSTCHH--HHCSEEEEHHHHTT--E
T ss_pred cccccceechhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHHHhhhccccc--cceEEEecHHHhccccc
Confidence 654 89999999999999999999988765 8999999999999999999986543211 11299999999999999
Q ss_pred cEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEccc
Q psy3251 869 DLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPK 911 (959)
Q Consensus 869 DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~ 911 (959)
|+||+|+|+++....+||+.+++|+|||+||||++||||||++
T Consensus 158 diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~liiig~~~ 200 (200)
T PF13087_consen 158 DIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLIIIGNPE 200 (200)
T ss_dssp EEEEEEE---STTS-SGGGC-HHHHHHHHTSEEEEEEEEE-H-
T ss_pred eEEEEEeccCCccccccccCCcCeeeeeHHHHhcCEEEEecCC
Confidence 9999999999977889999999999999999999999999963
No 11
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.97 E-value=9.8e-32 Score=285.16 Aligned_cols=202 Identities=37% Similarity=0.563 Sum_probs=127.7
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHH-------HccCCCEEEEcccHHHHHHHHHHHHh-----
Q psy3251 504 DLNRSQVYAVKHAIQRPL-SLIQGPPGTGKTVTSATIVYQLV-------KQTGSPVLVCAPSNIAVDQLTEKIHR----- 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l-~LIqGPPGTGKT~Tia~ii~~Ll-------~~~~~rILV~ApSN~AvD~L~erL~~----- 570 (959)
.||++|++||..++.++. ++|+||||||||+|++.++..++ ...+.+||+||+||.|+|++.+++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~~~~~ 80 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKLLDED 80 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhhcccc
Confidence 489999999999998876 99999999999999999998883 23678999999999999999999998
Q ss_pred ---cCCeEEEeecccccccCCchhHHHHHHHHHhhhh------hHHHHH------HHHHHHHhccCChH---HHHHHHHH
Q psy3251 571 ---TGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEM------NSELKK------LLQLKEETGELSSA---DEKRYRML 632 (959)
Q Consensus 571 ---~gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~------~~~l~k------l~~lk~~~~~ls~~---~~k~~~~l 632 (959)
...+++|++... +.....+....+...+..... ....++ ...+......+... ..+.+...
T Consensus 81 ~~~~~~~~ir~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (236)
T PF13086_consen 81 GKVYKPKIIRLGSEE-EKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKELEKI 159 (236)
T ss_dssp ---TT--EEE---GG-TTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHHHHH
T ss_pred ccccccchhhhcccc-cccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhccccccccccc
Confidence 356799999876 122222222222222222110 000011 11112222222222 22334444
Q ss_pred HHHHHHHhhccCceeeeeccccCCcccccC--CcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeec
Q psy3251 633 KKNAEKSLLDNADVICCTCVGAGDPRLLKI--KFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMC 706 (959)
Q Consensus 633 ~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~--~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s 706 (959)
.+.....++..++||++|+.++....+... .||+||||||+|++|+++|+|+..+++++||||||+||||++.+
T Consensus 160 ~~~~~~~~l~~~~vi~~T~~~~~~~~~~~~~~~~d~vIvDEAsq~~e~~~l~~l~~~~~~~vlvGD~~QLpP~v~s 235 (236)
T PF13086_consen 160 REELRRFILKEADVIFTTLSSAASPFLSNFKEKFDVVIVDEASQITEPEALIPLSRAPKRIVLVGDPKQLPPVVKS 235 (236)
T ss_dssp HHHHHHHHHHT-SEEEEETCGGG-CCGTT-----SEEEETTGGGS-HHHHHHHHTTTBSEEEEEE-TTS-----S-
T ss_pred ccchhhhhcccccccccccccchhhHhhhhcccCCEEEEeCCCCcchHHHHHHHHHhCCEEEEECChhhcCCeeCC
Confidence 555667889999999999999977777666 89999999999999999999998878999999999999999876
No 12
>KOG1806|consensus
Probab=99.97 E-value=7e-32 Score=316.07 Aligned_cols=425 Identities=28% Similarity=0.387 Sum_probs=303.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcCCe---EE
Q psy3251 501 NLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTGLK---VV 576 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~gl~---vv 576 (959)
+....|+.|.+|+.+..+.+++.+.||||||||.+++.++..+..+ +..+.|+++.||.|...+-+++.+...+ .+
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~rhLl 814 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDERHLL 814 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccchhhHH
Confidence 3446799999999999999999999999999999999999888876 7789999999999999999999875443 33
Q ss_pred EeecccccccCCchh-------------HHHHHHHHHhhh-----------------------hh----HHHHHHH----
Q psy3251 577 RVCAKSREAIDSPVS-------------FLALHNQIRNME-----------------------MN----SELKKLL---- 612 (959)
Q Consensus 577 Rl~~~sre~i~~~~~-------------~l~l~~~i~~~~-----------------------~~----~~l~kl~---- 612 (959)
|+++...+ .+...+ -+.+...++.+. .. ..+.++.
T Consensus 815 rlg~ge~e-letd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~ytcetagyf~~~~V~~~wee~l~~v~~~~~ 893 (1320)
T KOG1806|consen 815 RLGHGEEE-LETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVDYTCETAGYFFLAYVKRRWEEYLAKVDKGCD 893 (1320)
T ss_pred HhcccHHh-hhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccccccchhhhhhhhHHHhhhHHHHHHhccCCC
Confidence 43321110 000000 000111111000 00 0000110
Q ss_pred -----------HHHHHhccCCh-------------HHHHHHHHHHH-------------------HHHHHhhccCceeee
Q psy3251 613 -----------QLKEETGELSS-------------ADEKRYRMLKK-------------------NAEKSLLDNADVICC 649 (959)
Q Consensus 613 -----------~lk~~~~~ls~-------------~~~k~~~~l~~-------------------~~e~~lL~~a~VI~~ 649 (959)
-..+..++.+. ..+..|+.+.. .....+.+.|.+|.+
T Consensus 894 ~~~~~~~~~~fpf~~~f~d~p~~vfeg~n~~~d~~~a~~cf~hl~~ifqqLee~rafellr~~~dr~~Yll~kqakiiam 973 (1320)
T KOG1806|consen 894 KDSVDIVSNRFPFHSYFGDKPKPPFEGYNKENDMDYATGCFRHLEYIFQQLEEFRAFELLRSGEDRELYLLVKQAKIIAM 973 (1320)
T ss_pred chhhhhHhhhCcchhhhhcCCCccccccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccchhHhhccCcccceeeec
Confidence 00000000000 00111221111 112334578999999
Q ss_pred eccccCCcc--c--ccCCcCEEEEECCCCCChhhhHhhhhhc--------CCeEEEEccCCCCCceeechh-HHhhcCcH
Q psy3251 650 TCVGAGDPR--L--LKIKFHSILIDESMQATEPECMVPVILG--------AKQLILVGDHCQLGPVVMCKK-AARAGLSQ 716 (959)
Q Consensus 650 T~~~a~~~~--l--~~~~fd~VIIDEAsQ~~Epe~Lipl~~~--------~krvVLVGD~~QL~Pvv~s~~-a~~~gl~~ 716 (959)
||..++..+ + ..++||-+++.|++|+.|.+..+|+++. -+++|++|||.|+||++.... .......+
T Consensus 974 tcthaalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqkysnm~q 1053 (1320)
T KOG1806|consen 974 TCTHAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKYSNMEQ 1053 (1320)
T ss_pred ccCChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHHhcchh
Confidence 999887554 2 3568999999999999999999998863 378999999999999996543 34456779
Q ss_pred HHHHHHHHcCCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEc---CCcceecc
Q psy3251 717 SLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVT---QGQEEIAG 793 (959)
Q Consensus 717 SLFeRL~~~g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~---~g~ee~~~ 793 (959)
|+|.|+...+++.+.|+.|+|..+.|+++.+..+-.-..-.++.+..+.. ........+..|+++ .|..+...
T Consensus 1054 slf~r~vRl~ip~i~lnaqgrar~sI~~Ly~wry~lLg~l~~v~~lp~f~----~aNagf~~~~qlinv~Df~g~gEt~p 1129 (1320)
T KOG1806|consen 1054 SLFTRLVRLGVPIIDLNAQGRARASIASLYNWRYPLLGNLPHVSPLPRFQ----YANAGFAYEFQFINVPDFKGSGETEP 1129 (1320)
T ss_pred hhhhcceecccceecchhhhhHHHHHHHHHHhhhcccccCcCCccchhhh----ccccCceeeEEEecchhhccccccCC
Confidence 99999999999999999999999999999876543211112222211110 000111234555544 46667667
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEE
Q psy3251 794 SGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIM 873 (959)
Q Consensus 794 ~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIl 873 (959)
+...+.|..||+.++.+..++...|++.+.|.|+|.|++|+..|++.+..+.....-....-+|.|||.|||+..|+||+
T Consensus 1130 ~p~fyQnlgeaey~vAly~YMr~Lgypa~Kisilttyngq~~lirdii~rrc~~nPfig~pAkv~tvdk~qgqqndfiIl 1209 (1320)
T KOG1806|consen 1130 SPGFYQNLGEAEYAVALFQYMRLLGYPANKISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKVTTVDKFQGQQNDFIIL 1209 (1320)
T ss_pred CcccccCCchhhhHHHHHHHHHHhCCchhHeeEEEeecchHHHHHHHHHHhccCCCccCCcccCCccccccccccceEEe
Confidence 77789999999999999999999999999999999999999999999988776665566678899999999999999999
Q ss_pred EccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccC----CchHHHHHHHHHHcCcee
Q psy3251 874 SCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK----QPLWNNLLNFYKEQKVLV 933 (959)
Q Consensus 874 S~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~----~~~W~~ll~~~~~~~~~v 933 (959)
|+||+. .+|.++|.||+.||++|||.||+++|....+.+ .+.|+.|.+.-.....+.
T Consensus 1210 slv~tr---~~gh~rdvrrlvva~srarlglyv~~r~~lf~~c~eLtp~~~~l~k~p~~lll~~ 1270 (1320)
T KOG1806|consen 1210 SLVRTR---EVGHLRDVRRLVVAMSRARLGLYVLCRRSLFRSCRELTPAFNELEKRPDKLLLTP 1270 (1320)
T ss_pred eehhhh---hhhhhccHHHHHHHHHHhhccchhHHHHHHHHHHHhccHHHHHHhhCcchhcccc
Confidence 999995 478899999999999999999999999988765 788988877655555444
No 13
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.95 E-value=3.7e-27 Score=285.53 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=140.0
Q ss_pred CcCEEEEECCCCCChhhh-Hhhhhh---cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc-C-CccEEecccc
Q psy3251 663 KFHSILIDESMQATEPEC-MVPVIL---GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-G-IRPFRLEVQY 736 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe~-Lipl~~---~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~-g-~~~~~L~~qY 736 (959)
.|++|+|||+++++..+. |+.... ...++++|||+.|-.. ...|-..+++..+... + ...+.|+++|
T Consensus 430 ~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY-------~frGa~~~~~~~f~~~f~~~~~~~L~~nY 502 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIY-------RFSGADLSLTTAFHERFGEGDRCHLDTTY 502 (684)
T ss_pred cccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCcccc-------ccCCCChHHHHHHHhhcCCCeEEEeCCCC
Confidence 699999999999987763 333222 2468999999999322 2334445555554432 2 3467899999
Q ss_pred CCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHH
Q psy3251 737 RMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIR 816 (959)
Q Consensus 737 Rmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~ 816 (959)
|++++|.+++|.++-.+.-+ ... .+. +...+..|.+..... .+.+.+...+..+..
T Consensus 503 Rs~~~I~~~An~~i~~n~~~-----~~k---~l~-s~~~g~~p~v~~~~~---------------~~~~~il~~l~~~~~ 558 (684)
T PRK11054 503 RFNSRIGEVANRFIQQNPHQ-----LKK---PLN-SLTKGDKKAVTLLPE---------------DQLEALLDKLSGYAK 558 (684)
T ss_pred CCCHHHHHHHHHHHHhCccc-----cCC---ccc-ccCCCCCceEEEeCC---------------HHHHHHHHHHHHhhc
Confidence 99999999999876432110 000 000 111223343333211 234444444444432
Q ss_pred cCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCC--C------------
Q psy3251 817 CGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDH--Q------------ 882 (959)
Q Consensus 817 ~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~--~------------ 882 (959)
+.++|+||++|+.+...+.+.+... + ...+|.+.|+|++||+|+|+||+..+.+... +
T Consensus 559 ---~~~~I~IL~R~~~~~~~~l~~~~~~--~---~~~~i~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~ 630 (684)
T PRK11054 559 ---PDERILLLARYHHLRPALLDKAATR--W---PKLQIDFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEAL 630 (684)
T ss_pred ---CCCcEEEEEechhhHHHHHHHHHhh--c---ccCCeEEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcc
Confidence 4679999999998876554444322 1 1137999999999999999999987764320 0
Q ss_pred ---Ccc--CCCCcCceeecchhhcccEEEEEccccccCCchHHHHHHHHHHcC
Q psy3251 883 ---GIG--FLNDPRRLNVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQK 930 (959)
Q Consensus 883 ---~iG--Fl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~ 930 (959)
.-. .-.++|++|||+||||+.|+|+.+... ...|++.+.+.+
T Consensus 631 ~~~~~~~~~~eERRLlYVAlTRAr~~l~i~~~~~~------~S~fv~el~~~~ 677 (684)
T PRK11054 631 LPPPEDFPDAEERRLLYVALTRAKHRVWLLFNKGN------PSPFVEELKNLD 677 (684)
T ss_pred cccccccccHHHHHHHHHHhhhhhcEEEEEEcCCC------CCHHHHHHhhCC
Confidence 001 123589999999999999999987431 245555555444
No 14
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.95 E-value=7.1e-27 Score=279.00 Aligned_cols=244 Identities=23% Similarity=0.300 Sum_probs=141.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH
Q psy3251 459 LALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT 538 (959)
Q Consensus 459 ~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ 538 (959)
.+|.+|+..|..+...|.++......++......+...|... ....+.|+.|+..++.+++++|+||||||||||++.
T Consensus 109 lYl~ry~~~E~~iA~~l~~~~~~~~~~~~~~~~~l~~lf~~~--~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ 186 (615)
T PRK10875 109 LYLQRMWQNERTVARFFNEVNHAIEVDEALLRQTLDALFGPV--TDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAK 186 (615)
T ss_pred EEeHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHhcCcC--CCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 345556666777777776553221122111111111223211 124579999999999999999999999999999999
Q ss_pred HHHHHHHcc---CCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHH
Q psy3251 539 IVYQLVKQT---GSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLK 615 (959)
Q Consensus 539 ii~~Ll~~~---~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk 615 (959)
++..+.+.. ..+|+++|||++|+.+|.+++.....++- +....+..+ +..-.++|..+......
T Consensus 187 ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~~~~~~~~~--~~~a~TiHrlLg~~~~~---------- 253 (615)
T PRK10875 187 LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLP-LTDEQKKRI--PEEASTLHRLLGAQPGS---------- 253 (615)
T ss_pred HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-cchhhhhcC--CCchHHHHHHhCcCCCc----------
Confidence 998887642 35799999999999999999864311110 000000000 01112333222110000
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEEECCCCCChhhh--HhhhhhcCCeEEE
Q psy3251 616 EETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPEC--MVPVILGAKQLIL 693 (959)
Q Consensus 616 ~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ~~Epe~--Lipl~~~~krvVL 693 (959)
.......-....+|+||||||+|+..+.+ |+..+....|+||
T Consensus 254 ------------------------------------~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 254 ------------------------------------QRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIF 297 (615)
T ss_pred ------------------------------------cchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEE
Confidence 00000111234789999999999987653 3444445689999
Q ss_pred EccCCCCCceeechhHHh------hcCcHHHHHHHHHc-----------CCcc-----EEeccccCCc--hhHhhhhhhh
Q psy3251 694 VGDHCQLGPVVMCKKAAR------AGLSQSLFERLVVL-----------GIRP-----FRLEVQYRMH--PELSKFPSNF 749 (959)
Q Consensus 694 VGD~~QL~Pvv~s~~a~~------~gl~~SLFeRL~~~-----------g~~~-----~~L~~qYRmh--p~I~~f~s~~ 749 (959)
|||++|||||-.+..... .++.....+.+... ..++ ++|+++||.. ..|..++...
T Consensus 298 vGD~~QL~sV~~G~VL~DL~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Rf~~~SgI~~lA~~I 377 (615)
T PRK10875 298 LGDRDQLASVEAGAVLGDICRFAEAGYSAERAQQLSRLTGCHLPAGTGTEAASVRDSLCLLRKSYRFGSDSGIGQLAAAV 377 (615)
T ss_pred ecchhhcCCCCCCchHHHHHHhhhcccchhhhhHHhhhccccccccccccCCccccceeecceeecCCCCCcHHHHHHHH
Confidence 999999999965543221 22222222222110 1122 5899999985 5688886654
Q ss_pred hccCC
Q psy3251 750 FYEGS 754 (959)
Q Consensus 750 fY~g~ 754 (959)
..|.
T Consensus 378 -~~G~ 381 (615)
T PRK10875 378 -NRGD 381 (615)
T ss_pred -HCCC
Confidence 4443
No 15
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.95 E-value=6.6e-27 Score=288.39 Aligned_cols=303 Identities=19% Similarity=0.236 Sum_probs=171.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc-CCe--EE
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT-GLK--VV 576 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~-gl~--vv 576 (959)
..||++|++||... .+..+|.|+||||||+|+++++.+|+.. ++.+||++||||+||++|.+|+.+. +.. -+
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~~ 85 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGGM 85 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCCC
Confidence 36999999999754 6778999999999999999999999974 4678999999999999999999764 111 01
Q ss_pred Eeecc---c----cc-----------ccCCchhHHH-HHHHHHhhhhh------HHH-HHHHHHHHHhccCChHH-----
Q psy3251 577 RVCAK---S----RE-----------AIDSPVSFLA-LHNQIRNMEMN------SEL-KKLLQLKEETGELSSAD----- 625 (959)
Q Consensus 577 Rl~~~---s----re-----------~i~~~~~~l~-l~~~i~~~~~~------~~l-~kl~~lk~~~~~ls~~~----- 625 (959)
.++.- . ++ .+-...+... +...+..+... ... ..+...+.. .+...+
T Consensus 86 ~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--~~~~~~~~~~~ 163 (721)
T PRK11773 86 WVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDE--GLRPQHIQSYG 163 (721)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHc--CCCHHHHHhcc
Confidence 11100 0 00 0000000000 00001100000 000 000111110 000000
Q ss_pred -------HHHHHHHHHHH-HHHhhccCceeeeeccccC-Cccc---ccCCcCEEEEECCCCCChhhh-Hhhhh-hcCCeE
Q psy3251 626 -------EKRYRMLKKNA-EKSLLDNADVICCTCVGAG-DPRL---LKIKFHSILIDESMQATEPEC-MVPVI-LGAKQL 691 (959)
Q Consensus 626 -------~k~~~~l~~~~-e~~lL~~a~VI~~T~~~a~-~~~l---~~~~fd~VIIDEAsQ~~Epe~-Lipl~-~~~krv 691 (959)
..-|....... +...++..+++..+..... ++.+ .+.+|++|+|||+++++..+. |+..+ ....++
T Consensus 164 ~~~~~~~~~iy~~Y~~~~~~~~~~DfdDll~~~~~lL~~~~~~~~~~~~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l 243 (721)
T PRK11773 164 DPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYQERFTHILVDEFQDTNAIQYAWIRLLAGDTGKV 243 (721)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEchhcCCHHHHHHHHHHhCCCCeE
Confidence 01111111111 1123444444444433221 2222 134899999999999987773 33333 345789
Q ss_pred EEEccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCC
Q psy3251 692 ILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKI 769 (959)
Q Consensus 692 VLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~ 769 (959)
++|||++| ......|-....|.++... +...+.|..|||+++.|.+++|.++-.+.-..+.
T Consensus 244 ~vVGD~dQ-------sIY~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~r~~k---------- 306 (721)
T PRK11773 244 MIVGDDDQ-------SIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTANILKAANALIANNNGRLGK---------- 306 (721)
T ss_pred EEEecCcc-------cccccCCCChHHHHHHHHhCCCCeEEECCcCCCCCHHHHHHHHHHHHhcccccCc----------
Confidence 99999999 2222344455555555432 3456899999999999999999988654321100
Q ss_pred CCCCCC--CCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHH
Q psy3251 770 DFPWPV--PDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQ 839 (959)
Q Consensus 770 ~~~~p~--~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~ 839 (959)
..|+. .+.++.++.. .....||..|++.|..++..|+++++|+||++.+.|...+.+
T Consensus 307 -~~~~~~~~g~~v~~~~~------------~~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~ 365 (721)
T PRK11773 307 -ELWTDGGDGEPISLYCA------------FNELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEE 365 (721)
T ss_pred -ccccCCCCCCeeEEEeC------------CCHHHHHHHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHH
Confidence 01111 1122222221 113568999999999999889999999999876665444443
No 16
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=99.95 E-value=7.9e-27 Score=287.81 Aligned_cols=305 Identities=19% Similarity=0.225 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhcCC---eEE
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRTGL---KVV 576 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~gl---~vv 576 (959)
..||++|++||... .+..+|.|+||||||+|++.+|.+|+.. ++.+||++||||+||++|.+||.+... .-+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~~ 80 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGM 80 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcccccCc
Confidence 46999999999754 6778999999999999999999999975 467899999999999999999976411 111
Q ss_pred Eeeccc-------cc-----------ccCCchhHHHHH-HHHHhhhhh------HHH-HHHHHHHHHhc------cCChH
Q psy3251 577 RVCAKS-------RE-----------AIDSPVSFLALH-NQIRNMEMN------SEL-KKLLQLKEETG------ELSSA 624 (959)
Q Consensus 577 Rl~~~s-------re-----------~i~~~~~~l~l~-~~i~~~~~~------~~l-~kl~~lk~~~~------~ls~~ 624 (959)
.++.-. ++ .+-...+...+. ..+...... ..+ ..+...+.... .....
T Consensus 81 ~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 160 (715)
T TIGR01075 81 WIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAMWYINNQKDEGLRPSHIQAFDNP 160 (715)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHCCCCHHHHHhccCh
Confidence 111100 00 000000000000 001100000 000 00111111000 00000
Q ss_pred HH----HHHHHHHHHH-HHHhhccCceeeeeccccC-Ccccc---cCCcCEEEEECCCCCChhhh-Hhhhh-hcCCeEEE
Q psy3251 625 DE----KRYRMLKKNA-EKSLLDNADVICCTCVGAG-DPRLL---KIKFHSILIDESMQATEPEC-MVPVI-LGAKQLIL 693 (959)
Q Consensus 625 ~~----k~~~~l~~~~-e~~lL~~a~VI~~T~~~a~-~~~l~---~~~fd~VIIDEAsQ~~Epe~-Lipl~-~~~krvVL 693 (959)
.. .-|....... ....++..+++..+..... ++.+. ..+|++|+|||+++++..+. |+..+ ...+++++
T Consensus 161 ~~~~~~~iy~~Y~~~~~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~l~v 240 (715)
T TIGR01075 161 VERTWIKIYQAYQEACDRAGLVDFAELLLRAHELLRNKPHILQHYQERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMI 240 (715)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEccccCCHHHHHHHHHHhCCCCeEEE
Confidence 00 1111111111 1113333344433332221 12221 34899999999999988773 33333 34578999
Q ss_pred EccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCC
Q psy3251 694 VGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF 771 (959)
Q Consensus 694 VGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~ 771 (959)
|||++| ......|-+...|.++... +...+.|+.|||+++.|.+++|.++-.+.-..+ . .
T Consensus 241 VGD~~Q-------sIY~fRGA~~~~i~~f~~~~~~~~~~~L~~NyRS~~~Il~~an~li~~~~~r~~-----~------~ 302 (715)
T TIGR01075 241 VGDDDQ-------SIYGWRGAQVENIQKFLKDFPGAETIRLEQNYRSTANILAAANALIANNDERLG-----K------N 302 (715)
T ss_pred EeCCcc-------cccccCCCCHHHHHHHHHhCCCCeEEECcccCCCCHHHHHHHHHHHHhcccccc-----c------c
Confidence 999999 1222344455555555432 235689999999999999999998865421110 0 0
Q ss_pred CCCC--CCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHH
Q psy3251 772 PWPV--PDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQ 839 (959)
Q Consensus 772 ~~p~--~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~ 839 (959)
.|.. .+.++.++... ....||..|++.+..++..|+++++|+||++.+.|...+.+
T Consensus 303 ~~~~~~~g~~i~~~~~~------------~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~ 360 (715)
T TIGR01075 303 LWTDGEVGEPISLYSAF------------NELDEARFVVSRIKTWQRNGGALDECAVLYRSNAQSRVLEE 360 (715)
T ss_pred ccCCCCCCCceEEEeCC------------CHHHHHHHHHHHHHHHHHcCCCccCEEEEEecCchHHHHHH
Confidence 1111 11222222211 12468999999999999889999999998776555444433
No 17
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.94 E-value=3.9e-26 Score=272.31 Aligned_cols=194 Identities=22% Similarity=0.253 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccC----CCEEEEcccHHHHHHHHHHHHhcCCeEEEeeccc
Q psy3251 507 RSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTG----SPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKS 582 (959)
Q Consensus 507 ~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~----~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~s 582 (959)
+.|+.|+..++.+++++|+||||||||||++.++..|.+..+ .+|+++|||++|+.+|.+.+.....++ ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l---~~~~ 224 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL---AAAE 224 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc---ccch
Confidence 689999999999999999999999999999999988776422 579999999999999999986532111 0000
Q ss_pred ccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccC
Q psy3251 583 REAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662 (959)
Q Consensus 583 re~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~ 662 (959)
......+....++|..+..... + .......-...
T Consensus 225 ~~~~~~~~~a~TiHrlLg~~~~---------------------------------------------~-~~~~~~~~~~l 258 (586)
T TIGR01447 225 ALIAALPSEAVTIHRLLGIKPD---------------------------------------------T-KRFRHHERNPL 258 (586)
T ss_pred hhhhccccccchhhhhhcccCC---------------------------------------------c-chhhhcccCCC
Confidence 0000000111222222110000 0 00000011224
Q ss_pred CcCEEEEECCCCCChhhh--HhhhhhcCCeEEEEccCCCCCceeechhHHh------hcCcHHHHHHHH-----H----c
Q psy3251 663 KFHSILIDESMQATEPEC--MVPVILGAKQLILVGDHCQLGPVVMCKKAAR------AGLSQSLFERLV-----V----L 725 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe~--Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~------~gl~~SLFeRL~-----~----~ 725 (959)
.+|+||||||||+..+.. |+..+....|+||+||+.|||||-.+..... .|+.......+. . .
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvGD~~QLpsV~~G~vl~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLGDKNQLPSVEAGAVLGDLCELASIGYLFQSAQAYALCKKINSKTRN 338 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCCCEEEEECChhhCCCCCCChhHHHHHHhhccccchhhhhhhcccccccccccC
Confidence 789999999999997753 3443445689999999999999965432111 011110000000 0 0
Q ss_pred CCc--cEEeccccCCch--hHhhhhhhh
Q psy3251 726 GIR--PFRLEVQYRMHP--ELSKFPSNF 749 (959)
Q Consensus 726 g~~--~~~L~~qYRmhp--~I~~f~s~~ 749 (959)
.++ .++|+++||... .|..++...
T Consensus 339 ~i~~~~~~L~~~~R~~~~S~I~~lA~~I 366 (586)
T TIGR01447 339 PLSDNVCFLKTSHRFGKDSGIGQLAKAI 366 (586)
T ss_pred CCCCcEEEeceeecCCCCccHHHHHHHH
Confidence 123 689999999965 588887655
No 18
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=99.94 E-value=8.9e-26 Score=279.14 Aligned_cols=305 Identities=20% Similarity=0.230 Sum_probs=170.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhcCC---eEE
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRTGL---KVV 576 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~gl---~vv 576 (959)
..||++|++||... .+..+|.|+||||||+|++.+|.+|+.. .+.+||++||||.|+.+|.+|+.+... .-+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~~~~~ 80 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPVAEDI 80 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccccCCc
Confidence 46999999999754 6778999999999999999999999975 457899999999999999999976411 111
Q ss_pred Eeeccc-------cc-----------ccCCchhHHH-HHHHHHhhhh-------hHHHHHHHHHHHHhccCChHH-----
Q psy3251 577 RVCAKS-------RE-----------AIDSPVSFLA-LHNQIRNMEM-------NSELKKLLQLKEETGELSSAD----- 625 (959)
Q Consensus 577 Rl~~~s-------re-----------~i~~~~~~l~-l~~~i~~~~~-------~~~l~kl~~lk~~~~~ls~~~----- 625 (959)
.++.-. ++ .+-...+... +...+..... ..-...+..++... ++..+
T Consensus 81 ~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~ 158 (726)
T TIGR01073 81 WISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQLSLMKTILKDKNLDPKKFEPRSILGTISNAKNEL--LPPEDFAKEA 158 (726)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHcC--CCHHHHHHhh
Confidence 111100 00 0000000000 0111111000 00000111111110 00000
Q ss_pred ----H----HHHHHHHHH-HHHHhhccCceeeeeccccC-Cccc---ccCCcCEEEEECCCCCChhhh-Hhhh-hhcCCe
Q psy3251 626 ----E----KRYRMLKKN-AEKSLLDNADVICCTCVGAG-DPRL---LKIKFHSILIDESMQATEPEC-MVPV-ILGAKQ 690 (959)
Q Consensus 626 ----~----k~~~~l~~~-~e~~lL~~a~VI~~T~~~a~-~~~l---~~~~fd~VIIDEAsQ~~Epe~-Lipl-~~~~kr 690 (959)
. .-|...... .+...++..+++..+..... ++.+ ...+|++|+|||+++.+..+. ++.+ ....++
T Consensus 159 ~~~~~~~~~~iy~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~v~~~~~~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~ 238 (726)
T TIGR01073 159 TNYFEKVVAEVYQEYQKRLLRNNALDFDDLIMTTINLFQRVPDVLEYYQRKFQYIHVDEYQDTNRAQYTLVRLLASRFRN 238 (726)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCEEEEEccccCCHHHHHHHHHHhCCCCE
Confidence 0 011111111 11133444444443332221 2222 123899999999999998873 3333 334578
Q ss_pred EEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccC
Q psy3251 691 LILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSK 768 (959)
Q Consensus 691 vVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~ 768 (959)
+++|||++|- .....|-....|.++... +...+.|.+|||+++.|.++++.++-.+.-... ..
T Consensus 239 l~vVGD~~Qs-------IY~fRgA~~~~~~~f~~~~~~~~~i~L~~NyRS~~~Il~~an~li~~~~~r~~--------~~ 303 (726)
T TIGR01073 239 LCVVGDADQS-------IYGWRGADIQNILSFEKDYPNATTILLEQNYRSTKNILQAANEVIEHNSNRKP--------KN 303 (726)
T ss_pred EEEEeCCCcc-------ccccCCCChHHHHHHHHhCCCCeEEECccCCCCCHHHHHHHHHHHHhcccccc--------cc
Confidence 9999999992 222334445555544432 345689999999999999999998765421100 00
Q ss_pred CCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcC-CCCCcEEEEccChHHHHHHHH
Q psy3251 769 IDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCG-MKPEQIGVITPYEGQRAFLVQ 839 (959)
Q Consensus 769 ~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g-~~~~~IgIITPY~~Q~~~L~~ 839 (959)
+....+. +.++.++... ....||..|.+.+.+++..| +++++|+||++.+.|...+..
T Consensus 304 l~~~~~~-g~~v~~~~~~------------~~~~Ea~~ia~~I~~l~~~~~~~~~diAVL~R~~~~~~~l~~ 362 (726)
T TIGR01073 304 LWTENSS-GDKITYYEAD------------TERDEAQFVAGEIDKLVKNGERKYGDFAILYRTNAQSRVFEE 362 (726)
T ss_pred cccCCCC-CcceEEEeCC------------CHHHHHHHHHHHHHHHHHcCCCCcCCEEEEEeCchhHHHHHH
Confidence 0000111 1222332211 12468899999999998877 689999999887665444433
No 19
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.94 E-value=1.2e-25 Score=274.41 Aligned_cols=239 Identities=19% Similarity=0.255 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc-CCe---EE
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT-GLK---VV 576 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~-gl~---vv 576 (959)
.||++|++||... .+..+|.|+||||||+|++.+|.+|+.. ++.+||++||||.||++|.+|+.+. +.. -+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~~~~v 79 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKEARGL 79 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcccccCc
Confidence 5999999999764 6778899999999999999999999964 4578999999999999999999764 211 01
Q ss_pred Eeeccc-------cc-----------ccCCchhHHH-HHHHHHhh--hhhHHHHHHH----HHHHHhccCChHH------
Q psy3251 577 RVCAKS-------RE-----------AIDSPVSFLA-LHNQIRNM--EMNSELKKLL----QLKEETGELSSAD------ 625 (959)
Q Consensus 577 Rl~~~s-------re-----------~i~~~~~~l~-l~~~i~~~--~~~~~l~kl~----~lk~~~~~ls~~~------ 625 (959)
.++.-. +. .+-....... +...+... .....+..+. ..+.. .++...
T Consensus 80 ~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~k~~--~~~~~~~~~~~~ 157 (672)
T PRK10919 80 MISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKND--LKTPAQAAAGAK 157 (672)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHc--CCCHHHHHHHhc
Confidence 111100 00 0000000000 00000000 0000011110 11110 000000
Q ss_pred ---H----HHHHHHHHH-HHHHhhccCceeeeecccc-CCccc---ccCCcCEEEEECCCCCChhhh-Hhhhh-hcCCeE
Q psy3251 626 ---E----KRYRMLKKN-AEKSLLDNADVICCTCVGA-GDPRL---LKIKFHSILIDESMQATEPEC-MVPVI-LGAKQL 691 (959)
Q Consensus 626 ---~----k~~~~l~~~-~e~~lL~~a~VI~~T~~~a-~~~~l---~~~~fd~VIIDEAsQ~~Epe~-Lipl~-~~~krv 691 (959)
. .-|...... .+...++..+++..+.... .++.+ ...+|++|+|||+++++..+. |+..+ ....++
T Consensus 158 ~~~~~~~~~~~~~Ye~~l~~~~~lDf~Dll~~~~~ll~~~~~~~~~~~~~~~~ilVDE~QDtn~~Q~~ll~~l~~~~~~l 237 (672)
T PRK10919 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (672)
T ss_pred chhHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCHHHHHHHHhcCCEEEEEchhcCCHHHHHHHHHHHcCCCEE
Confidence 0 011111111 1122344444443332221 12222 124799999999999998773 33333 235789
Q ss_pred EEEccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccC
Q psy3251 692 ILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEG 753 (959)
Q Consensus 692 VLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g 753 (959)
++|||++| ......|-....|.++... +...+.|.+|||++++|.+++|.++-.+
T Consensus 238 ~~VGD~~Q-------sIY~frGA~~~~~~~f~~~~~~~~~~~L~~NyRs~~~I~~~an~li~~n 294 (672)
T PRK10919 238 TVVGDDDQ-------SIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANN 294 (672)
T ss_pred EEEcCCcc-------cccccCCCChHHHHHHHHhCCCCcEEECCCCCCCcHHHHHHHHHHHhhC
Confidence 99999999 2223445566676665442 3456899999999999999999988543
No 20
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.93 E-value=2.1e-25 Score=273.10 Aligned_cols=300 Identities=23% Similarity=0.267 Sum_probs=188.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
..||+.|++|+..++.+++++|+|+||||||+++..++..+...+ ..+|++||||+.|++.|.+.+. .+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g---~~------- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG---LT------- 391 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC---Cc-------
Confidence 469999999999999999999999999999999988887665542 2689999999999998877532 11
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
-.++|..+.... +... ....-..
T Consensus 392 ----------a~Tih~lL~~~~---------------~~~~--------------------------------~~~~~~~ 414 (720)
T TIGR01448 392 ----------ASTIHRLLGYGP---------------DTFR--------------------------------HNHLEDP 414 (720)
T ss_pred ----------cccHHHHhhccC---------------Cccc--------------------------------hhhhhcc
Confidence 112232221000 0000 0000012
Q ss_pred CCcCEEEEECCCCCChhhh--HhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC-CccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG-IRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g-~~~~~L~~qYRm 738 (959)
...++||||||+|+..+.. |+.......++|||||+.|||||-.+ ..|..++..+ .+.+.|+.+||.
T Consensus 415 ~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLpsV~~G----------~v~~dl~~~~~~~~~~L~~i~RQ 484 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLPSVGPG----------QVLKDLILSQAIPVTRLTKVYRQ 484 (720)
T ss_pred ccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEECccccccCCCCC----------chHHHHHhcCCCCEEEeCeeecc
Confidence 3689999999999987652 33333356799999999999998543 2455555554 678899999998
Q ss_pred c--hhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHH-
Q psy3251 739 H--PELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI- 815 (959)
Q Consensus 739 h--p~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll- 815 (959)
. ..|..++...- .|.+.. .. ++.. .. .+ .+..+ .....+..++..++
T Consensus 485 ~~~s~i~~~a~~i~-~g~~~~---~~-------~~~~---------~~---~~------~~~~~-~~~~~i~~~v~~~~~ 534 (720)
T TIGR01448 485 AAGSPIITLAHGIL-HGEAPA---WG-------DFKF---------LN---LT------RSEPE-GAARHIPLMVEKIVG 534 (720)
T ss_pred CCCcHHHHHHHHHH-cCCCch---hh-------hhhc---------cc---cc------cccch-hhHHHHHHHHHHHHH
Confidence 6 45888776542 333210 00 0000 00 00 00111 11122333344333
Q ss_pred ---HcCCCCCcEEEEccChHH---HHHHHHHHHhcCC--------C-------------------------C--------
Q psy3251 816 ---RCGMKPEQIGVITPYEGQ---RAFLVQHMQYQGS--------L-------------------------P-------- 848 (959)
Q Consensus 816 ---~~g~~~~~IgIITPY~~Q---~~~L~~~L~~~~~--------~-------------------------~-------- 848 (959)
..+++..++-||||.+.- +..|.+.++..-. + +
T Consensus 535 ~~~~~~~~~~d~qVL~p~~~g~~Gv~~lN~~lq~~lnp~~~~~~~~~~~~~~~~~GDkVm~~~N~~~~~v~NGdiG~I~~ 614 (720)
T TIGR01448 535 MARVGGIPGADIQVLAPMYKGPLGIDALNQHLQALLNPYQKGQGGIEIAEGEYRKGDRVMQTKNDYNNEIFNGDLGMIVK 614 (720)
T ss_pred HHHhcCCChhHeeEeCccccCccCHHHHHHHHHHHhCccCCCCceeecCCceecCCCEEEEeeecchhccccCCeeEEEe
Confidence 235667789999986422 2333333321100 0 0
Q ss_pred --ccc---CCce----------------------EEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhc
Q psy3251 849 --AKI---YQEI----------------------EVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAK 901 (959)
Q Consensus 849 --~~~---~~~V----------------------~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK 901 (959)
... ...+ ...|||++||+|+|.||+....+.. -+.+++.+|||+||||
T Consensus 615 i~~~~~~~~~~i~v~f~g~~v~~~~~~~~~l~lAYAiTvHKsQGSe~~~Vii~l~~~~~-----~~l~r~llYTAiTRAk 689 (720)
T TIGR01448 615 IEGAKQGKKDQVVVDFDGNEVELTRAELFNLTLAYATSIHKSQGSEFPTVILPIHTAHM-----RMLYRNLLYTALTRAK 689 (720)
T ss_pred ccccccCCCceEEEEECCeEEEEcHHHhhhhhhhheeeehhccCccCCEEEEECCcccc-----hhhhhchheeeeeeec
Confidence 000 0001 1579999999999999998766543 3778999999999999
Q ss_pred ccEEEEEcccccc
Q psy3251 902 YGIIVIGNPKVLS 914 (959)
Q Consensus 902 ~~LiIvGn~~~L~ 914 (959)
+.|+|||+.+.+.
T Consensus 690 ~~l~lvg~~~a~~ 702 (720)
T TIGR01448 690 KRVILVGSAEAFD 702 (720)
T ss_pred eEEEEEECHHHHH
Confidence 9999999998763
No 21
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.92 E-value=4.5e-24 Score=262.06 Aligned_cols=240 Identities=18% Similarity=0.200 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc-CCe---EE
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT-GLK---VV 576 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~-gl~---vv 576 (959)
.||+.|++||... .+..+|.|+||||||+|++.+|.+|+.. ++.+||++||||.|+.+|.+||.+. +.. -+
T Consensus 1 ~Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~~~~v 78 (664)
T TIGR01074 1 KLNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARGL 78 (664)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccccCCe
Confidence 4899999999754 6778999999999999999999999964 4578999999999999999999753 211 11
Q ss_pred Eeecccc-------c-----ccCC------chhHHHH-HHHHHhhh--hhHHHHHHHHHHHHhc--cCChHH--------
Q psy3251 577 RVCAKSR-------E-----AIDS------PVSFLAL-HNQIRNME--MNSELKKLLQLKEETG--ELSSAD-------- 625 (959)
Q Consensus 577 Rl~~~sr-------e-----~i~~------~~~~l~l-~~~i~~~~--~~~~l~kl~~lk~~~~--~ls~~~-------- 625 (959)
.++.-.+ + .+.. ......+ ...+.... ....+.++..+..... .++..+
T Consensus 79 ~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 158 (664)
T TIGR01074 79 TISTFHTLGLDIIKREYNALGYKSNFSLFDETDQLALLKELTEGLIKDDKDLLDKLISTISNWKNDLLTPEQALASARGE 158 (664)
T ss_pred EEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCCHHHHHHhccCh
Confidence 1111000 0 0000 0000000 00000000 0000111111111100 011000
Q ss_pred -----HHHHHHHHHHHH-HHhhccCceeeeeccccC-Ccccc---cCCcCEEEEECCCCCChhhh--HhhhhhcCCeEEE
Q psy3251 626 -----EKRYRMLKKNAE-KSLLDNADVICCTCVGAG-DPRLL---KIKFHSILIDESMQATEPEC--MVPVILGAKQLIL 693 (959)
Q Consensus 626 -----~k~~~~l~~~~e-~~lL~~a~VI~~T~~~a~-~~~l~---~~~fd~VIIDEAsQ~~Epe~--Lipl~~~~krvVL 693 (959)
..-|........ ...++..+++........ ++.+. ..+|++|+|||+++++..+. +-.+.....++++
T Consensus 159 ~~~~~~~i~~~Y~~~l~~~~~ldf~Dll~~~~~~L~~~~~i~~~~~~~~~~ilVDEfQD~~~~Q~~ll~~L~~~~~~l~~ 238 (664)
T TIGR01074 159 REQTFAHCYALYQAHLRAYNALDFDDLILLPTLLLQQNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKLLVGDRARFTV 238 (664)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhChHHHHHHHHhCCEEEEeehccCCHHHHHHHHHHhcCCCeEEE
Confidence 001111111111 113333343333222221 22222 24799999999999998773 3333333568999
Q ss_pred EccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhcc
Q psy3251 694 VGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYE 752 (959)
Q Consensus 694 VGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~ 752 (959)
|||++|-. ....|-+...|.++... +...+.|.+|||++++|.++++.+|-.
T Consensus 239 vGD~~QsI-------Y~frga~~~~~~~~~~~~~~~~~~~L~~NyRs~~~Il~~~n~l~~~ 292 (664)
T TIGR01074 239 VGDDDQSI-------YSWRGARPENLVLLKEDFPQLKVIKLEQNYRSTGRILKAANILIAN 292 (664)
T ss_pred EcCCcccc-------cCCCCCCHHHHHHHHHhCCCCeEEECCCCCCChHHHHHHHHHHHhc
Confidence 99999921 12233444455444432 345688999999999999999996644
No 22
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.88 E-value=1.1e-21 Score=241.10 Aligned_cols=296 Identities=18% Similarity=0.184 Sum_probs=182.5
Q ss_pred CCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 503 PDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
..||+.|+.||..++. +++++|+||||||||+++..++..+.. .+.+|++||||+.|+..|.+.. |+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~ApTg~Aa~~L~~~~---g~~a~----- 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGAALSGKAAEGLQAES---GIESR----- 421 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHHhcc---CCcee-----
Confidence 3699999999999887 589999999999999999887755544 4789999999999999997642 21110
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
+++..+..+ . .+.. ..
T Consensus 422 ------------Ti~~~~~~~---------------------------------------~-----------~~~~--~~ 437 (744)
T TIGR02768 422 ------------TLASLEYAW---------------------------------------A-----------NGRD--LL 437 (744)
T ss_pred ------------eHHHHHhhh---------------------------------------c-----------cCcc--cC
Confidence 111110000 0 0000 11
Q ss_pred CCcCEEEEECCCCCChhh--hHhhhh-hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPE--CMVPVI-LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe--~Lipl~-~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
...++||||||+|+.... .|+... ....++|||||+.|||||-.+. .|..+.. ..+.+.|+..||.
T Consensus 438 ~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG~----------~f~~l~~-~~~~~~Lt~I~RQ 506 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGA----------AFRAIAE-RIGYAELETIRRQ 506 (744)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECChHHccccccCc----------HHHHHHH-hhCeEEeeeEEec
Confidence 368999999999998765 233322 2457899999999999996543 4444443 3567899999998
Q ss_pred chhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHc-
Q psy3251 739 HPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRC- 817 (959)
Q Consensus 739 hp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~- 817 (959)
...-..-++..+-.|........ +.. ...+.+ . .+..+ .+..++......
T Consensus 507 ~~~~~~~aa~~i~~G~~~~~l~~----~~~--------~~~i~~--~-------------~~~~~--~~~~i~~~~~~~~ 557 (744)
T TIGR02768 507 REAWARQASLELARGDVEKALAA----YRD--------HGHITI--H-------------DTREE--AIEQVVADWKQDL 557 (744)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHH----Hhh--------CCCEee--c-------------CCHHH--HHHHHHHHHHHhh
Confidence 65433334444545443211000 000 000000 0 01111 122222222211
Q ss_pred -CCCCCcE-EEEccChHHHHHHHHHHH----hcCCCCcc-----------------------------------------
Q psy3251 818 -GMKPEQI-GVITPYEGQRAFLVQHMQ----YQGSLPAK----------------------------------------- 850 (959)
Q Consensus 818 -g~~~~~I-gIITPY~~Q~~~L~~~L~----~~~~~~~~----------------------------------------- 850 (959)
...+.+. .||+|.+..+..|...++ ..+.+...
T Consensus 558 ~~~~~~~~~lIla~tn~~v~~LN~~ir~~L~~~g~l~~~~~~~~~~g~~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~ 637 (744)
T TIGR02768 558 REANPAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGERKFAAGDRIVFLENNRDLGVKNGMLGTVEEIE 637 (744)
T ss_pred hhcCcccceEEEcCchHhHHHHHHHHHHHHHhcCccCcCceeeccCCCceecCCCEEEEEecccccCCcCCCEEEEEEec
Confidence 1233445 588888888777655443 11110000
Q ss_pred ----------------------cCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEE
Q psy3251 851 ----------------------IYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIG 908 (959)
Q Consensus 851 ----------------------~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvG 908 (959)
...--...|||++||+|+|.||+.. ..+.+++.+|||+||||+.++|+|
T Consensus 638 ~~~i~v~~~~G~~v~~~~~~~~~l~laYA~TvHKsQGst~~~viv~~---------~~~l~r~llYvAiTRar~~~~l~~ 708 (744)
T TIGR02768 638 DGRLVVQLDSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVLA---------SKSMDRHLAYVAMTRHRESVQLYA 708 (744)
T ss_pred CCeEEEEECCCCEEEECHHHhCccCceEEeccccccCCccCcEEEec---------CCccccchhhhhhhcccceeEEEE
Confidence 0000127799999999999999862 124678999999999999999999
Q ss_pred ccccccCCchHH
Q psy3251 909 NPKVLSKQPLWN 920 (959)
Q Consensus 909 n~~~L~~~~~W~ 920 (959)
+...+....-|.
T Consensus 709 ~~~~~~~~~~l~ 720 (744)
T TIGR02768 709 GKEDFTDRGALV 720 (744)
T ss_pred chhhccChHHHH
Confidence 998886544333
No 23
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.85 E-value=4.3e-20 Score=229.92 Aligned_cols=308 Identities=19% Similarity=0.221 Sum_probs=192.4
Q ss_pred CCCCHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 503 PDLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
..||++|++||..+. .+++.+|+|+||||||+++..++.. +...+.+|+.+|||+.|+..|.+.. |++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~-~e~~G~~V~g~ApTgkAA~~L~e~~---Gi~a------ 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA-WEAAGYRVVGGALAGKAAEGLEKEA---GIQS------ 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH-HHHcCCeEEEEcCcHHHHHHHHHhh---CCCe------
Confidence 369999999999875 4789999999999999999887744 4445789999999999999986642 2211
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
.+++..+.. ... +...+
T Consensus 450 -----------~TIas~ll~---------------------------------------~~~-----------~~~~l-- 466 (1102)
T PRK13826 450 -----------RTLSSWELR---------------------------------------WNQ-----------GRDQL-- 466 (1102)
T ss_pred -----------eeHHHHHhh---------------------------------------hcc-----------CccCC--
Confidence 011111000 000 00011
Q ss_pred CCcCEEEEECCCCCChhhh--Hhhhh-hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVI-LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~-~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
..-++||||||+|+....+ |+-.. ....++|||||+.||+||-.+. .|..+.. ......|+..||.
T Consensus 467 ~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~----------~f~~l~~-~i~~a~LteI~RQ 535 (1102)
T PRK13826 467 DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGA----------AFRAIAD-RIGYAELETIYRQ 535 (1102)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCHHHcCCCCCCc----------HHHHHHh-hcCEEEeeeeeec
Confidence 1357999999999987763 33333 2457999999999999996532 4555543 4667899999998
Q ss_pred chhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcC
Q psy3251 739 HPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCG 818 (959)
Q Consensus 739 hp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g 818 (959)
..+-..-++..+-.|........ +. ....+.+ .....+.+..++.......
T Consensus 536 ~~~~~r~Aa~~i~~G~~~~aL~~----~~--------~~g~v~~-----------------~~~~~e~~~~lv~~~~~~~ 586 (1102)
T PRK13826 536 REQWMRDASLDLARGNVGKALDA----YR--------ANGRVIG-----------------SRLKAEAVESLIADWNRDY 586 (1102)
T ss_pred CChHHHHHHHHHHcCCchhhhhH----hh--------cCCeEec-----------------cccHHHHHHHHHHHHhhcc
Confidence 76633344555555544211100 00 0000000 0001123444444444322
Q ss_pred CCCCcEEEEccChHHHHHHHHHHH----hcCCCC----------------------------------------------
Q psy3251 819 MKPEQIGVITPYEGQRAFLVQHMQ----YQGSLP---------------------------------------------- 848 (959)
Q Consensus 819 ~~~~~IgIITPY~~Q~~~L~~~L~----~~~~~~---------------------------------------------- 848 (959)
-+..++-||+|.+.-+..|...++ ..|.+.
T Consensus 587 ~~~~~~lILa~tn~~v~~LN~~iR~~L~~~G~L~~~~~~~~~~G~r~f~vGDrV~f~rNd~~lgV~NGd~GtV~~i~~~~ 666 (1102)
T PRK13826 587 DPTKTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGERRFAAGDQIVFLKNEGSLGVKNGMIGKVVEAAPNR 666 (1102)
T ss_pred CcccceEEECCchHHHHHHHHHHHHHhhhccCCCcCceeeeccCCccccCCCEEEEeeecCccCccCCCeEEEEEecCCe
Confidence 233467788888777776655443 111000
Q ss_pred ------c-----------c---cCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEE
Q psy3251 849 ------A-----------K---IYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIG 908 (959)
Q Consensus 849 ------~-----------~---~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvG 908 (959)
. . ...--...|||++||.++|.|++... -..+++.+||||||||+.+.|+.
T Consensus 667 i~v~~d~g~~~r~V~~~~~~~~~ldhaYA~TVHKSQGsT~d~V~vl~s---------~~ldR~llYVA~TRaR~~~~ly~ 737 (1102)
T PRK13826 667 IVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLAS---------LSLDRHLTYVAMTRHREDLQLYY 737 (1102)
T ss_pred EEEEEcCCCCceEEEechhhccchhheeeeeeecccccccceEEEecc---------cccccchhHHhhccccceEEEEE
Confidence 0 0 00011266999999999999998631 24678899999999999999999
Q ss_pred ccc----------cccC------------CchHHHHHHHHHHcCce
Q psy3251 909 NPK----------VLSK------------QPLWNNLLNFYKEQKVL 932 (959)
Q Consensus 909 n~~----------~L~~------------~~~W~~ll~~~~~~~~~ 932 (959)
+.. .|++ ...++.-++|.+.+|..
T Consensus 738 ~~~~~~~~~~L~~~lsr~~~K~ttld~~~~~~~~~~~~~a~~rg~~ 783 (1102)
T PRK13826 738 GRRSFAFNGGLIPVLSRRNAKETTLDYERGKLYRQALRFAENRGLH 783 (1102)
T ss_pred chhhhhhhHHHHHHHhcccccchhhhhhhhhhhhHHHHHHHHcCCh
Confidence 986 3332 24456667888888763
No 24
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1e-19 Score=232.62 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCcCEEEEECCCCCChhhh--HhhhhhcCC--eEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVILGAK--QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYR 737 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~~~~k--rvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYR 737 (959)
.+|++|+|||+++++..+. +-.+..+.. .+++|||++| ......|-+...|.++...-...+.|.+|||
T Consensus 295 ~ry~~vLVDEFQDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQ-------SIY~FRGAD~~~~~~~~~~~~~~~~L~~NyR 367 (1087)
T TIGR00609 295 EQYPIALIDEFQDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQ-------AIYSFRGADIFTYLQAKSKADARYTLGTNWR 367 (1087)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHHhCCCCCeEEEEECCcc-------ccccCCCCCHHHHHHHHHhcCcEEECCCCCC
Confidence 4899999999999987773 333332333 7999999999 2223445555566555443336689999999
Q ss_pred CchhHhhhhhhhhccCCccc--cc---cc-ccccccCCCCCCC-CCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHH
Q psy3251 738 MHPELSKFPSNFFYEGSLQN--GV---CA-DERKLSKIDFPWP-VPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKI 810 (959)
Q Consensus 738 mhp~I~~f~s~~fY~g~L~~--~~---~~-~~r~~~~~~~~~p-~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~i 810 (959)
++|.|.+++|.+|-...-.. +. .. ..+.........+ ....++.++....... +..-.-..+|+.+...
T Consensus 368 S~~~Iv~~~N~lf~~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~a~~~a~~ 443 (1087)
T TIGR00609 368 STPALVGSLNKLFSLISNPFLEKPIFIPVLAHQKNSKGSFVINGQEQPPIHFFTTEVESE----GVDDYRQTIAQKCARE 443 (1087)
T ss_pred CcHHHHHHHHHHHhccccccccCCCCCcccchhhcCCCccccCCCCCCCeEEeecCCccc----ccchHHHHHHHHHHHH
Confidence 99999999999985421110 00 00 0000000000001 1123455544322111 0001123455666666
Q ss_pred HHHHHHc---------------CCCCCcEEEEccChHHHHHHHHHHHhcC
Q psy3251 811 TTRFIRC---------------GMKPEQIGVITPYEGQRAFLVQHMQYQG 845 (959)
Q Consensus 811 v~~Ll~~---------------g~~~~~IgIITPY~~Q~~~L~~~L~~~~ 845 (959)
+.+++.. +++++||+||++.+.|...|.+.|...|
T Consensus 444 I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAVLvRs~~~a~~i~~aL~~~G 493 (1087)
T TIGR00609 444 IALWLASAALGLANFIATFGGRPLRAGDIAVLVRGRKEANQIRKALKKAQ 493 (1087)
T ss_pred HHHHHHhccccccccccccCcCCCCcccEEEEEeCCchHHHHHHHHHHCC
Confidence 6666532 4678999999999999888887655433
No 25
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.85 E-value=6.9e-20 Score=227.41 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=190.6
Q ss_pred CCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 503 PDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
..||++|++||..++. +++++|+|+|||||||++..++ .+++..+.+|++||||+.|+..|.+.. |+.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~-~~~e~~G~~V~~~ApTGkAA~~L~e~t---Gi~------- 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR-EAWEAAGYEVRGAALSGIAAENLEGGS---GIA------- 413 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-HHHHHcCCeEEEecCcHHHHHHHhhcc---Ccc-------
Confidence 3699999999999987 5799999999999999976654 455555789999999999999986531 111
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
..+++..+..+ -. +. ..-
T Consensus 414 ----------a~TI~sll~~~--------------------------------------~~------------~~--~~l 431 (988)
T PRK13889 414 ----------SRTIASLEHGW--------------------------------------GQ------------GR--DLL 431 (988)
T ss_pred ----------hhhHHHHHhhh--------------------------------------cc------------cc--ccc
Confidence 01222111000 00 00 011
Q ss_pred CCcCEEEEECCCCCChhhh--Hhhhh-hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVI-LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~-~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
...++||||||+|+....+ |+... ....++|||||+.|||||-.+ ..|..+.. ..+.+.|+..+|.
T Consensus 432 ~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVGD~~QLpsV~aG----------~~f~~L~~-~~~~a~LteI~RQ 500 (988)
T PRK13889 432 TSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAG----------AAFRSIHE-RHGGAEIGEVRRQ 500 (988)
T ss_pred ccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEECCHHHcCCCCCC----------chHHHHHH-hcCeEEeceeecC
Confidence 2578999999999987653 32222 345799999999999999432 34544443 3557899999999
Q ss_pred chhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHH-c
Q psy3251 739 HPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIR-C 817 (959)
Q Consensus 739 hp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~-~ 817 (959)
......-.+..+..|....... .+. ... .+... -+..+ .+..++..... .
T Consensus 501 ~~~~~r~aa~~i~~G~~~~al~----~~~--------~~g--~v~~~-------------~~~e~--~~~~lv~~~~~~r 551 (988)
T PRK13889 501 REDWQRDATRDLATGRTGEALD----AYE--------AHG--MVHAA-------------ATREQ--ARADLIDRWDRDR 551 (988)
T ss_pred CCHHHHHHHHHHHcCCchhhhh----hhh--------ccC--eEecc-------------CCHHH--HHHHHHHHHHHhh
Confidence 7655444555566655421110 000 000 00000 01112 22233333222 1
Q ss_pred CC-CCCcEEEEccChHHHHHHHHHHHh----cCCCCc-----------cc-----------------C------------
Q psy3251 818 GM-KPEQIGVITPYEGQRAFLVQHMQY----QGSLPA-----------KI-----------------Y------------ 852 (959)
Q Consensus 818 g~-~~~~IgIITPY~~Q~~~L~~~L~~----~~~~~~-----------~~-----------------~------------ 852 (959)
.. +..++.||||.+..+..|...++. .+.+.. .+ .
T Consensus 552 ~~~~~~~~lVLaptn~~v~~LN~~iR~~L~~~G~lg~~~~~~~~~g~r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~ 631 (988)
T PRK13889 552 QAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLGDDVRVTVERGERSFASGDRVMFLQNERGLGVKNGTLGTIEQVSA 631 (988)
T ss_pred ccCCcccEEEEcCCcccHHHHHHHHHHHhhccCCccccceeccccCCccccCCCEEEEeecCCcCCEeCCCeEEEEEecC
Confidence 22 336789999999888777665432 211100 00 0
Q ss_pred ----------Cce-------------EEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEc
Q psy3251 853 ----------QEI-------------EVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGN 909 (959)
Q Consensus 853 ----------~~V-------------~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn 909 (959)
..| ...|||++||.|+|.|++.... ..+.+.+||||||||+.+.|+.+
T Consensus 632 ~~i~V~~d~gr~V~~~~~~~~~ldlaYA~TIHKSQGsT~d~V~vl~~~---------~~~r~l~YVAiTRar~~v~l~~~ 702 (988)
T PRK13889 632 QSMSVRLDDGRSVAFDLKDYDRIDHGYAATIHKAQGMTVDRTHVLATP---------GMDAHSSYVALSRHRDGVDLHYG 702 (988)
T ss_pred CeEEEEECCCeEEEecHHHcCcccchhhhhhHHhcCCCCCeEEEeccc---------ccccchhHHhhhhhhheEEEEec
Confidence 001 1559999999999998876411 24577899999999999999974
Q ss_pred ccc----------ccCC---------chHHHHHHHHHHcCceeeccCc
Q psy3251 910 PKV----------LSKQ---------PLWNNLLNFYKEQKVLVEGPLN 938 (959)
Q Consensus 910 ~~~----------L~~~---------~~W~~ll~~~~~~~~~v~g~~~ 938 (959)
.+- |+++ ..-..+..|.+.+|.-++..+.
T Consensus 703 ~~~~~~~~~L~~~lsr~~~K~tald~~~~~~~~~~a~~~g~~~~~~~~ 750 (988)
T PRK13889 703 RDDFADRDRLVRTLSRDRAKDMASDYERADPAQSYAERRGITFRERVA 750 (988)
T ss_pred CcccccHHHHHHHHcccchhhhhhhccccchHHHHHHhcCCCcccchh
Confidence 422 2221 1122467888888886654443
No 26
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.85 E-value=9.1e-20 Score=235.58 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCcCEEEEECCCCCChhh-hHhhhhhc----CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc-------CCcc
Q psy3251 662 IKFHSILIDESMQATEPE-CMVPVILG----AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-------GIRP 729 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe-~Lipl~~~----~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~-------g~~~ 729 (959)
.+|++|+|||+++++..+ .++.++.+ ..++++|||++| ......|-..++|.++... ....
T Consensus 387 ~rf~~ILVDEfQDTn~lQ~~Il~~L~~~~~~~~nLf~VGD~KQ-------SIY~FRGAdp~lf~~~~~~f~~~~~~~~~~ 459 (1232)
T TIGR02785 387 EKFKEVLVDEYQDTNLLQESILQLLKRGEEDEGNLFMVGDVKQ-------SIYRFRQADPSLFLEKYHRFAQEGNEHGKR 459 (1232)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHhccCCCCCeEEEEcCCcc-------hhhhhcCCChHHHHHHHHHhhhhccCCceE
Confidence 489999999999999877 34555443 268999999999 3445566677887655432 1346
Q ss_pred EEeccccCCchhHhhhhhhhhcc
Q psy3251 730 FRLEVQYRMHPELSKFPSNFFYE 752 (959)
Q Consensus 730 ~~L~~qYRmhp~I~~f~s~~fY~ 752 (959)
+.|.+|||++++|.+++|.+|..
T Consensus 460 i~L~~NfRS~~~Il~~~N~lF~~ 482 (1232)
T TIGR02785 460 IDLAENFRSRKEVLDTTNYLFKQ 482 (1232)
T ss_pred EECCcCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999964
No 27
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.5e-19 Score=221.94 Aligned_cols=308 Identities=19% Similarity=0.193 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhcCCe-E---E
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRTGLK-V---V 576 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~gl~-v---v 576 (959)
.||+.|++||... .+..+|.++||||||+|++.+|.+|+.. .+.+||++++||+||.+|.+|+.+.... . +
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~~~~~ 79 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPAAEGL 79 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCcccccCc
Confidence 5999999999876 7888999999999999999999999987 3467999999999999999999875321 0 1
Q ss_pred Eeecc------------------cccccCCchhHHHHHHHHHh----hhhh----HHHH-HHHHHHHHhcc---CC----
Q psy3251 577 RVCAK------------------SREAIDSPVSFLALHNQIRN----MEMN----SELK-KLLQLKEETGE---LS---- 622 (959)
Q Consensus 577 Rl~~~------------------sre~i~~~~~~l~l~~~i~~----~~~~----~~l~-kl~~lk~~~~~---ls---- 622 (959)
.++.- ....+-...+...+...+.. .+.. ..+. .+...+...-. ..
T Consensus 80 ~v~TfHs~~~~~lr~~~~~~~~~~~~~i~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 159 (655)
T COG0210 80 TVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALIKELLRRELNLDDKELLPREALRYISEAKNALLSPLEASALLL 159 (655)
T ss_pred EEeeHHHHHHHHHHHHHHhcCCCCCCEEecHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHhhCCChhhhhhhhh
Confidence 11100 00000000011111111110 0000 0000 01111110000 00
Q ss_pred ----hHHHH----HHHHHHHHH-HHHhhccCceeeeeccccC-Cccc---ccCCcCEEEEECCCCCChhhh-Hhhhhh-c
Q psy3251 623 ----SADEK----RYRMLKKNA-EKSLLDNADVICCTCVGAG-DPRL---LKIKFHSILIDESMQATEPEC-MVPVIL-G 687 (959)
Q Consensus 623 ----~~~~k----~~~~l~~~~-e~~lL~~a~VI~~T~~~a~-~~~l---~~~~fd~VIIDEAsQ~~Epe~-Lipl~~-~ 687 (959)
....+ .|....+.. ....++..+.+.-++.-.. .+.+ ...+|++|+|||+++....+. |+-+.. .
T Consensus 160 ~~~~~~~~~~~~~~y~~Y~~~~~~~~~~df~dll~~~~~l~~~~~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~la~~ 239 (655)
T COG0210 160 AAIKSEAEKKLAELYEEYQELLRLNNALDFDDLLLLALRLLEENPEVLEALQARFRYILVDEFQDTNPLQYELLKLLAGN 239 (655)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCHHHHHHHHhhCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 00011 111111110 1113333334433333222 2221 135899999999988887663 333333 3
Q ss_pred CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC--CccEEeccccCCchhHhhhhhhhhccCCccccccccccc
Q psy3251 688 AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG--IRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERK 765 (959)
Q Consensus 688 ~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g--~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~ 765 (959)
...+.+|||+.|- .....|-....+.++...- .+.+.|..|||+.+.|...+|..+-.+.-..
T Consensus 240 ~~~l~~VGD~dQs-------IY~frGA~~~ni~~f~~df~~~~~i~Le~NyRSt~~Il~~An~~i~~n~~r~-------- 304 (655)
T COG0210 240 AANLFVVGDDDQS-------IYGFRGADPENILDFEKDFPAAKVIKLEQNYRSTPNILAAANKVIANNKKRQ-------- 304 (655)
T ss_pred CCCEEEEcCCccc-------cceeCCCChHHHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHHHhcCCccC--------
Confidence 4688899999992 2234566666666655443 4678999999999999999999876322111
Q ss_pred ccCCCCC-CCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcC-CCCCcEEEEccChHHHHHHHHHH
Q psy3251 766 LSKIDFP-WPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCG-MKPEQIGVITPYEGQRAFLVQHM 841 (959)
Q Consensus 766 ~~~~~~~-~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g-~~~~~IgIITPY~~Q~~~L~~~L 841 (959)
.+.+... ......+.++ . ......||..+...+..+...| ...++|+|+...+.|...+.+.+
T Consensus 305 ~k~l~~~~~~~~~~~~~~-~------------~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~n~~s~~~e~~l 369 (655)
T COG0210 305 AKTLRTEVEGSGEKVVLL-L------------ANDEEDEARWIASEIDALIEIGKVNYSDIAILYRTNAQSRLIEEAL 369 (655)
T ss_pred CCcceeccCCCCCCceEE-e------------CCChHHHHHHHHHHHHHHHHcCCCChhhEEEEEecCcchHHHHHHH
Confidence 0011000 0111122221 1 2335779999999999999888 88999999988888877776643
No 28
>PRK13909 putative recombination protein RecB; Provisional
Probab=99.82 E-value=1.2e-18 Score=219.87 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=105.8
Q ss_pred cCCcCEEEEECCCCCChhh--hHhhhhh----c-----CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc-CCc
Q psy3251 661 KIKFHSILIDESMQATEPE--CMVPVIL----G-----AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-GIR 728 (959)
Q Consensus 661 ~~~fd~VIIDEAsQ~~Epe--~Lipl~~----~-----~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~-g~~ 728 (959)
..+|++|+|||+|+++..+ .+.++.. + ...+++|||++| ......|-...+|.++... +..
T Consensus 326 ~~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQ-------SIY~FRGA~~~~f~~~~~~~~~~ 398 (910)
T PRK13909 326 DSKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQ-------SIYRFRGGKKELFDKVSKDFKQK 398 (910)
T ss_pred hcCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchh-------hhhhhcCCChHHHHHHHHHhhhh
Confidence 3489999999999999877 3445431 1 357999999999 3344556667788877543 225
Q ss_pred cEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHH
Q psy3251 729 PFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVE 808 (959)
Q Consensus 729 ~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~ 808 (959)
.+.|.+|||++|.|.+|+|.+|-... .... . . .. .....+..+.++.. . .....+++.++
T Consensus 399 ~~~L~~NyRS~~~Iv~~~N~~f~~~~-~~~~-~-~-----~~-~~~~~~g~v~i~~~-~----------~~~~~~a~~ia 458 (910)
T PRK13909 399 VDNLDTNYRSAPLIVDFVNEVFKKKY-KNYK-T-Q-----YA-EQHKSGGYVEVVEV-A----------DESEELLEQLL 458 (910)
T ss_pred hcccccCCCCChHHHHHHHHHHHHHH-Hhhh-h-h-----hc-ccccCCCcEEEEEC-C----------CccHHHHHHHH
Confidence 68899999999999999999885411 0000 0 0 00 00001111222211 0 01234678889
Q ss_pred HHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhc
Q psy3251 809 KITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQ 844 (959)
Q Consensus 809 ~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~ 844 (959)
+.+..++..|++++||+||++.+.|...+.+.|...
T Consensus 459 ~~I~~l~~~g~~~~dIaILvR~~~~~~~l~~~L~~~ 494 (910)
T PRK13909 459 QEIQFLLEKGIDPDDIAILCWTNDDALEIKEFLQEQ 494 (910)
T ss_pred HHHHHHHHcCCCcCCEEEEEecCccHHHHHHHHHhc
Confidence 999999999999999999999999988888877766
No 29
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.5e-19 Score=227.19 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=110.6
Q ss_pred CCcCEEEEECCCCCChhh--hHhhhhhc----CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHH--cCCccEEec
Q psy3251 662 IKFHSILIDESMQATEPE--CMVPVILG----AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV--LGIRPFRLE 733 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe--~Lipl~~~----~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~--~g~~~~~L~ 733 (959)
.+|++|+|||+++.+..+ .+-.+..+ ...++||||++| ......|-+..+|..... .....+.|.
T Consensus 377 ~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQ-------SIY~FRgAD~~~f~~a~~~~~~~~~~~L~ 449 (1139)
T COG1074 377 EQYPHILIDEFQDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQ-------SIYRFRGADIFTFLEAASSEKAFARITLE 449 (1139)
T ss_pred hcCCeEEeeccccCCHHHHHHHHHHHhcCCCCCCceEEecCchH-------HhhhhcCCChHHHHHHhhccccCceeecc
Confidence 489999999998887665 33344433 248999999999 555667778888888877 566789999
Q ss_pred cccCCchhHhhhhhhhhccC------Cccccccccc--c-cccCCCCCCCCCCCCe-EEEEcCC--cceeccCCCcccCH
Q psy3251 734 VQYRMHPELSKFPSNFFYEG------SLQNGVCADE--R-KLSKIDFPWPVPDKPM-LFYVTQG--QEEIAGSGTSYVNR 801 (959)
Q Consensus 734 ~qYRmhp~I~~f~s~~fY~g------~L~~~~~~~~--r-~~~~~~~~~p~~~~p~-~f~~~~g--~ee~~~~g~S~~N~ 801 (959)
+|||+.+++++++|.+|-.- .....+.... + .......+|+ .|. .++.... ..............
T Consensus 450 ~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~ 526 (1139)
T COG1074 450 TNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARNGSPGSVNGEP---LPALKFWEEEDDWTAPENEEDEREIAD 526 (1139)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhcCCCCCCchhhhhhcccCCCCCCCccc---chhhhhhcCcccccCCCCchhHHHHHH
Confidence 99999999999999998631 1111111000 0 0001111111 111 1111110 00000000123456
Q ss_pred HHHHHHHHHHHHHHH--------cCCCCCcEEEEccChHHHHHHHHHHHhc
Q psy3251 802 TEASNVEKITTRFIR--------CGMKPEQIGVITPYEGQRAFLVQHMQYQ 844 (959)
Q Consensus 802 ~EA~~V~~iv~~Ll~--------~g~~~~~IgIITPY~~Q~~~L~~~L~~~ 844 (959)
.+|..+...+..+.. ..+.++||+||++-+.+...|.+.|+..
T Consensus 527 ~~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~~i~~aL~~~ 577 (1139)
T COG1074 527 LEARQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAAAIERALKKA 577 (1139)
T ss_pred HHHHHHHHHHHHHhhCCccccCCCCCChhheEEEeecchhHHHHHHHHHhc
Confidence 677777777777774 3588899999999999999998887765
No 30
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=99.79 E-value=8.5e-18 Score=215.60 Aligned_cols=170 Identities=15% Similarity=0.228 Sum_probs=98.6
Q ss_pred CCcCEEEEECCCCCChhhh--Hhhhhh--cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVIL--GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYR 737 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~~--~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYR 737 (959)
.+|++|+|||+++++..+. +..+.. ....+++|||++|-.- ...|-+...|-.........+.|.+|||
T Consensus 376 ~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQsIY-------~FRGAd~~~~l~~~~~~~~~~~L~~NyR 448 (1181)
T PRK10876 376 TRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQAIY-------AFRGADIFTYMKARSEVSAHYTLDTNWR 448 (1181)
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCccccc-------cCCCCCchHHHHHHhccCCeeECCCCcC
Confidence 4899999999999987763 333332 1357999999999221 2223333223222222234689999999
Q ss_pred CchhHhhhhhhhhccCCcc---cccc---cc-cccccCCCCCCC-CCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHH
Q psy3251 738 MHPELSKFPSNFFYEGSLQ---NGVC---AD-ERKLSKIDFPWP-VPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEK 809 (959)
Q Consensus 738 mhp~I~~f~s~~fY~g~L~---~~~~---~~-~r~~~~~~~~~p-~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~ 809 (959)
+++.|.+++|.+|-...-. .+.. .. ........+... ....|+.++...+... ........||+.+..
T Consensus 449 S~~~Iv~~~N~lf~~~~~~~~~~~i~~~~v~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~eA~~iA~ 524 (1181)
T PRK10876 449 SAPGMVNSVNKLFSQTDDPFLFREIPFIPVKAAGKNQALRFVVKGETQPAMKFWLMEGEGV----GVGDYQQTMAQQCAA 524 (1181)
T ss_pred cCHHHHHHHHHHHhcccccccCCCCCccccccccccccccccccCCCCCceeeeecCCCcc----CcchHHHHHHHHHHH
Confidence 9999999999998653210 0000 00 000000000000 0112333443332111 111233567888888
Q ss_pred HHHHHHHcC---------------CCCCcEEEEccChHHHHHHHHHHH
Q psy3251 810 ITTRFIRCG---------------MKPEQIGVITPYEGQRAFLVQHMQ 842 (959)
Q Consensus 810 iv~~Ll~~g---------------~~~~~IgIITPY~~Q~~~L~~~L~ 842 (959)
.|.+++..| ++++||+||++.+.|...+++.|.
T Consensus 525 ~I~~ll~~g~~~~~~~~~~~~~r~~~~~DIAVLvRs~~~a~~i~~aL~ 572 (1181)
T PRK10876 525 QIRDWLQAGQRGEALLMNGDDSRPVRASDITVLVRSRQEAALIRDALT 572 (1181)
T ss_pred HHHHHHhcccccceeeccCCCcCCCCcccEEEEEecCchHHHHHHHHH
Confidence 888877543 578899999999999888877654
No 31
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.78 E-value=7e-19 Score=183.79 Aligned_cols=174 Identities=28% Similarity=0.327 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 504 DLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
.||++|++|+..++.+ ++.+|+||||||||+++..++..+... +.+|+++||||.|+++|.+++. .+...+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~~Aa~~L~~~~~---~~a~Ti--- 73 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTNKAAKELREKTG---IEAQTI--- 73 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSHHHHHHHHHHHT---S-EEEH---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcHHHHHHHHHhhC---cchhhH---
Confidence 4899999999999864 599999999999999998877666665 6899999999999999988742 221111
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
+..+.... ..........
T Consensus 74 --------------~~~l~~~~------------------------------------------------~~~~~~~~~~ 91 (196)
T PF13604_consen 74 --------------HSFLYRIP------------------------------------------------NGDDEGRPEL 91 (196)
T ss_dssp --------------HHHTTEEC------------------------------------------------CEECCSSCC-
T ss_pred --------------HHHHhcCC------------------------------------------------cccccccccC
Confidence 11110000 0000000002
Q ss_pred CCcCEEEEECCCCCChhhh--Hhhhhhc-CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVILG-AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~~~-~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
...++||||||+|+..... |+.+... ..++|++||++||+|+..+ +.|..+...+...+.|+..+|.
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~g----------~~~~~l~~~~~~~~~L~~i~Rq 161 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGAG----------SPFADLQESGGITVELTEIRRQ 161 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCSTT----------CHHHHHCGCSTTEEEE---SCC
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcCC----------cHHHHHHhcCCCeEEeChhhcC
Confidence 3678999999999997763 2222222 4689999999999999542 4566666666658999999999
Q ss_pred chhHhhhhhhhhccCCcc
Q psy3251 739 HPELSKFPSNFFYEGSLQ 756 (959)
Q Consensus 739 hp~I~~f~s~~fY~g~L~ 756 (959)
...-..-++..+.+|...
T Consensus 162 ~~~~~~~~~~~~~~g~~~ 179 (196)
T PF13604_consen 162 KDPELREAAKAIREGDAE 179 (196)
T ss_dssp CCTHHHHHHHHHCTT---
T ss_pred CChHHHHHHHHHHcCCCc
Confidence 744333445556665543
No 32
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.72 E-value=3.5e-16 Score=202.66 Aligned_cols=173 Identities=18% Similarity=0.241 Sum_probs=119.0
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHH---ccCCCEEEEcccHHHHHHHHHHHHhcCCeEEE
Q psy3251 503 PDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVK---QTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~---~~~~rILV~ApSN~AvD~L~erL~~~gl~vvR 577 (959)
..||+.|+.||..++.. ++++|+|+||||||+++..++..+.. ..+.+|+.+|||+.|+..|.+ .|++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~Gi~--- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----AGVD--- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----cCcc---
Confidence 46999999999999974 69999999999999999888766532 235679999999999998865 2322
Q ss_pred eecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCc
Q psy3251 578 VCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDP 657 (959)
Q Consensus 578 l~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~ 657 (959)
-.++|..+.... . ....+.
T Consensus 1039 --------------A~TI~s~L~~~~------------------------------------------~----~~~~~~- 1057 (1747)
T PRK13709 1039 --------------AQTLASFLHDTQ------------------------------------------L----QQRSGE- 1057 (1747)
T ss_pred --------------hhhHHHHhcccc------------------------------------------c----cccccc-
Confidence 122332221100 0 000000
Q ss_pred ccccCCcCEEEEECCCCCChhhh--Hhhhhh-cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHH-cCCccEEec
Q psy3251 658 RLLKIKFHSILIDESMQATEPEC--MVPVIL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV-LGIRPFRLE 733 (959)
Q Consensus 658 ~l~~~~fd~VIIDEAsQ~~Epe~--Lipl~~-~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~-~g~~~~~L~ 733 (959)
......++||||||+|+....+ |+-++. ...++|||||+.|||||-.+ ..|..++. .+++...|+
T Consensus 1058 -~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~aG----------~~f~~l~~~~~i~~~~L~ 1126 (1747)
T PRK13709 1058 -TPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPG----------QPFRLMQTRSAADVAIMK 1126 (1747)
T ss_pred -CCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHhcCCCCCC----------hHHHHHHHhCCCCeEEeC
Confidence 1113568999999999987653 333333 35799999999999999443 56777776 468889999
Q ss_pred cccCCchhHhhhhhhhhccCCc
Q psy3251 734 VQYRMHPELSKFPSNFFYEGSL 755 (959)
Q Consensus 734 ~qYRmhp~I~~f~s~~fY~g~L 755 (959)
..+|..+.+... ...+..|..
T Consensus 1127 eI~RQ~~~lr~A-v~~~~~g~~ 1147 (1747)
T PRK13709 1127 EIVRQTPELREA-VYSLINRDV 1147 (1747)
T ss_pred eEEcCcHHHHHH-HHHHHccCH
Confidence 999999854444 444555543
No 33
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.71 E-value=4.2e-16 Score=199.32 Aligned_cols=169 Identities=19% Similarity=0.262 Sum_probs=119.5
Q ss_pred CCCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHH---HccCCCEEEEcccHHHHHHHHHHHHhcCCeEEE
Q psy3251 503 PDLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLV---KQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll---~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvR 577 (959)
..||+.|++||..++. +++++|+|+||||||+++..++..+. +..+.+|+.+|||+.|+..|.+. |++
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~----Gi~--- 906 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA----GVD--- 906 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh----Cch---
Confidence 3699999999999995 48999999999999999877765432 33467899999999999999642 221
Q ss_pred eecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCc
Q psy3251 578 VCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDP 657 (959)
Q Consensus 578 l~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~ 657 (959)
-.+++..+.... . + . ..+..
T Consensus 907 --------------A~TIasfL~~~~-----------------~-------~------------~----------~~~~~ 926 (1623)
T PRK14712 907 --------------AQTLASFLHDTQ-----------------L-------Q------------Q----------RSGET 926 (1623)
T ss_pred --------------HhhHHHHhcccc-----------------c-------h------------h----------hcccC
Confidence 122332221100 0 0 0 00000
Q ss_pred ccccCCcCEEEEECCCCCChhhh--Hhhhhh-cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc-CCccEEec
Q psy3251 658 RLLKIKFHSILIDESMQATEPEC--MVPVIL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-GIRPFRLE 733 (959)
Q Consensus 658 ~l~~~~fd~VIIDEAsQ~~Epe~--Lipl~~-~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~-g~~~~~L~ 733 (959)
.....++||||||+|+....+ |+-++. ...++|||||++||+||-.+ +.|+.++.. +.+...|+
T Consensus 927 --~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~aG----------~~F~~lq~~~~~~ta~L~ 994 (1623)
T PRK14712 927 --PDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPG----------QPFRLQQTRSAADVVIMK 994 (1623)
T ss_pred --CCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCCCC----------HHHHHHHHcCCCCeEEeC
Confidence 112568999999999987653 333333 34799999999999999543 578888875 67899999
Q ss_pred cccCCchhHhhhhhhhh
Q psy3251 734 VQYRMHPELSKFPSNFF 750 (959)
Q Consensus 734 ~qYRmhp~I~~f~s~~f 750 (959)
..+|..+++...+....
T Consensus 995 eI~RQ~~elr~AV~~~~ 1011 (1623)
T PRK14712 995 EIVRQTPELREAVYSLI 1011 (1623)
T ss_pred eeecCCHHHHHHHHHHH
Confidence 99999998777765543
No 34
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.68 E-value=9.4e-16 Score=174.95 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=138.3
Q ss_pred CCcCEEEEECCCCCChhhhHhhhh--hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc----CCccEEeccc
Q psy3251 662 IKFHSILIDESMQATEPECMVPVI--LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL----GIRPFRLEVQ 735 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~Lipl~--~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~----g~~~~~L~~q 735 (959)
..+.++|||||++.+..+ +..+. ..+...-.+||-.|- +.. .++ ..+..+|.... ...-+.|..+
T Consensus 527 ~~~kh~vIDeaqdys~~q-~~~~r~l~~~as~tivgd~gq~---i~~----~~~-e~~~~e~~~~~fed~~~e~v~l~~s 597 (747)
T COG3973 527 RRLKHTVIDEAQDYSRFQ-FTDNRTLAERASMTIVGDYGQV---IYD----EAQ-ELSPMERMDVFFEDPSFEYVGLIAS 597 (747)
T ss_pred ccccceeechhhhcchhh-hHHHhhhhhhccceEeccCCce---ehh----hhc-ccCHHHHHHHHHhCCCchhhhhhhh
Confidence 468999999998887554 32222 356788999999991 111 111 12334443322 2445789999
Q ss_pred cCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHH
Q psy3251 736 YRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI 815 (959)
Q Consensus 736 YRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll 815 (959)
||++.+|.+|++.+.-++ . +. .++ ..++..|... .+..|..=.+.+..++.+|.
T Consensus 598 yrSt~eI~efan~~l~d~-----~----~~-~p~---~rsge~p~~i-------------~~~~ne~l~qr~~~ii~~mk 651 (747)
T COG3973 598 YRSTAEIDEFANSLLPDR-----F----RI-HPL---TRSGEKPAVI-------------MSVANEELVQRNPDIIPRMK 651 (747)
T ss_pred hcChHHHHHHHHHhccCC-----C----cc-chh---hcCCCCceee-------------eccchHHHHHhhHHHHHHHH
Confidence 999999999999875421 0 00 000 0122334322 12335555666777888888
Q ss_pred HcCCCCCcEEEEccChHHHHHHHHHHHhcCCC------CcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCC
Q psy3251 816 RCGMKPEQIGVITPYEGQRAFLVQHMQYQGSL------PAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLND 889 (959)
Q Consensus 816 ~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~------~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d 889 (959)
+.| .+.|||||+...|+..+...|+..... +.....+..|.-|+-.+|.|||.||+...- +. .. --.+
T Consensus 652 k~~--~etiaVi~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s-~~-e~--te~~ 725 (747)
T COG3973 652 KRG--SETIAVICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS-IV-EE--TEQD 725 (747)
T ss_pred hcC--CCceEEECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-hh-cc--cccc
Confidence 776 468999999999999999988754432 233446788999999999999999986542 11 11 1357
Q ss_pred cCceeecchhhcccEEEEEc
Q psy3251 890 PRRLNVALTRAKYGIIVIGN 909 (959)
Q Consensus 890 ~rRLNVAlTRAK~~LiIvGn 909 (959)
.|.||||+|||-+.|+|+|-
T Consensus 726 ~r~LYva~TRAlh~l~if~~ 745 (747)
T COG3973 726 LRDLYVAVTRALHSLYIFGE 745 (747)
T ss_pred hhhHHHHHHHHHHHHHHhhc
Confidence 89999999999999999874
No 35
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=99.64 E-value=2.6e-16 Score=168.19 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=39.5
Q ss_pred EEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEE
Q psy3251 856 EVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVI 907 (959)
Q Consensus 856 ~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIv 907 (959)
.+.|++++||.|+|.|++........ .-+..+++++||||||||+.|+|+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~~--~~~~~~~~~~~VALTR~~~~l~i~ 233 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTDN--ELYSESRNHLYVALTRHTKSLVIL 233 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCccc--ccccCCcccEEEEccccccEEEEE
Confidence 58999999999999998866544321 112236999999999999999986
No 36
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.63 E-value=6.4e-15 Score=196.08 Aligned_cols=170 Identities=20% Similarity=0.240 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHH---HHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEE
Q psy3251 503 PDLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVY---QLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~---~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvR 577 (959)
..||+.|+.|+..++. ..+++|+|+||||||+++.+++. .++...+.+|+.+|||+.|+.+|.+ .|++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~----~g~~a-- 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS----AGVQA-- 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh----cCCch--
Confidence 4699999999999885 47999999999999999965443 3444457789999999999999964 22221
Q ss_pred eecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCc
Q psy3251 578 VCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDP 657 (959)
Q Consensus 578 l~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~ 657 (959)
.+++..+.+. .. .....
T Consensus 1092 ---------------~Ti~s~l~~~------------------------------------------~~------~~~~~ 1108 (1960)
T TIGR02760 1092 ---------------QTLDSFLTDI------------------------------------------SL------YRNSG 1108 (1960)
T ss_pred ---------------HhHHHHhcCc------------------------------------------cc------ccccC
Confidence 1222211100 00 00000
Q ss_pred ccccCCcCEEEEECCCCCChhhh--Hhhhh-hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC-CccEEec
Q psy3251 658 RLLKIKFHSILIDESMQATEPEC--MVPVI-LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG-IRPFRLE 733 (959)
Q Consensus 658 ~l~~~~fd~VIIDEAsQ~~Epe~--Lipl~-~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g-~~~~~L~ 733 (959)
.....+++|||||+|+...++ |+-+. ....++|||||+.||+||-.+ ..|+-++..+ ++.+.|+
T Consensus 1109 --~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~aG----------~~f~~~~~~~~~~~~~L~ 1176 (1960)
T TIGR02760 1109 --GDFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAG----------KPFELAITFDIIDTAIMK 1176 (1960)
T ss_pred --CCCcccEEEEEccccccHHHHHHHHHhccCCCCEEEEeCChhhcCCCCCC----------cCHHHHHhcCCCCeEEee
Confidence 023568999999999987663 33332 345799999999999998432 3455555544 7889999
Q ss_pred cccCCc--hhHhhhhhhhhccCC
Q psy3251 734 VQYRMH--PELSKFPSNFFYEGS 754 (959)
Q Consensus 734 ~qYRmh--p~I~~f~s~~fY~g~ 754 (959)
..+|.. |.+... ...+-.|.
T Consensus 1177 ~I~RQ~~~~~l~~a-~~~~~~~~ 1198 (1960)
T TIGR02760 1177 EIVRQNNSAELKAA-HNSLDKRS 1198 (1960)
T ss_pred eEecCCCCHHHHHH-HHHHhcCc
Confidence 999994 555444 44444444
No 37
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.58 E-value=3.6e-14 Score=183.88 Aligned_cols=168 Identities=16% Similarity=0.176 Sum_probs=98.8
Q ss_pred CCcCEEEEECCCCCChhh--hHhhhhhc-----------CCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc---
Q psy3251 662 IKFHSILIDESMQATEPE--CMVPVILG-----------AKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--- 725 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe--~Lipl~~~-----------~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--- 725 (959)
.+|++|+|||+|+++..+ .+.++... .+.+++|||++| ......|-+..+|.++...
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQ-------SIY~FRGAd~~~f~~~~~~~~~ 462 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQ-------SIYSFQGADPDRFAEERREFNR 462 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCcc-------cCccccCCCHHHHHHHHHHHHH
Confidence 489999999999999877 34445431 367999999999 2334456667777665331
Q ss_pred -------CCccEEeccccCCchhHhhhhhhhhccCCcccccccc--cccccCCCCCCCCCCCCeEEEEcCCcceecc---
Q psy3251 726 -------GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCAD--ERKLSKIDFPWPVPDKPMLFYVTQGQEEIAG--- 793 (959)
Q Consensus 726 -------g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~--~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~--- 793 (959)
....+.|++|||+++.|.+++|.+|-......+.... ........ +....++.++.....+....
T Consensus 463 ~~~~~~~~~~~~~L~~NyRS~~~Il~~~N~lf~~~~~~~~~~~~~~~~~~~~~~---~~~~g~v~l~~~~~~~~~~~~~~ 539 (1141)
T TIGR02784 463 KVRAVGAKFEDLSLNYSFRSTPDVLAAVDLVFADPENYRGLSADSDLVVHEAIR---SDLPGEVELWDLISPEEGEDPED 539 (1141)
T ss_pred hhhhccCCceEeeCCcCCCChHHHHHHHHHHHhCchhccccCCcchhhcccccc---cCCCCceEEEeccCccccccccc
Confidence 1245789999999999999999999653221111000 00000000 00011222222111000000
Q ss_pred ----C---CCcccCHHHHHHHHHHHHHHHHcC----------CCCCcEEEEccChHH-HHHHHH
Q psy3251 794 ----S---GTSYVNRTEASNVEKITTRFIRCG----------MKPEQIGVITPYEGQ-RAFLVQ 839 (959)
Q Consensus 794 ----~---g~S~~N~~EA~~V~~iv~~Ll~~g----------~~~~~IgIITPY~~Q-~~~L~~ 839 (959)
. ........||+.|.+.|..++..| ++++||+||++.+.+ ...|.+
T Consensus 540 ~~~~~~~~~~~~~~~~eA~~Ia~~I~~ll~~g~~~~~~~~r~~~~~DIAILvRs~~~~~~~i~~ 603 (1141)
T TIGR02784 540 WTAPVDELGERAPEVRLAERIAATIRDWLDRGTPIPKGRGRAARPGDILVLVRKRDAFVSALIR 603 (1141)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhCCCccccCCcCCCCCCcEEEEEeCCchhHHHHHH
Confidence 0 000111258899999999998776 578899999998876 345544
No 38
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=99.53 E-value=2.7e-14 Score=158.71 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc---CCCEEEEcccHHHHHHHHHHHHh
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT---GSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~---~~rILV~ApSN~AvD~L~erL~~ 570 (959)
||++|.++|.. ..+..+|.|+||||||+|+++++..|+... +.+||++||||.|+++|.+||..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 78999999987 688999999999999999999999988763 57899999999999999999976
No 39
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=99.51 E-value=1.2e-13 Score=157.24 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=105.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQ 598 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~ 598 (959)
.+.+|+|+||||||.++..++..+.. ..+.++++++++..-++.+.+.+.+...+ ...+. .+.....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-----~~~~~------~~~~~~~- 69 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-----KLKKS------DFRKPTS- 69 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-----chhhh------hhhhhHH-
Confidence 46899999999999999999998822 24678899999998888888877643200 00000 0000000
Q ss_pred HHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEEECCCCCCh-
Q psy3251 599 IRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATE- 677 (959)
Q Consensus 599 i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ~~E- 677 (959)
.+.... ........||+||||||+.+.+
T Consensus 70 -----------------------------------------~i~~~~----------~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 70 -----------------------------------------FINNYS----------ESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -----------------------------------------HHhhcc----------cccccCCcCCEEEEehhHhhhhc
Confidence 000000 0112234899999999998877
Q ss_pred ---------hhhHhhhhhcCCeEEEEccCCC-CCceeechhHHhhcCcHHHHHHHHH-cCCc--c-EEeccccCC--chh
Q psy3251 678 ---------PECMVPVILGAKQLILVGDHCQ-LGPVVMCKKAARAGLSQSLFERLVV-LGIR--P-FRLEVQYRM--HPE 741 (959)
Q Consensus 678 ---------pe~Lipl~~~~krvVLVGD~~Q-L~Pvv~s~~a~~~gl~~SLFeRL~~-~g~~--~-~~L~~qYRm--hp~ 741 (959)
+..|.-+...++.+|++-|+.| +.|--. .....++.+.. .+.. . +.|+.|||| .++
T Consensus 99 ~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~--------~~~~~l~~~~~~~~~~~~~~~~L~~q~R~~~~~~ 170 (352)
T PF09848_consen 99 GDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSEI--------GTLENLEEIAENLGIEVRHFFELKTQFRCHGSKE 170 (352)
T ss_pred cccccccccHHHHHHHHhcCCEEEEEEccccEeecccC--------CCHHHHHHHHHhcCCccccCcCcCcceecCCCHH
Confidence 3456666666788898999999 333211 12233444333 3333 2 489999999 899
Q ss_pred HhhhhhhhhccCCc
Q psy3251 742 LSKFPSNFFYEGSL 755 (959)
Q Consensus 742 I~~f~s~~fY~g~L 755 (959)
+.+|+.++++....
T Consensus 171 ~~~wI~~ll~~~~~ 184 (352)
T PF09848_consen 171 YIDWIDNLLDNKNI 184 (352)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999876543
No 40
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=99.43 E-value=8.9e-14 Score=172.04 Aligned_cols=134 Identities=23% Similarity=0.241 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeeccc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKS 582 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~s 582 (959)
..++++|..|+..++.++.+++.||||||||+++..++..+.. ....+++.|++..|+-.+.+.-..
T Consensus 318 ~~~~~~q~~a~~vl~~de~smlt~~~~~~~~~~~~~~~~l~~~-~~~~~l~aa~tG~a~~~l~e~tg~------------ 384 (696)
T COG0507 318 LRLSLEQKEALDVLVVDEVSMLTGGPGTGKTTAIKAIARLIKE-GDGDQLLAAPTGKAAKRLNESTGL------------ 384 (696)
T ss_pred CCcCcccHHHHHHHhcCCeeEEeccCCcchHHHHHHHHHHHHh-cCCcEEeechhhHHHHHHHHhhCc------------
Confidence 4688999999999999999999999999999999988855544 456699999999999988775210
Q ss_pred ccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccC
Q psy3251 583 REAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662 (959)
Q Consensus 583 re~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~ 662 (959)
.-.++|..... ..... ......
T Consensus 385 --------~a~ti~~~~~~---------------------------------------~~~~~-----------~~~~~~ 406 (696)
T COG0507 385 --------EARTIHRLLGL---------------------------------------WEKTG-----------NNEEPL 406 (696)
T ss_pred --------chhHHHHHHhc---------------------------------------cccCC-----------CCCCcc
Confidence 01111211100 00000 111223
Q ss_pred CcCEEEEECCCCCChhhhHhhh---hhcCCeEEEEccCCCCCceeechh
Q psy3251 663 KFHSILIDESMQATEPECMVPV---ILGAKQLILVGDHCQLGPVVMCKK 708 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe~Lipl---~~~~krvVLVGD~~QL~Pvv~s~~ 708 (959)
..|.+||||++++.. ....-+ .....++|++||+.||+++..+..
T Consensus 407 ~~d~~iiDe~~ml~~-~~~~~l~~~i~~~a~~i~vGD~~ql~~v~~g~~ 454 (696)
T COG0507 407 DGDLLIIDEASMLDT-SLAFGLLSAIGKLAKVILVGDVDQLPSVGAGAV 454 (696)
T ss_pred ccceeEEehhhhHHH-HHhhhhhcccccCCeEEEeCCHHhcCCCCCCch
Confidence 679999999999987 422222 234689999999999999977653
No 41
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=145.48 Aligned_cols=363 Identities=17% Similarity=0.134 Sum_probs=196.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhc----------
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT---------- 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~---------- 571 (959)
..++..|++|+-..- .+.-.|+|=+|+|||.++++.+++|... +..+|+++.+|...+..+..++.+.
T Consensus 161 anfD~~Q~kaa~~~~-~G~qrIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pd 239 (660)
T COG3972 161 ANFDTDQTKAAFQSG-FGKQRIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPD 239 (660)
T ss_pred hcccchhheeeeecC-CchhhhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 357788887753321 3455899999999999999999988755 7789999999999999988877542
Q ss_pred -CCeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccCceeee
Q psy3251 572 -GLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEE-TGELSSADEKRYRMLKKNAEKSLLDNADVICC 649 (959)
Q Consensus 572 -gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~-~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~ 649 (959)
+-+.++.+......-. +.+. ......++.. .+.... .+..+. ++++..++
T Consensus 240 W~~~l~~h~wgG~t~~g----~y~~------------~~~~~~~~~~~fsg~g~----~F~~aC----~eli~~~~---- 291 (660)
T COG3972 240 WGTKLFCHNWGGLTKEG----FYGM------------YRYICHYYEIPFSGFGN----GFDAAC----KELIADIN---- 291 (660)
T ss_pred ccceEEEeccCCCCCCc----chHH------------HHHHhcccccccCCCCc----chHHHH----HHHHHhhh----
Confidence 2223443322111100 0000 0000000000 000000 011111 11222111
Q ss_pred eccccCCcccccCCcCEEEEECCCCCChhhhHhhhh----hcCCeEEEEccCCC-CCceeechhHHhhcCcHHHHHH--H
Q psy3251 650 TCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVI----LGAKQLILVGDHCQ-LGPVVMCKKAARAGLSQSLFER--L 722 (959)
Q Consensus 650 T~~~a~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~----~~~krvVLVGD~~Q-L~Pvv~s~~a~~~gl~~SLFeR--L 722 (959)
.+.-+|+|+|||+++.+ +.++-++ ...+++|.++|.-| |.-+-+-..+.-.|-...---| |
T Consensus 292 ----------~~~~yD~ilIDE~QDFP--~~F~~Lcf~~tkd~KrlvyAyDelQnls~~~m~ppe~iFg~d~dg~P~V~l 359 (660)
T COG3972 292 ----------NKKAYDYILIDESQDFP--QSFIDLCFMVTKDKKRLVYAYDELQNLSNVKMRPPEEIFGPDSDGEPRVNL 359 (660)
T ss_pred ----------ccccccEEEecccccCC--HHHHHHHHHHhcCcceEEEehHhhhcccccCCCCHHHhcCcCCCCCccccc
Confidence 13368999999998775 4333333 35699999999999 2222221111111111000000 0
Q ss_pred HHcCCccEEeccccCCchhHhhhhhhh---hccCCccc--cc--------ccccccc---cCCCCCCCCCCCCeEEEEcC
Q psy3251 723 VVLGIRPFRLEVQYRMHPELSKFPSNF---FYEGSLQN--GV--------CADERKL---SKIDFPWPVPDKPMLFYVTQ 786 (959)
Q Consensus 723 ~~~g~~~~~L~~qYRmhp~I~~f~s~~---fY~g~L~~--~~--------~~~~r~~---~~~~~~~p~~~~p~~f~~~~ 786 (959)
....-+.+.|...||..|...-++-.+ .|.|.++- ++ ......+ ..+....+....|.++-...
T Consensus 360 ~radr~DiVL~kCYRnsp~nLvaAHaLGfG~ysnlVqlfd~p~lW~diGY~vk~g~l~vG~~V~L~Rdpessp~fl~e~~ 439 (660)
T COG3972 360 ARADRNDIVLKKCYRNSPKNLVAAHALGFGLYSNLVQLFDKPPLWDDIGYKVKKGDLQVGDRVHLSRDPESSPEFLPENH 439 (660)
T ss_pred ccCccccchHHHHhcCCchhhhHHhhccchhhhHHHHHhcCchhhhhcCceeecccccCCCceeeccCcccCcccccccC
Confidence 011123478999999988866554433 23332210 00 0000000 00001111122333222221
Q ss_pred CcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChH----HHHHHHHHHHhcCCC------------Ccc
Q psy3251 787 GQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEG----QRAFLVQHMQYQGSL------------PAK 850 (959)
Q Consensus 787 g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~----Q~~~L~~~L~~~~~~------------~~~ 850 (959)
..+....--.+---..|+.+++.-+..+.+.++.++||.||.+..+ -...+.+-|..++.- ...
T Consensus 440 ~p~~i~~fi~fd~~~deivwi~~qI~~~~edeLe~dDIiVi~lDp~t~Rgy~~~li~sL~s~giq~hl~gvd~s~e~~f~ 519 (660)
T COG3972 440 KPTAIHLFIGFDNGPDEIVWIIIQIKEFREDELEQDDIIVIFLDPGTMRGYIYELIHSLKSKGIQQHLWGVDISHETKFK 519 (660)
T ss_pred ChhhhheeeccCCcchhhHHHHHHHHHhcccccccCCEEEEecCCccccchHHHHHHHHHHhhhhhhccccCcccccccc
Confidence 1111110001111356888888877777778899999999987543 344444444433311 011
Q ss_pred cCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEc
Q psy3251 851 IYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGN 909 (959)
Q Consensus 851 ~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn 909 (959)
....|.+.+|-..+|.|+.+|+...+..-. .|....++-+++||||.|.-+-|+|-
T Consensus 520 ~dgkvtis~IyrAKGnEapfV~aL~a~~ls---~~la~~RN~LfTamTRSkawvrv~gl 575 (660)
T COG3972 520 QDGKVTISRIYRAKGNEAPFVYALGAAYLS---TGLADWRNILFTAMTRSKAWVRVVGL 575 (660)
T ss_pred cCceEEeeeehhccCCCCcEEEEehhhhhC---ccchhHHhHHHHHHhhhhhhhhhhcc
Confidence 224799999999999999999998776643 45566777999999999999888883
No 42
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.35 E-value=2.3e-11 Score=162.56 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 504 DLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
.||+.|++||..++.+ ++.+|+|+||||||+++..++.. ++..+.+|.++|||+.|+..|.+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~G~~V~~lAPTgrAA~~L~e~~g~~---------- 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHL-ASEQGYEIQIITAGSLSAQELRQKIPRL---------- 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHHhcch----------
Confidence 6999999999999874 79999999999999999988854 4555789999999999999998864311
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
-.+++.++..+........+. ..+. ....+
T Consensus 498 ----------A~Ti~~~l~~l~~~~~~~tv~--------------------------~fl~------------~~~~l-- 527 (1960)
T TIGR02760 498 ----------ASTFITWVKNLFNDDQDHTVQ--------------------------GLLD------------KSSPF-- 527 (1960)
T ss_pred ----------hhhHHHHHHhhcccccchhHH--------------------------Hhhc------------ccCCC--
Confidence 012222222110000000000 0000 00011
Q ss_pred CCcCEEEEECCCCCChhhh--Hhhhh-hcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 662 IKFHSILIDESMQATEPEC--MVPVI-LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~--Lipl~-~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
..-++||||||+|+...++ |+-.. ....+||||||+.||++|-.+ +.|.-|...|++.++|...-|.
T Consensus 528 ~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~aG----------~~f~~L~~~gv~t~~l~~i~rq 597 (1960)
T TIGR02760 528 SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGMSAG----------SAIDLLKEGGVTTYAWVDTKQQ 597 (1960)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcChhhcCccccc----------hHHHHHHHCCCcEEEeeccccc
Confidence 2568999999999998774 33323 245799999999999998543 3566666778888888876555
Q ss_pred chhH
Q psy3251 739 HPEL 742 (959)
Q Consensus 739 hp~I 742 (959)
...+
T Consensus 598 ~~~v 601 (1960)
T TIGR02760 598 KASV 601 (1960)
T ss_pred Ccce
Confidence 4443
No 43
>PF13245 AAA_19: Part of AAA domain
Probab=99.26 E-value=1.1e-11 Score=109.50 Aligned_cols=57 Identities=47% Similarity=0.762 Sum_probs=50.9
Q ss_pred HHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHH
Q psy3251 512 AVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 512 AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL 568 (959)
||..++. +++.+|+||||||||+|++.++..++.. ++.+||+++|||.|+|+|.+|+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 6776776 8899999999999999999999998853 3678999999999999999998
No 44
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.24 E-value=1.2e-11 Score=141.44 Aligned_cols=60 Identities=32% Similarity=0.411 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHH------hcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHH
Q psy3251 504 DLNRSQVYAVKHA------IQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQL 564 (959)
Q Consensus 504 ~LN~sQ~~AV~~a------l~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L 564 (959)
.||++|+.++..+ .......|.||+|||||+++.+++..+.. .+..+++||+|..||.++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHHHhc
Confidence 4899999998877 33566789999999999999999876544 467899999999999998
No 45
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=99.06 E-value=2.8e-10 Score=128.02 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=59.8
Q ss_pred EEeccccCCchhHhhhhhhhhcc-----CCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHH
Q psy3251 730 FRLEVQYRMHPELSKFPSNFFYE-----GSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEA 804 (959)
Q Consensus 730 ~~L~~qYRmhp~I~~f~s~~fY~-----g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA 804 (959)
+.|++|||+++.|.++.|.+|-. ..-... ..... .......+..++... ....|+
T Consensus 1 i~L~~NyRS~~~Iv~~~N~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~------------~~~~e~ 60 (351)
T PF13361_consen 1 ITLTTNYRSSPNIVDFANRLFENILPNDNKDRYE-----KEIQS---AENSEDGKISIIEFD------------NEEEEA 60 (351)
T ss_dssp EEE-EESSS-HHHHHHHHHHHCC---TTSSSSCC-----CEEEE---SSTCEESSEEEEEES------------SHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHHhhhhhhccchhh-----hhhcc---ccccccCCceeeccC------------CHHHHH
Confidence 57999999999999999999822 111000 00000 000011222222222 234588
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhc
Q psy3251 805 SNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQ 844 (959)
Q Consensus 805 ~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~ 844 (959)
+.+.+.+.++...|+++++|+||++.+.+...|.+.|...
T Consensus 61 ~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~ 100 (351)
T PF13361_consen 61 EYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEA 100 (351)
T ss_dssp HHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhh
Confidence 9999999999888999999999999999999888865433
No 46
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.99 E-value=1.9e-09 Score=112.75 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCC-CEEEEcccH
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGS-PVLVCAPSN 558 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~-rILV~ApSN 558 (959)
..+|..|..++...+..+++++.||+|||||.++.+.+.+++..+.. +|+++-|.-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 35899999999999999999999999999999999999888877443 555554443
No 47
>PRK10536 hypothetical protein; Provisional
Probab=98.93 E-value=5.2e-09 Score=112.30 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHH
Q psy3251 499 APNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAV 561 (959)
Q Consensus 499 ~~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~Av 561 (959)
.......|..|..++......+++++.||+|||||+++.++....+..+..+-++++.++..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 344567999999999988888999999999999999999988866543333444444444333
No 48
>KOG1804|consensus
Probab=98.82 E-value=1.3e-09 Score=131.72 Aligned_cols=392 Identities=23% Similarity=0.283 Sum_probs=245.3
Q ss_pred CCCCCHHHHHHHHHHh-----cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc----C
Q psy3251 502 LPDLNRSQVYAVKHAI-----QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT----G 572 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al-----~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~----g 572 (959)
.+.+|..|..|+.... ..+..|+.|+ |+|+|.+++..+..+......+++++.+++.|++......... +
T Consensus 118 ~~~~~~~~~~~l~~~~~~~l~e~~P~L~~G~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ir~y~~~~v~~~ 196 (775)
T KOG1804|consen 118 EPRLNALQKGALLAITVPLLRELPPSLLIGP-GTGETLELAQAVKSLLQQEEAKILILLHSESAADIYIREYLHPYVEEG 196 (775)
T ss_pred chhhhhhhcccccceeccccccCCcccccCC-ccccceeecchhhcccccccccceEeechhHHHHHHHHHhhccccccc
Confidence 4567777776665432 2456788898 9999999999888887777789999999999976665544321 2
Q ss_pred CeE---EEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeee
Q psy3251 573 LKV---VRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICC 649 (959)
Q Consensus 573 l~v---vRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~ 649 (959)
.+. .|+....+..+....... ... .+.. ....+. .-....+++ .+|++.
T Consensus 197 ~~~~~~~r~~~~~r~l~~~~pvv~-------~~~----------------~if~-~~~~~~---~pq~~~~~~-Hrv~~~ 248 (775)
T KOG1804|consen 197 LPEATPLRVYSRKRPLAQVNPVVL-------QYC----------------FIFD-SHITFR---RPQVEDLFK-HRVVVV 248 (775)
T ss_pred ccccccccceeecccccccCCcee-------eee----------------eecc-chhhhc---cchhhhhcc-cceeEe
Confidence 221 133322222111100000 000 0000 000000 000112233 677777
Q ss_pred eccccC---CcccccCCcCEEEEECCCCCChhhhHhhhhh--cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHH
Q psy3251 650 TCVGAG---DPRLLKIKFHSILIDESMQATEPECMVPVIL--GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV 724 (959)
Q Consensus 650 T~~~a~---~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~--~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~ 724 (959)
|..... ...+....|.+++.|||.++.+++.+.|+.+ ..++++|.||+.||-|.+.+.......+. .+..++..
T Consensus 249 ~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~ql~~~l~s~~~~~~~~~-~~~~~~~~ 327 (775)
T KOG1804|consen 249 TLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQLTPFLNSVAREEQALH-LLLCRLPE 327 (775)
T ss_pred ecceeecccccCCCCCceeeeeHHHHHhcCCceeecccccCCCCceeeecccccccccchhhhhhhhhhhh-hccccccc
Confidence 765543 3334445789999999999999999999775 45899999999999998876655444433 22222221
Q ss_pred ----cCCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccC
Q psy3251 725 ----LGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVN 800 (959)
Q Consensus 725 ----~g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N 800 (959)
.|.+.+-.+.|||.+-.|..|.+..||........+.. +.+-+.-..|..|....+.+....+...+.|
T Consensus 328 ~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p~~a~~-------k~~~~rl~~p~~~~~~~~~~~~~~~~~~~~~ 400 (775)
T KOG1804|consen 328 PYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAPSNASG-------KQPAHRLHYPLTFSTARGEDVRAKSSTAWYN 400 (775)
T ss_pred ccccccCCCcCCccchHHHHHHHHhcchHHHhhccccccccc-------ccccccccccccccccccccccccchhHHhh
Confidence 24445678999999999999999999975433222111 1122222467777777777666666667788
Q ss_pred HHHHHHHHHHHHHHHHcC-----C-CCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCcccc---EE
Q psy3251 801 RTEASNVEKITTRFIRCG-----M-KPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKD---LI 871 (959)
Q Consensus 801 ~~EA~~V~~iv~~Ll~~g-----~-~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~D---iV 871 (959)
..|...++.-++.+.+.. + .-..+|++++|..|+..++..|...+... +...---+|..+. .|
T Consensus 401 ~~~v~~~~~~~e~~~~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~DeAg~s--------tEpe~lv~i~~~~~~~~v 472 (775)
T KOG1804|consen 401 NAEVSEVVEKVEELRKVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDEAGVS--------TEPELLVPGKQFRQPFQV 472 (775)
T ss_pred hHHHHHHHHHHHHHhhccceEEEEeeccceeeeecccccccceeeeeecccccc--------cCcccccccccccceeEE
Confidence 888888887777776432 1 23468999999999999988774332211 1111111222222 45
Q ss_pred EEEccccC--------CCCCccCCCCcCceeecchhhcccEEEEEccccccC----CchHHHHHHHHHHcCceeeccCcc
Q psy3251 872 IMSCVRSN--------DHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK----QPLWNNLLNFYKEQKVLVEGPLNN 939 (959)
Q Consensus 872 IlS~Vrsn--------~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~----~~~W~~ll~~~~~~~~~v~g~~~~ 939 (959)
++++...- .....| .++..+|.|+|||.+.+-.+|+.+.+.. ..+|.++...+-.+..+.+|-|.-
T Consensus 473 vLsgdh~Qlgpv~~s~~A~~~g--l~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~eL~~ 550 (775)
T KOG1804|consen 473 VLSGDHTQLGPVSKSARAEELG--LDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLGELTA 550 (775)
T ss_pred EEccCcccccccccchhhhhhc--ccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccccccccceee
Confidence 55543321 112223 3588999999999999999999998865 578999999999998887776554
Q ss_pred h
Q psy3251 940 L 940 (959)
Q Consensus 940 l 940 (959)
-
T Consensus 551 ~ 551 (775)
T KOG1804|consen 551 E 551 (775)
T ss_pred e
Confidence 3
No 49
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=98.78 E-value=3.5e-07 Score=119.50 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=91.6
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeechh-HHhhcCcHHHHHHHHH----cCC---ccEEe
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMCKK-AARAGLSQSLFERLVV----LGI---RPFRL 732 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s~~-a~~~gl~~SLFeRL~~----~g~---~~~~L 732 (959)
.+.+|+|||+++.+..+ .+-.|...++.++++||..|-. .... ..-..+....+.++.. .+. .++.+
T Consensus 196 ~~~~I~VDeFqdf~~~Q~~lI~~L~~~~~~v~Vv~d~Dq~~---~~~~~~~lf~~~~~~~~~l~~~~~~~~~~~~~~i~~ 272 (1158)
T TIGR02773 196 KGAEIYIDGFHSFTPQEYSVIGALMKKAKKVTVTLTLDGPK---SLEDELSLFRATSETYYRLKELAKELGIEVEEPIFL 272 (1158)
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHhCCcEEEEEEeCCcc---ccCCccccchhHHHHHHHHHHHHHHcCCCccccccc
Confidence 46899999999999776 3334445578999999999951 0000 0001122223333322 232 23445
Q ss_pred ccccCC--chhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHH
Q psy3251 733 EVQYRM--HPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKI 810 (959)
Q Consensus 733 ~~qYRm--hp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~i 810 (959)
..+++. ++.|..+..+++-.+.. +....+.++.++...+ -..|++.|.+.
T Consensus 273 ~~~~~~~~~~~l~~Lek~l~~~~~~----------------~~~~~~~~I~i~~~~~------------~~~Eae~va~~ 324 (1158)
T TIGR02773 273 NEYRPNKKNKELAHLEKQFDARPFN----------------AYIEEDGSISIFEANN------------RRAEVEGVARQ 324 (1158)
T ss_pred ccccCCCCCHHHHHHHHHHhhCCCC----------------CCCCCCCCeEEEEcCC------------HHHHHHHHHHH
Confidence 555553 66776665555422110 0001112333333221 34699999999
Q ss_pred HHHHHHc-CCCCCcEEEEccC-hHHHHHHHHHHHhcC
Q psy3251 811 TTRFIRC-GMKPEQIGVITPY-EGQRAFLVQHMQYQG 845 (959)
Q Consensus 811 v~~Ll~~-g~~~~~IgIITPY-~~Q~~~L~~~L~~~~ 845 (959)
|.++++. |++++||+|+++. +.+...|...|...+
T Consensus 325 I~~l~~~~g~~~~DIAVL~R~~~~y~~~i~~~f~~~~ 361 (1158)
T TIGR02773 325 ILRLTRDKQYRYQDIAILTRDLEDYAKLVEAVFSDYE 361 (1158)
T ss_pred HHHHHHcCCCChhheEEEeCCHHHHHHHHHHHHHhCC
Confidence 9999876 8999999999999 899999988887543
No 50
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.77 E-value=8.2e-08 Score=98.05 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 503 PDLNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~-~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
..+++.|.+++..++.. ...+|.||+|||||+++...+...+.. ...++|+++|++.++.++..++....
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 46899999999999887 899999999999999888887776655 35789999999999999999887653
No 51
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.61 E-value=2.8e-07 Score=88.44 Aligned_cols=52 Identities=29% Similarity=0.482 Sum_probs=45.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
..+|.||||||||+++...+..+... ...++++++|++..+++..+++....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~ 54 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF 54 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHh
Confidence 46899999999999999998888765 56799999999999999999887643
No 52
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.43 E-value=1.9e-06 Score=87.04 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
++.|.+++..+..+.-.+|.||+|+|||......+...+... ..++++++|+...++++.+++...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccc
Confidence 468999999999877899999999999999887776666553 358999999999999999998765
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.38 E-value=3.1e-06 Score=101.30 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
..|.+.|.+||..++.+.-.++++|.|+|||.+++.++..++.....++|+++||...+++..+++.+.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 3688899999999998887899999999999998877766666544599999999999999999988643
No 54
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.37 E-value=2.4e-05 Score=95.76 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc-----CCe
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT-----GLK 574 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~-----gl~ 574 (959)
+..+++-|.+|+..++...-.++++|.|||||.+....+.+.+.. ...++||++||...+.++++.+... +++
T Consensus 26 ~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 346789999999999988889999999999999865444333322 3457999999999999998887653 445
Q ss_pred EEEee
Q psy3251 575 VVRVC 579 (959)
Q Consensus 575 vvRl~ 579 (959)
++.++
T Consensus 106 v~~~~ 110 (629)
T PRK11634 106 VVALY 110 (629)
T ss_pred EEEEE
Confidence 54443
No 55
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.33 E-value=7.2e-06 Score=85.74 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|++|+...+...-.+|.+|+|+|||.+ +..++..+... .+.++++++|+...+.+..+.+...
T Consensus 20 ~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 20 EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 357889999999999888899999999999988 44555555554 4568999999999999998877654
No 56
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.33 E-value=5.1e-05 Score=89.92 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++-|.+|+..++...-.+++||.|||||.+....+.+.+.. ...++|+++||...++++.+.+...
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 346889999999999998889999999999998754444333332 2347999999999999998877653
No 57
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=1.3e-07 Score=88.10 Aligned_cols=50 Identities=26% Similarity=0.248 Sum_probs=40.5
Q ss_pred ceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEE
Q psy3251 854 EIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVI 907 (959)
Q Consensus 854 ~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIv 907 (959)
.+.+.|+|++||+|+|.||+........ -....|+||||+||||+.|+||
T Consensus 55 ~~~~~Tih~akGle~d~V~v~~~~~~~~----~~~~~~~lYva~TRA~~~L~iv 104 (104)
T PF13538_consen 55 HAYAMTIHKAKGLEFDAVIVVDPDSSNF----DELSRRLLYVAITRAKHELYIV 104 (104)
T ss_dssp CCSEEETGGCTT--EEEEEEEEGGGGSG----CGCHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEhHHhcCccccEEEEEcCCcccC----CchhhccEEeeHhHhhhhhCCC
Confidence 7889999999999999999998776511 1345788999999999999987
No 58
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.17 E-value=1.8e-05 Score=93.00 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH-HHHHHHc-----cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATI-VYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~i-i~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++-|.+|+..++...-.++.+|+|||||.+.... +.++... ++.++|+++||...+.++.+.+..
T Consensus 22 ~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~ 95 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE 95 (434)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH
Confidence 4577899999999998888999999999999885443 3344332 235899999999999999887764
No 59
>PTZ00424 helicase 45; Provisional
Probab=98.14 E-value=1.7e-05 Score=91.94 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|++|+|||||.+....+...+.. .+.++|+++|+...+.++.+.+...
T Consensus 49 ~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999988888999999999999876555555443 3568999999999999988776654
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.13 E-value=3e-05 Score=95.84 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh-cCCeEEEe
Q psy3251 503 PDLNRSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR-TGLKVVRV 578 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~-~gl~vvRl 578 (959)
..|++.|++|+..++. ....+++||+|||||.+...++...+.. +.++|+++|+..-+.++.+++.+ .+.++..+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-GKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 4699999999999876 3679999999999999988777776665 67899999999999999999976 35555544
Q ss_pred e
Q psy3251 579 C 579 (959)
Q Consensus 579 ~ 579 (959)
.
T Consensus 222 ~ 222 (679)
T PRK05580 222 H 222 (679)
T ss_pred E
Confidence 3
No 61
>PRK02362 ski2-like helicase; Provisional
Probab=98.05 E-value=1.2e-05 Score=100.79 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc---CCeEE
Q psy3251 501 NLPDLNRSQVYAVKH-AIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT---GLKVV 576 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~-al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~---gl~vv 576 (959)
++..|++.|.+|+.. .+...-.+|.+|.|+|||.+....+...+. ++.++++++|+..-+.+..+++.+. |+++.
T Consensus 20 g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 20 GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 345799999999988 445678899999999999997655444443 4679999999999999999988765 55554
Q ss_pred Ee
Q psy3251 577 RV 578 (959)
Q Consensus 577 Rl 578 (959)
.+
T Consensus 99 ~~ 100 (737)
T PRK02362 99 IS 100 (737)
T ss_pred EE
Confidence 44
No 62
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.04 E-value=2.5e-05 Score=91.96 Aligned_cols=65 Identities=28% Similarity=0.360 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQ----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..|.+.|.+|+.+... ..-.+|.-|+|+|||.+++.++..+. .++||++|+...+++..+++...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999987 78899999999999999999997663 35999999999999999887653
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.03 E-value=4.3e-05 Score=94.75 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQR------PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~------~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|++.|.+|+..+... --.|++||.|||||.+....+...+.. +.++|++|||...+.+..+.+.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-GYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccHHHHHHHHHHHHHH
Confidence 6999999999988753 247999999999999987777666554 679999999999999999988764
No 64
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.02 E-value=4.3e-05 Score=93.99 Aligned_cols=67 Identities=30% Similarity=0.434 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHhcC---C---cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQR---P---LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~---~---l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|++.|++|+..++.. + ..||+||.|||||.+....+...+.. +.++++++||...+.+..+.+.+.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-GYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEECCHHHHHHHHHHHHHHH
Confidence 6999999999988753 2 36999999999999876666555554 679999999999999999888754
No 65
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.01 E-value=2.9e-05 Score=76.37 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCChHHH-HHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 519 RPLSLIQGPPGTGKTV-TSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~-Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
..+++|.=.||+|||+ ++.+++.+.++. +.|+||++||...++++.+.|....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-RLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-T--EEEEESSHHHHHHHHHHTTTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-cCeEEEecccHHHHHHHHHHHhcCC
Confidence 4578899999999999 688888888876 7899999999999999999987543
No 66
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.98 E-value=6.2e-05 Score=89.12 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHHcc-------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVKQT-------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~~-------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++-|.+|+..++...-.++++|.|||||.+....+.+ +.... +.++||++||...+.++.+.+...
T Consensus 21 ~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 34678999999999998778999999999999885554433 33221 236999999999999999888753
No 67
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.94 E-value=7.2e-05 Score=87.72 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHH-HHHHHc--------cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIV-YQLVKQ--------TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii-~~Ll~~--------~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+..+++-|.+|+..++...-.++++|.|||||.+....+ ..+... .+.++||++||...|.++.+.+..
T Consensus 28 ~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 28 FHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 346789999999999988889999999999999854433 344432 124799999999999998776654
No 68
>PRK00254 ski2-like helicase; Provisional
Probab=97.94 E-value=8.5e-05 Score=92.88 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHH-HHHHHHHccCCCEEEEcccHHHHHHHHHHHHh---cCCeEE
Q psy3251 502 LPDLNRSQVYAVKH-AIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR---TGLKVV 576 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~-al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~---~gl~vv 576 (959)
...||+-|.+|+.. .+.+.-.+|.+|.|||||.+... ++..+.. .+.++++++|+..-+++..+++.. .++++.
T Consensus 21 ~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~ 99 (720)
T PRK00254 21 IEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVA 99 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEE
Confidence 45789999999986 55677889999999999998744 4444443 467999999999999999988764 345544
Q ss_pred Ee
Q psy3251 577 RV 578 (959)
Q Consensus 577 Rl 578 (959)
.+
T Consensus 100 ~~ 101 (720)
T PRK00254 100 MT 101 (720)
T ss_pred EE
Confidence 43
No 69
>PRK01172 ski2-like helicase; Provisional
Probab=97.92 E-value=5.3e-05 Score=94.06 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.|++.|.+|+.....+.-.+|.+|.|||||.++...+...+.. +.++++++|+..-+++..+.+.+
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~ 87 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSR 87 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHH
Confidence 4899999999998888889999999999999876555554443 57899999999999999887764
No 70
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.92 E-value=2e-05 Score=80.21 Aligned_cols=64 Identities=25% Similarity=0.430 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQ-------RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~-------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|.+.|.+|+..+.. .+..+|.||+|||||.+++.++..+.. ++++++|+...++++.+.+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHh
Confidence 478899999999884 578999999999999999998888875 9999999999999999998543
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=0.00012 Score=89.64 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHhcCC---cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRP---LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~---l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..|=+.|.+|+...+.++ -.+|.-|+|+|||.+...++..+ +.++||++|+...+++..+.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 357789999999988543 57999999999999998877654 468999999999999999988764
No 72
>PTZ00110 helicase; Provisional
Probab=97.84 E-value=0.00018 Score=86.99 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHH-HHHHHHHHHc------cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 501 NLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTS-ATIVYQLVKQ------TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~------~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
++..+++-|.+|+..++...-.++.+|.|||||.+. .-++.++... .+..+||++||...|.++.+.+.+.
T Consensus 149 g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 149 GFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 355789999999999998888899999999999874 3344444433 1346999999999999998887764
No 73
>PRK13766 Hef nuclease; Provisional
Probab=97.83 E-value=0.00014 Score=91.70 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+.-+.|+.++..++.. -.||..|.|+|||.++..++..++..++.++|+++||...+.+..+.+.+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34556799999888876 679999999999998887777777666789999999999999988888753
No 74
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.80 E-value=0.00015 Score=86.32 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHH-HHHHHHHHHcc--------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTS-ATIVYQLVKQT--------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~~--------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++-|.+|+..++...-.++.+|.|||||.+. .-++..+++.+ ..++|+++||...+.++.+.+...
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l 185 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL 185 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 34688999999999998888899999999999774 33445555542 357999999999999998877653
No 75
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.78 E-value=0.00017 Score=90.10 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
...+++-|.+|+..++...-.++..|.|||||..... ++..+.+.++.++|+++||..-+.+..+++.+.+
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~ 105 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT 105 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc
Confidence 3468899999999999888899999999999988544 4444555556789999999999999999988764
No 76
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.78 E-value=0.00026 Score=89.86 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQR------PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~------~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+++.|.+||..++.. --.||+||.|||||.++...+...+.. +.++++++||..-|.+..+.+.+
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-g~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-GKQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-CCeEEEEeCcHHHHHHHHHHHHH
Confidence 5799999999998763 246999999999999987666555554 57999999999999999888775
No 77
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=97.77 E-value=7.6e-05 Score=82.67 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
....++.|...+.++..+.+.+=.||.|||||+.++..+...+.. .-.+||+.=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 345799999999999999999999999999999998888777766 3357888888
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.75 E-value=0.00022 Score=87.56 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCC-HHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH---------HHH----c-cCCCEEEEcccHH
Q psy3251 495 KHFSAPNLPDLN-RSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ---------LVK----Q-TGSPVLVCAPSNI 559 (959)
Q Consensus 495 ~~~~~~~~~~LN-~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~---------Ll~----~-~~~rILV~ApSN~ 559 (959)
+.|..-.+..|- .-|.+++..++.+...+++|+.|||||+.+-..+.. .+. . ...+|+|++|+..
T Consensus 154 ~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prre 233 (675)
T PHA02653 154 EPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVA 233 (675)
T ss_pred CccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHH
Confidence 334433344444 358888888888999999999999999876443321 111 1 2458999999999
Q ss_pred HHHHHHHHHHh
Q psy3251 560 AVDQLTEKIHR 570 (959)
Q Consensus 560 AvD~L~erL~~ 570 (959)
+|.++.+++.+
T Consensus 234 La~qi~~~i~~ 244 (675)
T PHA02653 234 LVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 79
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.75 E-value=0.00018 Score=87.47 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHH-HHHHHHcc--------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATI-VYQLVKQT--------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~i-i~~Ll~~~--------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++-|.++|-.++...-.++++|.|||||.+.... +..+++.+ ..++||++||...+.++.+.+.+.
T Consensus 29 ~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 29 FTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 34678999999999998888999999999999885444 44454321 357999999999999999887654
No 80
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.74 E-value=0.00014 Score=93.89 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 504 DLNRSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
.|=+.|.+||..+.. .+-.||+.|.|||||.|++.++..|++. ...+||++++++.-+++..+.+...+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 467899999977652 3457999999999999999999888876 34689999999999999999887653
No 81
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.71 E-value=0.00024 Score=85.44 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHH-HHHHHHHHHc--------cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 501 NLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTS-ATIVYQLVKQ--------TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~--------~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
++..+++-|.+|+..++...-.++.+|.|||||.+- ..++.++... .+.++|+++||..-+.++.+.+..
T Consensus 140 g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 140 GYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 456789999999999998888999999999999863 3444444421 245799999999999888776654
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.70 E-value=0.00016 Score=89.90 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH---hcCCeEEEe
Q psy3251 503 PDLNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH---RTGLKVVRV 578 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~-~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~---~~gl~vvRl 578 (959)
.+|.+.|+.||...+.. .-.||..|-|+|||-++-.++..-+..++.+++.++|++.-|.+..+++. ..|++|.-.
T Consensus 30 ~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~ 109 (766)
T COG1204 30 DELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS 109 (766)
T ss_pred HHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe
Confidence 37888999999987765 88999999999999998766666555557899999999999999999887 668887654
Q ss_pred ecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccC---
Q psy3251 579 CAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAG--- 655 (959)
Q Consensus 579 ~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~--- 655 (959)
.+.... ..+-+..++||++|...+-
T Consensus 110 TgD~~~----------------------------------------------------~~~~l~~~~ViVtT~EK~Dsl~ 137 (766)
T COG1204 110 TGDYDL----------------------------------------------------DDERLARYDVIVTTPEKLDSLT 137 (766)
T ss_pred cCCccc----------------------------------------------------chhhhccCCEEEEchHHhhHhh
Confidence 332110 0112567889999975432
Q ss_pred -CcccccCCcCEEEEECCCCCChh
Q psy3251 656 -DPRLLKIKFHSILIDESMQATEP 678 (959)
Q Consensus 656 -~~~l~~~~fd~VIIDEAsQ~~Ep 678 (959)
+....-..++.|||||+.++...
T Consensus 138 R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 138 RKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hcCcchhhcccEEEEeeeeecCCc
Confidence 11111227899999999888766
No 83
>KOG1802|consensus
Probab=97.69 E-value=1.9e-05 Score=92.30 Aligned_cols=52 Identities=77% Similarity=1.253 Sum_probs=49.9
Q ss_pred CCccccccccchhhhhhhhhhhhhhhcccccceeeeeecccccceeeEeeec
Q psy3251 331 GDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLA 382 (959)
Q Consensus 331 ~~~~~Y~~~f~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~~ 382 (959)
.++++|++.|.|||++||++++.+|||+.+++++|||+.|+|+|++++|.++
T Consensus 237 ~da~~y~~vf~pliklea~ydk~~Kes~~q~~~tvRW~~gLnkk~~a~f~~~ 288 (935)
T KOG1802|consen 237 EDAYEYQNVFSPLIKLEADYDKRLKESQTQENGTVRWDIGLNKKRLAYFTLP 288 (935)
T ss_pred cchHHHhhhcchhhhhhhhhhhhhhhhcccccceEEeeeccccceEEEEecC
Confidence 3799999999999999999999999999999999999999999999999965
No 84
>PRK09401 reverse gyrase; Reviewed
Probab=97.67 E-value=0.00025 Score=92.13 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
.+++-|+.++..++...-.++++|.|||||..+..++..+.. .+.++||++||..-|.++.+++...+
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 467899999999998888899999999999765544444433 47789999999999999999998753
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.65 E-value=0.00027 Score=91.86 Aligned_cols=67 Identities=25% Similarity=0.286 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+.+-|+.++..++...-.++++|+|||||.++..++..+.. .+.++||++||..-|.++.+++...
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 467899999999998888899999999999866555544444 4678999999999999999988764
No 86
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.00067 Score=80.72 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
+..+.+-|.+||..++...-.+|.+|.|||||.+-..- .+. .+...||++|+..-+.+..+++...++++.-+++
T Consensus 9 ~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp--~l~--~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~ 83 (470)
T TIGR00614 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLP--ALC--SDGITLVISPLISLMEDQVLQLKASGIPATFLNS 83 (470)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHH--HHH--cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 34688899999999998888999999999999653222 222 2568999999999999888999888887665543
No 87
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.62 E-value=0.00027 Score=78.52 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHH-HHHHHHc-cCCCEEEEcc
Q psy3251 501 NLPDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATI-VYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~i-i~~Ll~~-~~~rILV~Ap 556 (959)
++...|.+|+-|+...+.. ++.-+.|.+|||||-.+.+. +.+-+.. .-.+|+|.=|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp 284 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRP 284 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecC
Confidence 3557899999999988875 56778999999999885443 3344433 3345666655
No 88
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.59 E-value=0.00038 Score=86.09 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhc----------CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 506 NRSQVYAVKHAIQ----------RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 506 N~sQ~~AV~~al~----------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
-..|..||..+.. .+-.+|+-|.|||||.|++.++..|+.. ...+||++++...-++++.+.+...+
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 4579889887652 2468999999999999999999888754 45689999999999999999888754
No 89
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.58 E-value=0.00079 Score=87.37 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQR------PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~------~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+++.|.+|+..++.. .-.|++||.|||||.++...+...+. .+.++||++||..-+.+..+.+.+
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999988763 35799999999999987766655554 477999999999999999888765
No 90
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.00068 Score=76.75 Aligned_cols=57 Identities=39% Similarity=0.570 Sum_probs=42.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~vvR 577 (959)
.+.++.||||+|||||++.++..+... +.+|++++ .+ ..|++++.......+++++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcCcHHHHHHHHHHHHHcCCceec
Confidence 367899999999999999999877654 56776654 33 56778887766667776653
No 91
>PRK14701 reverse gyrase; Provisional
Probab=97.50 E-value=0.00078 Score=89.73 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++-|+.++..++...-.++++|.|||||.+...++..+. ..+.++||++||..-+.++.+++...
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 36789999999999988889999999999996444433333 24668999999999999999998764
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.47 E-value=0.00035 Score=87.69 Aligned_cols=61 Identities=18% Similarity=0.451 Sum_probs=48.1
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+..|..++ .++..+|+||+|||||+.+...+..... .+.+|+|+.|+..||.++++++.+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~ 67 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLAS 67 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 444555555 4689999999999999998776654432 356899999999999999999864
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.00068 Score=81.18 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=45.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc-CCeEEEe
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT-GLKVVRV 578 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~-gl~vvRl 578 (959)
|++||.|+|||.+...++...+.. +.++|+++|+..-+.++.+++.+. +.++..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vl 56 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVL 56 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEE
Confidence 589999999999988888777765 678999999999999999999763 4444443
No 94
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.43 E-value=2.5e-05 Score=80.03 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=31.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
+|.|+.|.|||+++..++.+++.....+|+||||+..++..+.+.+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~ 47 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAE 47 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHH
Confidence 58999999999999998888887756799999999999999977543
No 95
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.43 E-value=0.0019 Score=79.24 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEee
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~ 579 (959)
..+++-|.+|+..++...-+++..|.|+|||.+...- .++ .+..++|++|+..-+.+-.+++...|+.+..+.
T Consensus 12 ~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lp--al~--~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~ 84 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVP--ALL--LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLN 84 (591)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHH--HHH--cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4688999999999998888899999999999875422 233 246789999999998888899988888766554
No 96
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.43 E-value=0.00082 Score=85.67 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HHHHHHHc-------cCCCEEEEcccHHHHHHHHHHHH
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQ-------TGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~-------~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..|++-|.+|+..++...-.+|++|.|||||..... ++..+... .+.++|+++|+...+.++.+++.
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~ 105 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLE 105 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 358999999999999888999999999999998644 44445432 12359999999999998887764
No 97
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.0007 Score=84.51 Aligned_cols=65 Identities=15% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHHHccC--CCEEEEcccHHHHHHHHHHHHhc
Q psy3251 507 RSQVYAVKHAI----QRPLSLIQGPPGTGKTVTSATIVYQLVKQTG--SPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 507 ~sQ~~AV~~al----~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~--~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+.|++....+. .....++.+|.|||||..+...+.......+ .+|..|+.|+.-..++.+-|.+.
T Consensus 13 ~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 13 PEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 57887665544 3678999999999999765444444444323 68999999999999888888763
No 98
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.39 E-value=0.0012 Score=86.71 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEcCCC-ChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQR--PLSLIQGPPG-TGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~--~l~LIqGPPG-TGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~er 567 (959)
.++..|..|+..++.. ++.+|.|..| ||||+++..++ .++...+.+|.++||++.|+..|.+.
T Consensus 281 ~~~~~q~~Av~~il~dr~~v~iv~~~GgAtGKtt~l~~l~-~~a~~~G~~V~~lApt~~a~~~L~e~ 346 (1623)
T PRK14712 281 PRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMAREQGREVQIIAADRRSQMNLKQD 346 (1623)
T ss_pred ccchhHHHHHHHHhcCCCceEEEEecccccccHHHHHHHH-HHHHhCCcEEEEEeCCHHHHHHHHhc
Confidence 3678999999999964 4667766666 99999999666 55566789999999999999998654
No 99
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00069 Score=83.12 Aligned_cols=68 Identities=28% Similarity=0.351 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 502 LPDLNRSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
...||..|..|+..+... ...|++|.+|+|||-+-..+|...+.. ++.+|++.|--.-..++.+|+..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-CCEEEEEeccccchHHHHHHHHH
Confidence 457999999999988765 678999999999999999999988887 68999999999999999998875
No 100
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.36 E-value=0.0015 Score=72.65 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=45.9
Q ss_pred CHHHHHHH---HHHh-cCCcEEEEcCCCChHHHHHHHHHH-HHHHccCC----CEEEEcccHHHHHHHHHHHHh
Q psy3251 506 NRSQVYAV---KHAI-QRPLSLIQGPPGTGKTVTSATIVY-QLVKQTGS----PVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 506 N~sQ~~AV---~~al-~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~~~~----rILV~ApSN~AvD~L~erL~~ 570 (959)
-+.|.+.+ ..++ .++..+|.+|.|||||..+...+. .+...+.. +|++++.|+.-.......+.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 56788743 3344 367889999999999987655543 34433332 899999999987777666654
No 101
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.36 E-value=0.0015 Score=72.65 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=45.9
Q ss_pred CHHHHHHH---HHHh-cCCcEEEEcCCCChHHHHHHHHHH-HHHHccCC----CEEEEcccHHHHHHHHHHHHh
Q psy3251 506 NRSQVYAV---KHAI-QRPLSLIQGPPGTGKTVTSATIVY-QLVKQTGS----PVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 506 N~sQ~~AV---~~al-~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~~~~----rILV~ApSN~AvD~L~erL~~ 570 (959)
-+.|.+.+ ..++ .++..+|.+|.|||||..+...+. .+...+.. +|++++.|+.-.......+.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 56788743 3344 367889999999999987655543 34433332 899999999987777666654
No 102
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.35 E-value=0.00047 Score=83.59 Aligned_cols=68 Identities=29% Similarity=0.317 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+=..|..||.+... ++=.||.=.+|||||.|+.+++..|++.+ -+|||.+|-.|.-+++........
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 455679999987652 34478888899999999999999999873 468999999999999998776543
No 103
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.016 Score=69.71 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHH--ccCCC-EEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVK--QTGSP-VLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~--~~~~r-ILV~ApSN~AvD~L~erL~~~ 571 (959)
...++-|..||-.++...-.+++++.|||||.. +.-++..+.. ..... .||++||...|.++.+-+...
T Consensus 50 ~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 50 EEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 356789999999999998899999999999876 3445555442 22222 899999999999999887653
No 104
>KOG0354|consensus
Probab=97.33 E-value=0.00091 Score=81.10 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 497 FSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 497 ~~~~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
|.-|....|=..|.+.+..|| ..-+||..|-|+|||.+++.++...++- +..||+++||+.--|.+-..++...+..
T Consensus 55 ~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 55 WIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred ccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 334444567789999999999 7889999999999999999998877765 6789999999998888877776665543
No 105
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.32 E-value=0.00054 Score=86.12 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=46.2
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+..|..++ .++..+|+||+|||||+.+...+..-.. ...+|+|+.|+..||.++++++.+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-~~~~ilvlqPrR~aA~qia~rva~ 70 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-INGKIIMLEPRRLAARNVAQRLAE 70 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-cCCeEEEECChHHHHHHHHHHHHH
Confidence 445555555 4678999999999999998654432211 235899999999999999999864
No 106
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.30 E-value=0.00066 Score=74.99 Aligned_cols=140 Identities=23% Similarity=0.310 Sum_probs=80.7
Q ss_pred HHHHHHHHhc-------------CCcEEEEcCCCChHHHHHHHHHHHHHHccCC----CEEEEcccHHHHHHHHHHHHhc
Q psy3251 509 QVYAVKHAIQ-------------RPLSLIQGPPGTGKTVTSATIVYQLVKQTGS----PVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 509 Q~~AV~~al~-------------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~----rILV~ApSN~AvD~L~erL~~~ 571 (959)
|.+||...+. .+-.++.-.+|+|||.++..++..+...... ++||++|+ ..+.+-...+.+.
T Consensus 2 Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 2 QLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccc
Confidence 6777765532 2345677789999999999999877776333 49999999 5566666666554
Q ss_pred C----CeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCcee
Q psy3251 572 G----LKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVI 647 (959)
Q Consensus 572 g----l~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI 647 (959)
. .+++.+...... ...........+++
T Consensus 81 ~~~~~~~v~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~vv 111 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSER-------------------------------------------------RRLSKNQLPKYDVV 111 (299)
T ss_dssp SGT-TS-EEEESSSCHH-------------------------------------------------HHTTSSSCCCSSEE
T ss_pred ccccccccccccccccc-------------------------------------------------ccccccccccceee
Confidence 2 344444332100 00001224566777
Q ss_pred eeeccccC-------CcccccCCcCEEEEECCCCCChhhh-----HhhhhhcCCeEEEEccCCC
Q psy3251 648 CCTCVGAG-------DPRLLKIKFHSILIDESMQATEPEC-----MVPVILGAKQLILVGDHCQ 699 (959)
Q Consensus 648 ~~T~~~a~-------~~~l~~~~fd~VIIDEAsQ~~Epe~-----Lipl~~~~krvVLVGD~~Q 699 (959)
++|..... ...+....|+.||||||..+..... +.. .....+++|.|-|-+
T Consensus 112 i~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~-l~~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 112 ITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRK-LRARYRWLLSGTPIQ 174 (299)
T ss_dssp EEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHC-CCECEEEEE-SS-SS
T ss_pred eccccccccccccccccccccccceeEEEecccccccccccccccccc-cccceEEeecccccc
Confidence 77755443 1224456799999999988743332 222 224568889999877
No 107
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.30 E-value=0.0025 Score=78.19 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEe
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRV 578 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl 578 (959)
..+.+.|.+|+..++...-.++.+|.|+|||.+.. +-.+.. ...+||++|+..-+.+..+++...|+...-+
T Consensus 24 ~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~--lpal~~--~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~ 95 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQ--IPALVL--DGLTLVVSPLISLMKDQVDQLLANGVAAACL 95 (607)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHHHc--CCCEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 35778999999999988888999999999997643 222332 4679999999999999899988877765443
No 108
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.00071 Score=70.59 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=30.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
.+.+|.||||+|||+.+..++..+... +.++++..|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEec
Confidence 367999999999999999999888765 678888844
No 109
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.26 E-value=0.0014 Score=74.87 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=42.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+|+||.|+|||.+....+...+. ....++++++|+...++++.+++...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHH
Confidence 689999999999997776655543 35679999999999999999999875
No 110
>KOG2108|consensus
Probab=97.26 E-value=0.00027 Score=85.81 Aligned_cols=65 Identities=28% Similarity=0.382 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc---CCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT---GSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~---~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.||.+|..++... .+..-+|.| ||||||.++...+.+++..+ ..-|++.+.+|.|+|.+.+++..
T Consensus 13 ~l~~~q~~~~~~~-~~~~rviag-pgsgkt~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~~ 80 (853)
T KOG2108|consen 13 LLNKSQRFSALSP-LRRKRVIAG-PGSGKTLVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLIA 80 (853)
T ss_pred hhhhhhhhhhcCC-Ccccceeec-CCCCccchhhHHHHHHHhccCCCHHHHHHHhcCCccHHHHHHhHHH
Confidence 4777888766543 355667888 99999999999999988763 34599999999999999999975
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0021 Score=79.42 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
-..|+.=.+..+.+.-+-|.+|+|+||||....+...+... ++|++++-||..-|.+..+||.+.+
T Consensus 84 ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 84 WSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-GKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc-CCeEEEEecCHHHHHHHHHHHHHHH
Confidence 34699888888888888889999999999999888888876 5899999999999999999998753
No 112
>KOG0952|consensus
Probab=97.20 E-value=0.0016 Score=80.30 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc---------cCCCEEEEcccHHHHHHHHHHHHh-
Q psy3251 502 LPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ---------TGSPVLVCAPSNIAVDQLTEKIHR- 570 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---------~~~rILV~ApSN~AvD~L~erL~~- 570 (959)
...||.-|..+...|.. +...||.+|-|+|||.++...|.+++++ ..-||+.+||+.+.|.+++++..+
T Consensus 108 f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 108 FEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 34689999999988885 6789999999999999987777777774 456899999999999999887654
Q ss_pred ---cCCeEEEe
Q psy3251 571 ---TGLKVVRV 578 (959)
Q Consensus 571 ---~gl~vvRl 578 (959)
.|+.+.-+
T Consensus 188 l~~~gi~v~EL 198 (1230)
T KOG0952|consen 188 LAPLGISVREL 198 (1230)
T ss_pred cccccceEEEe
Confidence 35555444
No 113
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0017 Score=74.91 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc-CCe---EEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT-GLK---VVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~-gl~---vvRl~ 579 (959)
+--..|...++.++.. .+||.=|-|=|||.+++.++...+...++++|++|||.-.|.+=++.+.+. +++ ++-+
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l- 92 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL- 92 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee-
Confidence 3345688888888866 788899999999999988887655554559999999999999988877652 221 2222
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcc-
Q psy3251 580 AKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPR- 658 (959)
Q Consensus 580 ~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~- 658 (959)
.|+.+... ....+..++|+++|.....+..
T Consensus 93 --------------------------------------tGev~p~~-----------R~~~w~~~kVfvaTPQvveNDl~ 123 (542)
T COG1111 93 --------------------------------------TGEVRPEE-----------REELWAKKKVFVATPQVVENDLK 123 (542)
T ss_pred --------------------------------------cCCCChHH-----------HHHHHhhCCEEEeccHHHHhHHh
Confidence 12222211 1234667899999987654432
Q ss_pred ---cccCCcCEEEEECCCCCChhh
Q psy3251 659 ---LLKIKFHSILIDESMQATEPE 679 (959)
Q Consensus 659 ---l~~~~fd~VIIDEAsQ~~Epe 679 (959)
+....+.+||+|||..++=--
T Consensus 124 ~Grid~~dv~~lifDEAHRAvGny 147 (542)
T COG1111 124 AGRIDLDDVSLLIFDEAHRAVGNY 147 (542)
T ss_pred cCccChHHceEEEechhhhccCcc
Confidence 333479999999998887533
No 114
>KOG0991|consensus
Probab=97.18 E-value=0.00056 Score=71.73 Aligned_cols=27 Identities=41% Similarity=0.698 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
-|..+|.|||||||||.+..++..|+-
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 477899999999999999999888874
No 115
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.11 E-value=0.048 Score=65.78 Aligned_cols=251 Identities=17% Similarity=0.215 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHhc---CC---cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCC
Q psy3251 504 DLNRSQVYAVKHAIQ---RP---LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGL 573 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---~~---l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl 573 (959)
.|+..|+++++.+.. ++ .-||||-=|||||.+++..++..+.. +.++.+.|||-.-|.+-.+.+.+ .|+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i 340 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-GYQAALMAPTEILAEQHYESLRKWLEPLGI 340 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-CCeeEEeccHHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999874 23 35899999999999988888777775 78999999999999988887765 355
Q ss_pred eEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhccCceeeeecc
Q psy3251 574 KVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKS-LLDNADVICCTCV 652 (959)
Q Consensus 574 ~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~-lL~~a~VI~~T~~ 652 (959)
.|.-+.+.-+. .. ++..... .-..+++|+.|=.
T Consensus 341 ~V~lLtG~~kg---------------------------------------k~-------r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 341 RVALLTGSLKG---------------------------------------KA-------RKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred eEEEeecccch---------------------------------------hH-------HHHHHHHHhCCCCCEEEEcch
Confidence 55444321110 00 0001111 1235788888844
Q ss_pred ccCCcccccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCC----Cceeech-hHHhhcCcHHHHHHHHHcC-
Q psy3251 653 GAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQL----GPVVMCK-KAARAGLSQSLFERLVVLG- 726 (959)
Q Consensus 653 ~a~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL----~Pvv~s~-~a~~~gl~~SLFeRL~~~g- 726 (959)
-..+.. .-...-+|||||=...-.-+-+.-...+.. -|++| -|+=+.- -.....++.|...-+= .|
T Consensus 375 LiQd~V-~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~------~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP-~GR 446 (677)
T COG1200 375 LIQDKV-EFHNLGLVIIDEQHRFGVHQRLALREKGEQ------NPHVLVMTATPIPRTLALTAFGDLDVSIIDELP-PGR 446 (677)
T ss_pred hhhcce-eecceeEEEEeccccccHHHHHHHHHhCCC------CCcEEEEeCCCchHHHHHHHhccccchhhccCC-CCC
Confidence 332221 112567899999766665553333333332 23332 1221110 1123344455443321 13
Q ss_pred CccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHH
Q psy3251 727 IRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASN 806 (959)
Q Consensus 727 ~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~ 806 (959)
-+..+..+....-+++.++..+..-.|+ -++|+..- -++.+ .-|+..
T Consensus 447 kpI~T~~i~~~~~~~v~e~i~~ei~~Gr------------------------QaY~VcPL-IeESE--------~l~l~~ 493 (677)
T COG1200 447 KPITTVVIPHERRPEVYERIREEIAKGR------------------------QAYVVCPL-IEESE--------KLELQA 493 (677)
T ss_pred CceEEEEeccccHHHHHHHHHHHHHcCC------------------------EEEEEecc-ccccc--------cchhhh
Confidence 2334566666778888888776554332 12333321 11111 123445
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcc--ChHHHHHHHHHHHh
Q psy3251 807 VEKITTRFIRCGMKPEQIGVITP--YEGQRAFLVQHMQY 843 (959)
Q Consensus 807 V~~iv~~Ll~~g~~~~~IgIITP--Y~~Q~~~L~~~L~~ 843 (959)
+......|. .-++.-.||++.- -.+++..+.+.++.
T Consensus 494 a~~~~~~L~-~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 494 AEELYEELK-SFLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred HHHHHHHHH-HHcccceeEEEecCCChHHHHHHHHHHHc
Confidence 555555554 2334456999865 34577777666653
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0026 Score=70.09 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc--CCeEEE
Q psy3251 504 DLNRSQVYAVKHAIQ----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT--GLKVVR 577 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~--gl~vvR 577 (959)
.|++-|+.|-..+++ ..-+|||+-.|+|||..+-..|.+.+++ +.+|.+.+|--.-+-+|..||... +.++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-GGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-CCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 699999998777663 5779999999999999998888777776 789999999999999999999864 355555
Q ss_pred eec
Q psy3251 578 VCA 580 (959)
Q Consensus 578 l~~ 580 (959)
+++
T Consensus 176 Lyg 178 (441)
T COG4098 176 LYG 178 (441)
T ss_pred Eec
Confidence 544
No 117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.09 E-value=0.0015 Score=79.47 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=43.3
Q ss_pred HHHHHhc-CCcEEEEcCCCChHHHHHHHH-HHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 512 AVKHAIQ-RPLSLIQGPPGTGKTVTSATI-VYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 512 AV~~al~-~~l~LIqGPPGTGKT~Tia~i-i~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+|..++. ....+|.+|.|||||..-..- +..+....+.+|+|++||..-++++.+.+..
T Consensus 8 ~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 8 NCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH
Confidence 4555554 567899999999999764433 3333333578999999999999999886543
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.09 E-value=0.0068 Score=75.63 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVY-QLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
++.+.|.+++-.++...=.+.+.+.|||||.+.+.-++ .++. +..++|++||..-|.+.++-+..
T Consensus 92 ~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 92 DMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred CCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHH
Confidence 37889999988877665589999999999998765554 3433 44699999999988888877654
No 119
>PF13173 AAA_14: AAA domain
Probab=97.08 E-value=0.0018 Score=62.88 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAV 561 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~Av 561 (959)
+++.+|.||.|+|||+++..++..+. .+.+++.+.......
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHH
Confidence 57889999999999999999987776 356677766654443
No 120
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.04 E-value=0.00079 Score=88.46 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=44.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.-.+|.+++|||||++++..+..++.. .+.+||++|+||.|+.+|.+||.+
T Consensus 11 ~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~ 63 (1141)
T TIGR02784 11 TSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFD 63 (1141)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHH
Confidence 456799999999999999999888765 357899999999999999999864
No 121
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.96 E-value=0.0014 Score=67.53 Aligned_cols=52 Identities=29% Similarity=0.468 Sum_probs=41.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
.++|.||||||||+.+..+++..++. +.++++.+.. ...+++.+++...|.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 36899999999999999999888875 6788888764 4566677777665554
No 122
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.96 E-value=0.0024 Score=61.59 Aligned_cols=55 Identities=31% Similarity=0.539 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD 562 (959)
+.+..++...+. .+..+|.||||||||+++..++..+.. .+.+++.+..+..+..
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEG 61 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhhhh
Confidence 455566666553 467899999999999988888877764 3566777766554443
No 123
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0029 Score=71.52 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=33.1
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeec
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMC 706 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s 706 (959)
+=.+++|||.....-.+ .|+|.+- ...++|||-...=|.+..+
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~vE-~G~iilIGATTENPsF~ln 148 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHVE-NGTIILIGATTENPSFELN 148 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhhc-CCeEEEEeccCCCCCeeec
Confidence 34688999998877665 6888874 4789999999887766543
No 124
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.87 E-value=0.0025 Score=82.74 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=46.7
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+..|..++ .+++++|.|+|||||||-+-.++...-.....+|+++-|-..|+-.+++|+.+
T Consensus 71 ~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 71 KREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHH
Confidence 345566666 47899999999999999876555433211234788889999999999999976
No 125
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.004 Score=68.52 Aligned_cols=54 Identities=31% Similarity=0.477 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 501 NLPDLNRSQVYAVKHAI----QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al----~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.++..|..++..+- .....++.||||||||+.+.++..++++. +.+|+.+.
T Consensus 84 ~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~ 141 (269)
T PRK08181 84 AVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTR 141 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeee
Confidence 34678999999887552 24568999999999999999999888875 66776665
No 126
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.85 E-value=0.009 Score=70.08 Aligned_cols=54 Identities=30% Similarity=0.397 Sum_probs=36.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~v 575 (959)
+.++.|+||+|||||++.++..+.+. +.+|++++ .+ ..|.+++..-....++++
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 57889999999999999999887765 56666554 33 344555554444445443
No 127
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.01 Score=68.50 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=38.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEE-ccc--HHHHHHHHHHHHhcCCeE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVC-APS--NIAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~-ApS--N~AvD~L~erL~~~gl~v 575 (959)
.+.++.||+|+|||||++.++..+... .+.+|+++ +-+ ..|++++.......++++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce
Confidence 467899999999999999999877643 34566554 444 566667555444455554
No 128
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.82 E-value=0.0045 Score=77.14 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 505 LNRSQVYAVKHAIQRP-LSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~-l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.++-|.+++..++... ..+++.|.|||||.+++.-+..+... ...++++++|+..-|+++.+.+.+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 4678999999998754 68889999999998664222222111 2335666889999999999987764
No 129
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.80 E-value=0.0029 Score=77.55 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=50.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
.+++.+|.+|=|||||+.+..-+...+..+..+||++++-..-+.+|+.|+...++.
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~ 104 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLS 104 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCC
Confidence 378899999999999999888887777777899999999999999999999877663
No 130
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.80 E-value=0.012 Score=78.76 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEcCCCC-hHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQR--PLSLIQGPPGT-GKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 505 LN~sQ~~AV~~al~~--~l~LIqGPPGT-GKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~er 567 (959)
.+..|..|+..+++. .+.+++|+.|. |+++++.. +..++...+.+|.++|||+.|+..|.+.
T Consensus 414 ~~~~~~~av~~~~q~~~~~~il~g~~G~aG~g~~l~~-l~~~a~~~G~~V~glAPt~~a~~~L~~~ 478 (1747)
T PRK13709 414 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAE-LVMMAREQGREVQILAADRRSQMNLKQD 478 (1747)
T ss_pred cchhhhHHHHHHhcccCcEEEEEcCCcchHHHHHHHH-HHHHHHhCCcEEEEEeCcHHHHHHHHHh
Confidence 355789999988864 68899988884 66655444 4456666789999999999999998754
No 131
>PRK12377 putative replication protein; Provisional
Probab=96.79 E-value=0.0031 Score=68.54 Aligned_cols=49 Identities=35% Similarity=0.491 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhc--------CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 506 NRSQVYAVKHAIQ--------RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 506 N~sQ~~AV~~al~--------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
++.|..|+..+.. ....+++||||||||+++.+++..+.+. +.+|++++
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~ 136 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVT 136 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEE
Confidence 4567666654331 2467899999999999999999988865 55665543
No 132
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.79 E-value=0.013 Score=67.44 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 509 QVYAVKHAIQRP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 509 Q~~AV~~al~~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
|.+|+..+.... ..+|.+|+|+|||......+. . ...+.++++|++..+++..+++.+.
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l---~-~~~~~~~~~P~~aL~~~~~~~~~~~ 62 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLL---H-GENDTIALYPTNALIEDQTEAIKEF 62 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHH---H-cCCCEEEEeChHHHHHHHHHHHHHH
Confidence 888998888654 689999999999987643332 2 3568899999999999998888753
No 133
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.75 E-value=0.015 Score=74.19 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 504 DLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
.|-+.|..++..++.+ +-.||-=..|.|||..+..++..++..+ ..+|||++|+.-.-.-..|-..+.++...-+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~l~~~i~~~ 231 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFNLRFSLFDE 231 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhCCCeEEEcC
Confidence 5778999999887753 4578889999999999988888877663 469999999855433333333344544332221
Q ss_pred ccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCC-c--
Q psy3251 581 KSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGD-P-- 657 (959)
Q Consensus 581 ~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~-~-- 657 (959)
..... +... + ..-....++++++...+.. .
T Consensus 232 ~~~~~----------------------------~~~~-~------------------~~pf~~~~~vI~S~~~l~~~~~~ 264 (956)
T PRK04914 232 ERYAE----------------------------AQHD-A------------------DNPFETEQLVICSLDFLRRNKQR 264 (956)
T ss_pred cchhh----------------------------hccc-c------------------cCccccCcEEEEEHHHhhhCHHH
Confidence 10000 0000 0 0012235666666544332 1
Q ss_pred --ccccCCcCEEEEECCCCCC----hhh----hHhhhhhc-CCeEEEEccCCCCCce
Q psy3251 658 --RLLKIKFHSILIDESMQAT----EPE----CMVPVILG-AKQLILVGDHCQLGPV 703 (959)
Q Consensus 658 --~l~~~~fd~VIIDEAsQ~~----Epe----~Lipl~~~-~krvVLVGD~~QL~Pv 703 (959)
.+....||+||||||..+. .|. .+..+... ...+.|-|=|.|.++.
T Consensus 265 ~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~ 321 (956)
T PRK04914 265 LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQE 321 (956)
T ss_pred HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcH
Confidence 2345589999999998874 222 23333322 3578899999997664
No 134
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=96.75 E-value=0.003 Score=76.06 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=39.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
...+|.|-+|||||+.+..+...+ +.+|+++|..|+.|+..+|.+
T Consensus 72 s~~~itG~AGsGKst~i~~l~~~l------~cvitg~T~vAAqN~~~~L~~ 116 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQTLNENL------DCVITGATRVAAQNLSAKLSR 116 (828)
T ss_pred EEEEEecCCCCChHHHHHHHHHhc------CEEEEcchHHHHHhhhccccc
Confidence 347999999999999998887554 789999999999999988873
No 135
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.0039 Score=67.59 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhc------C--CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 505 LNRSQVYAVKHAIQ------R--PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 505 LN~sQ~~AV~~al~------~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.++.|+.|+..+.. . ...++.||||||||+++.+++.++.+. +.+|++++
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it 134 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIIT 134 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 35677777766542 1 467999999999999999999998875 66787774
No 136
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.73 E-value=0.0069 Score=74.83 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEE
Q psy3251 504 DLNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVR 577 (959)
Q Consensus 504 ~LN~sQ~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvR 577 (959)
++-+.|.+++.... ..+ .+++-+.|||||.|.+..++.-. ..+..++|++||..-|.+.++.+.. .|+++..
T Consensus 68 glrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~a-L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~ 144 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNA-LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSL 144 (762)
T ss_pred CCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHh-hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 34455555555433 344 69999999999999766553322 2466899999999998888887743 4666543
No 137
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.69 E-value=0.011 Score=72.09 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEee
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRVC 579 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl~ 579 (959)
..+-|..++-.++... +.+...|+|||.+.+..++.... .+..++|+|||..-|.+.++-+.. .|+++.-+.
T Consensus 104 p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~ 179 (656)
T PRK12898 104 HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVV 179 (656)
T ss_pred CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 4578999988887666 88999999999998766654443 367899999999999888887754 366655443
No 138
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.0092 Score=66.43 Aligned_cols=57 Identities=33% Similarity=0.420 Sum_probs=45.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-ccc--HHHHHHHHHHHHhcCCeEEEe
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APS--NIAVDQLTEKIHRTGLKVVRV 578 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApS--N~AvD~L~erL~~~gl~vvRl 578 (959)
+.|+.|..|+|||||++.+++.+.++ +.+|++. +-| -.|+++|..--.+.|.+++.-
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 46899999999999999999888876 6666655 444 556788877777788888874
No 139
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.67 E-value=0.0042 Score=80.45 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=44.7
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.++.|..++ .+++++|.|++||||||.+-.++..+-.....+|.++-|-..|+-.+++|+..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~ 140 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAE 140 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHH
Confidence 334555555 57899999999999999765554433211224677788999999999999875
No 140
>KOG0989|consensus
Probab=96.66 E-value=0.0016 Score=71.07 Aligned_cols=27 Identities=44% Similarity=0.595 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
-|..|.+||||||||+|+.+.+.+|.-
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 378999999999999999998888753
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.64 E-value=0.02 Score=71.46 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=45.2
Q ss_pred HHHHH---HHHHHhcC------CcEEEEcCCCChHHHH-HHHHHHHHHHccCCCEEEEcccHHHHHHHHHH
Q psy3251 507 RSQVY---AVKHAIQR------PLSLIQGPPGTGKTVT-SATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 507 ~sQ~~---AV~~al~~------~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~~~rILV~ApSN~AvD~L~er 567 (959)
+.|.+ +|..++.. ...+|.+|.|||||.- ++-.++ .+...+++|+|-|.|..--++|..|
T Consensus 28 ~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~-~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 28 AGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIP-IARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred HHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHH-HHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 46776 77777765 6789999999999975 333332 2333478999999999999999765
No 142
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0042 Score=74.46 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=25.4
Q ss_pred HHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 511 YAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 511 ~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+++..++.. ...|++||||||||+++..++..|.-
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344555532 34699999999999998888877653
No 143
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.0045 Score=64.95 Aligned_cols=57 Identities=30% Similarity=0.348 Sum_probs=42.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-ccc--HHHHHHHHHHHHhcCCeEEEe
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APS--NIAVDQLTEKIHRTGLKVVRV 578 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApS--N~AvD~L~erL~~~gl~vvRl 578 (959)
+.++.||+|+|||||++.+++++..+ +.+|.++ +-+ ..|+++|..--...++++...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchh
Confidence 46789999999999999999999887 6666554 444 478888876666667776553
No 144
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.004 Score=77.58 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
...|+.||||||||+++..++..|.-
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccC
Confidence 34689999999999999888877653
No 145
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.029 Score=65.48 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=37.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccH--HHHHHHHHHHHhcCCeEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSN--IAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN--~AvD~L~erL~~~gl~vv 576 (959)
.+.++.||+|+|||||++.++..+.+. +.+|+++ +-+. .|++++..--...+++++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 357899999999999999999877655 5676655 4443 566666433333444443
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.53 E-value=0.0019 Score=61.63 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~ 563 (959)
.+..+|.||||||||+++..++..+... ...++.++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC
Confidence 4578999999999999999998766543 2356666665544433
No 147
>PRK06526 transposase; Provisional
Probab=96.51 E-value=0.0056 Score=66.89 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHh---cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 502 LPDLNRSQVYAVKHAI---QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al---~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.++..|...+...- .....+|.||||||||+++.++...+++. +.+|+..
T Consensus 78 ~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f~ 132 (254)
T PRK06526 78 QRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLFA 132 (254)
T ss_pred CCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhhh
Confidence 3567887776553321 24568999999999999999999888875 5666553
No 148
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0081 Score=75.06 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+..|..++ .+++.+|.||||+||||-+-..++..--..+++|.++=|-..||-.+++|+..
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAe 116 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAE 116 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHH
Confidence 445555555 47899999999999999887777655434466899999999999999999986
No 149
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.0053 Score=74.21 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=29.7
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEc-cCCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL---GAKQLILVG-DHCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVG-D~~QL~Pvv~s~ 707 (959)
+|.++||||+.+++... .|+..+- +...+||+. |+.+|+|++.|.
T Consensus 124 r~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 124 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred CceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 68999999999988543 3444332 223566655 455688887654
No 150
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0059 Score=71.85 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|+.||||||||+++..++..+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3699999999999999888876653
No 151
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.0076 Score=73.85 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..|+.||||||||+++..++..|.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999888887665
No 152
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.007 Score=73.96 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCcCEEEEECCCCCChhh--hHhhhhh-cCCeEEEEc---cCCCCCceeech
Q psy3251 662 IKFHSILIDESMQATEPE--CMVPVIL-GAKQLILVG---DHCQLGPVVMCK 707 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe--~Lipl~~-~~krvVLVG---D~~QL~Pvv~s~ 707 (959)
.++.++|||||.+++... .|+..+- ...+++++. |+..|+|++.++
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 378999999999988643 4555442 334444444 666677776653
No 153
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.38 E-value=0.0059 Score=65.24 Aligned_cols=55 Identities=31% Similarity=0.531 Sum_probs=40.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
...+||.||||||||+.+...++.-+++.+.+++.++..... +.+.+.+.+.|.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~-~~l~~~~~s~g~d 73 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP-EELIENMKSFGWD 73 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H-HHHHHHHHTTTS-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH-HHHHHHHHHcCCc
Confidence 467899999999999999998887776546788888875444 7777877776654
No 154
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.33 E-value=0.02 Score=71.23 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HHHHHHHcc-C-----CCEEEEcccHHHHHHHHHHHHh
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQT-G-----SPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~-~-----~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++-|..|+..+....-+||.+|-|||||-++.. ++..|++.+ + -.+|.++|=.+-...+..+|..
T Consensus 21 ~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 468999999999999889999999999999998644 555666662 2 2489999988888888888754
No 155
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0059 Score=66.73 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHh-------cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 505 LNRSQVYAVKHAI-------QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 505 LN~sQ~~AV~~al-------~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
.+..+++|+..+. +..-.++.||||||||+.++++...+++ .+.+|++++.
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~ 141 (254)
T COG1484 84 QPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITA 141 (254)
T ss_pred CcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEH
Confidence 3445666555543 2346789999999999999999999994 4667766654
No 156
>COG4889 Predicted helicase [General function prediction only]
Probab=96.31 E-value=0.028 Score=68.47 Aligned_cols=62 Identities=29% Similarity=0.235 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHH
Q psy3251 503 PDLNRSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL 568 (959)
..+-+.|+.|+..++. .+=-||-+ +|||||.|+..+.-.|.. .+||.++||-....+-...-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHH
Confidence 4577899999999874 23346655 899999999999888875 69999999987766554433
No 157
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.30 E-value=0.011 Score=69.32 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=23.8
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCC
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHC 698 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~ 698 (959)
...+|||||+..++... .|++... ...++++|-..
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh-cCcEEEEEeCC
Confidence 46789999998877543 4555543 35677887643
No 158
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.29 E-value=0.01 Score=65.54 Aligned_cols=57 Identities=39% Similarity=0.528 Sum_probs=41.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHHHHHHhcCCeEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~erL~~~gl~vvR 577 (959)
.+.++.||||+|||||++.++..+.+. +.+|++++ +...|.+++.......++.++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~ 132 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK 132 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe
Confidence 356677999999999999999888655 56777664 3345667777666666766553
No 159
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.27 E-value=0.026 Score=71.53 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=45.5
Q ss_pred CCCHHHHH---HHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHH
Q psy3251 504 DLNRSQVY---AVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTE 566 (959)
Q Consensus 504 ~LN~sQ~~---AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~e 566 (959)
+.-+.|.+ +|..++. ....+|++|+|||||..-..-+ +....+.+++|.|||..-++++..
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~--l~~~~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPL--LAQSDQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHH--HHhcCCCcEEEEeCcHHHHHHHHH
Confidence 34567887 7777776 4677899999999998743322 222246799999999999999953
No 160
>PRK04195 replication factor C large subunit; Provisional
Probab=96.26 E-value=0.02 Score=68.44 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQ-------RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 505 LN~sQ~~AV~~al~-------~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++.+.+.+...+. .+..||.||||||||+++..++..+
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35555555555442 4678999999999999988776544
No 161
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.22 E-value=0.038 Score=65.23 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=28.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
..+|.||||||||+.+.++...+.+. ++.+|+.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 47999999999999999999888765 3456776653
No 162
>KOG0744|consensus
Probab=96.20 E-value=0.003 Score=69.38 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+++.|++||||||||+...+++..|.-
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 789999999999999999888877754
No 163
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.20 E-value=0.0041 Score=59.97 Aligned_cols=51 Identities=27% Similarity=0.458 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~ 569 (959)
+.+.+|.||||+|||+++..++..+... ...-+.+.++.......+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 59 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEIL 59 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 5678999999999999999999887653 12224444555444555555554
No 164
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.18 E-value=0.044 Score=70.06 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~ 579 (959)
.+.+-|.+||..++...-+++..|.|+|||.+-..-+ |+. +..+||++|+...+..-..++...+++...+.
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPA--L~~--~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~ 531 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPA--LIC--PGITLVISPLVSLIQDQIMNLLQANIPAASLS 531 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHH--HHc--CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5778999999999998889999999999997643222 222 46799999999998766777777777765553
No 165
>KOG2108|consensus
Probab=96.17 E-value=0.00042 Score=84.15 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=40.6
Q ss_pred eEEeecccCCCccccEEEEEccccCCCCCcc------------CC-CCcCceeecchhhcccEEEE
Q psy3251 855 IEVASVDAFQGREKDLIIMSCVRSNDHQGIG------------FL-NDPRRLNVALTRAKYGIIVI 907 (959)
Q Consensus 855 V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iG------------Fl-~d~rRLNVAlTRAK~~LiIv 907 (959)
+..+|+|..+|.|+|.|-+.+-+....+..- |. ..++.+|||+||||.++|.-
T Consensus 675 ~~l~Tih~akglefd~v~~~n~~~~~~~s~~~~~r~~~~r~~t~~~~e~n~lyV~vtRakkrl~~~ 740 (853)
T KOG2108|consen 675 VILGTIHQAKGLEFDNVHLQNDFVKVFGSVSNFERLPSFRVETYNEDEWNFLYVAVTRAKKRLIMC 740 (853)
T ss_pred hhhHHHHhccCcccceeecccCcccccccccchhhcchhhhhhhhhhhhhheeeeecchhhhcccc
Confidence 6789999999999999999887665432221 11 23588999999999987764
No 166
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.16 E-value=0.071 Score=64.71 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.-.+.+++-..+.+..+++..|=|.|||+++..++..++...+.+|+++||....+.++.+++..
T Consensus 174 ~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 174 TLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred hHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 34577788888889999999999999999998777777653468999999999999999888754
No 167
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.013 Score=71.08 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..|+.||||||||+++..++..|.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999988887765
No 168
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.0087 Score=72.58 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
...|+.||||||||+++..++..|.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3569999999999999988887764
No 169
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.049 Score=55.16 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc----HHHHHHHHHHHHhcCCeEEEeec
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS----NIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS----N~AvD~L~erL~~~gl~vvRl~~ 580 (959)
.++..|.+|+|+|||+.+..++...+.+ +.+|+++=|- ...-.++.+++ .++++.|++.
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l--~~v~~~~~g~ 64 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERL--PNIEIHRMGR 64 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC--CCcEEEECCC
Confidence 4678899999999999999999888876 7889884332 23344455555 2678888765
No 170
>KOG0330|consensus
Probab=96.11 E-value=0.023 Score=63.82 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHhc----CCeEEE
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHRT----GLKVVR 577 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~~----gl~vvR 577 (959)
..+.-|++||=.++...-.+.-+--|+|||-+ +.-++.+|+..+ ....||+|||..-+-++++-.... |+++.-
T Consensus 83 ~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAV 162 (476)
T ss_pred CCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEE
Confidence 45778999999999999999999999999987 555777888763 346999999999999999887664 444332
Q ss_pred e-ecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCC
Q psy3251 578 V-CAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGD 656 (959)
Q Consensus 578 l-~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~ 656 (959)
+ |+-. .. .....+.+..+||++|.-...+
T Consensus 163 lvGG~~---------m~-----------------------------------------~q~~~L~kkPhilVaTPGrL~d 192 (476)
T KOG0330|consen 163 LVGGMD---------MM-----------------------------------------LQANQLSKKPHILVATPGRLWD 192 (476)
T ss_pred EecCch---------HH-----------------------------------------HHHHHhhcCCCEEEeCcHHHHH
Confidence 2 2210 00 0001234567788888654332
Q ss_pred ccccc-----CCcCEEEEECCCCCChhh------hHhhhhhcCCeEEEEccC
Q psy3251 657 PRLLK-----IKFHSILIDESMQATEPE------CMVPVILGAKQLILVGDH 697 (959)
Q Consensus 657 ~~l~~-----~~fd~VIIDEAsQ~~Epe------~Lipl~~~~krvVLVGD~ 697 (959)
..... ....++++|||-.+...+ .+++.....++.+|++-.
T Consensus 193 hl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsAT 244 (476)
T KOG0330|consen 193 HLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSAT 244 (476)
T ss_pred HHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEee
Confidence 22111 145789999997665543 344444556788888654
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=96.11 E-value=0.0095 Score=64.26 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+++|.|+||+|||+.+..+++..+++ +.++++.+.--. .+++.+|+...|++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes-~~~i~~R~~s~g~d 117 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT-EQDVRDRLRALGAD 117 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC-HHHHHHHHHHcCCC
Confidence 5689999999999999999999888876 778888876554 57888888776544
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.10 E-value=0.004 Score=59.79 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.||.||||||||+++..++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 4799999999999998888665
No 173
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.044 Score=57.98 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHc----cCCCEEEEcccH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQ----TGSPVLVCAPSN 558 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~----~~~rILV~ApSN 558 (959)
+||.||||+||||.+..++..+... .+.||.++--++
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence 7999999999999999988766543 455666664443
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.08 E-value=0.014 Score=65.77 Aligned_cols=57 Identities=32% Similarity=0.413 Sum_probs=41.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~vvR 577 (959)
.+.++.||||+|||||++.++..+... +.+|++++ .+ ..|++++.......++.++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~ 174 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA 174 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceEEE
Confidence 357789999999999999999887754 56777664 44 34667776555556666543
No 175
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.014 Score=70.90 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
...|+.||||||||+++..++..+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578899999999999988887665
No 176
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.07 E-value=0.084 Score=54.19 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHH----HHHHHHHHHhcCCeEEEeec
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIA----VDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~A----vD~L~erL~~~gl~vvRl~~ 580 (959)
.++..|.+|+|.|||+.+..++...+.. +.+|+++=|-... =..+.+++ ++.+.+.+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~---~~~~~~~g~ 66 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH---GVEFQVMGT 66 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc---CcEEEECCC
Confidence 5788999999999999999999888876 7899888443322 12233333 566666553
No 177
>PRK08116 hypothetical protein; Validated
Probab=96.06 E-value=0.019 Score=63.22 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=28.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+++||||||||+++.+++..+.+. +.++++..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~ 149 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN 149 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 47899999999999999999999876 56676665
No 178
>PRK10867 signal recognition particle protein; Provisional
Probab=96.05 E-value=0.015 Score=68.14 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=40.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccH--HHHHHHHHHHHhcCCeEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSN--IAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN--~AvD~L~erL~~~gl~vvR 577 (959)
+.++.||||+|||||++.++..+.+..+.+|+++ +-+. .|++++.......+++++.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 5688999999999999999998887645666554 5444 3456665544556666553
No 179
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.04 E-value=0.019 Score=62.07 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 504 DLNRSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
.-|.....++..... .+..+|+||||||||+.+..+..++... +.+++.+..
T Consensus 27 ~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~ 81 (235)
T PRK08084 27 GDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPL 81 (235)
T ss_pred CccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEH
Confidence 456666666666542 3578999999999999998888777654 567777655
No 180
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.01 E-value=0.01 Score=64.17 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+++|.||||||||+.+..+++.-++. +.++++++.. ...+++.+++.+.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~e-e~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALE-EHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEee-CCHHHHHHHHHHhCCC
Confidence 4578999999999999999988877754 7889999864 4666788877766554
No 181
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.084 Score=62.52 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=27.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
+..+|.||||||||+++.++...+... ++.+|+.++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 457899999999999998888776653 4556665443
No 182
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.00 E-value=0.011 Score=61.16 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..-.++.||||||||+++++++..++.. +.+++.+.. .+|.++|.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~-----~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITA-----SDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEH-----HHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeec-----Cceecccc
Confidence 3457899999999999999999999884 667777653 34555544
No 183
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.024 Score=68.44 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 509 QVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 509 Q~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
-.+++..++.. ...|+.||||+|||+++..++..|.
T Consensus 24 v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 24 VVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444444432 2468999999999998888776664
No 184
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.97 E-value=0.0079 Score=63.17 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+++.+|.||+|+||||++..++..+....+.+|+..-
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 4788999999999999998888777654344555543
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=95.96 E-value=0.022 Score=61.24 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
++..+|+||||||||+.+.+++..+.+. +.++..+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEee
Confidence 5677999999999999999999888775 44554444
No 186
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.95 E-value=0.075 Score=68.29 Aligned_cols=149 Identities=19% Similarity=0.284 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHhc---CC-cEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc--CCeE
Q psy3251 504 DLNRSQVYAVKHAIQ---RP-LSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT--GLKV 575 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---~~-l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~--gl~v 575 (959)
.|=+.|..++.-.+. ++ -.++.=..|.|||..+..++..+... ..+++||++|... +.+-..-+.+. .+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~Sl-L~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKST-LGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHH-HHHHHHHHHHHCCCCce
Confidence 577889999987753 33 35666789999999988888777653 3468999999755 45555555543 2334
Q ss_pred EEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccC
Q psy3251 576 VRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAG 655 (959)
Q Consensus 576 vRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~ 655 (959)
+.+.+...+ + ..+. . ........+|+++|-..+.
T Consensus 248 ~~~~G~~~e---------------R--------~~~~---------------------~--~~~~~~~~dVvITSYe~l~ 281 (1033)
T PLN03142 248 VKFHGNPEE---------------R--------AHQR---------------------E--ELLVAGKFDVCVTSFEMAI 281 (1033)
T ss_pred EEEeCCHHH---------------H--------HHHH---------------------H--HHhcccCCCcceecHHHHH
Confidence 433321100 0 0000 0 0001124566666654432
Q ss_pred C--cccccCCcCEEEEECCCCCChhhhHhh----hhhcCCeEEEEccCCC
Q psy3251 656 D--PRLLKIKFHSILIDESMQATEPECMVP----VILGAKQLILVGDHCQ 699 (959)
Q Consensus 656 ~--~~l~~~~fd~VIIDEAsQ~~Epe~Lip----l~~~~krvVLVGD~~Q 699 (959)
. ..+....+++||||||..+--+.+.+. ......+++|.|=|-|
T Consensus 282 ~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlq 331 (1033)
T PLN03142 282 KEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 331 (1033)
T ss_pred HHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCC
Confidence 2 235567899999999988877654222 1124568999999988
No 187
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.88 E-value=0.012 Score=64.60 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.+.|.+++..++. .++.+|.||+|+||||++.+++..+.. +..+|+.+
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iiti 114 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITV 114 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEE
Confidence 367789988888774 578999999999999999888876643 23455554
No 188
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.86 E-value=0.059 Score=67.33 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEE
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVR 577 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvR 577 (959)
.+-|..+....+ .+- +.+...|+|||.+++..++.... .+.+++|+|||..-|.+-.+.+.. .|+++.-
T Consensus 80 ~~vQl~~~~~l~-~G~-Iaem~TGeGKTL~a~lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 80 YDVQLIGALVLH-EGN-IAEMQTGEGKTLTATMPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred chHHHHhHHHHc-CCc-eeeecCCCcchHHHHHHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 345665554333 333 89999999999987665542222 478999999999999888887654 3555443
No 189
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.86 E-value=0.013 Score=63.01 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.||||||||+++..+++.+++. +.+++.++.... .+++.+.+.+.|.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~-~~~~~~~~~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLT-TTEFIKQMMSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCC-HHHHHHHHHHhCC
Confidence 5689999999999999999988888775 678888875543 4555555555444
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.85 E-value=0.025 Score=64.27 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCcchhhcccCCCCCCC--CCCCCCCCHHHHHHHHHHh---c-----CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 473 AYIYHRLLGHNVDEVLFRCHLPKHFS--APNLPDLNRSQVYAVKHAI---Q-----RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 473 ~~i~~~llg~~~~~~~~~~~~p~~~~--~~~~~~LN~sQ~~AV~~al---~-----~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+++..+..+..+++......-++|. ...+.++.+...+.|..+. . +.+.++.||||||||+++..++..
T Consensus 22 qr~~dmI~~~g~~~~~~~~~~~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 22 QRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHhccCcEEeccCCcceeeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555544444443222222222 2234455555555444321 1 467899999999999998888766
Q ss_pred HHH
Q psy3251 543 LVK 545 (959)
Q Consensus 543 Ll~ 545 (959)
|-.
T Consensus 102 l~~ 104 (361)
T smart00763 102 LEE 104 (361)
T ss_pred Hhh
Confidence 643
No 191
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.84 E-value=0.012 Score=64.40 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
..+++|.||||||||+.+..++++.+++ +.+++.++.-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 5679999999999999999998888776 77898888753
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=95.83 E-value=0.019 Score=62.96 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHH--h-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 502 LPDLNRSQVYAVKHA--I-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~a--l-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+.+|..|...+... + .....+|.||||||||+.+.++...+... +.+|+.+.
T Consensus 82 ~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~ 137 (259)
T PRK09183 82 ATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTT 137 (259)
T ss_pred CCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 356788887777543 1 24568899999999999999987666654 66777654
No 193
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.81 E-value=0.015 Score=62.00 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+++|.|+||+|||+.+..+++..+++ +.+++.++... ..+++.+++...+.+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~-~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE-REERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC-CHHHHHHHHHHcCCC
Confidence 4578999999999999999998887776 78899888765 678888888776654
No 194
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.80 E-value=0.02 Score=58.44 Aligned_cols=55 Identities=35% Similarity=0.475 Sum_probs=36.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-ccH--HHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PSN--IAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pSN--~AvD~L~erL~~~gl~vv 576 (959)
+.++.||||+|||+++..++..+.+. +.+|+++. .+. .+.+++.....+.++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~ 59 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHHHHHHhcccCCeEEE
Confidence 46889999999999999999888776 56776654 333 334444333333454443
No 195
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=95.75 E-value=0.061 Score=68.27 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
|=..|.+|.+.+....-++|+-|.|||||-. +.-++.++++.+..+-|++-|||+-+..=.+|+.+.
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~ 138 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLREL 138 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHH
Confidence 5568999999998888999999999999987 667778888888889999999999998888888753
No 196
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.74 E-value=0.024 Score=66.40 Aligned_cols=57 Identities=32% Similarity=0.456 Sum_probs=40.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccHH--HHHHHHHHHHhcCCeEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSNI--AVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN~--AvD~L~erL~~~gl~vvR 577 (959)
+.++.||||+|||||++.++..+....+.+|+++ +-+.. |.+++.......++++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 5789999999999999999988764445666554 55443 456665554556666554
No 197
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.74 E-value=0.03 Score=59.55 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHh---cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 505 LNRSQVYAVKHAI---QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 505 LN~sQ~~AV~~al---~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
-|..-.++++..+ ..+..+|.||||||||+++..++..+... +.+++.+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-~~~~~~i~~ 74 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-GKSAIYLPL 74 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEeH
Confidence 3444445555543 24678999999999999999888776654 445555443
No 198
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.74 E-value=0.066 Score=66.07 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEe
Q psy3251 508 SQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRV 578 (959)
Q Consensus 508 sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl 578 (959)
-|..+.... ..+. +.+.+.|+|||.+++..++. ....+.+++|+|||..-|.+.++.+.. .|+++.-+
T Consensus 60 vQlig~~~l-~~G~-Iaem~TGeGKTLva~lpa~l-~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i 131 (745)
T TIGR00963 60 VQLIGGIAL-HKGK-IAEMKTGEGKTLTATLPAYL-NALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLI 131 (745)
T ss_pred hHHhhhhhh-cCCc-eeeecCCCccHHHHHHHHHH-HHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 455544433 3343 88999999999876554432 222367899999999999998887654 35554433
No 199
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.73 E-value=0.011 Score=64.68 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=28.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEE
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVL 552 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rIL 552 (959)
.+++.||.||-|||||||++++|-++-+.....||
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIl 158 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHIL 158 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceE
Confidence 47999999999999999999999887765444443
No 200
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.73 E-value=0.015 Score=57.56 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=32.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD 562 (959)
+++|.||||||||+++..++..+... +.+|++........+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHH
Confidence 36899999999999999999888764 677888776554443
No 201
>KOG0987|consensus
Probab=95.73 E-value=0.025 Score=68.44 Aligned_cols=60 Identities=30% Similarity=0.242 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHH----HHhc--CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHH
Q psy3251 503 PDLNRSQVYAVK----HAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQL 564 (959)
Q Consensus 503 ~~LN~sQ~~AV~----~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L 564 (959)
..||++|+.... .+.. .++.. .|++|||||+..-+++..+... +.+++.+|.|+.|+--+
T Consensus 116 ~~l~~eqk~v~d~~~~~v~~~~g~~ff-~g~~gtgKt~l~~t~~~~~~~~-g~~~~~v~~s~ia~~~l 181 (540)
T KOG0987|consen 116 KKLTPEQKRVYDAILEAVENNLGGVFF-YGFGGTGKTYLLKTLIAALRSR-GKIVLNVASSGIAALLL 181 (540)
T ss_pred hhcCHHHHHHHHHHHHHHhccccceee-eccCCccceeeHHHHHHHHhcC-CceEEEeeecchhhhhc
Confidence 358999987655 2222 24455 8999999999999999888776 78888889988876543
No 202
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.027 Score=68.91 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|+.||||+|||+++..++..|.-
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4699999999999999888877653
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.024 Score=65.04 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccH---HHHHHHHHHHHhcCCeE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSN---IAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN---~AvD~L~erL~~~gl~v 575 (959)
..+.++.||+|+|||||++.++..+... +..+|.+++.-. .|+++|..--...++++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 4578999999999999999999887654 335776665332 36666654433445544
No 204
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.70 E-value=0.03 Score=59.89 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 504 DLNRSQVYAVKHAIQ----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.-|.....+++.... .+..+|.||||||||+.+..+..++... +.++.++
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i 76 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GRNARYL 76 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEE
Confidence 456666666666533 3578999999999999999888777654 3444443
No 205
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.031 Score=66.46 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=20.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..|++||||||||+++..++..|.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHc
Confidence 589999999999999887776654
No 206
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.64 E-value=0.024 Score=57.89 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHHHHHHh------cCCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 507 RSQVYAVKHAI------QRPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 507 ~sQ~~AV~~al------~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
++|.+.+...+ ..+..+|.|+||+|||+++.++...+...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35666777766 14678999999999999999988877776
No 207
>PRK08727 hypothetical protein; Validated
Probab=95.63 E-value=0.063 Score=57.91 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+..+|.||+|||||+.+.++...+.+. +.++..+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEe
Confidence 468999999999999999998887765 56777665
No 208
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.026 Score=62.67 Aligned_cols=46 Identities=30% Similarity=0.418 Sum_probs=34.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccH---HHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSN---IAVDQLTE 566 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN---~AvD~L~e 566 (959)
+.+|.||.|+|||||++.++..+... ++.+|.+++.-. .|++++..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~ 245 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKT 245 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHH
Confidence 67889999999999999999888765 446777665332 34555544
No 209
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.59 E-value=0.023 Score=64.07 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEE
Q psy3251 505 LNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLV 553 (959)
Q Consensus 505 LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV 553 (959)
+++.|...+..++. +...+|.||+||||||++.+++..+... +..||++
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivt 179 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVI 179 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEE
Confidence 56678877777775 4567899999999999999988777654 3345554
No 210
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.58 E-value=0.023 Score=64.11 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEccc
Q psy3251 505 LNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPS 557 (959)
Q Consensus 505 LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApS 557 (959)
+++.|.+.+..++. +...+|.||+||||||++.+++..+... +..+|+++-.+
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 55678888877664 5678999999999999999888776543 34566655443
No 211
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.56 E-value=0.038 Score=69.21 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=36.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+.+.+.|+|||.+.+..++.-+. .+..|+|+|||..-|.+.++.+..
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHH
Confidence 56789999999987665553332 356899999999999888887765
No 212
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.56 E-value=0.021 Score=61.47 Aligned_cols=55 Identities=33% Similarity=0.506 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~v 575 (959)
..+++|.||||||||+.+..+++..+++ +.+++.++.... .+.+.+++.+.++++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~-~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT-SKSYLKQMESVKIDI 79 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC-HHHHHHHHHHCCCCh
Confidence 5678999999999999999998887765 788999988754 467777777766553
No 213
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.026 Score=69.25 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+..|+.||||||||+++..++..|.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 45699999999999999888877754
No 214
>PRK04328 hypothetical protein; Provisional
Probab=95.56 E-value=0.022 Score=62.03 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+++|.||||||||+.+..+++.-++. +.++++++.....- .+.+++.+.|.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~-~i~~~~~~~g~d 76 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPV-QVRRNMRQFGWD 76 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHH-HHHHHHHHcCCC
Confidence 5678999999999999999998887765 78888888655444 477776666553
No 215
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.55 E-value=0.023 Score=70.71 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=25.2
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCC
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQ 699 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~Q 699 (959)
...++||||+..++... .|++... ..+++++|+...
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~lE-~g~IiLI~aTTe 146 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWVE-NGTITLIGATTE 146 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHhc-CceEEEEEecCC
Confidence 46789999998876543 4666543 467899987643
No 216
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.53 E-value=0.021 Score=62.65 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|.||||+|||+++..++.+++...+.+|++.+.-. ..++++.|+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHH
Confidence 5689999999999999999999888776578899998755 45667777654
No 217
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.51 E-value=0.022 Score=58.96 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc---------cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ---------TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---------~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|.||||+|||+.+..++.+++.. .+.+||++..-+. ...+.+|+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 5789999999999999999999998852 3568999988776 5566777764
No 218
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.039 Score=68.07 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=26.3
Q ss_pred HHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 509 QVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 509 Q~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..+.+..++.. ...|+.||||||||+++..++..|.-
T Consensus 26 ~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 26 IVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34445555532 34689999999999999888866653
No 219
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.48 E-value=0.021 Score=68.32 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
...+||.||||||||+.+...+++-+.+.+.++|.++.- ...+++.+...+.|.+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWD 75 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCC
Confidence 567899999999999999999887666557899999885 6667788877776654
No 220
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.043 Score=65.89 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|+.||||||||+++..++..+.-
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4699999999999999988887764
No 221
>PRK06851 hypothetical protein; Provisional
Probab=95.47 E-value=0.011 Score=67.54 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCC--EEEEcccHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP--VLVCAPSNIAVDQLT 565 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~r--ILV~ApSN~AvD~L~ 565 (959)
..+.+|.||||||||+++..++..+.+. +.. .+.|+..|.++|-+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~-g~~Ve~~~~~~d~~slDgvi 77 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEK-GYDVEFLHCSSDNDSLDGVI 77 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEcCCCCCceeeEE
Confidence 6789999999999999999999888775 344 788999999998874
No 222
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.025 Score=69.06 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|++||+|||||+++..++..|.-
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4699999999999999888877753
No 223
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.43 E-value=0.012 Score=55.98 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|||||||||++..++..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999988887654
No 224
>PLN03025 replication factor C subunit; Provisional
Probab=95.40 E-value=0.019 Score=64.90 Aligned_cols=40 Identities=30% Similarity=0.534 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 506 N~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
|+.....++..+.+ +..+++||||||||+++..++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34455555554432 56799999999999999998877753
No 225
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.40 E-value=0.027 Score=63.02 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 505 LNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 505 LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
+++.|...+..++. +...+|.||+|+||||++.+++..+... +..+|+++-.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 55667777777665 5678999999999999999988766653 3466766543
No 226
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus.
Probab=95.39 E-value=0.19 Score=65.71 Aligned_cols=155 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeechhHHhhc-Cc---HHHHHHHHHcCCccEEecccc
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMCKKAARAG-LS---QSLFERLVVLGIRPFRLEVQY 736 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~g-l~---~SLFeRL~~~g~~~~~L~~qY 736 (959)
+-..|+|||+++.+..+ .+-.|...+++|.+++|..|..+. .. ....+ +. ..+..-....+.+...+..+|
T Consensus 185 ~~~~i~IDgF~~FTp~Q~~vIe~L~~~~~~v~v~l~~D~~~~~-~~--~~~~~LF~~s~~~L~~la~~~~i~v~~~~~~~ 261 (1076)
T TIGR02774 185 KNTVLVIDGFTRFSAEEEALVSLLHGKGVEIIIGAYASQKAYK-SS--FSEGNLYQASVKFLHDLAQKYQTKAEFISSTH 261 (1076)
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHhCCEEEEEEEcCccccc-cC--CCcccchHHHHHHHHHHHHHcCCCcccCcccc
Confidence 45789999999999777 344555678999999998884420 00 00000 00 222222223366666666889
Q ss_pred CCchhHhhhhhhhhccCCcccccccccccccCCCCCC--CCC-CCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHH
Q psy3251 737 RMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPW--PVP-DKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTR 813 (959)
Q Consensus 737 Rmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~--p~~-~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~ 813 (959)
|.+|+|..+.+.++-...... .++ +.. ...+.++...+ -..|++.|.+.+.+
T Consensus 262 R~~~~L~~Le~~~~~~~~~~~-------------~~~~~~~~~~~~I~i~~a~n------------~~~Eve~va~~I~~ 316 (1076)
T TIGR02774 262 ESKDSFDKLSRLLEASHDFSE-------------LALDLDDKDKDNLTIWSCLT------------QKEEVEHVARSIRQ 316 (1076)
T ss_pred ccCHHHHHHHHHHhhcccCCc-------------ccccCCCCCCCceEEEEcCC------------HHHHHHHHHHHHHH
Confidence 999999998774332100000 001 000 01222222211 35799999999999
Q ss_pred HHHcCCCCCcEEEEccChHH-HHHHHHHHHhcC
Q psy3251 814 FIRCGMKPEQIGVITPYEGQ-RAFLVQHMQYQG 845 (959)
Q Consensus 814 Ll~~g~~~~~IgIITPY~~Q-~~~L~~~L~~~~ 845 (959)
|++.|++++||+|+++-..+ ...|...+...+
T Consensus 317 lv~~g~ry~DIaVl~rd~~~Y~~~i~~iF~~~~ 349 (1076)
T TIGR02774 317 KLYEGYRYKDILVLLGDVDSYQLQLGKIFDQYD 349 (1076)
T ss_pred HHHcCCChhheEEEcCCHHHHHHHHHHHHhhcC
Confidence 99889999999999999888 778888776543
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.034 Score=63.81 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=41.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccH--HHHHHHHHHHHhcCCeEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSN--IAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN--~AvD~L~erL~~~gl~vv 576 (959)
...++.||+|+|||||++.++..+... +.+|+++ +-+. .|++++..-....+++++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~RiaAvEQLk~yae~lgipv~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHhhhcCCcEE
Confidence 467899999999999999999888765 5677655 4454 478888765555555544
No 228
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.38 E-value=0.023 Score=62.24 Aligned_cols=46 Identities=35% Similarity=0.647 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLT 565 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~ 565 (959)
...++|.|+||||||..+...++..++. +.+++.++..-.+.+-+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLE 68 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHH
Confidence 5789999999999999999999999987 789999988665554443
No 229
>PRK06921 hypothetical protein; Provisional
Probab=95.37 E-value=0.041 Score=60.59 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
....+++||||||||+++.+++..+++..+..|+.++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 35689999999999999999998888753566766664
No 230
>PF05729 NACHT: NACHT domain
Probab=95.36 E-value=0.014 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
++.+|.|+||+|||+++..++..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhc
Confidence 367899999999999999999888876
No 231
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.35 E-value=0.016 Score=66.32 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQ-------RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 506 N~sQ~~AV~~al~-------~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
-+.|.+.+...+. .+..+|.||||||||+++..++.++..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567766666653 257899999999999999888877754
No 232
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.33 E-value=0.023 Score=67.92 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..++||.||||||||+.+...++..+++ +.+++++++ -...+++..+..+.|++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~-eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN-KERAILFAY-EESRAQLLRNAYSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEe-eCCHHHHHHHHHHcCCC
Confidence 4578999999999999999999998886 679999985 56677788888777654
No 233
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.32 E-value=0.019 Score=63.00 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+..++.||||||||+++..++..+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999888876654
No 234
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.31 E-value=0.038 Score=64.91 Aligned_cols=56 Identities=27% Similarity=0.311 Sum_probs=37.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH-HccCCCEEEE-cccHH--HHHHHHHHHHhcCCeE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV-KQTGSPVLVC-APSNI--AVDQLTEKIHRTGLKV 575 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~~~rILV~-ApSN~--AvD~L~erL~~~gl~v 575 (959)
.+.++.||+|+|||||++.++..+. ...+.+|+++ +.+.. |++++...-...++++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~ 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce
Confidence 4678899999999999999998887 4456676655 44432 5555544333344443
No 235
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.065 Score=61.37 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=22.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..||.||+|+|||+++-.++..|+..
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999999998887753
No 236
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.27 E-value=0.032 Score=60.09 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.||||||||+.+..++.+++...+.+++.++.-..+. ++.+|+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~-~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE-QLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHH-HHHHHHH
Confidence 4589999999999999999999998887678999998766444 4445553
No 237
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.27 E-value=0.012 Score=62.59 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=21.7
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccC
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDH 697 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~ 697 (959)
.-++++|||...++-.. .|.|.+-...--+++|--
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g 137 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKG 137 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSS
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccc
Confidence 34789999999888754 788877543333666753
No 238
>KOG0922|consensus
Probab=95.27 E-value=0.04 Score=65.94 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=43.0
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 514 KHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 514 ~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
...-.+.+.+|.|.-|+||||=+-..++..--...++|.++=|-..||-.++.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAe 117 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAE 117 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHH
Confidence 333358899999999999999765544332111344599999999999999999975
No 239
>KOG0743|consensus
Probab=95.23 E-value=0.0099 Score=68.39 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
=.|+.||||||||+.+++++.+|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999766
No 240
>PRK09694 helicase Cas3; Provisional
Probab=95.23 E-value=0.053 Score=68.74 Aligned_cols=67 Identities=18% Similarity=0.401 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..++-|..+.......++.+|.+|.|+|||..+...+..++.. ...+|+++.||-..+++|.+|+.+
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 4678898775444457899999999999999988887777665 346899999999999999999875
No 241
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=95.20 E-value=0.063 Score=65.24 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=40.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 517 IQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 517 l~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+.=...||.|-+|+|||+-+..+... -..||+..|..|+.||..+|.+
T Consensus 57 lPF~~ylITGtAGaGKStsIq~L~~~------ldCviTGaT~vAaQNls~~L~~ 104 (818)
T PF02689_consen 57 LPFSVYLITGTAGAGKSTSIQTLAEN------LDCVITGATVVAAQNLSSKLSR 104 (818)
T ss_pred cceEEEEEeccCCCCccchHHHHHhh------hCeEEecchhhhHhHHHHHhcc
Confidence 33345799999999999998887743 3689999999999999999984
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.20 E-value=0.038 Score=62.69 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
....++.||||||||+.+.+++..++.. +.+|+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEH
Confidence 4668999999999999999999888875 566766553
No 243
>KOG0338|consensus
Probab=95.19 E-value=0.43 Score=55.66 Aligned_cols=69 Identities=23% Similarity=0.265 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHHHhcC----CCCcccCCceEEeecccCCCccccEEEEEccccC
Q psy3251 806 NVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQG----SLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSN 879 (959)
Q Consensus 806 ~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~----~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn 879 (959)
++..++.+++ ...+.|.+..+.|...++=.|.-.| .++..+.+.-.+.++..|+-.|-|+.|-..|-+.
T Consensus 416 ~l~~l~~rtf-----~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 416 MLASLITRTF-----QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred HHHHHHHHhc-----ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 4555666654 4568888999999988877665332 2333333444567788999999999998887764
No 244
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.18 E-value=0.28 Score=59.50 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 513 VKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 513 V~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+-....+..+++.-|==.|||.+++.++..++.. .+.+|+++|+...+++.+.++|..
T Consensus 248 ~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 248 AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 3344567889999999999999988777655544 688999999999999999888765
No 245
>KOG0335|consensus
Probab=95.14 E-value=0.058 Score=62.93 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHcc-----------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQT-----------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~-----------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..++-|+.+|......+=.++.|+-|+|||.. +.=++.++++.. ..++|++|||+..|+++.++-.+.
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 46778999998887777779999999999986 555666676651 257999999999999999987663
No 246
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.055 Score=66.07 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 508 SQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 508 sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
...+.+..++.. ...|+.||||||||+++..++..+.-
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 334455555432 34689999999999999888877653
No 247
>PRK05642 DNA replication initiation factor; Validated
Probab=95.11 E-value=0.068 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=27.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+..+|+||+|||||+.+.++..++... +.+++.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeH
Confidence 467899999999999988887776654 566766553
No 248
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.10 E-value=0.026 Score=67.39 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+++.|.+.++.++. +++.+|.||+|||||||+..++..+.
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 467889988888775 57899999999999999988775553
No 249
>KOG0333|consensus
Probab=95.10 E-value=0.88 Score=53.39 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHH-HHHHHHHHHHHc----------cCCCEEEEcccHHHHHHHHHHHH
Q psy3251 501 NLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTV-TSATIVYQLVKQ----------TGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~-Tia~ii~~Ll~~----------~~~rILV~ApSN~AvD~L~erL~ 569 (959)
+...-++-|+.||=-.++++-.|-.+-.|+|||. .+.-++..+... .+..-+++|||...+.++-+--.
T Consensus 264 ~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 264 GYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 4455678899999888888777778889999993 344444333332 24467899999999999977655
Q ss_pred hc----CCeEEEeec
Q psy3251 570 RT----GLKVVRVCA 580 (959)
Q Consensus 570 ~~----gl~vvRl~~ 580 (959)
+. |.+++++-+
T Consensus 344 kf~~~lg~r~vsvig 358 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIG 358 (673)
T ss_pred HhcccccceEEEEec
Confidence 43 566776643
No 250
>PRK10436 hypothetical protein; Provisional
Probab=95.09 E-value=0.028 Score=66.47 Aligned_cols=41 Identities=34% Similarity=0.535 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
++.+.|.+.+..++. +++.||.||.|+|||||+.+++..+.
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 467788888887764 68999999999999999988776653
No 251
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.05 Score=63.17 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=35.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCe
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~ 574 (959)
.+.+|.||+|+|||||++.++..+....+.+|++++ -+ ..|.+++.......+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 467899999999999999999876444466776654 33 22444444333334444
No 252
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.05 E-value=0.025 Score=55.42 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++.||||||||+++..++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999988888665
No 253
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.02 E-value=0.046 Score=56.38 Aligned_cols=57 Identities=26% Similarity=0.452 Sum_probs=37.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc--cHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP--SNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap--SN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
|+++|.|..|+||||++.+++. ....+.++.|+.. ....+| .+.+.+.+..++.+.+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~--~~~~~~~~~vI~ne~g~~~iD--~~~l~~~~~~v~~l~~ 59 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK--RNRQGERVAVIVNEFGEVNID--AELLQEDGVPVVELNN 59 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHTTTS-EEEEECSTTSTHHH--HHHHHTTT-EEEEECT
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HhcCCceeEEEEccccccccc--hhhhcccceEEEEecC
Confidence 6789999999999999998887 4445778777753 222333 2344556777777754
No 254
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.01 E-value=0.049 Score=61.27 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 503 PDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..++++-..+|..++. ++..+|.||||||||+++..++..|
T Consensus 47 y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 3578888888877774 6678999999999999988877554
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.98 E-value=0.036 Score=58.32 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
..+++|.||||||||+.+..++...... +.+++.++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 4678999999999999999998888776 56777776644
No 256
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.074 Score=60.34 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=30.7
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEc-cCCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL---GAKQLILVG-DHCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVG-D~~QL~Pvv~s~ 707 (959)
.++++|||||..+++.. .|+...- +...+||+- ++.+|.|++.|.
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 68899999999988754 4555543 224555555 455788887754
No 257
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.94 E-value=0.04 Score=58.95 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.||||||||+++..++.+.++. +.+++..+. ....+.+.++..+.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~-e~~~~~i~~~~~~~g~ 72 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTT-EESRESIIRQAAQFGM 72 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEc-cCCHHHHHHHHHHhCC
Confidence 4578999999999999999988777764 667777665 3334566666554443
No 258
>KOG0951|consensus
Probab=94.91 E-value=0.041 Score=69.46 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc----------cCCCEEEEcccHHHHHHHHH----H
Q psy3251 503 PDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ----------TGSPVLVCAPSNIAVDQLTE----K 567 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~----------~~~rILV~ApSN~AvD~L~e----r 567 (959)
..||..|-....+++. ....++.||.|.|||-+++.-+.+-++. .+.+|...||...-|+++.. |
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 3599999988888886 5788999999999999976655554443 23489999999999998876 5
Q ss_pred HHhcCCeEEEeec
Q psy3251 568 IHRTGLKVVRVCA 580 (959)
Q Consensus 568 L~~~gl~vvRl~~ 580 (959)
+...|++|..+.+
T Consensus 388 la~~GI~V~ElTg 400 (1674)
T KOG0951|consen 388 LAPLGITVLELTG 400 (1674)
T ss_pred ccccCcEEEEecc
Confidence 5556888776644
No 259
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.90 E-value=0.029 Score=61.63 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+...++.||||||||+++..++.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356778999999999999987775
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.87 E-value=0.032 Score=59.19 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+++|.||||||||+.+..++..+... +.++++.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 4578999999999999999999888765 66777774
No 261
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.80 E-value=0.14 Score=63.32 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=44.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc-C-CeEEEe
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT-G-LKVVRV 578 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~-g-l~vvRl 578 (959)
+..+.||+|||.+...++...+.. ++.+||+.|.-.-+.++.+++.+. + ..+..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~l 220 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGAGDVAVL 220 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEE
Confidence 445567999999999999988886 678999999999999999999864 3 344444
No 262
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.79 E-value=0.019 Score=56.28 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+.++.|||||||||.+..++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999777663
No 263
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.75 E-value=0.06 Score=61.98 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEE
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVC 554 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ 554 (959)
+.+...+.+.. .+++.+|.||+||||||++.+++.++.... ..+|+.+
T Consensus 137 l~~~~~~~l~~--~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 137 IEPDLFNSLLP--AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCHHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 44444444432 478999999999999999999988877643 3445443
No 264
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.71 E-value=0.061 Score=62.36 Aligned_cols=40 Identities=35% Similarity=0.491 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 507 RSQVYAVKHAIQ-------RPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 507 ~sQ~~AV~~al~-------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
+.|.+.+...+. .+..+|.||||||||+++..++..+...
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345555555541 2568999999999999999988777654
No 265
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.69 E-value=0.039 Score=58.89 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+++|.||||||||+.+..++...++. +.+++.+..-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 4578999999999999999999888775 5677766554
No 266
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.68 E-value=0.04 Score=56.48 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=36.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+++|.||||||||+.+..++.. .+.+++.++.....-+++.+|+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 4789999999999998877654 356888888777667778888764
No 267
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.67 E-value=0.047 Score=66.47 Aligned_cols=40 Identities=33% Similarity=0.455 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+.|.+.+..++. +++.||.||.|+|||||+.+++..+
T Consensus 299 g~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 299 GFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 467788888887765 6899999999999999998877655
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.67 E-value=0.046 Score=53.01 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=23.7
Q ss_pred CCcEE-EEcCCCChHHHHHHHHHHHHHHc
Q psy3251 519 RPLSL-IQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 519 ~~l~L-IqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.|++| ..||||||||.++..++.+|.+.
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 45543 79999999999999999998876
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.055 Score=61.96 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEE-EEcccH--HHHHHHHHHHHhcCCeE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVL-VCAPSN--IAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rIL-V~ApSN--~AvD~L~erL~~~gl~v 575 (959)
..+.+|.||.|+|||||++.++..+... +.+|. |.+-+- .|++++.......++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVEL 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCE
Confidence 4578899999999999999999887665 55665 445454 45788877666555554
No 270
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.65 E-value=0.39 Score=59.42 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHh---c--CCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAI---Q--RPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al---~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+++.|.+|+.... . ....+|++.=|=|||..+--.++.+.... ..+|+|+|||-.|++.+.+-+.+
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHH
Confidence 36778888776543 2 34789999999999999875555555443 46999999999999999886643
No 271
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.62 E-value=0.043 Score=62.05 Aligned_cols=41 Identities=32% Similarity=0.559 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 506 NRSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 506 N~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
++...+.+..++.+ +..++.||||||||+++..++..+...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44555555555543 368999999999999999888777543
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.58 E-value=0.23 Score=57.67 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH-HHHc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ-LVKQ 546 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~ 546 (959)
+-..+..||||||||++..++..+ .+..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~s 237 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILIS 237 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHc
Confidence 456788999999999999887655 4443
No 273
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.53 E-value=0.029 Score=62.36 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..++.||||||||+++..++..+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999998887776654
No 274
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.50 E-value=0.064 Score=60.46 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~ 563 (959)
..+++|.||||||||+.+..++....+. +.+++.+..-+..-..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH
Confidence 3589999999999999999998888776 6777777655443333
No 275
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.50 E-value=0.033 Score=63.62 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.++.+|.||+|+|||||+..++..+....+.+|+.+-
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 6899999999999999999888766543345555543
No 276
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.47 E-value=0.046 Score=61.07 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..++.||||||||+++..++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999988776543
No 277
>CHL00181 cbbX CbbX; Provisional
Probab=94.46 E-value=0.041 Score=61.25 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=21.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..++.||||||||+++..++..+...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36889999999999998888766543
No 278
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.36 E-value=0.035 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|+|||||||++..+...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999998888776
No 279
>PHA00729 NTP-binding motif containing protein
Probab=94.33 E-value=0.034 Score=59.43 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=20.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..+|.|+||||||+++..++..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887664
No 280
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.28 E-value=0.058 Score=60.61 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
-.++.||||||||+.+.+++..+++. +.+++++..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~ 192 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHF 192 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEH
Confidence 47899999999999999999999865 556665543
No 281
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.26 E-value=0.071 Score=62.58 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.+++.|...+..++. +++.|+.||-|||||||+-+++..+..
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 357788888888886 578999999999999999888866654
No 282
>KOG2028|consensus
Probab=94.26 E-value=0.052 Score=60.66 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=36.0
Q ss_pred HHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHH
Q psy3251 509 QVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 509 Q~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL 568 (959)
|.-.+.+.+. -|-.++|||||||||+.+..++. -.+.+..+.+-++-||.-+..+..-+
T Consensus 149 q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~-tsk~~SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 149 QDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS-TSKKHSYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred cchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh-hcCCCceEEEEEeccccchHHHHHHH
Confidence 4444455443 25678999999999987655442 22223345666677776666655443
No 283
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.26 E-value=0.071 Score=64.26 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..++||.|+||||||+.+..++++-+.+.+.++|.++... ..+++.+++...|.+
T Consensus 31 Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee-~~~~i~~~~~~~g~d 85 (509)
T PRK09302 31 GRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE-SPEDIIRNVASFGWD 85 (509)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC-CHHHHHHHHHHcCCC
Confidence 5678999999999999999999887776578898887755 566777777776654
No 284
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.25 E-value=0.072 Score=63.03 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.|+||+|||+.+..++..+.+. +.++|.++... ..+++..|..+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ee-s~~qi~~ra~rlg~ 132 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEE-SASQIKLRAERLGL 132 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccc-cHHHHHHHHHHcCC
Confidence 4578999999999999999999888764 67888888644 45677777665554
No 285
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=94.22 E-value=0.13 Score=68.30 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=36.2
Q ss_pred EEcCCCChHHHHHHH-HHHHHHHcc-----------CCCEEEEcccHHHHHHHHHHHH
Q psy3251 524 IQGPPGTGKTVTSAT-IVYQLVKQT-----------GSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 524 IqGPPGTGKT~Tia~-ii~~Ll~~~-----------~~rILV~ApSN~AvD~L~erL~ 569 (959)
|..|.|||||.+..- ++..++..+ +.++|+++|+..-+.++.++|.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~ 58 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQ 58 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHH
Confidence 568999999998655 666666531 3579999999999988888775
No 286
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.22 E-value=0.075 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|.|+||+|||+++..+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998888776
No 287
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.19 E-value=0.061 Score=55.81 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 504 DLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+++.|.+.+..++. ....+|.||+|+||||++..++..+ . +..+++..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~-~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-P-PDERIITI 58 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-C-CCCCEEEE
Confidence 467889999988876 5678999999999999998766433 2 33455443
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.16 E-value=0.079 Score=61.13 Aligned_cols=53 Identities=28% Similarity=0.486 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.|+||+|||+++..++..+.+. +.+||+++... ..+++..|..+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EE-s~~qi~~Ra~rlg~ 134 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEE-SPEQIKLRADRLGI 134 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCc-CHHHHHHHHHHcCC
Confidence 4678999999999999999999888775 56898887653 45667776665544
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.14 E-value=0.069 Score=62.46 Aligned_cols=40 Identities=25% Similarity=0.555 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 505 LN~sQ~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..+...+.+..++ ..+..++.||||||||+++..++..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445555555555 467889999999999999887776554
No 290
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.12 E-value=0.15 Score=60.50 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~Ap 556 (959)
+..+|.||||||||+++.++...+.+.. +.+++.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4578999999999999999998887763 455665543
No 291
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.09 E-value=0.077 Score=47.49 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.++.|.+|+|||+++..++..|.+. +.+++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEC
Confidence 5788999999999999999888774 67888777
No 292
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.056 Score=60.63 Aligned_cols=19 Identities=47% Similarity=0.917 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.|+.||||||||-.+.+.+
T Consensus 188 VLLYGPPGTGKTLLAkAVA 206 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVA 206 (406)
T ss_pred eEeeCCCCCcHHHHHHHHH
Confidence 6889999999998876666
No 293
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.24 Score=57.13 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.6
Q ss_pred HHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 511 YAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 511 ~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
+.+..++.+ ...|+.||+|+||++++..++..|+-.
T Consensus 29 ~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 29 AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 345555543 247999999999999999999888754
No 294
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.05 E-value=0.077 Score=63.96 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+++|.||||||||+.+..++...++. +.+++++++... .+.+.+++...|.+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~-~~~i~~~~~~~g~~ 326 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEES-RAQLIRNARSWGID 326 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCC-HHHHHHHHHHcCCC
Confidence 4678999999999999999999888775 689999988764 66777777766654
No 295
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.04 E-value=0.083 Score=57.69 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHh---c--CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAI---Q--RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 506 N~sQ~~AV~~al---~--~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..+.+|+.... . .++.+|.||||+|||+++..++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 445555655432 2 4578999999999999988876554
No 296
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.99 E-value=0.69 Score=53.52 Aligned_cols=56 Identities=30% Similarity=0.473 Sum_probs=41.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-ccc--HHHHHHHHHHHHhcCCeEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APS--NIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApS--N~AvD~L~erL~~~gl~vvR 577 (959)
+.+..|==|+|||||++.++.+|-+. +.++|++ |-+ -.|.++|..--.+.+++++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 35678999999999999999999885 5665555 444 66778876655556666554
No 297
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.04 Score=55.37 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|.|||||||||++..++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 4689999999999988877554
No 298
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.95 E-value=0.046 Score=62.96 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++.||||||||+++.+++..+
T Consensus 159 vLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999988777543
No 299
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.95 E-value=0.27 Score=52.52 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEc
Q psy3251 506 NRSQVYAVKHAIQR-----PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCA 555 (959)
Q Consensus 506 N~sQ~~AV~~al~~-----~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~A 555 (959)
|..=..|+.....+ +..+|+||+|+|||+.+.++...+.+. ++.+|+.+.
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 44444444444331 347899999999999999999888765 456666654
No 300
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.92 E-value=0.069 Score=60.60 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..+|.||||||||+++..++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 468999999999999998777544
No 301
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.23 Score=56.52 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=30.2
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEc-cCCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL---GAKQLILVG-DHCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVG-D~~QL~Pvv~s~ 707 (959)
.+++||||||..++... .|+..+- ....+||+. ++.+|.|++.+.
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 57899999998888643 4555543 234566666 456688876654
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.89 E-value=0.097 Score=59.08 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAV 561 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~Av 561 (959)
..++.|.||||||||+++..+++...+. +.+++.+..-+..-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHH
Confidence 3589999999999999999998888775 56777776654433
No 303
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.13 Score=59.30 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhc------CC-cEEEEcCCCChHHHHHHHHHHHHHHccCCC--EEEEcccHHHHHHHHHHHHh
Q psy3251 507 RSQVYAVKHAIQ------RP-LSLIQGPPGTGKTVTSATIVYQLVKQTGSP--VLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 507 ~sQ~~AV~~al~------~~-l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~r--ILV~ApSN~AvD~L~erL~~ 570 (959)
++|...+..++. .| ..+|.||||||||.|+..+..++....... +=|=|..+....++..+|..
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 567777766553 12 378999999999999999998887653333 33335555555555555543
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.88 E-value=0.13 Score=65.08 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..+|+.||||+|||+++..++..|.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999988887765
No 305
>KOG0780|consensus
Probab=93.87 E-value=0.16 Score=57.41 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=44.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHH--HHHHHHHHHHhcCCeEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI--AVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~--AvD~L~erL~~~gl~vv 576 (959)
.+.++.|--|+|||||+..+++++-+.+.+..||||.|-+ |-|+|..--.+.++++.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 4578899999999999999999988887777899988754 56777665555555544
No 306
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.86 E-value=0.071 Score=66.23 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhc------C--CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ------R--PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 507 ~sQ~~AV~~al~------~--~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.|.+.|..++. . .+.+|.|+||||||.|+..++..|..
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 466666666553 1 23469999999999999998876643
No 307
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.79 E-value=0.047 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+|.|||||||||.+..++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999998877643
No 308
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.79 E-value=0.25 Score=55.81 Aligned_cols=45 Identities=9% Similarity=0.216 Sum_probs=32.8
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEcc-CCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL---GAKQLILVGD-HCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVGD-~~QL~Pvv~s~ 707 (959)
.+++||||+|..+++.. +|+...- +...+||+.+ +.+|.|++.|.
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 67999999999988754 4555542 2456888887 56788887764
No 309
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.76 E-value=0.075 Score=61.79 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=18.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-.|+.||||||||+++.+++..
T Consensus 167 gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHH
Confidence 3789999999999998877654
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.75 E-value=0.051 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-++.+|.|||||||||++..++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999988887543
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.72 E-value=0.056 Score=56.29 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=23.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
++.+++|+||+|||+.+.+++..|-+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 578999999999999999999777654
No 312
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.70 E-value=0.15 Score=57.34 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 505 LN~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++...+.+...+.+ .+.++.||||||||+++..+...+
T Consensus 25 ~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 25 LPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 455656666655532 356679999999999988776544
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.70 E-value=0.069 Score=63.01 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.0
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 514 KHAIQRPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 514 ~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.+...||.||||||||+++..+...+.
T Consensus 34 ~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 3445688999999999999999888776543
No 314
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.66 E-value=0.059 Score=59.22 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 508 SQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 508 sQ~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
...+.+..+. ..+..+|.||+||||||++.+++..+-.. ..+|+++-.
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd 163 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIED 163 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEES
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEecc
Confidence 3344444443 36789999999999999998887655432 356666543
No 315
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=93.66 E-value=0.28 Score=60.30 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEEcCC-----CChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEE
Q psy3251 523 LIQGPP-----GTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVR 577 (959)
Q Consensus 523 LIqGPP-----GTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvR 577 (959)
|.+|-= |.|||.|++..++..+. .+..|.|+|+|..-|.+=++.+.. .|+++--
T Consensus 90 Ll~G~VaEM~TGEGKTLvA~l~a~l~AL-~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 90 LLAGDVIEMATGEGKTLAGAIAAAGYAL-QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred HhCCCcccccCCCCHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 345655 99999998877765443 488999999999888777766543 3555543
No 316
>PRK13768 GTPase; Provisional
Probab=93.58 E-value=0.084 Score=57.69 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=28.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+|.||+|+||||++..++..+... +.+++++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~ 37 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVN 37 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEE
Confidence 46899999999999999999888764 67877764
No 317
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.58 E-value=0.14 Score=59.97 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=50.1
Q ss_pred HHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 508 SQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 508 sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|-+||+.... ...-.+.|.-|||||.|++.+|..+ +.+.||+||+...|-+|..-+...
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~----~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV----QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh----CCCeEEEecchhHHHHHHHHHHHh
Confidence 58888887663 2456789999999999999998665 578999999999999999988764
No 318
>PRK06851 hypothetical protein; Provisional
Probab=93.57 E-value=0.079 Score=60.76 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE--EcccHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV--CAPSNIAVDQL 564 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV--~ApSN~AvD~L 564 (959)
....+|.||||||||+++..++..+.++ +.+|.+ |+.-+...|.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCcceE
Confidence 5779999999999999999999888776 555444 34444444433
No 319
>KOG0342|consensus
Probab=93.55 E-value=0.2 Score=58.15 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHc-----cCCCEEEEcccHHHHHHHHHHHH
Q psy3251 500 PNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 500 ~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.++..+++-|...+.-.+...=.|..+--|||||.. +.-++..+++. ++-.++|++||..-+-++..-+.
T Consensus 100 ~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 100 MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHH
Confidence 445678999999998888877889999999999986 34444444443 34469999999998888766543
No 320
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.54 E-value=0.12 Score=59.40 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.+++.+|.||.|+|||||+..++..+...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46899999999999999999988777654
No 321
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.53 E-value=0.063 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=21.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.|.||||+|||+++..++..+++.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999988888764
No 322
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.53 E-value=0.082 Score=63.17 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=20.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
-.|+.||||||||+++.+++..+.
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhc
Confidence 378999999999999888877664
No 323
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.50 E-value=0.17 Score=64.94 Aligned_cols=62 Identities=29% Similarity=0.360 Sum_probs=45.4
Q ss_pred CCHHHHH---HHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHH
Q psy3251 505 LNRSQVY---AVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 505 LN~sQ~~---AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~er 567 (959)
..+.|.+ +|..++. +...+|.+|+|||||..-..-+...+. .+.+|+|.++|..-.+++..+
T Consensus 246 ~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 246 YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHH
Confidence 4567886 5555554 567889999999999874443333333 467999999999988998764
No 324
>PF12846 AAA_10: AAA-like domain
Probab=93.49 E-value=0.096 Score=57.69 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
++.++|.|++|+|||+++..++.+++.. +.++++.=+...-.. +++. .+.+++.+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~-g~~~~i~D~~g~~~~-~~~~---~~~~~i~~~~~ 58 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR-GPRVVIFDPKGDYSP-LARA---LGGQYIDIDPG 58 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc-CCCEEEEcCCchHHH-HHHh---cCceEEEeecC
Confidence 4678999999999999999999888886 678888877755554 3222 56666665543
No 325
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.49 E-value=0.28 Score=52.99 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH-HHHHHHHHHHHhcCCeEEEee
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN-IAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN-~AvD~L~erL~~~gl~vvRl~ 579 (959)
...+|++|+.|||||+++.+++..+... +-|++=+.... .....|.+.|.....+.+-++
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~-GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~ 112 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQ-GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFC 112 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhc-CceEEEECHHHhccHHHHHHHHhcCCCCEEEEe
Confidence 3568999999999999999988777665 45655554443 344555555555555655544
No 326
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.49 E-value=0.12 Score=61.13 Aligned_cols=53 Identities=32% Similarity=0.461 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.|+||+|||+++..++..+.+. +.++|.++.-. ..+++..|..+.+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE-s~~qi~~ra~rlg~ 146 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE-SLQQIKMRAIRLGL 146 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC-CHHHHHHHHHHcCC
Confidence 4578999999999999999999888775 56888887643 35667666655443
No 327
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.47 E-value=0.091 Score=61.81 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=19.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.|+.||||||||+++.+++..+
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47889999999999988877543
No 328
>KOG0781|consensus
Probab=93.47 E-value=0.33 Score=56.33 Aligned_cols=46 Identities=37% Similarity=0.463 Sum_probs=36.2
Q ss_pred CCc-EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHH
Q psy3251 519 RPL-SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLT 565 (959)
Q Consensus 519 ~~l-~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~ 565 (959)
+|+ ..+.|-.|-||+|.++.|++.|+++ +.+|||.| +---||.+|.
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqN-kfrVLIAACDTFRsGAvEQLr 426 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQN-KFRVLIAACDTFRSGAVEQLR 426 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhC-CceEEEEeccchhhhHHHHHH
Confidence 454 4578999999999999999998886 78999885 3345677763
No 329
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.46 E-value=0.079 Score=44.96 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.++|.||.|+||||++-++...|.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 48999999999999999988877763
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.46 E-value=0.078 Score=57.49 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.=|+||||.||+|.+-+++..+.+. +.+|-|+|
T Consensus 32 iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlA 64 (266)
T PF03308_consen 32 IGITGPPGAGKSTLIDALIRELRER-GKRVAVLA 64 (266)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEE
T ss_pred EEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEE
Confidence 3489999999999999999998875 67766665
No 331
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.39 E-value=0.084 Score=54.16 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=34.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+|.||||||||+.+..++..+ +.+++.++.....-+++.+|+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHH
Confidence 47999999999999987776442 44667777656666778888754
No 332
>KOG4284|consensus
Probab=93.36 E-value=0.081 Score=62.82 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHHc-cCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~-~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
++-|..||-.++..==.+||+-.|||||-+-+.++.. |.-+ ..-.++|++||..-+-++.+-+.+.+.
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~ 118 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAP 118 (980)
T ss_pred CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcc
Confidence 4569999988876666799999999999875554433 3322 345799999999999999888776544
No 333
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=0.34 Score=54.87 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=31.7
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEcc-CCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL---GAKQLILVGD-HCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVGD-~~QL~Pvv~s~ 707 (959)
.++++|||+|..+++.. +|+...- ....+||+.+ +.+|.|++.|+
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 68999999999988654 4555542 2345666666 56799988764
No 334
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.35 E-value=0.15 Score=59.69 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~A 555 (959)
..+|.||||||||+++.++...+.+.. +.+++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 568999999999999999988887653 45676664
No 335
>PHA02533 17 large terminase protein; Provisional
Probab=93.32 E-value=0.85 Score=55.19 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVY-QLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.|++.|+..+.......+.+|.=|=..|||++++.++. .++..++.+|+++|++...+..+.+++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik 125 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTK 125 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 58999999988766677888999999999999987554 4444566799999999999999988765
No 336
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.30 E-value=0.2 Score=62.31 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=49.9
Q ss_pred CHHHHHHH---HHHhcCC-cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 506 NRSQVYAV---KHAIQRP-LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 506 N~sQ~~AV---~~al~~~-l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
-+.|++.+ ..++.++ ..+|++|.|||||.-....+.......+.+|++++.|+..-+++.++...
T Consensus 17 r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 17 RPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 45676644 4455554 49999999999999866655555555578999999999999999988754
No 337
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.33 Score=54.81 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=31.6
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh--cCCeEEEEc-cCCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL--GAKQLILVG-DHCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~--~~krvVLVG-D~~QL~Pvv~s~ 707 (959)
.+.+||||+|..+++.. +|+..+- +...+||+. ++.+|.|++.|.
T Consensus 124 ~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SR 173 (314)
T PRK07399 124 PRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSR 173 (314)
T ss_pred CceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhh
Confidence 68999999998888644 4555542 234567666 677888887654
No 338
>KOG0331|consensus
Probab=93.21 E-value=0.26 Score=58.53 Aligned_cols=68 Identities=22% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHH-c------cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVK-Q------TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~-~------~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++-|.+..-.++...=.+..+--|||||.- +.=+|.+|.. + .+.++||++||...|.++..-..+.
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 45677888888888777777788899999975 3444555554 1 2346999999999999998877654
No 339
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.18 E-value=0.075 Score=54.42 Aligned_cols=25 Identities=40% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.+|+|+||+||||++..++..|-+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 4799999999999999988777543
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.18 E-value=0.11 Score=60.70 Aligned_cols=28 Identities=39% Similarity=0.763 Sum_probs=22.9
Q ss_pred CCcEE-EEcCCCChHHHHHHHHHHHHHHc
Q psy3251 519 RPLSL-IQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 519 ~~l~L-IqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.|+.+ |.|||||||||.+..+|..+.+.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ 96 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ 96 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh
Confidence 34444 89999999999999999887664
No 341
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.16 E-value=0.069 Score=64.12 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=20.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.|+.||||+|||+|+..++..|
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999997777655
No 342
>PRK08233 hypothetical protein; Provisional
Probab=93.11 E-value=0.063 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..|.|||||||||++..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999998877654
No 343
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.11 E-value=0.1 Score=56.30 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=31.3
Q ss_pred HhcCCc-EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 516 AIQRPL-SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 516 al~~~l-~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
++..++ .+|.||+|||||+++..+++.+.+.. ..|.++++
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f-~~I~l~t~ 49 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKF-DHIFLITP 49 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhhcccC-CEEEEEec
Confidence 455665 56999999999999999998876653 56777776
No 344
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.078 Score=63.09 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.|++||||||||+++..++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 689999999999999888776643
No 345
>KOG0348|consensus
Probab=93.05 E-value=0.31 Score=57.07 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHcc-------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQT-------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~-------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.++.-|.++|=..+...=.+|.++-|||||-. +.-+|..|..+. +.=-||++||...|-++.+-+.++
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 46778999999999988899999999999987 445565565541 223799999999999988776654
No 346
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.01 E-value=0.056 Score=52.58 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCc
Q psy3251 665 HSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGP 702 (959)
Q Consensus 665 d~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~P 702 (959)
.++++||...++.-. +|+-+. ..++|-+-|....||.
T Consensus 64 ~ill~DEiNrappktQsAlLeam-~Er~Vt~~g~~~~lp~ 102 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAM-EERQVTIDGQTYPLPD 102 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHH-HHSEEEETTEEEE--S
T ss_pred ceeeecccccCCHHHHHHHHHHH-HcCeEEeCCEEEECCC
Confidence 689999998887422 232222 3467888888888875
No 347
>PRK09354 recA recombinase A; Provisional
Probab=92.99 E-value=0.16 Score=57.87 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD 562 (959)
..+++|.||||||||+++..++....+. +.+++.+..-+..-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHH
Confidence 3489999999999999999998887765 567777665544333
No 348
>KOG0923|consensus
Probab=92.99 E-value=0.15 Score=60.88 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=41.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHH-HccCCCEEEEcccHHHHHHHHHHHHh-cCCe
Q psy3251 517 IQRPLSLIQGPPGTGKTVTSATIVYQLV-KQTGSPVLVCAPSNIAVDQLTEKIHR-TGLK 574 (959)
Q Consensus 517 l~~~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~~~rILV~ApSN~AvD~L~erL~~-~gl~ 574 (959)
-.+.+.+|.|-+|+||||-+=.-++.-= ..++++|-++-|-..||--++.|+.+ .|.+
T Consensus 278 ~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 278 KEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred HhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 3478899999999999997644332211 11345588888999999999999975 3443
No 349
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.96 E-value=0.13 Score=57.54 Aligned_cols=38 Identities=34% Similarity=0.569 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 507 ~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+.+.+.+...+.. +..+++||||||||+++..++..+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4455566655542 4579999999999999988887764
No 350
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.93 E-value=0.25 Score=63.89 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=46.3
Q ss_pred CHHHHH---HHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHH
Q psy3251 506 NRSQVY---AVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 506 N~sQ~~---AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~er 567 (959)
-+.|.+ +|..++. +...+|.+|+|||||..=..-+...+...+++|+|.|+|..--++|.++
T Consensus 259 R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 259 REGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 356777 6776775 4677899999999998633222233344578999999999999999775
No 351
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.92 E-value=0.12 Score=57.92 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+..|.||||+|||+++..++..+... +.++.+++
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIA 69 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 4567889999999999999999877765 66777765
No 352
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.89 E-value=0.076 Score=52.70 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+|.|+||+||||++..+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999998877654
No 353
>PRK08118 topology modulation protein; Reviewed
Probab=92.86 E-value=0.085 Score=53.92 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+||||.+..+...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999877666644
No 354
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.84 E-value=0.22 Score=59.38 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEc-cc--HHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCA-PS--NIAVDQLTE 566 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~A-pS--N~AvD~L~e 566 (959)
..+..|.||+|+|||||+..++..+.... +.+|.+++ .+ ..|.+++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ 401 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS 401 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHH
Confidence 35778899999999999999998877653 45676554 33 234445443
No 355
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.84 E-value=0.29 Score=57.91 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=29.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+..+|.||||+|||+.+.++...+... +.+|+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeH
Confidence 356899999999999999998888764 677877764
No 356
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.82 E-value=0.15 Score=50.70 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=26.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
|...|.||.||||||++..++..|.++ +.++.++-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEE
Confidence 467899999999999999999888875 55555443
No 357
>PRK06620 hypothetical protein; Validated
Probab=92.80 E-value=0.15 Score=54.41 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATI 539 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~i 539 (959)
+..+|+||||||||+.+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34799999999999998753
No 358
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.11 Score=59.84 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.||||||||+++..++..+.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhc
Confidence 458999999999999988887664
No 359
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.73 E-value=0.12 Score=54.40 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=22.9
Q ss_pred HHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 507 ~sQ~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+.-+.|+.-+. ...-.|+.||||||||+++..+..
T Consensus 9 e~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 9 EEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp HHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 34555655444 456789999999999998776663
No 360
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.70 E-value=0.089 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.|+|||||||++..+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 478999999999999877755
No 361
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.69 E-value=0.081 Score=53.84 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
..+|+|.|||||||+...+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 46899999999999865544
No 362
>KOG3347|consensus
Probab=92.68 E-value=0.097 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.785 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
.|-.||.|-|||||||+...++
T Consensus 7 ~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHH
Confidence 5778999999999999987766
No 363
>KOG0385|consensus
Probab=92.65 E-value=0.66 Score=56.59 Aligned_cols=147 Identities=21% Similarity=0.313 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHh---cCCcE-EEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc--CCeE
Q psy3251 504 DLNRSQVYAVKHAI---QRPLS-LIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT--GLKV 575 (959)
Q Consensus 504 ~LN~sQ~~AV~~al---~~~l~-LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~--gl~v 575 (959)
.|-+.|.+-+.-.. .+++- ++---=|=|||.-..+.+.+|... -+++.||++|- ...++-...+.+. .+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~-StL~NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPK-STLDNWMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeH-hhHHHHHHHHHHhCCCcce
Confidence 46677877666543 35554 444578999998655555555542 36789999994 4566666666664 5566
Q ss_pred EEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccCceeeeeccc
Q psy3251 576 VRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLL--DNADVICCTCVG 653 (959)
Q Consensus 576 vRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL--~~a~VI~~T~~~ 653 (959)
+.+.+...+ ... ..+.++ ...+|+++|-..
T Consensus 246 ~~~~Gdk~e-----------------------R~~-------------------------~~r~~~~~~~fdV~iTsYEi 277 (971)
T KOG0385|consen 246 VVYHGDKEE-----------------------RAA-------------------------LRRDIMLPGRFDVCITSYEI 277 (971)
T ss_pred EEEeCCHHH-----------------------HHH-------------------------HHHHhhccCCCceEeehHHH
Confidence 665442110 000 001111 145666666544
Q ss_pred cCC--cccccCCcCEEEEECCCCCChhhhHhh-hh---hcCCeEEEEccCCC
Q psy3251 654 AGD--PRLLKIKFHSILIDESMQATEPECMVP-VI---LGAKQLILVGDHCQ 699 (959)
Q Consensus 654 a~~--~~l~~~~fd~VIIDEAsQ~~Epe~Lip-l~---~~~krvVLVGD~~Q 699 (959)
+.. ..+.++.+.++|||||..+--..+++. ++ ....++.+.|-|-|
T Consensus 278 ~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 278 AIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQ 329 (971)
T ss_pred HHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCccc
Confidence 322 236778899999999999887776443 22 24679999999999
No 364
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.64 E-value=0.14 Score=60.83 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=28.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHcc-CCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQT-GSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~~rILV~A 555 (959)
.+.++.||.|+|||||++.++..+.... ..+|.+++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4788999999999999999998876543 34676554
No 365
>PRK14530 adenylate kinase; Provisional
Probab=92.61 E-value=0.1 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..+|.||||+||||.+..++..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999988777544
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.61 E-value=0.18 Score=54.43 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=36.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc-----------cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ-----------TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~-----------~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+.+|.||||||||+.+..++..+..- .+.+||+++--+. .+++.+|+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~-~~~i~~Rl~~i 63 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP-REEIHRRLEAI 63 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC-HHHHHHHHHHH
Confidence 67999999999999999998776531 3457888875443 34667777653
No 367
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.58 E-value=0.11 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....+|.||||||||+++..++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3567899999999999988887655
No 368
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.57 E-value=0.16 Score=59.92 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|.|+||+|||+.+..++.+++...+.+|++.+.-. ..+++.+|+..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm-~~~~i~~R~~~ 245 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM-SAEQLAMRMLS 245 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC-CHHHHHHHHHH
Confidence 4589999999999999999999988765567899887755 44556666654
No 369
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.54 E-value=0.15 Score=54.19 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-----CCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-----GSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-----~~rILV~ApSN 558 (959)
..++.|.||||+|||+++..++...+... +.+++.++..+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 46899999999999999999987766542 15666665543
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.49 E-value=0.17 Score=50.70 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.|++|+|||+++..++..+... +.+++++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~-g~~v~ii~ 34 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR-GKRVAVLA 34 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 4678999999999999998777665 66777765
No 371
>PRK14531 adenylate kinase; Provisional
Probab=92.49 E-value=0.1 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-.+|.|||||||||.+..++..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999998777644
No 372
>KOG1131|consensus
Probab=92.48 E-value=2.4 Score=49.86 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=43.5
Q ss_pred CCHHHHHH---HHHHhc-CCcEEEEcCCCChHHHHHHHHHHH-HHHcc--CCCEEEEcccHHHHHHHHHHH
Q psy3251 505 LNRSQVYA---VKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQ-LVKQT--GSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 505 LN~sQ~~A---V~~al~-~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~~--~~rILV~ApSN~AvD~L~erL 568 (959)
.=++|.+. ++.+|. .+..|+.=|.|||||..+..++.. .+..+ ..+++.|+.|-.-++...+-|
T Consensus 17 iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 17 IYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 34578654 445554 689999999999999997665543 33333 357999999965555444433
No 373
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.43 E-value=0.16 Score=55.40 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...|+.||||.||||.+.-++..|
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 468999999999999776665444
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.43 E-value=0.25 Score=59.77 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
..-.+|.||+|+|||+.+.+++
T Consensus 419 G~~llI~G~SG~GKTsLlRaia 440 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALA 440 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3567999999999999987776
No 375
>PRK06762 hypothetical protein; Provisional
Probab=92.42 E-value=0.11 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|+||+||||.+..+...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988877665
No 376
>PRK03839 putative kinase; Provisional
Probab=92.40 E-value=0.11 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|+||+||||++..++..+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999877766544
No 377
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.39 E-value=2 Score=55.22 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhc---C--Cc-EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ---R--PL-SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---~--~l-~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.-++.|..||..+.. + |. -||.|--|=|||-++..++...+.. +++|.|++||-.-|.+=.+.+.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-GKQVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-GKQVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHhHHHHHHHHH
Confidence 578999999998774 2 22 5999999999999998888766664 7899999999999876554443
No 378
>PTZ00301 uridine kinase; Provisional
Probab=92.39 E-value=0.17 Score=53.80 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.+.-|.||||+||||++..++..|...
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 456799999999999998888777654
No 379
>KOG0920|consensus
Probab=92.33 E-value=0.46 Score=59.96 Aligned_cols=62 Identities=18% Similarity=0.379 Sum_probs=48.0
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHH-HHc-cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQL-VKQ-TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~L-l~~-~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
++++|..++ .+++++|.|-+|+||||=+-..+..- +.. +..+|+++-|-..||-.+++|+..
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ 241 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAK 241 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHH
Confidence 455555544 57999999999999999876665443 333 345799999999999999999975
No 380
>KOG0328|consensus
Probab=92.30 E-value=0.059 Score=58.23 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
+.-|+.||-.++...-.+.|+-.|||||.|.+.-+.+.+.. ...++|+++||...+-++.+-+...|
T Consensus 51 S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg 119 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALG 119 (400)
T ss_pred hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhc
Confidence 34699999999999999999999999999876655554443 23579999999999999988887654
No 381
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.26 E-value=0.22 Score=61.91 Aligned_cols=56 Identities=27% Similarity=0.314 Sum_probs=40.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEE-cccHH--HHHHHHHHHHhcCCeE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVC-APSNI--AVDQLTEKIHRTGLKV 575 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~-ApSN~--AvD~L~erL~~~gl~v 575 (959)
.+.++.||.|+|||||++.++..+... ++++|.++ +.+-. |++++..--...++++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 478899999999999999999887544 33577555 44444 7777766555556554
No 382
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.24 E-value=0.17 Score=52.83 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=24.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+..|.||+|+||||++..+...+ ++.++.++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCCeEEEEe
Confidence 35789999999999998877655 3445555544
No 383
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.24 E-value=0.17 Score=51.82 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.++.|+||+||||++..+...|... +..+.++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~-~~~~~~~ 41 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLK-YSNVIYL 41 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence 467899999999999998888777543 3334333
No 384
>KOG0953|consensus
Probab=92.16 E-value=0.3 Score=57.47 Aligned_cols=128 Identities=18% Similarity=0.321 Sum_probs=85.5
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHH
Q psy3251 515 HAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLA 594 (959)
Q Consensus 515 ~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~ 594 (959)
+++.+.+.+=.||-.+|||+-+...... .++=+.|.|=.-.|-++.+|+...|+..--+.+..+.....
T Consensus 187 R~~~RkIi~H~GPTNSGKTy~ALqrl~~-----aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~------ 255 (700)
T KOG0953|consen 187 RKIRRKIIMHVGPTNSGKTYRALQRLKS-----AKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLD------ 255 (700)
T ss_pred HhhhheEEEEeCCCCCchhHHHHHHHhh-----hccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCC------
Confidence 3455677888999999999966544422 34568999999999999999998877632222211100000
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEEECCCC
Q psy3251 595 LHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQ 674 (959)
Q Consensus 595 l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ 674 (959)
--..|+.+.||.....- ...|++.+|||.+|
T Consensus 256 ---------------------------------------------~~~~a~hvScTVEM~sv----~~~yeVAViDEIQm 286 (700)
T KOG0953|consen 256 ---------------------------------------------NGNPAQHVSCTVEMVSV----NTPYEVAVIDEIQM 286 (700)
T ss_pred ---------------------------------------------CCCcccceEEEEEEeec----CCceEEEEehhHHh
Confidence 01246778888765432 24899999999999
Q ss_pred CChhh---hHhhhhh--cCCeEEEEccCCCCCc
Q psy3251 675 ATEPE---CMVPVIL--GAKQLILVGDHCQLGP 702 (959)
Q Consensus 675 ~~Epe---~Lipl~~--~~krvVLVGD~~QL~P 702 (959)
+..|+ +|.-..+ .++-+-|+|||.-|+=
T Consensus 287 m~Dp~RGwAWTrALLGl~AdEiHLCGepsvldl 319 (700)
T KOG0953|consen 287 MRDPSRGWAWTRALLGLAADEIHLCGEPSVLDL 319 (700)
T ss_pred hcCcccchHHHHHHHhhhhhhhhccCCchHHHH
Confidence 99887 3333332 4678889999866543
No 385
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.16 E-value=0.16 Score=57.62 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=26.4
Q ss_pred HHHHHHH-HHhcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 508 SQVYAVK-HAIQRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 508 sQ~~AV~-~al~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+...++. ..+..+..++.||||||||..+.+++..+
T Consensus 31 ~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 31 EVIELALLALLAGGHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh
Confidence 3444333 33457889999999999999988877554
No 386
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.15 E-value=0.11 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||||||+++..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999988777643
No 387
>KOG0387|consensus
Probab=92.14 E-value=3.9 Score=50.48 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHhc---CCc-EEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhcCCe-EE
Q psy3251 504 DLNRSQVYAVKHAIQ---RPL-SLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRTGLK-VV 576 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---~~l-~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~gl~-vv 576 (959)
.|=+.|+.-|+-... ++. -+|---=|=|||--++..++.|... -.+++||+||+-.-..-+.| ++.-... -+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E-~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKE-FQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHH-HHHhCcceEE
Confidence 577889999987653 333 3444467999998887777777654 23689999997655444433 3322222 22
Q ss_pred EeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeecccc--
Q psy3251 577 RVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA-- 654 (959)
Q Consensus 577 Rl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a-- 654 (959)
++++........+....+ + .+. ....+.......|+++|-...
T Consensus 284 ~ilh~t~s~~r~~~~~~~-~-------------------------------~~~---~~L~r~~~~~~~ilitty~~~r~ 328 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSS-H-------------------------------KKD---KLLIRKVATDGGILITTYDGFRI 328 (923)
T ss_pred EEEecCCcccccccchhh-h-------------------------------hhh---hhheeeecccCcEEEEehhhhcc
Confidence 232221110000000000 0 000 001111233445666665543
Q ss_pred CCcccccCCcCEEEEECCCCCChhhhHhhhh----hcCCeEEEEccCCC
Q psy3251 655 GDPRLLKIKFHSILIDESMQATEPECMVPVI----LGAKQLILVGDHCQ 699 (959)
Q Consensus 655 ~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~----~~~krvVLVGD~~Q 699 (959)
....+.+..+++||.||+..+.-|.+=+.+. ....|+||.|-|-|
T Consensus 329 ~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQ 377 (923)
T KOG0387|consen 329 QGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQ 377 (923)
T ss_pred cCcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCcccc
Confidence 2344667789999999999998887544443 24579999999999
No 388
>KOG0390|consensus
Probab=92.13 E-value=1 Score=55.97 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhcC----------CcEEEEcCCCChHHHHHHHHHHHHHHc-cC-----CCEEEEcccHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQR----------PLSLIQGPPGTGKTVTSATIVYQLVKQ-TG-----SPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~----------~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~-----~rILV~ApSN~AvD~L~er 567 (959)
.|=+.|++.++....+ +=.++.=-||+|||......++.++++ +. .+.||+||+-. +.+-...
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sL-v~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSL-VNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHH-HHHHHHH
Confidence 4778999999876531 114556679999999999999999988 55 68999999743 3333333
Q ss_pred HHh----cCCeEEEeeccc
Q psy3251 568 IHR----TGLKVVRVCAKS 582 (959)
Q Consensus 568 L~~----~gl~vvRl~~~s 582 (959)
+.+ ..+..+.+....
T Consensus 317 F~KWl~~~~i~~l~~~~~~ 335 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTK 335 (776)
T ss_pred HHHhccccccceeeeeccc
Confidence 322 234455554433
No 389
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.13 E-value=0.098 Score=60.92 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-.|+.||||||||+++.+++..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999998777643
No 390
>PRK14532 adenylate kinase; Provisional
Probab=92.10 E-value=0.11 Score=53.81 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+|.|||||||||.+..++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999877764
No 391
>PHA02244 ATPase-like protein
Probab=92.08 E-value=0.21 Score=57.20 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHhc-CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 512 AVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 512 AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+..++. +...+|.||||||||+.+.+++..
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 455788999999999999888765
No 392
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=92.05 E-value=0.6 Score=58.77 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=35.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+.+-+-|+|||.+++..++.-+ ..+..|.|+|+|..-|.+-++.+..
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~a-l~g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNA-LTGKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred cccccCCCCchHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5566899999998766554333 3467799999999888887776653
No 393
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.04 E-value=0.21 Score=50.46 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..|.|++|||||+++..++..|..+ +.+|.++-+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecc
Confidence 4688999999999999999888654 6688777654
No 394
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.97 E-value=0.25 Score=58.01 Aligned_cols=51 Identities=27% Similarity=0.430 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|-|+||+|||+.+..++.++....+.+|++.+.= -..+++..|+..
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~~ 244 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLLA 244 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHH
Confidence 568999999999999999999988875457889988754 466777777754
No 395
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.97 E-value=0.2 Score=54.49 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=24.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.++.|+|||||||.+..+...+-.. +.++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-NIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-CCceEEE
Confidence 46899999999999999988776543 3444444
No 396
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.94 E-value=0.19 Score=57.04 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=27.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..-|.||||+||||++..++..+... +.+|.|++
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~ 91 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLA 91 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 45699999999999999999887755 66777765
No 397
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.93 E-value=0.12 Score=51.66 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=16.8
Q ss_pred EEcCCCChHHHHHHHHHHHH
Q psy3251 524 IQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 524 IqGPPGTGKT~Tia~ii~~L 543 (959)
|.||||+|||+.+..++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999988877543
No 398
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.93 E-value=0.17 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..|+||||+||||.+..++-.|-..
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4799999999999998888666554
No 399
>PRK04040 adenylate kinase; Provisional
Probab=91.91 E-value=0.13 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|+||+||||++..++..+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 57899999999999998877655
No 400
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=0.14 Score=61.28 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+..|++||||||||+++..++..|.-
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999888877653
No 401
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.86 E-value=0.15 Score=54.69 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-----CCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-----GSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-----~~rILV~ApSN 558 (959)
..++.|.||||||||+.+..++....... +.+++..+..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 46789999999999999999887644322 25666665433
No 402
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.85 E-value=0.16 Score=57.62 Aligned_cols=25 Identities=48% Similarity=0.715 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....|+.||||||||.++..++..|
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4678999999999999998888666
No 403
>PRK14527 adenylate kinase; Provisional
Probab=91.81 E-value=0.14 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.||||+||||.+..++..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988776443
No 404
>PRK13764 ATPase; Provisional
Probab=91.77 E-value=0.21 Score=60.87 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
....||.|||||||||++.+++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 566899999999999999998877653
No 405
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=91.77 E-value=6.3 Score=50.21 Aligned_cols=57 Identities=28% Similarity=0.592 Sum_probs=44.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH---HHHHHHHhcC---CeEEEe
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD---QLTEKIHRTG---LKVVRV 578 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD---~L~erL~~~g---l~vvRl 578 (959)
.-+|-|-.|||||+.+.+-+...++. +++|..++|+-..-. ++++++...| +.|.|+
T Consensus 3 m~~lyg~~gtgkT~~l~~e~~~~~~~-gkpviyIvP~q~sFe~E~~~L~~~~~~g~~~i~V~~F 65 (1108)
T COG3857 3 MQLLYGRAGTGKTEILTEEIQEELEK-GKPVIYIVPSQMSFEKEKEILERLRQGGSFRIQVTRF 65 (1108)
T ss_pred eeeehhhccccHHHHHHHHHHHHHHc-CCcEEEEcccchhHHHHHHHHhCcccCCeeeEEEEEH
Confidence 34788999999999999999888876 589999999876554 6666666655 456654
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.77 E-value=0.12 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=17.1
Q ss_pred EEEcCCCChHHHHHHHHHHHH
Q psy3251 523 LIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~L 543 (959)
+|.|||||||||++..+...+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 678999999998887777544
No 407
>PLN02200 adenylate kinase family protein
Probab=91.77 E-value=0.13 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.|||||||||.+..++..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998877743
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.76 E-value=0.16 Score=55.85 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=28.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..=|+|+||.||+|++-.++.+|... +.||-|+|
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlA 86 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRER-GHRVAVLA 86 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEE
Confidence 34589999999999999999998776 67776665
No 409
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.74 E-value=0.12 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=17.6
Q ss_pred EEcCCCChHHHHHHHHHHHHHH
Q psy3251 524 IQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 524 IqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
|.||||+||||.+..+..++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6799999999998888866543
No 410
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.74 E-value=0.14 Score=57.53 Aligned_cols=26 Identities=46% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..-.||.||||||||..+..++..|=
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35689999999999999988887763
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.74 E-value=0.14 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.||||+||||++..+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999998776553
No 412
>KOG1533|consensus
Probab=91.72 E-value=0.15 Score=54.18 Aligned_cols=32 Identities=34% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
-+|.||||+||||-....-.-+... +.++.++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~-gr~~~vV 36 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAI-GRPVAVV 36 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHh-CCceEEE
Confidence 3789999999999887776444443 4554444
No 413
>PRK02496 adk adenylate kinase; Provisional
Probab=91.71 E-value=0.14 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.||||+|||+++..++..+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999988776443
No 414
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.71 E-value=0.25 Score=55.27 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=23.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..|+.||||||||+++.+++..|...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 48999999999999999999888754
No 415
>KOG1970|consensus
Probab=91.70 E-value=0.12 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=22.4
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 517 IQRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 517 l~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+...+.||+||+|+|||||+..+...+
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 346789999999999999987777554
No 416
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.68 E-value=0.24 Score=51.12 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=24.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+..|.|+|||||||++..++..+-.. +.++.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~-~~~~~~i 33 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN-GIGPVVI 33 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 35799999999999998888666543 3444444
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.68 E-value=0.22 Score=57.31 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH-HccCCCEEEEcc-c--HHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV-KQTGSPVLVCAP-S--NIAVDQLT 565 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~~~rILV~Ap-S--N~AvD~L~ 565 (959)
.++..+.||.|-|||||++.+++... .....+|-+++- | --|+.+|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk 253 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK 253 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH
Confidence 57889999999999999999998877 334566655542 2 33555553
No 418
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.67 E-value=0.27 Score=47.12 Aligned_cols=44 Identities=34% Similarity=0.539 Sum_probs=31.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.+++|.+|+|||++...++..+.+. +.+|+++---. +.+.+++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~---~~~~~~~~ 45 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP---DDLPERLS 45 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc---hhhHHHHh
Confidence 5789999999999999998888764 66776554222 55555554
No 419
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.66 E-value=0.15 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|.|+||||||+++..+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999988877554
No 420
>KOG0733|consensus
Probab=91.66 E-value=0.11 Score=61.85 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.|++||||||||..+-+++.+|
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhc
Confidence 6899999999999998888665
No 421
>PRK14528 adenylate kinase; Provisional
Probab=91.63 E-value=0.15 Score=53.05 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+|||+++..++..
T Consensus 4 i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999998776543
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.60 E-value=0.16 Score=52.00 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+.++.||||+||||++..+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999998877654
No 423
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.60 E-value=0.23 Score=53.10 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
.-|.||+|+||||++..++..|... .+.+|.++..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~ 37 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITT 37 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEec
Confidence 4588999999999998777655431 2345665543
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.58 E-value=0.27 Score=55.93 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred HHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 510 VYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 510 ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
...+..+.. ....+|.||+||||||++.+++..+- ...||+++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip--~~~ri~ti 193 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIP--AIERLITV 193 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC--CCCeEEEe
Confidence 344444443 67789999999999999988775542 23555553
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.56 E-value=0.28 Score=48.29 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.++.|+.|+|||+.+..++..|- ..--|.+||
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg----~~~~v~SPT 56 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG----IQGNVTSPT 56 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC----CCCcccCCC
Confidence 45788999999999999988886652 122366666
No 426
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.54 E-value=0.23 Score=56.99 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=36.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCC---CEEEEcccHHHHHHHHHHHHh
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGS---PVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~---rILV~ApSN~AvD~L~erL~~ 570 (959)
-.+|.||||||||+++..++..+..+.+. -++++.....-+.++.+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 35999999999999999998888765222 245566666677777777653
No 427
>KOG0731|consensus
Probab=91.53 E-value=0.12 Score=63.63 Aligned_cols=19 Identities=53% Similarity=0.936 Sum_probs=16.8
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.|+.||||||||..+.+++
T Consensus 347 vLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred eEEECCCCCcHHHHHHHHh
Confidence 5889999999999887777
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.53 E-value=0.23 Score=52.40 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+..|.||+||||||++..+...+ +...+.++.
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l---~~~~~~~i~ 39 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL---GDESIAVIP 39 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh---CCCceEEEe
Confidence 467899999999999987777655 233444443
No 429
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.51 E-value=0.2 Score=52.05 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=36.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHHHHHHh-cCCeEEEee
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLTEKIHR-TGLKVVRVC 579 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~erL~~-~gl~vvRl~ 579 (959)
.-|-||||+|||+++-..+..|... .++.|++ .|+.-+ +++.+ .+.+++-+.
T Consensus 16 i~v~Gp~GSGKTaLie~~~~~L~~~--~~~aVI~~Di~t~~Da----~~l~~~~g~~i~~v~ 71 (202)
T COG0378 16 IGVGGPPGSGKTALIEKTLRALKDE--YKIAVITGDIYTKEDA----DRLRKLPGEPIIGVE 71 (202)
T ss_pred EEecCCCCcCHHHHHHHHHHHHHhh--CCeEEEeceeechhhH----HHHHhCCCCeeEEec
Confidence 4578999999999999999888765 6777775 344434 44444 666665543
No 430
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.48 E-value=0.14 Score=58.40 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|+||||||||..+.+++..+
T Consensus 150 gllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc
Confidence 46899999999999887777554
No 431
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.48 E-value=0.17 Score=60.84 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|+.||||||||+++..++..+..
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3499999999999999888877654
No 432
>PRK07261 topology modulation protein; Provisional
Probab=91.40 E-value=0.16 Score=52.13 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+|.|+||+||||.+..+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999877653
No 433
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.40 E-value=0.6 Score=53.26 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCcCEEEEECCCCCChhh--hHhhhhh---cCCeEEEEccC-CCCCceeech
Q psy3251 662 IKFHSILIDESMQATEPE--CMVPVIL---GAKQLILVGDH-CQLGPVVMCK 707 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe--~Lipl~~---~~krvVLVGD~-~QL~Pvv~s~ 707 (959)
..++++|||+|..+++.. +|+...- ....+||+... .+|.|++.|.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 368999999998888654 4554442 23456776664 6799988764
No 434
>KOG0651|consensus
Probab=91.39 E-value=0.13 Score=56.59 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|+||||||||..+-.++..+
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhc
Confidence 47899999999999876666544
No 435
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.39 E-value=0.31 Score=53.24 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|-|+||.|||+.+..++.+++...+.+||+.+.=.. .+++..|+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~-~~~l~~R~l 68 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS-EEELAARLL 68 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS--HHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHH
Confidence 45899999999999999999999999876689999987443 345666654
No 436
>PRK07667 uridine kinase; Provisional
Probab=91.39 E-value=0.26 Score=51.45 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
-+..|.|+||+||||++..+...|-.. +.++.++..-+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~-~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEEcCc
Confidence 356799999999999998888666543 44555554433
No 437
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=91.37 E-value=0.79 Score=57.77 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=36.4
Q ss_pred EcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEE
Q psy3251 525 QGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVR 577 (959)
Q Consensus 525 qGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvR 577 (959)
.=.-|.|||.+++..++ +....+..|.|+|+|..-|..=++.+.. .|+++--
T Consensus 101 EM~TGEGKTLvA~l~a~-l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 101 EMRTGEGKTLVGTLAVY-LNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred cccCCCCChHHHHHHHH-HHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 33789999997655554 3334588999999999888777776654 3555443
No 438
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.36 E-value=0.15 Score=60.97 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.|+.||||||||.++.+++..+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999887776543
No 439
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.33 E-value=0.27 Score=50.26 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=25.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.+|.|+||+|||+++..++..+... +.++.++
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~-g~~v~~i 38 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREA-GYPVEVL 38 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 467899999999999999888777543 4455544
No 440
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.30 E-value=0.17 Score=52.89 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.-|.||+|+||||++..++..|-+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4689999999999998888766544
No 441
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=91.27 E-value=0.7 Score=57.81 Aligned_cols=53 Identities=26% Similarity=0.292 Sum_probs=37.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEE
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVV 576 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vv 576 (959)
+.+=.-|.|||.+++..++..+. .+..|-|+|||..-|.+=++.+.. .|+.+-
T Consensus 97 iaEm~TGEGKTLvA~l~a~l~al-~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg 153 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYLNAL-TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVG 153 (796)
T ss_pred cccccCCCCCcHHHHHHHHHHHH-cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEE
Confidence 44557999999997766654444 488999999998877766665543 466554
No 442
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.25 E-value=0.16 Score=53.84 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+||||++..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 588999999999987766643
No 443
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=91.22 E-value=0.7 Score=58.06 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=38.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEE
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVR 577 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvR 577 (959)
+.+-.-|+|||.+++..++...- .+..|-|+|||..-|.+-++.+.. .|+++.-
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 66778999999987665542222 366799999999988888877654 3555543
No 444
>KOG0727|consensus
Probab=91.20 E-value=0.2 Score=53.50 Aligned_cols=19 Identities=47% Similarity=0.913 Sum_probs=16.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.|+.||||||||..+.+.+
T Consensus 192 vllygppg~gktml~kava 210 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVA 210 (408)
T ss_pred eEEeCCCCCcHHHHHHHHh
Confidence 6899999999998876665
No 445
>PRK06696 uridine kinase; Validated
Probab=91.17 E-value=0.27 Score=52.61 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=25.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+..|.|||||||||++..++..|-.. +.++++++
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~ 57 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKR-GRPVIRAS 57 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEec
Confidence 357799999999999998888766443 34454433
No 446
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.17 E-value=0.14 Score=61.43 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=23.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
-.|+.||||||||+++.+++..+ +.+++.+..+
T Consensus 90 giLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 122 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEA----GVPFFSISGS 122 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc----CCCeeeccHH
Confidence 37899999999999988876442 3455555433
No 447
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.12 E-value=0.26 Score=56.23 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 506 N~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
++...+.+...+.+ +..|+.||||+|||+++..++..+.-
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44555555555532 35789999999999999888877653
No 448
>PHA00547 hypothetical protein
Probab=91.02 E-value=0.29 Score=52.70 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 508 SQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 508 sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+|.+-|+.+-++|+++|+||=|||||..+.-++.+.-
T Consensus 64 ~~~k~VK~ik~spis~i~G~LGsGKTlLMT~LA~~~K 100 (337)
T PHA00547 64 NAFRLVNFIWDNPLSVIIGKLGTGKTLLLTYLSQTMK 100 (337)
T ss_pred HHHHHHHHHhcCCceEEeccCCCchhHHHHHHHHHHH
Confidence 4556666677899999999999999998877765443
No 449
>KOG0926|consensus
Probab=91.01 E-value=0.67 Score=56.67 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
-+-++|+ .+.++-.+++++|.|--|+||||-+=..++..=-. .++-|-|+-|-..||-.+++|+..
T Consensus 257 I~aeEq~-IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~ 327 (1172)
T KOG0926|consen 257 IVAEEQR-IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAF 327 (1172)
T ss_pred hhHHHHH-HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHH
Confidence 3445554 44555568999999999999999876666543111 234588999999999999999863
No 450
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=90.99 E-value=0.35 Score=48.89 Aligned_cols=55 Identities=20% Similarity=0.397 Sum_probs=34.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc--HHHHHHHHHHHHhcCCeEEEee
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS--NIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS--N~AvD~L~erL~~~gl~vvRl~ 579 (959)
|+++|.|+.|+|||+++..++... .+.++.++... ...+|. ..+.+.+..++.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~---~~~~~~~i~~~~G~~~~d~--~~~~~~~~~v~~l~ 57 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ---HGRKIAVIENEFGEVGIDN--QLVVDTDEEIIEMN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc---cCCcEEEEecCCCccchhH--HHHhCCCceEEEeC
Confidence 578999999999999998777542 24566555443 344443 33334444555543
No 451
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.93 E-value=0.17 Score=53.47 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+|.||||+||||.+..++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999998877663
No 452
>KOG0738|consensus
Probab=90.85 E-value=0.15 Score=57.67 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.|..||||||||..+.+++-.. + ++|=|+..-.|+.+..
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc----~-----tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATEC----G-----TTFFNVSSSTLTSKWR 286 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhh----c-----CeEEEechhhhhhhhc
Confidence 6889999999998877666322 1 5666777767766544
No 453
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=90.85 E-value=0.29 Score=54.09 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=22.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
|+.+|.|.||+|||+.+..+...+-. .+.++.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-KGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEc
Confidence 67899999999999888777766555 355565555
No 454
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.81 E-value=0.68 Score=51.45 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 506 NRSQVYAVKHAIQ-R--PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 506 N~sQ~~AV~~al~-~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
|+......+..+. . .+.-|.|+||+||||++..++..|... .++.|+.---... +=+++|...|.+++-+..
T Consensus 88 n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~~~VI~gD~~t~-~Da~rI~~~g~pvvqi~t 162 (290)
T PRK10463 88 NNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VPCAVIEGDQQTV-NDAARIRATGTPAIQVNT 162 (290)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CCEEEECCCcCcH-HHHHHHHhcCCcEEEecC
Confidence 4444444444443 2 345589999999999999998777543 4566654222111 236678888888776643
No 455
>PRK05439 pantothenate kinase; Provisional
Probab=90.80 E-value=0.3 Score=54.92 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=24.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~A 555 (959)
+..|.||||+||||++..+...|-.. .+.+|.+++
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 35699999999999998777654333 234566555
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.78 E-value=0.24 Score=56.57 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 508 SQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 508 sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
.....+..+.. +...+|.||+||||||++.+++..+- +..+|+.+=.
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~--~~~rivtiEd 197 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP--PQERLITIED 197 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccC--CCCCEEEECC
Confidence 34444444443 67789999999999999988775542 2456655433
No 457
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=90.78 E-value=0.29 Score=55.09 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHhc-----------CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 503 PDLNRSQVYAVKHAIQ-----------RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-----------~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|+++|++++...+. ....+|.|+||+|||++...++..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999988887663 3467889999999999987776544
No 458
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.78 E-value=0.31 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=20.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.+|.|+||||||+.+..+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999888877654
No 459
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.75 E-value=0.3 Score=55.14 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-----CCCEEEEcccH-HHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-----GSPVLVCAPSN-IAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-----~~rILV~ApSN-~AvD~L~erL~~ 570 (959)
..+++|.||||||||+++..+++...... +.+++.+..-+ .-.+.|.+...+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 46789999999999999999987765321 23566655433 234555544433
No 460
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.71 E-value=0.29 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+-.|+.||||||||+++..+...|
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHC
Confidence 569999999999999887776443
No 461
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.71 E-value=0.3 Score=53.38 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=30.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+.++.|.||+|||++++.++..+.+. +.|||++.-
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~ 36 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVST 36 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeC
Confidence 57889999999999999999888876 678888753
No 462
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.67 E-value=0.19 Score=51.74 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=23.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.+++++|.||-|||||+++-++.+.|..
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4689999999999999999777766643
No 463
>KOG0343|consensus
Probab=90.64 E-value=0.72 Score=54.33 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHc-----cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 501 NLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+..+++-|++.|-.+|+..=.|=.+-.|||||-. ++-++.+|... .+--.||++||...|-++.+-|.+.
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kv 164 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKV 164 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHH
Confidence 35578999999999999887777778899999976 55566667665 2446999999999999998877653
No 464
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.64 E-value=0.21 Score=51.70 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+||||.+..++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999998888765
No 465
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.60 E-value=0.35 Score=51.15 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.|.|-.|+||||+++.+++.|.+. ++|||++
T Consensus 4 av~gKGGvGKTt~~~nLA~~la~~-G~rvLli 34 (212)
T cd02117 4 AIYGKGGIGKSTTSQNLSAALAEM-GKKVLQV 34 (212)
T ss_pred EEECCCcCcHHHHHHHHHHHHHHC-CCcEEEE
Confidence 455999999999999999999986 7788887
No 466
>PTZ00202 tuzin; Provisional
Probab=90.58 E-value=1.1 Score=52.20 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH-hcCC
Q psy3251 507 RSQVYAVKHAIQ------RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH-RTGL 573 (959)
Q Consensus 507 ~sQ~~AV~~al~------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~-~~gl 573 (959)
+.+..++..++. ..+.+|.||+|+|||+++..++..+ +...++.-+. ..+++...+. .+|+
T Consensus 268 eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~~~qL~vNpr--g~eElLr~LL~ALGV 335 (550)
T PTZ00202 268 EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----GMPAVFVDVR--GTEDTLRSVVKALGV 335 (550)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----CceEEEECCC--CHHHHHHHHHHHcCC
Confidence 345566666663 2488999999999999988877443 2334555444 3355555544 3443
No 467
>PRK06547 hypothetical protein; Provisional
Probab=90.57 E-value=0.21 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.||+|||||+++..++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999998777754
No 468
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=90.54 E-value=0.63 Score=55.06 Aligned_cols=78 Identities=27% Similarity=0.381 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHH-HHHHHHHccCCCEEEEccc----HHHHHHHHHHHHhcCCeE
Q psy3251 502 LPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSAT-IVYQLVKQTGSPVLVCAPS----NIAVDQLTEKIHRTGLKV 575 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~~~rILV~ApS----N~AvD~L~erL~~~gl~v 575 (959)
...|-+-|..||++.|- ..-.+|..+.+||||-+.-. =+-.++. .+++.|.+.|- |.--+.+.+|..+.|+++
T Consensus 214 ~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rYs~Lglkv 292 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERYSKLGLKV 292 (830)
T ss_pred cceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHhhcccceE
Confidence 45788999999999775 44567778899999987522 2334444 37788887775 444466778888888887
Q ss_pred -EEeec
Q psy3251 576 -VRVCA 580 (959)
Q Consensus 576 -vRl~~ 580 (959)
+|+|.
T Consensus 293 airVG~ 298 (830)
T COG1202 293 AIRVGM 298 (830)
T ss_pred EEEech
Confidence 88875
No 469
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.54 E-value=0.87 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
...+|.||||+||||++..++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3579999999999999988875443
No 470
>PRK13947 shikimate kinase; Provisional
Probab=90.54 E-value=0.22 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|+||||||+++..++..|
T Consensus 4 I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999987776544
No 471
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.50 E-value=0.57 Score=47.57 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH-----HHHHHHHhcCCeEEEeec
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD-----QLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD-----~L~erL~~~gl~vvRl~~ 580 (959)
+..|.|++|||||+++..++..|-.. +.+|-++-+.+...+ .-..++.+.|...+-+.+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~-g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa~~v~~~~ 66 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSAR-GLRVAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSS 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEecCCcccccCccchHHHHHHcCCCEEEEec
Confidence 56789999999999999999877554 566766654333222 223455556666555544
No 472
>COG3911 Predicted ATPase [General function prediction only]
Probab=90.46 E-value=0.2 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.+.+++|+||.|||+.++++.
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa 30 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALA 30 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHH
Confidence 478999999999999987766
No 473
>PRK08760 replicative DNA helicase; Provisional
Probab=90.41 E-value=0.4 Score=57.28 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++|-|.||.|||+++..++..++...+.+|++.+.=.. .+++..|+...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs-~~ql~~Rl~a~ 280 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISS 280 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC-HHHHHHHHHHh
Confidence 56899999999999999999998887655678988876443 46777787653
No 474
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=90.40 E-value=1.1 Score=55.77 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHhc---CC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQ---RP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~---~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..++..|..++..... ++ -.+|.|.+|+|||.+++.++.. .+.++||++|+...+.++.+.|...
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~----~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIAR----LQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHH----hCCCEEEEECCHHHHHHHHHHHHHh
Confidence 3578889888887643 22 4679999999999998875533 3578999999999999999999765
No 475
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.36 E-value=0.19 Score=54.19 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
...|..||||||||.++.+++
T Consensus 152 knVLFyGppGTGKTm~Akala 172 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALA 172 (368)
T ss_pred ceeEEECCCCccHHHHHHHHh
Confidence 457889999999999877665
No 476
>KOG1942|consensus
Probab=90.30 E-value=0.23 Score=54.19 Aligned_cols=25 Identities=44% Similarity=0.694 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..|+.||||||||..+.++...|
T Consensus 64 GravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHh
Confidence 5778999999999999888887655
No 477
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.29 E-value=1 Score=55.91 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHhc---CC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 506 NRSQVYAVKHAIQ---RP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 506 N~sQ~~AV~~al~---~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.-.|..|+..... .+ ..++.|.+|||||.|++.++..+ +.++||+|++...+.+|.+-|...
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHh
Confidence 4568888877543 22 55799999999999998877543 578999999999999999998765
No 478
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.26 E-value=0.33 Score=54.59 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN 558 (959)
..+++|.||||||||+.+..++...... .+.+++.+..-.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4578999999999999999887665421 123666665433
No 479
>PRK05595 replicative DNA helicase; Provisional
Probab=90.20 E-value=0.46 Score=56.29 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|-|.||.|||+++..++.++....+.+|++.+.= -..+++..|+..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a 251 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLC 251 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHH
Confidence 468899999999999999999988765457889988763 366777788754
No 480
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.14 E-value=0.37 Score=49.60 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
.++..|.|++||||||++..++..|... +.+|-++-++.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~-g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCAR-GIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhc-CCeEEEEEEcC
Confidence 4578899999999999999999777543 45666665433
No 481
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=90.13 E-value=0.35 Score=55.02 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
+.++.|+||+||||++..+...|....+.+|.+++.-.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 46789999999999999988887654567788877543
No 482
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.13 E-value=0.26 Score=59.58 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..|++||||||||+++..++..|.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999988887765
No 483
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.11 E-value=0.37 Score=54.15 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=36.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc--ccHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA--PSNIAVDQLTEK 567 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A--pSN~AvD~L~er 567 (959)
++.++.|.-|+||||++++.+.++.+. +.|+|+++ |.+...|-+-.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~~L~d~l~~~ 50 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAHSLSDVLGQK 50 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTTHHHHHHTS-
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCccHHHHhCCc
Confidence 467899999999999999999998886 78899984 556666655443
No 484
>PRK09087 hypothetical protein; Validated
Probab=90.11 E-value=0.55 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
++..+|+||+|+|||+.+..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999887544
No 485
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.10 E-value=0.27 Score=57.34 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=25.3
Q ss_pred HHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 510 VYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 510 ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+.+..++.+ ...|++||||+|||+++..++..|.
T Consensus 25 ~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 25 TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344444443 2478999999999999988887665
No 486
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.03 E-value=0.52 Score=48.87 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.+|.|+||+||||.+..+..++-.. +.+++++
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~-g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN-GYDVLFT 37 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 467899999999999998888776553 4456544
No 487
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.01 E-value=0.27 Score=59.72 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|++||||||||+++..++..|.-
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999988877754
No 488
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=90.00 E-value=0.55 Score=50.55 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=41.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH---HHHHHHHhcCCeEEEeec
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD---QLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD---~L~erL~~~gl~vvRl~~ 580 (959)
+.-|.|++|+|||+++..++..|... +.+|.++-+++.-.| .=..|+.+.|..++-+.+
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~-G~~V~viK~~~~~~d~~~~Dt~r~~~aGA~~v~~~~ 64 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKER-GYRVATAKHTHHEFDKPDTDTYRFKKAGAEVVVVST 64 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhC-CCeEEEEEecccCCCCCCchHHHHHHcCCcEEEEec
Confidence 45689999999999999999887654 779999865554333 223455566666555443
No 489
>KOG0389|consensus
Probab=89.98 E-value=2 Score=52.74 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHh---cCCcE-EEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhcC--CeEE
Q psy3251 504 DLNRSQVYAVKHAI---QRPLS-LIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRTG--LKVV 576 (959)
Q Consensus 504 ~LN~sQ~~AV~~al---~~~l~-LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~g--l~vv 576 (959)
.|-+.|.--|.-.. ...+. ++---=|=|||--+.+..+.|.+. .+++-||++|+-.- +|-..-+.+-. ++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEE
Confidence 47788887776533 34554 444478999998877777677665 45689999997643 33333344422 2222
Q ss_pred EeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCC
Q psy3251 577 RVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGD 656 (959)
Q Consensus 577 Rl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~ 656 (959)
-.++.. ...+. ++... ..--...+|+++|-.-++.
T Consensus 478 ~YyGSq-----------------------------------------~ER~~---lR~~i-~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 478 PYYGSQ-----------------------------------------DERRE---LRERI-KKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred eccCcH-----------------------------------------HHHHH---HHHHH-hccCCCccEEEEEeecccC
Confidence 222100 00000 00111 1112378899998655443
Q ss_pred c-----ccccCCcCEEEEECCCCCChhh-----hHhhhhhcCCeEEEEccCCC
Q psy3251 657 P-----RLLKIKFHSILIDESMQATEPE-----CMVPVILGAKQLILVGDHCQ 699 (959)
Q Consensus 657 ~-----~l~~~~fd~VIIDEAsQ~~Epe-----~Lipl~~~~krvVLVGD~~Q 699 (959)
. .++..+|++||.||+.++--.. -|+.+. ...|+.|.|-|-|
T Consensus 513 ~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~-An~RlLLTGTPLQ 564 (941)
T KOG0389|consen 513 SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSIN-ANFRLLLTGTPLQ 564 (941)
T ss_pred ChHHHHHHHhccccEEEecchhhhhccchHHHHHhcccc-ccceEEeeCCccc
Confidence 2 2677899999999998764432 233332 4579999999999
No 490
>PRK05748 replicative DNA helicase; Provisional
Probab=89.97 E-value=0.51 Score=56.00 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+.+|-|+||+|||+.+..++.+.+...+.+|++.+.-. ..+++..|+.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEm-s~~~l~~R~l 252 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM-GAESLVMRML 252 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCC-CHHHHHHHHH
Confidence 4689999999999999999999988765577899887644 4456777764
No 491
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.96 E-value=0.27 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.||||+|||+++..+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999988887554
No 492
>PHA02624 large T antigen; Provisional
Probab=89.96 E-value=0.25 Score=59.60 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 510 VYAVKHAIQ----RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 510 ~~AV~~al~----~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+++..+. +...++.||||||||+.+.+++..|
T Consensus 418 ~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 418 YDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 344444443 4688999999999999998888655
No 493
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.95 E-value=0.42 Score=53.81 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 503 PDLNRSQVYAVKHAIQRP-LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~-l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+++.|...+..+.... -.||.|+-||||||++-++....- +..||+.+=-|
T Consensus 156 gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~--~~eRvItiEDt 209 (355)
T COG4962 156 GTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID--SDERVITIEDT 209 (355)
T ss_pred CCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC--CcccEEEEeeh
Confidence 358899999999888765 689999999999999988775543 34577777553
No 494
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.91 E-value=0.26 Score=53.13 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+||||.+..++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999988776643
No 495
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.90 E-value=0.43 Score=49.17 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=25.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+|.||+|+||||.+..+..+|-.. +.++.++
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~-g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR-GYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 46789999999999999988777543 4555544
No 496
>PF13479 AAA_24: AAA domain
Probab=89.66 E-value=0.26 Score=52.31 Aligned_cols=26 Identities=42% Similarity=0.692 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
.+|.||||+|||+++..+ .++|++..
T Consensus 6 ~lIyG~~G~GKTt~a~~~---------~k~l~id~ 31 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL---------PKPLFIDT 31 (213)
T ss_pred EEEECCCCCCHHHHHHhC---------CCeEEEEe
Confidence 689999999999987666 46666655
No 497
>KOG0344|consensus
Probab=89.64 E-value=0.96 Score=53.78 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHH-HHHHHHHHHHc------cCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT-SATIVYQLVKQ------TGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~------~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
-++.|++|+-..+...-.+.++|-|+|||.. ..-++.+|... .+-+.+|++|+..-+.++.....++.+
T Consensus 159 Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 159 PTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 3568999999999999999999999999654 34455555443 235789999999988888777766543
No 498
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=89.64 E-value=0.27 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+..|+.||||||||+++..++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 466899999999999998777644
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=89.62 E-value=0.23 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.++.|||||||||.+..++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 357889999999999988876554
No 500
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.60 E-value=0.45 Score=54.81 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 507 ~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+...+.+...+.+ +..|+.||||+|||+++..++..+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 23 SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555555542 3688999999999998887765554
Done!