Query psy3251
Match_columns 959
No_of_seqs 493 out of 2624
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:19:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 100.0 5E-172 2E-176 1581.1 72.9 799 95-948 2-800 (800)
2 2xzl_A ATP-dependent helicase 100.0 8E-170 3E-174 1563.4 71.5 795 95-948 7-802 (802)
3 2gk6_A Regulator of nonsense t 100.0 5E-102 2E-106 941.2 54.6 624 270-948 1-624 (624)
4 4b3f_X DNA-binding protein smu 100.0 4.4E-84 1.5E-88 787.6 56.1 530 387-935 78-637 (646)
5 3e1s_A Exodeoxyribonuclease V, 100.0 3.3E-30 1.1E-34 308.3 18.2 290 503-913 188-544 (574)
6 3lfu_A DNA helicase II; SF1 he 100.0 1.7E-29 5.8E-34 307.1 21.2 309 503-841 8-367 (647)
7 1pjr_A PCRA; DNA repair, DNA r 99.9 8.3E-28 2.8E-32 296.0 14.9 305 503-841 10-371 (724)
8 3upu_A ATP-dependent DNA helic 99.9 3.2E-27 1.1E-31 276.1 18.8 244 500-843 21-274 (459)
9 1w36_D RECD, exodeoxyribonucle 99.9 2.1E-27 7.2E-32 286.5 15.3 343 506-912 151-585 (608)
10 1uaa_A REP helicase, protein ( 99.9 2.4E-26 8.3E-31 281.0 21.3 302 504-835 2-356 (673)
11 3vkw_A Replicase large subunit 99.9 1.8E-21 6.3E-26 222.8 18.9 272 519-928 161-435 (446)
12 3u4q_A ATP-dependent helicase/ 99.8 7E-21 2.4E-25 246.5 19.1 67 502-570 8-79 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.8 2.3E-17 7.9E-22 213.0 24.0 167 663-840 377-570 (1180)
14 3dmn_A Putative DNA helicase; 99.5 2E-14 7E-19 145.9 12.2 146 733-910 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 99.3 2.2E-11 7.6E-16 157.4 20.8 155 664-845 202-367 (1166)
16 2fz4_A DNA repair protein RAD2 98.7 7.8E-08 2.7E-12 102.1 14.4 73 503-579 92-165 (237)
17 1rif_A DAR protein, DNA helica 98.7 6.3E-08 2.1E-12 105.2 12.8 124 504-679 113-241 (282)
18 3b6e_A Interferon-induced heli 98.7 4.2E-08 1.4E-12 101.1 10.2 76 503-578 32-116 (216)
19 2gxq_A Heat resistant RNA depe 98.7 1E-07 3.5E-12 97.8 12.5 69 503-571 22-95 (207)
20 1vec_A ATP-dependent RNA helic 98.6 6.8E-08 2.3E-12 99.2 9.0 70 502-571 23-94 (206)
21 1qde_A EIF4A, translation init 98.6 1.9E-07 6.4E-12 97.3 11.8 69 503-571 35-105 (224)
22 2pl3_A Probable ATP-dependent 98.6 2.3E-07 7.8E-12 97.7 12.1 71 502-572 45-121 (236)
23 1t6n_A Probable ATP-dependent 98.6 3.2E-07 1.1E-11 95.3 12.7 69 503-571 35-105 (220)
24 3ber_A Probable ATP-dependent 98.6 4.3E-07 1.5E-11 96.9 13.7 76 503-578 64-145 (249)
25 3iuy_A Probable ATP-dependent 98.6 2.2E-07 7.4E-12 97.3 11.1 68 504-571 42-117 (228)
26 1wrb_A DJVLGB; RNA helicase, D 98.5 1.3E-06 4.3E-11 93.0 16.5 72 500-571 41-123 (253)
27 3ly5_A ATP-dependent RNA helic 98.5 4.7E-07 1.6E-11 97.4 12.5 69 503-571 75-149 (262)
28 1hv8_A Putative ATP-dependent 98.5 5.2E-07 1.8E-11 100.2 12.8 69 503-571 27-97 (367)
29 3bor_A Human initiation factor 98.5 3.3E-07 1.1E-11 96.8 10.6 68 504-571 52-121 (237)
30 1wp9_A ATP-dependent RNA helic 98.5 5.5E-07 1.9E-11 103.3 13.1 67 504-571 9-75 (494)
31 2oca_A DAR protein, ATP-depend 98.5 6.7E-07 2.3E-11 105.1 13.8 124 504-679 113-241 (510)
32 2oxc_A Probable ATP-dependent 98.5 6.5E-07 2.2E-11 94.0 12.2 69 503-571 45-115 (230)
33 3fe2_A Probable ATP-dependent 98.5 8.6E-07 2.9E-11 93.8 13.2 77 502-578 49-136 (242)
34 1q0u_A Bstdead; DEAD protein, 98.4 3.6E-07 1.2E-11 95.1 9.0 69 503-571 25-95 (219)
35 2z0m_A 337AA long hypothetical 98.4 1.3E-06 4.5E-11 95.9 13.7 65 503-571 15-79 (337)
36 3dkp_A Probable ATP-dependent 98.4 6.7E-07 2.3E-11 94.6 10.8 69 503-571 50-121 (245)
37 1s2m_A Putative ATP-dependent 98.4 9.9E-07 3.4E-11 99.8 11.9 70 502-571 41-112 (400)
38 2fwr_A DNA repair protein RAD2 98.4 9.6E-07 3.3E-11 102.7 11.9 73 503-579 92-165 (472)
39 1xti_A Probable ATP-dependent 98.4 1.6E-06 5.6E-11 97.4 12.8 76 503-578 29-111 (391)
40 1fuu_A Yeast initiation factor 98.4 1.1E-06 3.8E-11 98.8 11.4 69 503-571 42-112 (394)
41 3oiy_A Reverse gyrase helicase 98.4 1.4E-06 4.9E-11 99.3 12.3 75 504-579 21-98 (414)
42 3pey_A ATP-dependent RNA helic 98.3 1.9E-06 6.6E-11 96.6 12.6 69 503-571 26-98 (395)
43 3h1t_A Type I site-specific re 98.3 1.3E-06 4.4E-11 104.8 11.8 71 503-573 177-261 (590)
44 2j0s_A ATP-dependent RNA helic 98.3 2.8E-06 9.5E-11 96.5 12.7 68 504-571 59-128 (410)
45 3tbk_A RIG-I helicase domain; 98.3 2.3E-06 8E-11 100.7 12.1 77 504-580 4-88 (555)
46 3eiq_A Eukaryotic initiation f 98.3 2.4E-06 8.2E-11 96.8 11.4 69 503-571 61-131 (414)
47 2i4i_A ATP-dependent RNA helic 98.3 5.5E-06 1.9E-10 94.0 14.3 69 503-571 36-124 (417)
48 4a2p_A RIG-I, retinoic acid in 98.3 3.7E-06 1.3E-10 99.2 13.2 78 503-580 6-91 (556)
49 3fht_A ATP-dependent RNA helic 98.2 4.9E-06 1.7E-10 94.1 12.5 70 502-571 45-118 (412)
50 2ykg_A Probable ATP-dependent 98.2 5.9E-06 2E-10 100.8 12.5 79 502-580 11-97 (696)
51 2zpa_A Uncharacterized protein 98.2 3.7E-06 1.3E-10 101.0 9.9 157 504-751 175-335 (671)
52 2va8_A SSO2462, SKI2-type heli 98.2 4.2E-06 1.4E-10 102.7 10.7 76 502-577 28-107 (715)
53 4a2q_A RIG-I, retinoic acid in 98.1 6.1E-06 2.1E-10 102.6 12.0 79 502-580 246-332 (797)
54 3l9o_A ATP-dependent RNA helic 98.1 1.5E-05 5.1E-10 102.1 14.6 71 503-574 183-253 (1108)
55 3fmo_B ATP-dependent RNA helic 98.1 1.1E-05 3.7E-10 88.6 11.6 69 503-571 113-185 (300)
56 1gm5_A RECG; helicase, replica 98.1 1.5E-05 5.3E-10 98.2 14.1 74 504-578 368-451 (780)
57 4gl2_A Interferon-induced heli 98.1 3E-06 1E-10 103.4 7.2 76 504-579 7-91 (699)
58 2zj8_A DNA helicase, putative 98.1 4.4E-06 1.5E-10 102.6 8.8 77 502-578 21-101 (720)
59 2db3_A ATP-dependent RNA helic 98.1 2E-05 6.8E-10 90.9 13.7 68 504-571 78-152 (434)
60 4a2w_A RIG-I, retinoic acid in 98.0 9.4E-06 3.2E-10 102.6 10.9 78 503-580 247-332 (936)
61 2p6r_A Afuhel308 helicase; pro 98.0 6.7E-06 2.3E-10 100.7 9.2 75 503-578 24-101 (702)
62 3llm_A ATP-dependent RNA helic 98.0 1.7E-05 5.7E-10 83.6 10.2 66 505-570 62-131 (235)
63 3fmp_B ATP-dependent RNA helic 98.0 1.8E-05 6.1E-10 92.2 10.8 68 503-570 113-184 (479)
64 3fho_A ATP-dependent RNA helic 98.0 4.2E-06 1.4E-10 98.6 5.4 70 502-571 139-212 (508)
65 3i5x_A ATP-dependent RNA helic 97.9 3.3E-05 1.1E-09 91.7 12.8 69 502-570 92-168 (563)
66 4ddu_A Reverse gyrase; topoiso 97.9 2.5E-05 8.7E-10 100.0 11.9 75 504-579 78-155 (1104)
67 4a4z_A Antiviral helicase SKI2 97.9 2.8E-05 9.6E-10 98.7 12.1 74 504-578 39-114 (997)
68 2xgj_A ATP-dependent RNA helic 97.9 2.3E-05 7.8E-10 99.5 11.1 67 504-571 86-152 (1010)
69 3sqw_A ATP-dependent RNA helic 97.9 4.1E-05 1.4E-09 91.6 12.7 68 503-570 42-117 (579)
70 3dmq_A RNA polymerase-associat 97.8 4.4E-05 1.5E-09 96.8 11.9 151 503-701 152-320 (968)
71 1z63_A Helicase of the SNF2/RA 97.8 7.1E-05 2.4E-09 87.5 11.5 141 503-699 36-189 (500)
72 2l8b_A Protein TRAI, DNA helic 97.7 0.00011 3.7E-09 74.0 10.2 63 506-568 36-100 (189)
73 2eyq_A TRCF, transcription-rep 97.7 0.00019 6.6E-09 92.3 15.3 66 504-570 603-674 (1151)
74 1oyw_A RECQ helicase, ATP-depe 97.7 0.00011 3.7E-09 86.9 11.1 72 504-579 25-96 (523)
75 2v1x_A ATP-dependent DNA helic 97.7 8.9E-05 3E-09 89.0 10.5 73 504-580 44-116 (591)
76 1gku_B Reverse gyrase, TOP-RG; 97.6 0.00014 4.8E-09 92.9 11.4 65 505-571 58-122 (1054)
77 4f92_B U5 small nuclear ribonu 97.5 0.0003 1E-08 93.6 13.5 78 501-578 923-1007(1724)
78 3crv_A XPD/RAD3 related DNA he 97.5 0.00022 7.5E-09 84.8 10.8 72 505-580 4-83 (551)
79 2vl7_A XPD; helicase, unknown 97.4 0.00014 4.6E-09 86.4 7.4 73 505-581 8-84 (540)
80 3rc3_A ATP-dependent RNA helic 97.4 0.00025 8.4E-09 86.2 9.2 60 515-579 151-210 (677)
81 1z3i_X Similar to RAD54-like; 97.4 0.0009 3.1E-08 81.1 13.5 154 504-699 55-232 (644)
82 2w00_A HSDR, R.ECOR124I; ATP-b 97.3 0.00035 1.2E-08 88.5 9.5 67 504-571 271-353 (1038)
83 3mwy_W Chromo domain-containin 97.2 0.00067 2.3E-08 84.3 10.2 159 503-699 235-407 (800)
84 4f92_B U5 small nuclear ribonu 97.2 0.0011 3.7E-08 88.4 11.9 79 500-578 75-168 (1724)
85 3ec2_A DNA replication protein 97.1 0.00089 3.1E-08 67.0 7.4 49 506-554 16-73 (180)
86 2j9r_A Thymidine kinase; TK1, 97.0 0.0015 5E-08 67.9 8.6 38 520-558 29-66 (214)
87 3kl4_A SRP54, signal recogniti 96.9 0.0057 1.9E-07 70.2 13.8 55 521-576 99-156 (433)
88 3dm5_A SRP54, signal recogniti 96.9 0.0057 2E-07 70.3 13.7 55 521-576 102-159 (443)
89 3o8b_A HCV NS3 protease/helica 96.9 0.00055 1.9E-08 82.6 5.2 49 518-570 231-279 (666)
90 2whx_A Serine protease/ntpase/ 96.9 0.00099 3.4E-08 80.3 6.7 58 512-570 179-237 (618)
91 1g5t_A COB(I)alamin adenosyltr 96.7 0.014 4.7E-07 59.8 12.8 59 518-580 27-89 (196)
92 1w4r_A Thymidine kinase; type 96.5 0.0046 1.6E-07 63.2 7.4 38 519-557 20-57 (195)
93 1tf5_A Preprotein translocase 96.3 0.023 7.7E-07 69.8 13.7 73 504-579 83-159 (844)
94 3bos_A Putative DNA replicatio 96.3 0.011 3.8E-07 61.0 9.3 49 505-554 35-86 (242)
95 2w58_A DNAI, primosome compone 96.2 0.0097 3.3E-07 60.4 8.2 34 520-554 55-88 (202)
96 3te6_A Regulatory protein SIR3 96.2 0.0035 1.2E-07 69.1 4.9 28 519-546 45-72 (318)
97 2fsf_A Preprotein translocase 96.0 0.02 7E-07 70.0 11.1 73 504-579 74-150 (853)
98 3e2i_A Thymidine kinase; Zn-bi 96.0 0.014 4.7E-07 60.6 8.2 39 519-558 28-66 (219)
99 2gno_A DNA polymerase III, gam 96.0 0.0083 2.9E-07 65.8 6.9 45 663-707 82-132 (305)
100 1nkt_A Preprotein translocase 95.9 0.015 5.2E-07 71.4 9.5 73 504-579 111-187 (922)
101 2dr3_A UPF0273 protein PH0284; 95.9 0.0092 3.1E-07 62.1 6.5 53 519-573 23-75 (247)
102 2zts_A Putative uncharacterize 95.9 0.0091 3.1E-07 62.2 6.4 54 519-573 30-83 (251)
103 2xau_A PRE-mRNA-splicing facto 95.8 0.01 3.5E-07 73.3 7.5 64 507-570 96-162 (773)
104 2ipc_A Preprotein translocase 95.8 0.019 6.6E-07 70.5 9.7 72 504-578 79-154 (997)
105 1jbk_A CLPB protein; beta barr 95.8 0.0083 2.8E-07 59.2 5.6 39 507-545 28-69 (195)
106 1l8q_A Chromosomal replication 95.8 0.019 6.5E-07 62.9 8.7 36 520-556 38-73 (324)
107 2orv_A Thymidine kinase; TP4A 95.7 0.0088 3E-07 62.7 5.4 38 519-557 19-56 (234)
108 2wv9_A Flavivirin protease NS2 95.6 0.0053 1.8E-07 74.6 3.9 62 511-573 227-295 (673)
109 2orw_A Thymidine kinase; TMTK, 95.6 0.0093 3.2E-07 60.4 5.0 38 519-557 3-40 (184)
110 2chg_A Replication factor C sm 95.5 0.012 4.1E-07 59.5 5.6 40 506-545 22-64 (226)
111 2z83_A Helicase/nucleoside tri 95.5 0.0069 2.3E-07 70.2 4.1 51 518-569 20-71 (459)
112 1yks_A Genome polyprotein [con 95.5 0.009 3.1E-07 68.9 5.1 55 517-572 6-61 (440)
113 2p65_A Hypothetical protein PF 95.5 0.01 3.4E-07 58.5 4.7 39 507-545 28-69 (187)
114 2v6i_A RNA helicase; membrane, 95.5 0.011 3.9E-07 67.8 5.8 50 519-569 2-52 (431)
115 4b4t_K 26S protease regulatory 95.5 0.007 2.4E-07 69.4 3.9 22 522-543 209-230 (428)
116 2kjq_A DNAA-related protein; s 95.4 0.015 5E-07 56.8 5.6 41 504-545 22-62 (149)
117 4a15_A XPD helicase, ATP-depen 95.4 0.025 8.6E-07 68.1 8.7 76 506-581 5-88 (620)
118 1tue_A Replication protein E1; 95.4 0.0066 2.3E-07 62.6 3.0 23 521-543 60-82 (212)
119 3h4m_A Proteasome-activating n 95.3 0.013 4.3E-07 62.8 5.2 23 520-542 52-74 (285)
120 3b9p_A CG5977-PA, isoform A; A 95.2 0.014 4.9E-07 62.9 5.2 23 520-542 55-77 (297)
121 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.025 8.7E-07 58.0 6.8 52 519-572 23-74 (235)
122 2qgz_A Helicase loader, putati 95.2 0.023 7.8E-07 62.3 6.7 36 519-555 152-188 (308)
123 2b8t_A Thymidine kinase; deoxy 95.2 0.017 5.7E-07 60.5 5.3 38 519-557 12-49 (223)
124 1vma_A Cell division protein F 95.2 0.038 1.3E-06 60.5 8.4 55 521-576 106-163 (306)
125 3syl_A Protein CBBX; photosynt 95.0 0.021 7.1E-07 61.8 5.7 26 521-546 69-94 (309)
126 1ofh_A ATP-dependent HSL prote 95.0 0.017 5.7E-07 62.4 4.9 25 519-543 50-74 (310)
127 3hws_A ATP-dependent CLP prote 95.0 0.017 5.9E-07 64.5 5.1 25 519-543 51-75 (363)
128 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.022 7.4E-07 60.0 5.7 24 520-543 40-63 (262)
129 3n70_A Transport activator; si 95.0 0.019 6.4E-07 55.4 4.7 24 518-541 23-46 (145)
130 1njg_A DNA polymerase III subu 95.0 0.019 6.3E-07 58.7 4.9 39 506-544 28-70 (250)
131 3eie_A Vacuolar protein sortin 95.0 0.022 7.4E-07 62.6 5.7 22 521-542 53-74 (322)
132 3t15_A Ribulose bisphosphate c 94.9 0.012 4.1E-07 63.9 3.3 23 521-543 38-60 (293)
133 2v1u_A Cell division control p 94.9 0.022 7.6E-07 63.2 5.6 40 506-545 24-70 (387)
134 2r2a_A Uncharacterized protein 94.8 0.013 4.5E-07 60.1 3.3 23 521-543 7-29 (199)
135 2jlq_A Serine protease subunit 94.8 0.018 6.2E-07 66.4 4.8 57 512-569 11-69 (451)
136 4b4t_M 26S protease regulatory 94.7 0.014 4.9E-07 66.9 3.6 32 521-556 217-248 (434)
137 2r62_A Cell division protease 94.7 0.01 3.6E-07 62.9 2.2 23 521-543 46-68 (268)
138 2r8r_A Sensor protein; KDPD, P 94.6 0.03 1E-06 58.6 5.3 32 522-554 9-40 (228)
139 4b4t_J 26S protease regulatory 94.6 0.017 5.7E-07 65.6 3.5 23 521-543 184-206 (405)
140 2qby_B CDC6 homolog 3, cell di 94.5 0.058 2E-06 60.0 7.9 27 520-546 46-72 (384)
141 4b4t_L 26S protease subunit RP 94.5 0.017 5.9E-07 66.3 3.6 23 521-543 217-239 (437)
142 2z4s_A Chromosomal replication 94.5 0.067 2.3E-06 61.6 8.4 37 520-556 131-168 (440)
143 1xx6_A Thymidine kinase; NESG, 94.5 0.034 1.2E-06 56.7 5.3 37 520-557 9-45 (191)
144 1iqp_A RFCS; clamp loader, ext 94.4 0.029 9.8E-07 60.9 4.9 39 506-544 30-71 (327)
145 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.03 1E-06 61.7 5.0 24 520-543 46-69 (322)
146 4fcw_A Chaperone protein CLPB; 94.4 0.026 8.8E-07 61.1 4.3 24 521-544 49-72 (311)
147 3co5_A Putative two-component 94.3 0.018 6.1E-07 55.4 2.7 22 519-540 27-48 (143)
148 1fnn_A CDC6P, cell division co 94.3 0.03 1E-06 62.3 5.0 38 507-544 23-69 (389)
149 1lv7_A FTSH; alpha/beta domain 94.3 0.034 1.2E-06 58.6 5.1 23 521-543 47-69 (257)
150 2qby_A CDC6 homolog 1, cell di 94.3 0.037 1.3E-06 61.3 5.6 40 507-546 26-72 (386)
151 3bh0_A DNAB-like replicative h 94.2 0.037 1.3E-06 60.7 5.4 50 519-570 68-117 (315)
152 1d2n_A N-ethylmaleimide-sensit 94.2 0.043 1.5E-06 58.4 5.7 23 520-542 65-87 (272)
153 1sxj_A Activator 1 95 kDa subu 94.2 0.031 1.1E-06 65.6 5.1 24 520-543 78-101 (516)
154 3uk6_A RUVB-like 2; hexameric 94.2 0.039 1.3E-06 61.3 5.5 24 521-544 72-95 (368)
155 1w36_C RECC, exodeoxyribonucle 94.2 0.031 1.1E-06 71.8 5.4 77 852-928 656-757 (1122)
156 4b4t_I 26S protease regulatory 94.2 0.023 8E-07 64.7 3.6 23 521-543 218-240 (437)
157 2px0_A Flagellar biosynthesis 94.1 0.043 1.5E-06 59.8 5.4 36 520-555 106-141 (296)
158 1cr0_A DNA primase/helicase; R 94.1 0.054 1.8E-06 58.5 6.2 50 519-569 35-84 (296)
159 1j8m_F SRP54, signal recogniti 94.1 0.075 2.6E-06 57.9 7.3 55 521-576 100-157 (297)
160 3u61_B DNA polymerase accessor 94.0 0.038 1.3E-06 60.4 4.9 39 505-543 30-72 (324)
161 1c4o_A DNA nucleotide excision 94.0 0.11 3.8E-06 62.9 9.4 64 504-571 8-76 (664)
162 1in4_A RUVB, holliday junction 94.0 0.038 1.3E-06 61.0 5.0 24 520-543 52-75 (334)
163 3pfi_A Holliday junction ATP-d 94.0 0.033 1.1E-06 61.2 4.4 23 520-542 56-78 (338)
164 2bjv_A PSP operon transcriptio 94.0 0.037 1.3E-06 58.7 4.6 24 519-542 29-52 (265)
165 3io5_A Recombination and repai 94.0 0.024 8.3E-07 62.2 3.1 42 519-560 28-70 (333)
166 2r6a_A DNAB helicase, replicat 94.0 0.053 1.8E-06 62.6 6.2 50 519-569 203-252 (454)
167 2r44_A Uncharacterized protein 94.0 0.037 1.3E-06 60.7 4.7 34 509-542 35-69 (331)
168 3hr8_A Protein RECA; alpha and 93.9 0.034 1.2E-06 62.2 4.3 49 519-568 61-109 (356)
169 1sxj_C Activator 1 40 kDa subu 93.9 0.049 1.7E-06 60.1 5.6 39 506-544 30-71 (340)
170 2j37_W Signal recognition part 93.9 0.08 2.8E-06 61.9 7.6 56 521-577 103-161 (504)
171 1um8_A ATP-dependent CLP prote 93.9 0.044 1.5E-06 61.4 5.1 25 519-543 72-96 (376)
172 2qp9_X Vacuolar protein sortin 93.8 0.045 1.6E-06 61.1 5.1 23 521-543 86-108 (355)
173 4b4t_H 26S protease regulatory 93.8 0.025 8.5E-07 65.1 3.0 23 521-543 245-267 (467)
174 2xxa_A Signal recognition part 93.8 0.08 2.7E-06 60.8 7.2 57 521-577 102-161 (433)
175 2chq_A Replication factor C sm 93.8 0.047 1.6E-06 59.0 5.0 39 506-544 22-63 (319)
176 1sxj_D Activator 1 41 kDa subu 93.8 0.037 1.2E-06 60.9 4.2 37 508-544 44-83 (353)
177 3kb2_A SPBC2 prophage-derived 93.8 0.036 1.2E-06 54.1 3.7 23 521-543 3-25 (173)
178 3d8b_A Fidgetin-like protein 1 93.8 0.047 1.6E-06 60.9 5.1 23 520-542 118-140 (357)
179 3cf0_A Transitional endoplasmi 93.7 0.03 1E-06 60.9 3.3 23 520-542 50-72 (301)
180 3vfd_A Spastin; ATPase, microt 93.7 0.05 1.7E-06 61.4 5.2 37 506-542 120-171 (389)
181 1hqc_A RUVB; extended AAA-ATPa 93.6 0.039 1.3E-06 60.1 4.0 24 520-543 39-62 (324)
182 1sxj_E Activator 1 40 kDa subu 93.6 0.038 1.3E-06 61.0 4.0 47 506-552 19-69 (354)
183 2q6t_A DNAB replication FORK h 93.5 0.066 2.3E-06 61.6 5.9 50 519-569 200-249 (444)
184 1nlf_A Regulatory protein REPA 93.3 0.089 3.1E-06 56.3 6.2 49 519-569 30-88 (279)
185 2zan_A Vacuolar protein sortin 93.3 0.057 2E-06 62.2 5.0 24 520-543 168-191 (444)
186 1qhx_A CPT, protein (chloramph 93.3 0.04 1.4E-06 54.4 3.2 24 520-543 4-27 (178)
187 2zr9_A Protein RECA, recombina 93.3 0.047 1.6E-06 60.9 4.1 39 519-558 61-99 (349)
188 1q57_A DNA primase/helicase; d 93.3 0.056 1.9E-06 63.2 4.8 50 519-569 242-291 (503)
189 3pvs_A Replication-associated 93.3 0.071 2.4E-06 61.5 5.6 24 520-543 51-74 (447)
190 1n0w_A DNA repair protein RAD5 93.2 0.052 1.8E-06 56.2 4.0 39 519-557 24-67 (243)
191 1g8p_A Magnesium-chelatase 38 93.2 0.043 1.5E-06 60.3 3.4 25 519-543 45-69 (350)
192 1u94_A RECA protein, recombina 93.1 0.08 2.7E-06 59.2 5.5 38 519-557 63-100 (356)
193 4a1f_A DNAB helicase, replicat 93.1 0.077 2.6E-06 58.9 5.3 49 519-569 46-94 (338)
194 1jr3_A DNA polymerase III subu 93.1 0.064 2.2E-06 59.4 4.8 39 506-544 21-63 (373)
195 2x8a_A Nuclear valosin-contain 93.1 0.041 1.4E-06 59.1 3.0 20 522-541 47-66 (274)
196 2vhj_A Ntpase P4, P4; non- hyd 93.1 0.065 2.2E-06 59.0 4.6 24 519-542 123-146 (331)
197 1kht_A Adenylate kinase; phosp 93.1 0.057 1.9E-06 53.7 3.8 25 520-544 4-28 (192)
198 2z43_A DNA repair and recombin 93.0 0.053 1.8E-06 59.7 3.9 54 519-572 107-166 (324)
199 1xjc_A MOBB protein homolog; s 93.0 0.098 3.4E-06 52.2 5.4 38 520-558 5-42 (169)
200 1gvn_B Zeta; postsegregational 93.0 0.082 2.8E-06 57.2 5.2 22 521-542 35-56 (287)
201 3trf_A Shikimate kinase, SK; a 93.0 0.061 2.1E-06 53.5 3.9 25 519-543 5-29 (185)
202 1sxj_B Activator 1 37 kDa subu 92.9 0.079 2.7E-06 57.2 5.1 38 507-544 27-67 (323)
203 1nks_A Adenylate kinase; therm 92.9 0.051 1.8E-06 54.0 3.3 33 521-554 3-35 (194)
204 1u0j_A DNA replication protein 92.9 0.1 3.5E-06 55.8 5.7 39 504-542 83-127 (267)
205 2ehv_A Hypothetical protein PH 92.9 0.13 4.4E-06 53.4 6.4 37 519-556 30-67 (251)
206 2v3c_C SRP54, signal recogniti 92.9 0.061 2.1E-06 61.8 4.2 34 521-555 101-134 (432)
207 3lw7_A Adenylate kinase relate 92.8 0.05 1.7E-06 52.9 3.0 20 520-539 2-21 (179)
208 1ly1_A Polynucleotide kinase; 92.8 0.051 1.7E-06 53.5 3.1 21 521-541 4-24 (181)
209 1ixz_A ATP-dependent metallopr 92.8 0.048 1.6E-06 57.4 3.0 21 522-542 52-72 (254)
210 1zu4_A FTSY; GTPase, signal re 92.8 0.09 3.1E-06 57.9 5.3 35 520-555 106-140 (320)
211 2cvh_A DNA repair and recombin 92.7 0.07 2.4E-06 54.3 4.1 34 519-556 20-53 (220)
212 1p9r_A General secretion pathw 92.7 0.12 4E-06 59.1 6.3 49 505-554 151-201 (418)
213 2c9o_A RUVB-like 1; hexameric 92.7 0.055 1.9E-06 62.5 3.6 24 520-543 64-87 (456)
214 2z0h_A DTMP kinase, thymidylat 92.6 0.13 4.4E-06 51.4 5.8 32 521-553 2-33 (197)
215 3b9q_A Chloroplast SRP recepto 92.6 0.24 8.3E-06 54.0 8.4 56 520-576 101-159 (302)
216 2iyv_A Shikimate kinase, SK; t 92.6 0.073 2.5E-06 52.9 3.9 24 520-543 3-26 (184)
217 3iij_A Coilin-interacting nucl 92.6 0.073 2.5E-06 52.7 3.9 25 519-543 11-35 (180)
218 2rhm_A Putative kinase; P-loop 92.5 0.063 2.2E-06 53.5 3.4 24 520-543 6-29 (193)
219 1xp8_A RECA protein, recombina 92.5 0.1 3.5E-06 58.6 5.3 39 519-558 74-112 (366)
220 3e70_C DPA, signal recognition 92.4 0.18 6.3E-06 55.6 7.2 56 520-576 130-188 (328)
221 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.062 2.1E-06 62.8 3.5 28 516-543 38-65 (500)
222 1kag_A SKI, shikimate kinase I 92.4 0.069 2.3E-06 52.4 3.4 23 520-542 5-27 (173)
223 2plr_A DTMP kinase, probable t 92.4 0.072 2.4E-06 53.9 3.6 24 520-543 5-28 (213)
224 2fna_A Conserved hypothetical 92.4 0.11 3.6E-06 56.9 5.2 36 507-543 19-54 (357)
225 3cpe_A Terminase, DNA packagin 92.3 0.3 1E-05 58.3 9.3 67 504-570 163-230 (592)
226 2d7d_A Uvrabc system protein B 92.2 0.32 1.1E-05 58.9 9.7 64 504-571 12-80 (661)
227 3bgw_A DNAB-like replicative h 92.2 0.1 3.5E-06 60.1 5.0 49 519-569 197-245 (444)
228 3pxg_A Negative regulator of g 92.2 0.11 3.9E-06 60.1 5.4 39 507-545 186-227 (468)
229 1v5w_A DMC1, meiotic recombina 92.2 0.082 2.8E-06 58.7 4.0 54 519-572 122-181 (343)
230 1w5s_A Origin recognition comp 92.2 0.095 3.2E-06 58.8 4.6 26 520-545 51-78 (412)
231 1tev_A UMP-CMP kinase; ploop, 92.1 0.081 2.8E-06 52.6 3.6 24 520-543 4-27 (196)
232 1via_A Shikimate kinase; struc 92.1 0.086 2.9E-06 52.0 3.7 23 521-543 6-28 (175)
233 3cm0_A Adenylate kinase; ATP-b 92.1 0.083 2.9E-06 52.4 3.5 23 521-543 6-28 (186)
234 2yvu_A Probable adenylyl-sulfa 92.0 0.14 4.9E-06 50.9 5.3 34 520-554 14-47 (186)
235 3hu3_A Transitional endoplasmi 92.0 0.072 2.4E-06 62.2 3.4 22 521-542 240-261 (489)
236 1iy2_A ATP-dependent metallopr 92.0 0.069 2.4E-06 57.1 3.0 21 522-542 76-96 (278)
237 2o0j_A Terminase, DNA packagin 92.0 0.39 1.3E-05 54.1 9.3 67 504-570 163-230 (385)
238 3vaa_A Shikimate kinase, SK; s 92.0 0.089 3E-06 53.3 3.7 25 519-543 25-49 (199)
239 3fb4_A Adenylate kinase; psych 91.9 0.087 3E-06 53.8 3.6 22 522-543 3-24 (216)
240 3jvv_A Twitching mobility prot 91.9 0.16 5.4E-06 56.8 5.9 36 518-553 122-157 (356)
241 2og2_A Putative signal recogni 91.9 0.32 1.1E-05 54.3 8.4 55 521-576 159-216 (359)
242 2c95_A Adenylate kinase 1; tra 91.9 0.088 3E-06 52.6 3.5 25 519-543 9-33 (196)
243 1e6c_A Shikimate kinase; phosp 91.9 0.098 3.4E-06 51.2 3.8 24 520-543 3-26 (173)
244 2cdn_A Adenylate kinase; phosp 91.8 0.091 3.1E-06 53.1 3.6 23 521-543 22-44 (201)
245 2ze6_A Isopentenyl transferase 91.8 0.089 3E-06 55.8 3.6 23 521-543 3-25 (253)
246 2bwj_A Adenylate kinase 5; pho 91.8 0.098 3.4E-06 52.4 3.8 25 519-543 12-36 (199)
247 3t61_A Gluconokinase; PSI-biol 91.8 0.094 3.2E-06 53.0 3.6 24 520-543 19-42 (202)
248 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.15 5.1E-06 54.1 5.3 35 520-555 5-39 (260)
249 1qf9_A UMP/CMP kinase, protein 91.6 0.093 3.2E-06 52.1 3.4 23 521-543 8-30 (194)
250 3dl0_A Adenylate kinase; phosp 91.5 0.082 2.8E-06 54.1 2.9 21 522-542 3-23 (216)
251 1a5t_A Delta prime, HOLB; zinc 91.5 0.11 3.9E-06 57.2 4.2 26 520-545 25-50 (334)
252 2pbr_A DTMP kinase, thymidylat 91.5 0.11 3.6E-06 51.8 3.6 31 521-552 2-32 (195)
253 1zuh_A Shikimate kinase; alpha 91.5 0.11 3.9E-06 50.7 3.7 24 520-543 8-31 (168)
254 1zp6_A Hypothetical protein AT 91.4 0.084 2.9E-06 52.6 2.8 23 519-541 9-31 (191)
255 2jaq_A Deoxyguanosine kinase; 91.4 0.11 3.7E-06 52.2 3.5 23 521-543 2-24 (205)
256 1yrb_A ATP(GTP)binding protein 91.4 0.14 4.8E-06 53.8 4.6 35 519-555 14-48 (262)
257 4eun_A Thermoresistant glucoki 91.3 0.12 4.1E-06 52.3 3.8 25 519-543 29-53 (200)
258 2wwf_A Thymidilate kinase, put 91.3 0.11 3.6E-06 52.8 3.4 25 520-544 11-35 (212)
259 2ffh_A Protein (FFH); SRP54, s 91.3 0.33 1.1E-05 55.5 7.7 57 521-578 100-159 (425)
260 2yhs_A FTSY, cell division pro 91.2 0.38 1.3E-05 55.9 8.3 55 521-576 295-352 (503)
261 3b85_A Phosphate starvation-in 91.2 0.19 6.5E-06 51.7 5.2 38 505-542 8-45 (208)
262 1nn5_A Similar to deoxythymidy 91.2 0.12 4.1E-06 52.4 3.7 32 519-551 9-40 (215)
263 1g41_A Heat shock protein HSLU 91.2 0.16 5.6E-06 58.3 5.1 24 520-543 51-74 (444)
264 1aky_A Adenylate kinase; ATP:A 91.2 0.12 4E-06 53.2 3.6 24 520-543 5-28 (220)
265 1knq_A Gluconate kinase; ALFA/ 91.1 0.12 4.2E-06 50.8 3.6 23 520-542 9-31 (175)
266 3sr0_A Adenylate kinase; phosp 91.1 0.12 4.1E-06 53.2 3.6 21 522-542 3-23 (206)
267 3umf_A Adenylate kinase; rossm 91.1 0.12 4.1E-06 53.7 3.5 25 519-543 29-53 (217)
268 1zak_A Adenylate kinase; ATP:A 91.0 0.12 4E-06 53.2 3.4 24 520-543 6-29 (222)
269 1ls1_A Signal recognition part 90.9 0.47 1.6E-05 51.5 8.3 57 520-577 99-158 (295)
270 2vli_A Antibiotic resistance p 90.9 0.079 2.7E-06 52.4 2.0 23 520-542 6-28 (183)
271 1y63_A LMAJ004144AAA protein; 90.9 0.13 4.4E-06 51.4 3.6 23 520-542 11-33 (184)
272 3u4q_B ATP-dependent helicase/ 90.9 0.23 7.9E-06 64.1 6.8 76 851-926 584-692 (1166)
273 1ojl_A Transcriptional regulat 90.9 0.15 5.3E-06 55.5 4.4 23 519-541 25-47 (304)
274 1np6_A Molybdopterin-guanine d 90.9 0.24 8.1E-06 49.6 5.4 36 519-555 6-41 (174)
275 2i1q_A DNA repair and recombin 90.8 0.11 3.6E-06 57.0 3.0 54 519-572 98-167 (322)
276 3p32_A Probable GTPase RV1496/ 90.7 0.18 6E-06 56.3 4.8 36 520-556 80-115 (355)
277 2xb4_A Adenylate kinase; ATP-b 90.7 0.14 4.6E-06 53.0 3.5 23 521-543 2-24 (223)
278 2pt5_A Shikimate kinase, SK; a 90.6 0.14 4.9E-06 49.7 3.6 23 521-543 2-24 (168)
279 3tlx_A Adenylate kinase 2; str 90.6 0.14 4.7E-06 53.9 3.6 23 521-543 31-53 (243)
280 2qor_A Guanylate kinase; phosp 90.6 0.13 4.3E-06 52.3 3.1 26 518-543 11-36 (204)
281 2bdt_A BH3686; alpha-beta prot 90.4 0.13 4.4E-06 51.3 3.1 21 521-541 4-24 (189)
282 2ce7_A Cell division protein F 90.4 0.13 4.6E-06 59.6 3.6 23 521-543 51-73 (476)
283 1ak2_A Adenylate kinase isoenz 90.4 0.15 5E-06 53.1 3.6 24 520-543 17-40 (233)
284 1ukz_A Uridylate kinase; trans 90.4 0.12 4.2E-06 52.1 2.9 22 521-542 17-38 (203)
285 1c9k_A COBU, adenosylcobinamid 90.3 0.1 3.5E-06 52.6 2.2 45 521-570 1-45 (180)
286 2gk6_A Regulator of nonsense t 90.3 0.11 3.7E-06 62.5 2.7 53 328-380 4-56 (624)
287 1zd8_A GTP:AMP phosphotransfer 90.3 0.12 4E-06 53.5 2.6 23 520-542 8-30 (227)
288 3ug7_A Arsenical pump-driving 90.2 0.23 8E-06 55.2 5.2 38 519-557 26-63 (349)
289 2qen_A Walker-type ATPase; unk 90.2 0.2 6.8E-06 54.6 4.5 36 507-542 18-54 (350)
290 1ye8_A Protein THEP1, hypothet 90.2 0.17 5.6E-06 50.8 3.6 23 521-543 2-24 (178)
291 2ewv_A Twitching motility prot 90.2 0.2 6.9E-06 56.3 4.6 37 519-555 136-172 (372)
292 3pxi_A Negative regulator of g 90.1 0.22 7.7E-06 61.2 5.4 38 507-544 186-226 (758)
293 3be4_A Adenylate kinase; malar 90.1 0.15 5.3E-06 52.3 3.3 23 521-543 7-29 (217)
294 1e4v_A Adenylate kinase; trans 90.1 0.16 5.3E-06 52.0 3.3 22 522-543 3-24 (214)
295 3uie_A Adenylyl-sulfate kinase 90.0 0.17 6E-06 51.1 3.6 39 505-544 12-50 (200)
296 3tau_A Guanylate kinase, GMP k 89.9 0.16 5.5E-06 51.9 3.3 23 519-541 8-30 (208)
297 1rz3_A Hypothetical protein rb 89.9 0.42 1.4E-05 48.4 6.4 33 521-554 24-56 (201)
298 1m7g_A Adenylylsulfate kinase; 89.8 0.23 7.7E-06 50.7 4.3 49 505-554 12-60 (211)
299 2v54_A DTMP kinase, thymidylat 89.8 0.14 4.7E-06 51.5 2.7 24 520-543 5-28 (204)
300 3zq6_A Putative arsenical pump 89.7 0.27 9.1E-06 54.0 5.1 37 520-557 15-51 (324)
301 3m6a_A ATP-dependent protease 89.7 0.17 5.9E-06 59.7 3.8 25 519-543 108-132 (543)
302 1rj9_A FTSY, signal recognitio 89.7 0.27 9.2E-06 53.7 5.0 37 519-556 102-138 (304)
303 2bbw_A Adenylate kinase 4, AK4 89.7 0.19 6.5E-06 52.6 3.7 25 519-543 27-51 (246)
304 2p5t_B PEZT; postsegregational 89.6 0.12 4E-06 54.7 2.1 22 521-542 34-55 (253)
305 1kgd_A CASK, peripheral plasma 89.6 0.2 6.9E-06 49.8 3.7 25 518-542 4-28 (180)
306 3bs4_A Uncharacterized protein 89.6 0.26 9E-06 52.5 4.8 54 519-574 21-74 (260)
307 1cke_A CK, MSSA, protein (cyti 89.4 0.21 7.3E-06 51.1 3.8 24 520-543 6-29 (227)
308 3tr0_A Guanylate kinase, GMP k 89.4 0.19 6.6E-06 50.5 3.4 24 519-542 7-30 (205)
309 2j41_A Guanylate kinase; GMP, 89.4 0.2 6.7E-06 50.5 3.4 24 519-542 6-29 (207)
310 4gp7_A Metallophosphoesterase; 89.3 0.22 7.4E-06 49.2 3.6 20 519-538 9-28 (171)
311 4ag6_A VIRB4 ATPase, type IV s 89.1 0.3 1E-05 55.0 5.0 58 518-580 34-91 (392)
312 3bfv_A CAPA1, CAPB2, membrane 89.0 0.62 2.1E-05 49.8 7.2 34 520-554 83-117 (271)
313 2eyu_A Twitching motility prot 89.0 0.3 1E-05 52.0 4.7 38 518-555 24-61 (261)
314 2dhr_A FTSH; AAA+ protein, hex 89.0 0.17 6E-06 59.0 3.0 21 522-542 67-87 (499)
315 1jjv_A Dephospho-COA kinase; P 88.9 0.2 6.7E-06 50.7 3.1 21 521-541 4-24 (206)
316 3cf2_A TER ATPase, transitiona 88.9 0.13 4.5E-06 63.3 2.0 21 522-542 241-261 (806)
317 3cmu_A Protein RECA, recombina 88.8 0.59 2E-05 62.7 8.1 40 519-559 1427-1466(2050)
318 2oap_1 GSPE-2, type II secreti 88.8 0.31 1E-05 57.2 5.0 39 505-543 245-284 (511)
319 4edh_A DTMP kinase, thymidylat 88.7 0.47 1.6E-05 48.9 5.8 39 519-558 6-45 (213)
320 1gtv_A TMK, thymidylate kinase 88.6 0.14 4.6E-06 52.0 1.6 24 521-544 2-25 (214)
321 3ake_A Cytidylate kinase; CMP 88.5 0.28 9.5E-06 49.4 3.8 24 520-543 3-26 (208)
322 1ex7_A Guanylate kinase; subst 88.4 0.28 9.5E-06 49.6 3.7 21 520-540 2-22 (186)
323 1r6b_X CLPA protein; AAA+, N-t 88.4 0.38 1.3E-05 59.0 5.7 39 507-545 192-233 (758)
324 2pez_A Bifunctional 3'-phospho 88.4 0.27 9.2E-06 48.6 3.6 26 520-545 6-31 (179)
325 3pxi_A Negative regulator of g 88.2 0.34 1.2E-05 59.5 5.1 24 521-544 523-546 (758)
326 3c8u_A Fructokinase; YP_612366 88.2 0.26 8.8E-06 50.2 3.3 25 520-544 23-47 (208)
327 1ihu_A Arsenical pump-driving 88.0 0.42 1.4E-05 56.9 5.5 38 519-557 8-45 (589)
328 3a00_A Guanylate kinase, GMP k 88.0 0.25 8.7E-06 49.3 3.1 24 520-543 2-25 (186)
329 3v9p_A DTMP kinase, thymidylat 87.8 0.57 1.9E-05 48.9 5.7 36 519-554 25-63 (227)
330 4eaq_A DTMP kinase, thymidylat 87.7 0.3 1E-05 50.9 3.5 33 520-554 27-59 (229)
331 3nwj_A ATSK2; P loop, shikimat 87.6 0.36 1.2E-05 51.2 4.1 25 519-543 48-72 (250)
332 4a74_A DNA repair and recombin 87.6 0.25 8.6E-06 50.5 2.8 26 519-544 25-50 (231)
333 1uj2_A Uridine-cytidine kinase 87.5 0.27 9.1E-06 51.8 3.1 22 521-542 24-45 (252)
334 1e9r_A Conjugal transfer prote 87.5 0.45 1.5E-05 54.2 5.2 43 519-562 53-95 (437)
335 2wsm_A Hydrogenase expression/ 87.3 0.46 1.6E-05 48.3 4.6 34 519-554 30-63 (221)
336 2www_A Methylmalonic aciduria 87.3 0.47 1.6E-05 52.7 5.0 36 520-556 75-110 (349)
337 3cf2_A TER ATPase, transitiona 87.3 0.2 6.8E-06 61.8 2.1 21 522-542 514-534 (806)
338 1qvr_A CLPB protein; coiled co 87.3 0.58 2E-05 58.3 6.4 38 508-545 177-217 (854)
339 1tf7_A KAIC; homohexamer, hexa 87.3 0.57 1.9E-05 55.0 6.0 49 519-569 281-329 (525)
340 2qm8_A GTPase/ATPase; G protei 87.2 0.51 1.7E-05 52.2 5.3 37 519-556 55-91 (337)
341 3lv8_A DTMP kinase, thymidylat 87.1 0.76 2.6E-05 48.2 6.3 40 518-558 26-67 (236)
342 1f2t_A RAD50 ABC-ATPase; DNA d 87.1 0.33 1.1E-05 47.0 3.3 26 519-544 23-48 (149)
343 3iqw_A Tail-anchored protein t 87.1 0.42 1.4E-05 52.8 4.5 37 519-556 16-52 (334)
344 3io3_A DEHA2D07832P; chaperone 87.0 0.58 2E-05 52.1 5.6 38 519-556 18-56 (348)
345 2woo_A ATPase GET3; tail-ancho 87.0 0.48 1.7E-05 52.1 4.9 36 519-555 19-54 (329)
346 3f9v_A Minichromosome maintena 87.0 0.22 7.6E-06 59.5 2.3 20 521-540 329-348 (595)
347 1svm_A Large T antigen; AAA+ f 86.9 0.36 1.2E-05 54.3 3.9 24 519-542 169-192 (377)
348 2if2_A Dephospho-COA kinase; a 86.9 0.29 9.9E-06 49.3 2.8 21 521-541 3-23 (204)
349 1byi_A Dethiobiotin synthase; 86.8 0.62 2.1E-05 47.5 5.3 34 521-555 4-37 (224)
350 3k1j_A LON protease, ATP-depen 86.6 0.36 1.2E-05 57.7 3.9 34 510-543 50-84 (604)
351 2ph1_A Nucleotide-binding prot 86.6 0.74 2.5E-05 48.6 5.9 34 520-554 20-53 (262)
352 2qt1_A Nicotinamide riboside k 86.5 0.31 1.1E-05 49.3 2.8 21 520-540 22-42 (207)
353 1ltq_A Polynucleotide kinase; 86.5 0.32 1.1E-05 52.3 3.1 21 521-541 4-24 (301)
354 3cio_A ETK, tyrosine-protein k 86.5 0.61 2.1E-05 50.6 5.3 34 520-554 105-139 (299)
355 1r6b_X CLPA protein; AAA+, N-t 86.5 0.37 1.3E-05 59.2 3.9 23 521-543 490-512 (758)
356 4tmk_A Protein (thymidylate ki 86.5 0.92 3.1E-05 46.8 6.4 43 519-561 3-46 (213)
357 3r20_A Cytidylate kinase; stru 86.4 0.39 1.3E-05 50.3 3.6 24 520-543 10-33 (233)
358 3kjh_A CO dehydrogenase/acetyl 86.4 0.37 1.3E-05 49.8 3.4 30 524-554 5-34 (254)
359 2oze_A ORF delta'; para, walke 86.3 1 3.5E-05 48.2 6.9 34 520-554 36-71 (298)
360 2woj_A ATPase GET3; tail-ancho 86.2 0.64 2.2E-05 51.8 5.4 39 519-557 18-57 (354)
361 3lda_A DNA repair protein RAD5 86.2 0.37 1.3E-05 54.7 3.4 38 519-556 178-220 (400)
362 1lvg_A Guanylate kinase, GMP k 86.1 0.45 1.5E-05 48.2 3.7 24 519-542 4-27 (198)
363 1hyq_A MIND, cell division inh 86.1 0.67 2.3E-05 48.6 5.3 34 521-555 5-38 (263)
364 2i3b_A HCR-ntpase, human cance 85.9 0.49 1.7E-05 47.8 3.9 25 520-544 2-26 (189)
365 3ea0_A ATPase, para family; al 85.9 0.54 1.9E-05 48.6 4.3 35 521-555 7-41 (245)
366 2grj_A Dephospho-COA kinase; T 85.8 0.46 1.6E-05 48.2 3.6 23 520-542 13-35 (192)
367 1qvr_A CLPB protein; coiled co 85.8 0.4 1.4E-05 59.8 3.8 24 521-544 590-613 (854)
368 2p67_A LAO/AO transport system 85.7 0.64 2.2E-05 51.4 5.0 35 520-555 57-91 (341)
369 3kta_A Chromosome segregation 85.5 0.4 1.4E-05 47.3 3.0 25 519-543 26-50 (182)
370 4dzz_A Plasmid partitioning pr 85.4 0.58 2E-05 46.9 4.1 33 522-555 5-37 (206)
371 3asz_A Uridine kinase; cytidin 85.3 0.46 1.6E-05 48.1 3.4 23 520-542 7-29 (211)
372 2wjy_A Regulator of nonsense t 85.3 0.31 1.1E-05 60.2 2.5 108 265-380 121-232 (800)
373 3crm_A TRNA delta(2)-isopenten 85.3 0.38 1.3E-05 53.0 2.8 23 520-542 6-28 (323)
374 3q9l_A Septum site-determining 85.3 0.67 2.3E-05 48.3 4.7 33 521-554 5-37 (260)
375 1g3q_A MIND ATPase, cell divis 85.2 0.69 2.3E-05 47.6 4.7 34 521-555 5-38 (237)
376 3tqc_A Pantothenate kinase; bi 85.0 0.76 2.6E-05 50.5 5.1 35 521-556 94-130 (321)
377 3end_A Light-independent proto 84.9 0.76 2.6E-05 49.6 5.1 33 521-554 43-75 (307)
378 3ney_A 55 kDa erythrocyte memb 84.8 0.55 1.9E-05 47.9 3.7 24 518-541 18-41 (197)
379 1uf9_A TT1252 protein; P-loop, 84.8 0.43 1.5E-05 47.7 2.8 21 521-541 10-30 (203)
380 3qks_A DNA double-strand break 84.7 0.49 1.7E-05 48.2 3.3 26 519-544 23-48 (203)
381 2afh_E Nitrogenase iron protei 84.6 0.8 2.7E-05 49.0 5.0 31 523-554 6-36 (289)
382 1cp2_A CP2, nitrogenase iron p 84.5 0.72 2.4E-05 48.6 4.5 31 523-554 5-35 (269)
383 2qmh_A HPR kinase/phosphorylas 84.3 0.48 1.6E-05 48.5 2.9 23 519-541 34-56 (205)
384 3lnc_A Guanylate kinase, GMP k 84.3 0.41 1.4E-05 49.4 2.5 22 519-540 27-48 (231)
385 3ez2_A Plasmid partition prote 84.3 0.85 2.9E-05 51.3 5.3 51 505-555 84-150 (398)
386 3cmw_A Protein RECA, recombina 84.3 0.58 2E-05 62.0 4.3 44 519-563 383-426 (1706)
387 1vht_A Dephospho-COA kinase; s 84.2 0.49 1.7E-05 48.2 3.0 20 521-540 6-25 (218)
388 2xzl_A ATP-dependent helicase 83.9 0.43 1.5E-05 59.0 2.8 109 265-381 123-235 (802)
389 1z6t_A APAF-1, apoptotic prote 83.4 0.88 3E-05 53.8 5.2 36 507-542 130-170 (591)
390 2v9p_A Replication protein E1; 83.3 0.66 2.3E-05 50.6 3.7 34 519-556 126-159 (305)
391 3gmt_A Adenylate kinase; ssgci 83.2 0.58 2E-05 48.9 3.1 22 522-543 11-32 (230)
392 3cwq_A Para family chromosome 83.2 0.94 3.2E-05 46.2 4.6 32 521-554 3-34 (209)
393 2f6r_A COA synthase, bifunctio 83.2 0.52 1.8E-05 50.6 2.8 20 521-540 77-96 (281)
394 3igf_A ALL4481 protein; two-do 83.1 0.68 2.3E-05 52.0 3.8 35 521-556 4-38 (374)
395 1pzn_A RAD51, DNA repair and r 83.0 0.53 1.8E-05 52.3 2.8 25 519-543 131-155 (349)
396 3cmw_A Protein RECA, recombina 83.0 0.95 3.2E-05 59.9 5.6 41 519-560 732-772 (1706)
397 3d3q_A TRNA delta(2)-isopenten 82.8 0.59 2E-05 51.7 3.1 24 520-543 8-31 (340)
398 2hf9_A Probable hydrogenase ni 82.7 0.87 3E-05 46.3 4.2 68 507-579 23-95 (226)
399 1ypw_A Transitional endoplasmi 82.7 0.39 1.3E-05 59.4 1.8 24 520-543 512-535 (806)
400 4e22_A Cytidylate kinase; P-lo 82.7 0.65 2.2E-05 48.9 3.3 24 519-542 27-50 (252)
401 3exa_A TRNA delta(2)-isopenten 82.6 0.5 1.7E-05 51.8 2.3 25 519-543 3-27 (322)
402 2jeo_A Uridine-cytidine kinase 82.5 0.74 2.5E-05 48.1 3.6 23 521-543 27-49 (245)
403 1ypw_A Transitional endoplasmi 82.3 0.47 1.6E-05 58.8 2.3 22 520-541 239-260 (806)
404 3zvl_A Bifunctional polynucleo 82.3 0.48 1.6E-05 54.0 2.1 23 519-541 258-280 (416)
405 1q3t_A Cytidylate kinase; nucl 82.1 0.87 3E-05 47.2 3.9 25 519-543 16-40 (236)
406 1z6g_A Guanylate kinase; struc 82.0 0.76 2.6E-05 47.2 3.4 31 519-553 23-53 (218)
407 3ice_A Transcription terminati 81.9 1.9 6.4E-05 48.6 6.7 61 507-567 159-225 (422)
408 1znw_A Guanylate kinase, GMP k 81.8 0.8 2.7E-05 46.5 3.4 26 517-542 18-43 (207)
409 1odf_A YGR205W, hypothetical 3 81.7 0.8 2.7E-05 49.5 3.6 25 520-544 32-56 (290)
410 2ga8_A Hypothetical 39.9 kDa p 81.6 0.8 2.7E-05 51.0 3.6 23 521-543 26-48 (359)
411 3fkq_A NTRC-like two-domain pr 81.5 1.1 3.6E-05 50.2 4.6 34 521-555 146-179 (373)
412 2h92_A Cytidylate kinase; ross 81.5 0.81 2.8E-05 46.5 3.4 22 520-541 4-25 (219)
413 1nij_A Hypothetical protein YJ 81.3 0.66 2.3E-05 50.7 2.8 34 520-556 5-38 (318)
414 1wcv_1 SOJ, segregation protei 81.2 0.88 3E-05 47.8 3.6 33 521-554 9-41 (257)
415 3l0o_A Transcription terminati 81.2 1.3 4.4E-05 49.9 5.0 38 509-546 162-202 (427)
416 3foz_A TRNA delta(2)-isopenten 81.1 0.66 2.3E-05 50.7 2.6 23 520-542 11-33 (316)
417 1tf7_A KAIC; homohexamer, hexa 81.0 1.5 5.2E-05 51.3 5.9 37 519-555 39-76 (525)
418 3fwy_A Light-independent proto 80.9 1.4 4.9E-05 48.1 5.3 36 519-555 48-83 (314)
419 1s96_A Guanylate kinase, GMP k 80.9 0.87 3E-05 47.1 3.4 24 519-542 16-39 (219)
420 3a8t_A Adenylate isopentenyltr 80.8 0.51 1.7E-05 52.2 1.6 23 520-542 41-63 (339)
421 3la6_A Tyrosine-protein kinase 80.7 1.3 4.4E-05 47.8 4.7 33 521-554 95-127 (286)
422 1a7j_A Phosphoribulokinase; tr 80.4 0.67 2.3E-05 50.1 2.4 25 520-544 6-30 (290)
423 3tmk_A Thymidylate kinase; pho 80.4 0.91 3.1E-05 46.9 3.3 25 519-543 5-29 (216)
424 3k9g_A PF-32 protein; ssgcid, 80.3 0.91 3.1E-05 47.8 3.4 42 521-564 30-73 (267)
425 3aez_A Pantothenate kinase; tr 80.2 0.95 3.2E-05 49.5 3.5 24 520-543 91-114 (312)
426 3pg5_A Uncharacterized protein 80.2 0.83 2.8E-05 50.9 3.1 33 521-554 4-36 (361)
427 3cmu_A Protein RECA, recombina 79.9 1.2 4.2E-05 59.7 5.0 41 519-560 383-423 (2050)
428 2xj4_A MIPZ; replication, cell 79.6 1.2 4.2E-05 47.5 4.2 33 521-554 7-39 (286)
429 3eph_A TRNA isopentenyltransfe 79.6 0.88 3E-05 51.5 3.1 24 520-543 3-26 (409)
430 2ocp_A DGK, deoxyguanosine kin 79.5 0.8 2.7E-05 47.6 2.6 23 521-543 4-26 (241)
431 1sq5_A Pantothenate kinase; P- 79.5 0.98 3.3E-05 49.1 3.3 34 521-554 82-116 (308)
432 3c5k_A HD6, histone deacetylas 79.3 3.4 0.00012 37.9 6.4 59 99-167 24-82 (109)
433 3ld9_A DTMP kinase, thymidylat 79.2 2 6.8E-05 44.6 5.4 41 520-560 22-64 (223)
434 2axn_A 6-phosphofructo-2-kinas 78.8 1.1 3.6E-05 52.7 3.6 24 520-543 36-59 (520)
435 2uzg_A Ubiquitin carboxyl-term 78.3 4.4 0.00015 36.3 6.7 60 99-167 25-86 (97)
436 3hjn_A DTMP kinase, thymidylat 77.7 2.9 9.8E-05 42.3 6.0 33 521-554 2-34 (197)
437 1x6v_B Bifunctional 3'-phospho 77.7 1.9 6.6E-05 51.5 5.4 48 505-553 35-85 (630)
438 3fdi_A Uncharacterized protein 77.6 1.2 4.1E-05 45.3 3.1 26 518-543 5-30 (201)
439 3tqf_A HPR(Ser) kinase; transf 77.1 1.3 4.3E-05 44.4 2.9 22 520-541 17-38 (181)
440 2f1r_A Molybdopterin-guanine d 77.0 0.99 3.4E-05 44.8 2.3 26 520-545 3-28 (171)
441 1sky_E F1-ATPase, F1-ATP synth 76.9 1.8 6.2E-05 49.9 4.6 53 518-570 150-204 (473)
442 3qkt_A DNA double-strand break 76.8 1.3 4.5E-05 48.7 3.4 27 518-544 22-48 (339)
443 2gza_A Type IV secretion syste 76.7 1.3 4.6E-05 49.2 3.5 24 519-542 175-198 (361)
444 3qf7_A RAD50; ABC-ATPase, ATPa 76.4 1.4 4.7E-05 49.2 3.4 26 519-544 23-48 (365)
445 4akg_A Glutathione S-transfera 76.2 1.6 5.4E-05 60.5 4.6 36 506-541 1253-1289(2695)
446 2yv5_A YJEQ protein; hydrolase 76.1 2 6.9E-05 46.5 4.6 31 510-540 156-186 (302)
447 1htw_A HI0065; nucleotide-bind 76.1 1.4 4.9E-05 43.0 3.1 25 519-543 33-57 (158)
448 3ez9_A Para; DNA binding, wing 76.1 0.9 3.1E-05 51.3 1.8 50 505-554 87-152 (403)
449 2pt7_A CAG-ALFA; ATPase, prote 75.7 1.2 3.9E-05 49.2 2.5 24 519-542 171-194 (330)
450 2rcn_A Probable GTPase ENGC; Y 75.4 2.1 7.2E-05 47.7 4.5 29 512-540 208-236 (358)
451 1ihu_A Arsenical pump-driving 74.8 2.5 8.4E-05 50.2 5.3 35 519-554 327-361 (589)
452 2dyk_A GTP-binding protein; GT 74.8 1.6 5.5E-05 41.2 3.0 19 522-540 4-22 (161)
453 1p5z_B DCK, deoxycytidine kina 74.6 0.62 2.1E-05 49.2 0.0 24 520-543 25-48 (263)
454 2f9l_A RAB11B, member RAS onco 74.3 1.6 5.6E-05 43.4 3.1 19 522-540 8-26 (199)
455 2obl_A ESCN; ATPase, hydrolase 74.3 2.3 7.7E-05 47.2 4.4 32 511-542 60-94 (347)
456 1nrj_B SR-beta, signal recogni 73.8 1.7 5.7E-05 43.8 3.1 21 520-540 13-33 (218)
457 1u0l_A Probable GTPase ENGC; p 73.7 2.3 8E-05 45.9 4.4 31 510-540 160-190 (301)
458 4hlc_A DTMP kinase, thymidylat 73.7 3.8 0.00013 41.7 5.7 37 521-559 4-41 (205)
459 2g45_A Ubiquitin carboxyl-term 73.3 8 0.00027 36.6 7.3 66 99-167 34-103 (129)
460 3jux_A Protein translocase sub 73.2 9.2 0.00031 46.4 9.5 71 507-580 78-152 (822)
461 1oix_A RAS-related protein RAB 73.1 1.7 5.8E-05 43.2 2.8 20 521-540 31-50 (191)
462 1z2a_A RAS-related protein RAB 72.9 1.9 6.5E-05 40.9 3.1 19 522-540 8-26 (168)
463 1bif_A 6-phosphofructo-2-kinas 72.7 1.9 6.6E-05 49.6 3.6 24 521-544 41-64 (469)
464 2wji_A Ferrous iron transport 72.7 1.9 6.6E-05 41.4 3.1 20 521-540 5-24 (165)
465 2ius_A DNA translocase FTSK; n 72.6 2.9 0.0001 48.8 5.0 40 519-558 167-209 (512)
466 1kao_A RAP2A; GTP-binding prot 72.4 2 6.8E-05 40.6 3.0 19 522-540 6-24 (167)
467 2ce2_X GTPase HRAS; signaling 71.9 1.9 6.6E-05 40.5 2.8 19 522-540 6-24 (166)
468 2ged_A SR-beta, signal recogni 71.7 2.1 7E-05 42.1 3.0 21 520-540 49-69 (193)
469 1wms_A RAB-9, RAB9, RAS-relate 71.1 2.2 7.5E-05 41.0 3.0 19 522-540 10-28 (177)
470 2onk_A Molybdate/tungstate ABC 70.9 2.2 7.5E-05 44.7 3.2 34 520-554 25-58 (240)
471 1ek0_A Protein (GTP-binding pr 70.9 2.3 7.7E-05 40.4 3.1 19 522-540 6-24 (170)
472 2lv9_A Histone-lysine N-methyl 70.8 3.2 0.00011 37.3 3.8 24 100-124 29-53 (98)
473 1ky3_A GTP-binding protein YPT 70.7 2.3 7.7E-05 41.0 3.0 19 522-540 11-29 (182)
474 1sgw_A Putative ABC transporte 70.6 2.1 7.1E-05 44.1 2.9 35 519-554 35-69 (214)
475 2pcj_A ABC transporter, lipopr 70.6 1.9 6.5E-05 44.6 2.6 35 519-554 30-64 (224)
476 1tq4_A IIGP1, interferon-induc 70.6 2.4 8.3E-05 48.1 3.6 34 508-541 57-91 (413)
477 1g16_A RAS-related protein SEC 70.6 2.2 7.4E-05 40.6 2.8 19 522-540 6-24 (170)
478 2cbz_A Multidrug resistance-as 70.5 2.1 7.1E-05 44.7 2.9 22 519-540 31-52 (237)
479 1u8z_A RAS-related protein RAL 70.4 2.4 8.1E-05 40.1 3.1 19 522-540 7-25 (168)
480 3cr8_A Sulfate adenylyltranfer 70.1 2.7 9.1E-05 49.6 4.0 33 520-552 370-402 (552)
481 1m8p_A Sulfate adenylyltransfe 70.0 3.7 0.00013 48.6 5.2 34 521-554 398-431 (573)
482 2erx_A GTP-binding protein DI- 69.9 2.4 8.3E-05 40.3 3.0 19 522-540 6-24 (172)
483 1dek_A Deoxynucleoside monopho 69.8 6.1 0.00021 41.4 6.3 44 521-570 3-46 (241)
484 3hdt_A Putative kinase; struct 69.7 2.6 8.8E-05 43.7 3.3 24 520-543 15-38 (223)
485 1z0j_A RAB-22, RAS-related pro 69.6 2.5 8.5E-05 40.1 3.0 19 522-540 9-27 (170)
486 2npi_A Protein CLP1; CLP1-PCF1 69.6 2.7 9.3E-05 48.4 3.8 38 518-555 137-175 (460)
487 2nzj_A GTP-binding protein REM 69.5 2.5 8.5E-05 40.5 3.0 19 522-540 7-25 (175)
488 3tif_A Uncharacterized ABC tra 69.5 2.3 7.7E-05 44.4 2.9 35 519-554 31-65 (235)
489 2gks_A Bifunctional SAT/APS ki 69.4 4 0.00014 48.1 5.3 34 521-555 374-407 (546)
490 3q85_A GTP-binding protein REM 69.1 2.6 8.9E-05 40.1 3.1 19 522-540 5-23 (169)
491 1lw7_A Transcriptional regulat 68.9 2.4 8.1E-05 47.1 3.1 23 520-542 171-193 (365)
492 1r2q_A RAS-related protein RAB 68.9 2.7 9.1E-05 39.9 3.1 19 522-540 9-27 (170)
493 2d2e_A SUFC protein; ABC-ATPas 68.8 2.7 9.4E-05 44.1 3.4 36 519-554 29-65 (250)
494 2zej_A Dardarin, leucine-rich 68.7 2.2 7.6E-05 41.8 2.5 19 522-540 5-23 (184)
495 1z08_A RAS-related protein RAB 68.6 2.7 9.1E-05 40.0 3.0 19 522-540 9-27 (170)
496 1c1y_A RAS-related protein RAP 68.5 2.7 9.3E-05 39.7 3.1 19 522-540 6-24 (167)
497 3auy_A DNA double-strand break 68.5 2.5 8.7E-05 47.0 3.2 26 519-544 25-50 (371)
498 1svi_A GTP-binding protein YSX 68.2 2.5 8.5E-05 41.5 2.8 21 520-540 24-44 (195)
499 2lkc_A Translation initiation 67.9 3.2 0.00011 39.9 3.5 21 520-540 9-29 (178)
500 3sop_A Neuronal-specific septi 67.9 2.8 9.7E-05 44.6 3.3 22 522-543 5-26 (270)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=5.2e-172 Score=1581.11 Aligned_cols=799 Identities=78% Similarity=1.286 Sum_probs=720.4
Q ss_pred cCCCccccCccCCCCCCceeecCccCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCCcceeeee
Q psy3251 95 KELPPHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLG 174 (959)
Q Consensus 95 ~~~~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~~n~f~lg 174 (959)
+++|+|||+|||||+|+|||+|++|+||||||||+|+|||||+||||||||||+||||||||||+||||+|||||||+||
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg 81 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 81 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCE
T ss_pred CCCCchhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCcEEEEEeCCcccccccccccCCCCCCccccccccccccccccCCCHHHhhhccCCCHHHHHHHHHHHhhCccc
Q psy3251 175 FIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEA 254 (959)
Q Consensus 175 f~~~~~~~~~~~~cr~~c~~~~~~~~~~~d~~~w~pli~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~le~~w~~~~~~ 254 (959)
|||+|+|+||||+||+||++.+++||+|||+++|||||+|||||||||++|+++||.+||+||++||+||||+||.||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 161 (800)
T 2wjy_A 82 FIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSA 161 (800)
T ss_dssp EEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCTTC
T ss_pred ceecccCceEEEEecCcccccchhhccCCCHHhcccccccccccHhhcCCCCHHHHhhhcCCCHHHHHHHHHHhccCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccccCChHHHHHhhhhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCcc
Q psy3251 255 TFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGY 334 (959)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~y~~~~~y~~~f~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 334 (959)
|++|+|+++.++++++|+++|+|+++|+++|.||+++|++||+.++|++.+.+++++|+.++++|.+++|.++..+
T Consensus 162 ~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 237 (800)
T 2wjy_A 162 TLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTD---- 237 (800)
T ss_dssp CTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCC----
T ss_pred chhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEEEecccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ccccccchhhhhhhhhhhhhhhcccccceeeeeecccccceeeEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEE
Q psy3251 335 QYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHV 414 (959)
Q Consensus 335 ~Y~~~f~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v 414 (959)
.+.++..||.|.|++.+.....|.+.|+|
T Consensus 238 ---------------------------------------------------~~~~l~~GD~v~l~~~~~~~~~~~~~g~V 266 (800)
T 2wjy_A 238 ---------------------------------------------------SDMRLMQGDEICLRYKGDLAPLWKGIGHV 266 (800)
T ss_dssp ---------------------------------------------------C--CCCTTCEEEEEECSSSSCCEEEEEEE
T ss_pred ---------------------------------------------------CCCCCCCCCEEEEEECCCCCCCceeEEEE
Confidence 36789999999999988877789999999
Q ss_pred EecCCCCCCeEEEEeccCCCCCCCCCcceEEEEeeCccHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCC
Q psy3251 415 IKIPDNFGDEVGLELKSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLP 494 (959)
Q Consensus 415 ~~~~~~~~~ev~l~l~~~~~~p~~~~~~~~v~~~~~~~~~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p 494 (959)
+++.+++.++|.+++......|......|.++|+|++++|+||+.||++++.++.+++.++++.++|+..++..++..+|
T Consensus 267 ~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~ 346 (800)
T 2wjy_A 267 IKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLP 346 (800)
T ss_dssp EECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCC
T ss_pred EEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCc
Confidence 99998777899999876666777767789999999999999999999999998888888999999998766555555667
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 495 KHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 495 ~~~~~~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..|..+....||++|++||..++.+++++|+||||||||+|+++++.+|++..+.+||+|||||.|||+|.++|.+.+++
T Consensus 347 ~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 347 KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp SCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred cccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcc
Confidence 76766677889999999999999999999999999999999999999988766789999999999999999999999999
Q ss_pred EEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeecccc
Q psy3251 575 VVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA 654 (959)
Q Consensus 575 vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a 654 (959)
++|+++.+++.+..++...++|..++.......++++.+++.+.+.++..+++.|+.+.+..+..+++.++||++|+.++
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 99999999988888888889999988877777788888887777778877778888888888889999999999999999
Q ss_pred CCcccccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEecc
Q psy3251 655 GDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEV 734 (959)
Q Consensus 655 ~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~ 734 (959)
++..+....||+||||||+|+++|++|+|+..+++++||||||+||||++.+..+...|+..|+|+|+...+..+++|++
T Consensus 507 ~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~ 586 (800)
T 2wjy_A 507 GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQV 586 (800)
T ss_dssp GCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCE
T ss_pred CChhhhcCCCCEEEEECCCCCCcHHHHHHHHhcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehh
Confidence 98888888999999999999999999999998889999999999999999999888999999999999998989999999
Q ss_pred ccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHH
Q psy3251 735 QYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRF 814 (959)
Q Consensus 735 qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~L 814 (959)
||||||+|++|+|..||+|.|.++.....+......++|+.+..|++|+++.|.++....+.|+.|..||+.|.+++..|
T Consensus 587 qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L 666 (800)
T 2wjy_A 587 QYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL 666 (800)
T ss_dssp ECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECCCCCEECSSBSCEECHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcCCceeecCCCCcccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998877766666566788988899999999999988888899999999999999999999
Q ss_pred HHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCcee
Q psy3251 815 IRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLN 894 (959)
Q Consensus 815 l~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLN 894 (959)
++.|+++++|||||||++|+..|++.|...+.+.......|+|+|||+|||+|+|+||+|+||++..+++||+.|+||||
T Consensus 667 ~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLN 746 (800)
T 2wjy_A 667 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN 746 (800)
T ss_dssp HHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHH
T ss_pred HHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhh
Confidence 99999999999999999999999999987765544445689999999999999999999999999888999999999999
Q ss_pred ecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceeeccCcchhhhcccCC
Q psy3251 895 VALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFS 948 (959)
Q Consensus 895 VAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~~~l~~~~~~~~ 948 (959)
||+||||++|+||||+.+|+.+++|+.|++|++++|++++|++++|++++++|+
T Consensus 747 VAlTRAk~~LiIvG~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~~~~~ 800 (800)
T 2wjy_A 747 VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS 800 (800)
T ss_dssp HHHTSEEEEEEEEECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCEECCCCC-
T ss_pred hhHHhhhccEEEEECHHHhccCHHHHHHHHHHHHCCCEEeCCHHHhhhhcccCC
Confidence 999999999999999999999999999999999999999999999999999885
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-170 Score=1563.40 Aligned_cols=795 Identities=56% Similarity=0.992 Sum_probs=697.2
Q ss_pred cCCCccccCccCCCCCCceeecCccCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCCcceeeee
Q psy3251 95 KELPPHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGVRNIFVLG 174 (959)
Q Consensus 95 ~~~~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~~n~f~lg 174 (959)
.++|+|||+|||||+|+|||+|++|+||||||||+|+|||||+||||||||||+||||||||||+||||+|||||||+||
T Consensus 7 ~~~~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg 86 (802)
T 2xzl_A 7 PSASDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLG 86 (802)
T ss_dssp -----CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEE
T ss_pred ccCChhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeee
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCcEEEEEeCCcccccccccccCCCCCCccccccccccccccccCCCHHHhhhccCCCHHHHHHHHHHHhhCccc
Q psy3251 175 FIPAKADSVVVLLCRTPCAAQNSLKDMNWDQEQWKPLIADRSFLSWLVKVPTEQEQQRGRQVTSAQIAKLEEVWKDNAEA 254 (959)
Q Consensus 175 f~~~~~~~~~~~~cr~~c~~~~~~~~~~~d~~~w~pli~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~le~~w~~~~~~ 254 (959)
|||||+|+||||+||+||++. ||+|||+++|||||+|||||||||++|+++||.+||+||++||+||||+||.||+|
T Consensus 87 ~~~~~~~~~~~~~cr~~c~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~~ 163 (802)
T 2xzl_A 87 FVSAKSEAVVVLLCRIPCAQT---KNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDA 163 (802)
T ss_dssp EEC------CEEEETTTTTTC---C---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCCC
T ss_pred eeeccCCceEEEEeCCcccch---hhcCCcHhhCceeecccccchhhccCCCHHHhhhhcCCCHHHHHHHHHHHhhCcCC
Confidence 999999999999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccccCChHHHHHhhhhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCcc
Q psy3251 255 TFQDLEKPGVDEDPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGY 334 (959)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~y~~~~~y~~~f~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 334 (959)
|++|+++++.++++++|+++|+|+.+|+++|.||+++|++||+.++|++.+.+++++|+.++++++++.|.++....
T Consensus 164 ~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 240 (802)
T 2xzl_A 164 TINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFES--- 240 (802)
T ss_dssp CC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC---------
T ss_pred chhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEeccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875333
Q ss_pred ccccccchhhhhhhhhhhhhhhcccccceeeeeecccccceeeEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEE
Q psy3251 335 QYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHV 414 (959)
Q Consensus 335 ~Y~~~f~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v 414 (959)
.+.++..||.|.|++.+.....|.+.|+|
T Consensus 241 ---------------------------------------------------~~~~~~~GD~v~l~~~~~~~~~~~~~g~V 269 (802)
T 2xzl_A 241 ---------------------------------------------------NELKVAIGDEMILWYSGMQHPDWEGRGYI 269 (802)
T ss_dssp ------------------------------------------------------CCCTTCEEEEEECSSSSSCEEEEEEE
T ss_pred ---------------------------------------------------CCCCCCCCCEEEEEECCCCCCceeEEEEE
Confidence 36789999999999988777789999999
Q ss_pred EecCCCCCCeEEEEeccC-CCCCCCCCcceEEEEeeCccHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCC
Q psy3251 415 IKIPDNFGDEVGLELKSS-AGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHL 493 (959)
Q Consensus 415 ~~~~~~~~~ev~l~l~~~-~~~p~~~~~~~~v~~~~~~~~~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~ 493 (959)
+++.++..++|.+++... ...|......|.++|+|++++|+||+.||.+++.++.+++.++++.++|+..++..+...+
T Consensus 270 ~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~l 349 (802)
T 2xzl_A 270 VRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPL 349 (802)
T ss_dssp EECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCC
T ss_pred EEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccccccccC
Confidence 999877678899998643 3346566677999999999999999999999998888888899999999876655555566
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 494 PKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 494 p~~~~~~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
|+.|..+.+..||++|++||..++.+++++|+||||||||+|+++++.+|++.++.+||+|||||.|||+|.+||.+.++
T Consensus 350 p~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~ 429 (802)
T 2xzl_A 350 PKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGL 429 (802)
T ss_dssp CSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred cccccccccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCc
Confidence 77777777789999999999999999999999999999999999999999876678999999999999999999999999
Q ss_pred eEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccc
Q psy3251 574 KVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVG 653 (959)
Q Consensus 574 ~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~ 653 (959)
+++|+++.+++.+...+...++|..++..... .++++..++.+.+.++..+.+.|..+.+..+..+++.++||++|+.+
T Consensus 430 ~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~-~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 508 (802)
T 2xzl_A 430 KVVRLTAKSREDVESSVSNLALHNLVGRGAKG-ELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVG 508 (802)
T ss_dssp CEEECCCGGGTTSCCTTGGGBHHHHHHTTCCT-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTG
T ss_pred cEEeecccchhhhcchhhhhhHHHHHHhhcHH-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhh
Confidence 99999999888888888888888887754332 56677777777777777777777777667778889999999999999
Q ss_pred cCCcccccCCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEec
Q psy3251 654 AGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLE 733 (959)
Q Consensus 654 a~~~~l~~~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~ 733 (959)
+++..+.. .||+||||||+|+++|++|+|+..+++++||||||+||||++.+..+...|+..|+|+|+...+..+++|+
T Consensus 509 ~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~ 587 (802)
T 2xzl_A 509 AGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLE 587 (802)
T ss_dssp GGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECC
T ss_pred cChHHHhc-cCCEEEEECccccchHHHHHHHHhCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEee
Confidence 98877766 99999999999999999999998888999999999999999999888889999999999999888999999
Q ss_pred cccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHH
Q psy3251 734 VQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTR 813 (959)
Q Consensus 734 ~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~ 813 (959)
+||||||+|++|+|..||+|+|.++.....+......++||.+..|++|+++.|.++....++|+.|..||+.|++++..
T Consensus 588 ~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~ 667 (802)
T 2xzl_A 588 VQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITK 667 (802)
T ss_dssp EECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECCCCCEECTTSSSEECHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcCCceeecCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887766666655667898888999999999998888889999999999999999999
Q ss_pred HHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCce
Q psy3251 814 FIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRL 893 (959)
Q Consensus 814 Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRL 893 (959)
|++.|+++++|||||||++|+..|++.|...+.+.......|+|+|||+|||+|+|+||+|+||++...++||+.++|||
T Consensus 668 L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrL 747 (802)
T 2xzl_A 668 LFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRL 747 (802)
T ss_dssp HHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHH
T ss_pred HHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccce
Confidence 99999999999999999999999999998776544444467999999999999999999999999988899999999999
Q ss_pred eecchhhcccEEEEEccccccCCchHHHHHHHHHHcCceeeccCcchhhhcccCC
Q psy3251 894 NVALTRAKYGIIVIGNPKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFS 948 (959)
Q Consensus 894 NVAlTRAK~~LiIvGn~~~L~~~~~W~~ll~~~~~~~~~v~g~~~~l~~~~~~~~ 948 (959)
||||||||++|+||||..+|+++++|+.|++|++++|++++|++++|++++++|.
T Consensus 748 NVAlTRAk~~LiIvg~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (802)
T 2xzl_A 748 NVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLV 802 (802)
T ss_dssp HHHHSSEEEEEEEEECHHHHTTSHHHHHHHHHHHHHTCEEEEETTEEEECCCCCC
T ss_pred eeeHhhhhCeEEEEECHHHhccChHHHHHHHHHHHcCCeecCCHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999874
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=4.7e-102 Score=941.19 Aligned_cols=624 Identities=78% Similarity=1.249 Sum_probs=552.9
Q ss_pred ccccccCChHHHHHhhhhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCccccccccchhhhhhhh
Q psy3251 270 QVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIFGPLVKLEAD 349 (959)
Q Consensus 270 ~~~~~y~~~~~y~~~f~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Y~~~f~pLi~lea~ 349 (959)
||+++|+|+.+|+++|.||+++|++||+.++|++...+++++|+.+++++++++|.++..+
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 61 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTD------------------- 61 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEECTTSCEEEEEECC----------------------
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeeecCCCceEEEEEecccc-------------------
Confidence 6899999999999999999999999999999999999999999999999999999877532
Q ss_pred hhhhhhhcccccceeeeeecccccceeeEeeecccCCCCCCCCCCEEEEEEccCCCCcceeEEEEEecCCCCCCeEEEEe
Q psy3251 350 YDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLEL 429 (959)
Q Consensus 350 ~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~v~~~~~~~~~ev~l~l 429 (959)
.+.++..||.|+|++.+....+|.+.|+|++++++++++|.|++
T Consensus 62 ------------------------------------~~~~~~~Gd~v~l~~~~~~~~~~~~~g~v~~~~~~~~~~v~v~~ 105 (624)
T 2gk6_A 62 ------------------------------------SDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIEL 105 (624)
T ss_dssp ----------------------------------------CCTTCEEEEEECSSSSCCCEEEEEEEECSCSSCSEEEEEE
T ss_pred ------------------------------------cCCcCCCCCEEEEEECCCCCCCcEEEEEEEEecCCCCCEEEEEE
Confidence 26789999999999988877889999999999987778999999
Q ss_pred ccCCCCCCCCCcceEEEEeeCccHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCCCHHH
Q psy3251 430 KSSAGAPTEATTGFSVDFIWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQ 509 (959)
Q Consensus 430 ~~~~~~p~~~~~~~~v~~~~~~~~~~R~~~aL~~~~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ 509 (959)
+.....|......|.++|.|++++|+||+.||++++.++.+++.++++.++|+..++..++..+|..|..+.+..||++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q 185 (624)
T 2gk6_A 106 RSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ 185 (624)
T ss_dssp SCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHH
T ss_pred ccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHH
Confidence 76666676666789999999999999999999999988878888899999998766655566677778777788999999
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCc
Q psy3251 510 VYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSP 589 (959)
Q Consensus 510 ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~ 589 (959)
++||..++.+++++|+||||||||+|+++++.+|++..+.+||+|||||.|||+|.++|.+.+++++|+++.+++.+..+
T Consensus 186 ~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~ 265 (624)
T 2gk6_A 186 VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSP 265 (624)
T ss_dssp HHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCT
T ss_pred HHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccc
Confidence 99999999999999999999999999999999998766789999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEE
Q psy3251 590 VSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILI 669 (959)
Q Consensus 590 ~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VII 669 (959)
+...+++..++.......++++.+++.+.++++..+.+.|+.+.+..+..+++.++||++||.++++..+....||+|||
T Consensus 266 ~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~~~~fd~viI 345 (624)
T 2gk6_A 266 VSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILI 345 (624)
T ss_dssp TTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGTTCCCSEEEE
T ss_pred hhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhhcCCCCEEEE
Confidence 88888888888766666777776666666677777778888888888889999999999999999988888889999999
Q ss_pred ECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCCchhHhhhhhhh
Q psy3251 670 DESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNF 749 (959)
Q Consensus 670 DEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRmhp~I~~f~s~~ 749 (959)
|||+|+++|++|+|+..+++++||||||+||||++.+..+...|+..|+|+|+...+..+++|++||||||+|++|+|..
T Consensus 346 DEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~ 425 (624)
T 2gk6_A 346 DESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI 425 (624)
T ss_dssp TTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHH
T ss_pred ecccccCcHHHHHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHh
Confidence 99999999999999998889999999999999999999888899999999999998888999999999999999999999
Q ss_pred hccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEcc
Q psy3251 750 FYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITP 829 (959)
Q Consensus 750 fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITP 829 (959)
||+|+|.++.....+......++|+.+..|++|+.+.|.++....+.|+.|..||+.|.+++..|++.|+++++||||||
T Consensus 426 fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItp 505 (624)
T 2gk6_A 426 FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITP 505 (624)
T ss_dssp HSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECS
T ss_pred hcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999998877766666566788998899999999999988888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEc
Q psy3251 830 YEGQRAFLVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGN 909 (959)
Q Consensus 830 Y~~Q~~~L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn 909 (959)
|++|+..|++.|...+.+.......|+|+|||+|||+|+|+||+|+||++..+++||+.|+||||||+||||++|+||||
T Consensus 506 y~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~ 585 (624)
T 2gk6_A 506 YEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGN 585 (624)
T ss_dssp CHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEEC
Confidence 99999999999987765544445679999999999999999999999999888899999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHcCceeeccCcchhhhcccCC
Q psy3251 910 PKVLSKQPLWNNLLNFYKEQKVLVEGPLNNLKESLILFS 948 (959)
Q Consensus 910 ~~~L~~~~~W~~ll~~~~~~~~~v~g~~~~l~~~~~~~~ 948 (959)
..+|+++++|+.|++|++++|++++|++++|++++++|+
T Consensus 586 ~~~l~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 624 (624)
T 2gk6_A 586 PKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS 624 (624)
T ss_dssp HHHHTTSHHHHHHHHHHHHTTCCCCSCGGGCCCCCC---
T ss_pred HHHHccChHHHHHHHHHHHCCCEEeCCHHHHhhhcccCC
Confidence 999999999999999999999999999999999999885
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=4.4e-84 Score=787.61 Aligned_cols=530 Identities=29% Similarity=0.407 Sum_probs=410.9
Q ss_pred CCCCCCCCEEEEEEccCCCCcceeEEEEEecCCCCCCeEEEEeccCC--CCCCCCCcceEEEEeeCccHHHHHHHHHHHH
Q psy3251 387 DMRLMQGDELKLRYSYDASKTWSGLGHVIKIPDNFGDEVGLELKSSA--GAPTEATTGFSVDFIWKSTSFDRMQLALRKF 464 (959)
Q Consensus 387 ~~~l~~GD~v~l~~~~~~~~~~~~~g~v~~~~~~~~~ev~l~l~~~~--~~p~~~~~~~~v~~~~~~~~~~R~~~aL~~~ 464 (959)
...+..||.|.|+...... .+...|+|+++.. ++|.|.+.... .........|++++.+++++|+||+.||..+
T Consensus 78 ~~~~~~Gd~v~~~~~~~~~-~~~~~g~v~~~~~---~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l 153 (646)
T 4b3f_X 78 SNSFTSGDIVGLYDAANEG-SQLATGILTRVTQ---KSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIAL 153 (646)
T ss_dssp CCCCCTTCEEEEEETTTTS-CCCEEEEEEEEET---TEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEecCCCC-CceEEEEEEEEeC---CEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHh
Confidence 4578999999998654432 2345688998865 46777775432 2233445679999999999999999999999
Q ss_pred HHhhhhhHHHHHHHhcCCCcchhhcccCCCCCCCCCCCCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 465 AVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 465 ~~~~~~~~~~i~~~llg~~~~~~~~~~~~p~~~~~~~~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..........+++.|+|...+..... ..+..|. ...||++|++||..++. ++++||+||||||||+|++++|.++
T Consensus 154 ~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~~~---~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 154 KKYHSGPASSLIEVLFGRSAPSPASE-IHPLTFF---NTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCCCS---STTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcccCchHHHHHHHcCCCCCCCccc-cCccccc---CCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 86666666778888988653321111 1112222 24799999999999986 6799999999999999999999999
Q ss_pred HHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHH---------
Q psy3251 544 VKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQL--------- 614 (959)
Q Consensus 544 l~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~l--------- 614 (959)
++. +.+||||||||.|||+|++||...+.+++|+|+..+.. ..+...++...+...+....+..+..-
T Consensus 230 ~~~-~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (646)
T 4b3f_X 230 VKQ-GLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLL--ESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNK 306 (646)
T ss_dssp HHT-TCCEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCC--HHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTT
T ss_pred HhC-CCeEEEEcCchHHHHHHHHHHHhcCCceEEecchhhhh--hhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhh
Confidence 986 68999999999999999999999999999999876632 111111222222221111111111100
Q ss_pred ----HHHhccCChH---HHHHHHHHHHHHHHHhhccCceeeeeccccCCcc----cccCCcCEEEEECCCCCChhhhHhh
Q psy3251 615 ----KEETGELSSA---DEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPR----LLKIKFHSILIDESMQATEPECMVP 683 (959)
Q Consensus 615 ----k~~~~~ls~~---~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~----l~~~~fd~VIIDEAsQ~~Epe~Lip 683 (959)
+.+...+... ..+.++........+.+..++||++||.+++... +....||+||||||+|++||++|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lip 386 (646)
T 4b3f_X 307 KTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIP 386 (646)
T ss_dssp C------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhh
Confidence 0000111111 1122233333445567899999999999987643 4456899999999999999999999
Q ss_pred hhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcC--CccEEeccccCCchhHhhhhhhhhccCCccccccc
Q psy3251 684 VILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLG--IRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCA 761 (959)
Q Consensus 684 l~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g--~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~ 761 (959)
+. .++++||||||+||||++.+..+...|++.|+|+|+.... ....+|++||||||+|++|+|..||+|+|.++...
T Consensus 387 L~-~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~ 465 (646)
T 4b3f_X 387 LL-KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSV 465 (646)
T ss_dssp GG-GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTT
T ss_pred cc-ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcch
Confidence 86 5789999999999999999999999999999999998753 33468999999999999999999999999988776
Q ss_pred ccccccCCCC--CCCCCCCCeEEEEcCCc---ceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHH
Q psy3251 762 DERKLSKIDF--PWPVPDKPMLFYVTQGQ---EEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAF 836 (959)
Q Consensus 762 ~~r~~~~~~~--~~p~~~~p~~f~~~~g~---ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~ 836 (959)
..+....... .++....|++|+++.|. +.....+.|+.|..||..|..++..|++.|+++++|||||||++|+.+
T Consensus 466 ~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~ 545 (646)
T 4b3f_X 466 ARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 545 (646)
T ss_dssp TTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHH
T ss_pred hhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHH
Confidence 6655443322 23445689999999885 334456789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccCC
Q psy3251 837 LVQHMQYQGSLPAKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSKQ 916 (959)
Q Consensus 837 L~~~L~~~~~~~~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~~ 916 (959)
|++.|... ..+|+|+|||+|||+|+|+||+|+||||..+.+||+.|+||||||+||||++||||||+.+|+++
T Consensus 546 l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~ 618 (646)
T 4b3f_X 546 LRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNH 618 (646)
T ss_dssp HHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTS
T ss_pred HHHHHHHh-------CCCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCC
Confidence 99998643 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCceeec
Q psy3251 917 PLWNNLLNFYKEQKVLVEG 935 (959)
Q Consensus 917 ~~W~~ll~~~~~~~~~v~g 935 (959)
++|++|++|++++|++..+
T Consensus 619 ~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 619 AFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp HHHHHHHHHHHHSSEEEEG
T ss_pred HHHHHHHHHHHHCCCEeeH
Confidence 9999999999999998765
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.97 E-value=3.3e-30 Score=308.27 Aligned_cols=290 Identities=20% Similarity=0.225 Sum_probs=195.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeeccc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKS 582 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~s 582 (959)
..||++|+.|+..++.+++++|+||||||||+|+..++..+... +.+|+++|||+.|+++|.+++.. ...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ApT~~Aa~~L~e~~~~---~a~------ 257 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCAPTGKAARRLGEVTGR---TAS------ 257 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTS---CEE------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEecCcHHHHHHhHhhhcc---cHH------
Confidence 46999999999999999999999999999999999998777664 78999999999999999987631 110
Q ss_pred ccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccC
Q psy3251 583 REAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662 (959)
Q Consensus 583 re~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~ 662 (959)
++|..+. .. . + +.....-...
T Consensus 258 -----------Tih~ll~------------------------------------------~~---~-~--~~~~~~~~~~ 278 (574)
T 3e1s_A 258 -----------TVHRLLG------------------------------------------YG---P-Q--GFRHNHLEPA 278 (574)
T ss_dssp -----------EHHHHTT------------------------------------------EE---T-T--EESCSSSSCC
T ss_pred -----------HHHHHHc------------------------------------------CC---c-c--hhhhhhcccc
Confidence 1111110 00 0 0 0111112234
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCCc-
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMH- 739 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRmh- 739 (959)
.+|+||||||+|+.... .|+.......++|+|||+.||||+..+ +.|..+.. ..+.+.|+.+||++
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~~~ 347 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQAA 347 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeCCC
Confidence 79999999999998764 244444467899999999999998543 24555555 67889999999998
Q ss_pred -hhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcC
Q psy3251 740 -PELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCG 818 (959)
Q Consensus 740 -p~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g 818 (959)
+.|..+++.+ ..|.+.... ....|+.....++ .+..+.+.+. +
T Consensus 348 ~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~-----~ 391 (574)
T 3e1s_A 348 KNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR-----E 391 (574)
T ss_dssp TCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH-----H
T ss_pred ccHHHHHHHHH-hCCCCcccC------------------CCeEEEeCCCHHH------------HHHHHHHHHh-----c
Confidence 6799987654 444432100 1122332211111 1233333333 5
Q ss_pred CCC-CcEEEEccChHH---HHHHHHHHHhcCCC----------------------Cc---cc------------------
Q psy3251 819 MKP-EQIGVITPYEGQ---RAFLVQHMQYQGSL----------------------PA---KI------------------ 851 (959)
Q Consensus 819 ~~~-~~IgIITPY~~Q---~~~L~~~L~~~~~~----------------------~~---~~------------------ 851 (959)
+.+ .+|.||||.+.. +..+.+.++..-.. +. ..
T Consensus 392 ~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v 471 (574)
T 3e1s_A 392 LGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTV 471 (574)
T ss_dssp TTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEE
T ss_pred cCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEE
Confidence 555 799999998765 44444433321000 00 00
Q ss_pred -------------CCce---EEeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEccccc
Q psy3251 852 -------------YQEI---EVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVL 913 (959)
Q Consensus 852 -------------~~~V---~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L 913 (959)
...+ .+.|||+|||+|+|.||+.++.+.. .+.+++++||||||||+.|+|+|+.+.|
T Consensus 472 ~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~~-----~~l~r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 472 DFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHM-----PMLSRNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp EETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGGG-----GGCCHHHHHHHHHTEEEEEEEEECHHHH
T ss_pred EECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCccc-----cccccceEEEEeeeeeeEEEEEECHHHH
Confidence 0001 1369999999999999999876643 3678999999999999999999998765
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.96 E-value=1.7e-29 Score=307.11 Aligned_cols=309 Identities=18% Similarity=0.218 Sum_probs=179.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc-C-----C
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT-G-----L 573 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~-g-----l 573 (959)
..||++|++||.. ..+..+|.||||||||+|+++++.+|+.. ++.+||++||||.|++++.+||.+. + +
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 4699999999973 36788999999999999999999999986 3468999999999999999999864 1 2
Q ss_pred eEEEeecccc----------------cccCCchhHHHHHHHHHhhhh------hHHH-HHHHHHHHHhc---cCC---h-
Q psy3251 574 KVVRVCAKSR----------------EAIDSPVSFLALHNQIRNMEM------NSEL-KKLLQLKEETG---ELS---S- 623 (959)
Q Consensus 574 ~vvRl~~~sr----------------e~i~~~~~~l~l~~~i~~~~~------~~~l-~kl~~lk~~~~---~ls---~- 623 (959)
.+..+.+-.. ..++.......+...+..... ...+ ..+..++...- .+. .
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhccch
Confidence 2222211000 000000000001111111100 0000 11111111110 000 0
Q ss_pred ---HHHHHHHHHHHH-HHHHhhccCceeeeecccc-CCcccc---cCCcCEEEEECCCCCChhhh--HhhhhhcCCeEEE
Q psy3251 624 ---ADEKRYRMLKKN-AEKSLLDNADVICCTCVGA-GDPRLL---KIKFHSILIDESMQATEPEC--MVPVILGAKQLIL 693 (959)
Q Consensus 624 ---~~~k~~~~l~~~-~e~~lL~~a~VI~~T~~~a-~~~~l~---~~~fd~VIIDEAsQ~~Epe~--Lipl~~~~krvVL 693 (959)
....-|...... .+...++..+++..+.... .++.+. ..+|++|+|||+++++..+. +..+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEE
Confidence 001111111111 1122233333332222211 111111 23699999999999987763 3334445689999
Q ss_pred EccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCC
Q psy3251 694 VGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF 771 (959)
Q Consensus 694 VGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~ 771 (959)
|||++|-. ....|.....|.++... +...+.|+.||||++.|.+++|.+|+.+....+.. . .
T Consensus 246 vGD~~QsI-------y~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~--------~-~ 309 (647)
T 3lfu_A 246 VGDDDQSI-------YGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK--------L-W 309 (647)
T ss_dssp EECGGGCC-------CGGGTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC--------C-B
T ss_pred EcCchhhh-------ccccCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc--------c-c
Confidence 99999922 12345556666666554 45678999999999999999999998754321110 0 0
Q ss_pred CCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHHHHHHH
Q psy3251 772 PWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAFLVQHM 841 (959)
Q Consensus 772 ~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L 841 (959)
+....+.++.++... ....|++.|++.+.+++..|+++++|+||+|++.|...|.+.|
T Consensus 310 ~~~~~~~~~~~~~~~------------~~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l 367 (647)
T 3lfu_A 310 TDGADGEPISLYCAF------------NELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEAL 367 (647)
T ss_dssp CSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHH
T ss_pred cCCCCCCceEEEecC------------ChHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHH
Confidence 111122334443321 1356999999999999999999999999999998876655443
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.95 E-value=8.3e-28 Score=296.00 Aligned_cols=305 Identities=19% Similarity=0.210 Sum_probs=178.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc------CC
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT------GL 573 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~------gl 573 (959)
..||++|++||... .+..+|.|+||||||+|+++++.+|+.. ++.+||++||||+|+++|.+|+.+. ++
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 36999999999863 6788999999999999999999999975 3568999999999999999999763 22
Q ss_pred eEEEeecccc-------c--------ccCCchhHHHH-HHHHHhhhh-------hHHHHHHHHHHHHhccCChH------
Q psy3251 574 KVVRVCAKSR-------E--------AIDSPVSFLAL-HNQIRNMEM-------NSELKKLLQLKEETGELSSA------ 624 (959)
Q Consensus 574 ~vvRl~~~sr-------e--------~i~~~~~~l~l-~~~i~~~~~-------~~~l~kl~~lk~~~~~ls~~------ 624 (959)
.+..+.+... . .+-...+...+ ...+..+.. ..-...+..++... ++..
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~ 165 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNEL--LPPEQFAKRA 165 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTT--CCHHHHTTC-
T ss_pred EEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcC--CCHHHHHHhc
Confidence 2222211000 0 00000000011 111111100 00001111111110 0000
Q ss_pred -------HHHHHHHHHHHH-HHHhhccCceeeeeccccC-Ccccc---cCCcCEEEEECCCCCChhhh-Hhh-hhhcCCe
Q psy3251 625 -------DEKRYRMLKKNA-EKSLLDNADVICCTCVGAG-DPRLL---KIKFHSILIDESMQATEPEC-MVP-VILGAKQ 690 (959)
Q Consensus 625 -------~~k~~~~l~~~~-e~~lL~~a~VI~~T~~~a~-~~~l~---~~~fd~VIIDEAsQ~~Epe~-Lip-l~~~~kr 690 (959)
...-|....+.. ....++..+++..+..... ++.+. ..+|++|+|||+++++..+. |+. +.....+
T Consensus 166 ~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~ 245 (724)
T 1pjr_A 166 STYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN 245 (724)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCe
Confidence 001111111111 1123344444433322211 22221 23799999999999998773 333 3333468
Q ss_pred EEEEccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccC
Q psy3251 691 LILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSK 768 (959)
Q Consensus 691 vVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~ 768 (959)
+++|||++|-.. ...|.....|.++... +...+.|..|||+++.|.+++|.++..+.-....
T Consensus 246 l~vVGD~~QsIY-------~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k--------- 309 (724)
T 1pjr_A 246 ICAVGDADQSIY-------RWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK--------- 309 (724)
T ss_dssp EEEEECGGGCCC-------GGGTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC---------
T ss_pred EEEEECchhhcc-------cccCCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCc---------
Confidence 999999999321 2344455555554432 4567899999999999999999999765322110
Q ss_pred CCCCCC--CCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHH-cCCCCCcEEEEccChHHHHHHHHHH
Q psy3251 769 IDFPWP--VPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIR-CGMKPEQIGVITPYEGQRAFLVQHM 841 (959)
Q Consensus 769 ~~~~~p--~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~-~g~~~~~IgIITPY~~Q~~~L~~~L 841 (959)
..|+ ..+.++.++... ....||..|+..|..++. .|+++++|+||++.+.|...|.+.|
T Consensus 310 --~l~~~~~~g~~i~~~~~~------------~~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 310 --RIWTENPEGKPILYYEAM------------NEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp --CCBCSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHH
T ss_pred --ccccccCCCCceEEEecC------------CHHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHH
Confidence 0111 112344433321 135799999999999986 7899999999999999877665544
No 8
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.95 E-value=3.2e-27 Score=276.12 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=152.3
Q ss_pred CCCCCCCHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 500 PNLPDLNRSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 500 ~~~~~LN~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..+..||+.|++|+..++. .+..+|+||||||||+++.+++..|...+..+|+++||||.|+++|.+++. ..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~---~~ 97 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSG---KE 97 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHS---SC
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhc---cc
Confidence 3456899999999998764 359999999999999999999999988755689999999999999999872 11
Q ss_pred EEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeecccc
Q psy3251 575 VVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA 654 (959)
Q Consensus 575 vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a 654 (959)
.. ++|..+.... .. .... ..+..
T Consensus 98 ~~-----------------T~h~~~~~~~---------------~~--------------------~~~~-~~~~~---- 120 (459)
T 3upu_A 98 AS-----------------TIHSILKINP---------------VT--------------------YEEN-VLFEQ---- 120 (459)
T ss_dssp EE-----------------EHHHHHTEEE---------------EE--------------------CSSC-EEEEE----
T ss_pred hh-----------------hHHHHhccCc---------------cc--------------------cccc-chhcc----
Confidence 11 1221111000 00 0000 00000
Q ss_pred CCcccccCCcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEe
Q psy3251 655 GDPRLLKIKFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRL 732 (959)
Q Consensus 655 ~~~~l~~~~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L 732 (959)
........+++||||||++++... .|+.+.....++++|||+.||+|+..+.. ...+ ..++. ..+...+.|
T Consensus 121 -~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~--~~~l-~~~~~---~~~~~~~~L 193 (459)
T 3upu_A 121 -KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGEN--TAYI-SPFFT---HKDFYQCEL 193 (459)
T ss_dssp -CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSC--SCCC-CGGGT---CTTEEEEEC
T ss_pred -cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcc--hHhH-HHHHh---cCCCcEEec
Confidence 001112378999999999987543 23333335679999999999999876431 0111 11111 125567899
Q ss_pred ccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHH
Q psy3251 733 EVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITT 812 (959)
Q Consensus 733 ~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~ 812 (959)
+.+||+++.|.++++.+..+..+... . ...+-+ +...+. .| +...+.
T Consensus 194 ~~~~R~~~~I~~~a~~lr~g~~~~~~------~----------~~~~~v-~~~~~~-------------~~---~~~~i~ 240 (459)
T 3upu_A 194 TEVKRSNAPIIDVATDVRNGKWIYDK------V----------VDGHGV-RGFTGD-------------TA---LRDFMV 240 (459)
T ss_dssp CCCCCCCCHHHHHHHHHHTTCCCCCE------E----------ETTEEE-EECCSS-------------SS---HHHHHH
T ss_pred eeeeeCCcHHHHHHHHHHcCCCcchh------c----------cCCCCe-EecCch-------------HH---HHHHHH
Confidence 99999999999999987544322110 0 001111 111110 11 233333
Q ss_pred HHHHcCCCCC---cEEEEccChHHHHHHHHHHHh
Q psy3251 813 RFIRCGMKPE---QIGVITPYEGQRAFLVQHMQY 843 (959)
Q Consensus 813 ~Ll~~g~~~~---~IgIITPY~~Q~~~L~~~L~~ 843 (959)
.....+..+. +++||++.++|+..+.+.|..
T Consensus 241 ~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~ 274 (459)
T 3upu_A 241 NYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRK 274 (459)
T ss_dssp HHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchhhceEEEEehHhHHHHHHHHHHH
Confidence 4444333344 999999999999999888765
No 9
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.94 E-value=2.1e-27 Score=286.46 Aligned_cols=343 Identities=18% Similarity=0.219 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeeccc
Q psy3251 506 NRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKS 582 (959)
Q Consensus 506 N~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~s 582 (959)
++.|+.|+..++.+++++|+||||||||+|++.++..|... .+.+|+++|||+.|+++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 67899999999999999999999999999999999888753 35689999999999999999875421000 000000
Q ss_pred ccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccC
Q psy3251 583 REAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKI 662 (959)
Q Consensus 583 re~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~ 662 (959)
+..+... ..++|..+.. .+ ... ..........
T Consensus 230 ~~~~~~~--~~Tih~ll~~---~~------------------~~~-------------------------~~~~~~~~~l 261 (608)
T 1w36_D 230 KKRIPED--ASTLHRLLGA---QP------------------GSQ-------------------------RLRHHAGNPL 261 (608)
T ss_dssp CCSCSCC--CBTTTSCC---------------------------------------------------------CTTSCC
T ss_pred Hhccchh--hhhhHhhhcc---CC------------------Cch-------------------------HHHhccCCCC
Confidence 0000000 0011100000 00 000 0000011123
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhhcCCeEEEEccCCCCCceeechh------HHhhcCcHHHHHHHHHcC--------
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVILGAKQLILVGDHCQLGPVVMCKK------AARAGLSQSLFERLVVLG-------- 726 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~~~krvVLVGD~~QL~Pvv~s~~------a~~~gl~~SLFeRL~~~g-------- 726 (959)
.+++||||||+|+..+. .|+.......++||+||+.||||+..+.. ....|++.++++++....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 341 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCS
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccccc
Confidence 78999999999998764 35555456789999999999999975432 124688899999887642
Q ss_pred ---Cc-----cEEeccccCCchh--HhhhhhhhhccCCcccccccccccccCCCC-C-----------------------
Q psy3251 727 ---IR-----PFRLEVQYRMHPE--LSKFPSNFFYEGSLQNGVCADERKLSKIDF-P----------------------- 772 (959)
Q Consensus 727 ---~~-----~~~L~~qYRmhp~--I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~-~----------------------- 772 (959)
.+ .+.|+++||+++. |..+++.+ ..|........-......+.+ +
T Consensus 342 ~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (608)
T 1w36_D 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 (608)
T ss_dssp TTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHH
Confidence 11 5899999999977 88887654 333221100000000000000 0
Q ss_pred ------CCCCC----CCeEEEE--cCCcceeccCCCcccCHH---------------HH-----HHHHHHHHHHHHcCCC
Q psy3251 773 ------WPVPD----KPMLFYV--TQGQEEIAGSGTSYVNRT---------------EA-----SNVEKITTRFIRCGMK 820 (959)
Q Consensus 773 ------~p~~~----~p~~f~~--~~g~ee~~~~g~S~~N~~---------------EA-----~~V~~iv~~Ll~~g~~ 820 (959)
+|... ....... ..|. .|...+|.. +. +-|+ +.+.-...|+.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~vL~~~~~g~-----~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm-~~~Nd~~~gl~ 494 (608)
T 1w36_D 421 LLQARAEPDLIIQAFNEYQLLCALREGP-----FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM-IARNDSALGLF 494 (608)
T ss_dssp HHHTCCCSSTTHHHHTTEEEEESCSSSS-----SSHHHHHHHHHGGGTSCC-----------------------------
T ss_pred HhhcccCHHHHHHHHhhhhhhCCccCCc-----hhHHHHHHHHHHHhCccCcccccccccccCCCeee-Eeeechhhccc
Confidence 00000 0000100 0110 000001100 00 0011 11111123677
Q ss_pred CCcEEEEccChHHHHHHHHHHHh-cCC---CCc---ccCCceEEeecccCCCccccEEEEEccccCCCCCccCCCCcCce
Q psy3251 821 PEQIGVITPYEGQRAFLVQHMQY-QGS---LPA---KIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRL 893 (959)
Q Consensus 821 ~~~IgIITPY~~Q~~~L~~~L~~-~~~---~~~---~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRL 893 (959)
.++||+|++.... +.-.+.. .+. +.. .......+.|||++||.|+|.||+....... -+.+++.+
T Consensus 495 NGdiG~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~ 566 (608)
T 1w36_D 495 NGDIGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELV 566 (608)
T ss_dssp -------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHH
T ss_pred CCCeEEEEEcCCe---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhH
Confidence 8899999987522 1111110 110 111 1234577999999999999999998765432 14578999
Q ss_pred eecchhhcccEEEEEcccc
Q psy3251 894 NVALTRAKYGIIVIGNPKV 912 (959)
Q Consensus 894 NVAlTRAK~~LiIvGn~~~ 912 (959)
|||+||||+.|+|+|+...
T Consensus 567 Yva~tRa~~~l~l~~~~~~ 585 (608)
T 1w36_D 567 YTAVTRARRRLSLYADERI 585 (608)
T ss_dssp HHHHTTBSSCEEEECCTTH
T ss_pred HhhhhhhhceEEEEECHHH
Confidence 9999999999999998753
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=2.4e-26 Score=281.02 Aligned_cols=302 Identities=17% Similarity=0.177 Sum_probs=169.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc-------CC
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT-------GL 573 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~-------gl 573 (959)
.||++|++||... .+..+|.||||||||+|+++++.+|+.. ++.+||++||||.|+++|.+|+.+. ++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 5899999999853 7888999999999999999999999875 4578999999999999999999763 12
Q ss_pred eEEEeeccccc---------------ccCCchhHHHHHHHHHh--hhh-hHHHHHHHHHHHHhc--cCChH---------
Q psy3251 574 KVVRVCAKSRE---------------AIDSPVSFLALHNQIRN--MEM-NSELKKLLQLKEETG--ELSSA--------- 624 (959)
Q Consensus 574 ~vvRl~~~sre---------------~i~~~~~~l~l~~~i~~--~~~-~~~l~kl~~lk~~~~--~ls~~--------- 624 (959)
.+..+.+.... .+-.......+...+.. +.. ....+.+........ .+...
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 159 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGE 159 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTCCTTHHHHTCCSH
T ss_pred EEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCCCHHHHHHHhhhh
Confidence 22221110000 00000000000000000 000 000111111111000 00000
Q ss_pred HH----HHHHHHHHH-HHHHhhccCceeeeeccccC-Cccc---ccCCcCEEEEECCCCCChhhh-Hh-hhhhcCCeEEE
Q psy3251 625 DE----KRYRMLKKN-AEKSLLDNADVICCTCVGAG-DPRL---LKIKFHSILIDESMQATEPEC-MV-PVILGAKQLIL 693 (959)
Q Consensus 625 ~~----k~~~~l~~~-~e~~lL~~a~VI~~T~~~a~-~~~l---~~~~fd~VIIDEAsQ~~Epe~-Li-pl~~~~krvVL 693 (959)
.. .-|...... .+...++..+++..+..... ++.+ ...+|++|+|||+++++..+. ++ .+.....++++
T Consensus 160 ~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~ 239 (673)
T 1uaa_A 160 RDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTV 239 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEE
Confidence 00 111111111 11122333333322221111 1222 135899999999999987773 33 33334578999
Q ss_pred EccCCCCCceeechhHHhhcCcHHHHHHHHHc--CCccEEeccccCCchhHhhhhhhhhccCCcccccccccccccCCCC
Q psy3251 694 VGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDF 771 (959)
Q Consensus 694 VGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~--g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~ 771 (959)
|||++|-.. ...|-....|.++... +...+.|..|||+++.|.+++|.+|..+..... ..+ .
T Consensus 240 vGD~~QsIy-------~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~-----~~l----~ 303 (673)
T 1uaa_A 240 VGDDDQSIY-------SWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFE-----KRL----F 303 (673)
T ss_dssp ECCGGGCCC-------GGGTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSC-----CCC----C
T ss_pred EeCchhhhh-------hccCCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhccc-----ccc----c
Confidence 999999321 2334455566665542 456789999999999999999999876432110 000 0
Q ss_pred CCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHH-HcCCCCCcEEEEccChHHHH
Q psy3251 772 PWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFI-RCGMKPEQIGVITPYEGQRA 835 (959)
Q Consensus 772 ~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll-~~g~~~~~IgIITPY~~Q~~ 835 (959)
+....+.++.++... ....|++.|+..|..++ ..|+++++|+||++.+.|..
T Consensus 304 ~~~~~g~~i~~~~~~------------~~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~ 356 (673)
T 1uaa_A 304 SELGYGAELKVLSAN------------NEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSR 356 (673)
T ss_dssp BSSCCCCCBEEEECS------------SHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGT
T ss_pred ccCCCCCCceEEecC------------CHHHHHHHHHHHHHHHHhccCCCccCEEEEEechhhHH
Confidence 000112233333221 13578999999999988 67999999999998766543
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.87 E-value=1.8e-21 Score=222.76 Aligned_cols=272 Identities=15% Similarity=0.172 Sum_probs=170.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecccccccCCchhHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQ 598 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~sre~i~~~~~~l~l~~~ 598 (959)
.++++|.||||||||+.+..++. ..++||+|||+.|++++.+++.+.+.. ........+++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~~-----------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASGII-----------VATKDNVRTVDSF 223 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------CCCTTTEEEHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------ccccceEEEeHHh
Confidence 57899999999999999987762 268999999999999999998543210 0000011111111
Q ss_pred HHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcccccCCcCEEEEECCCCCChh
Q psy3251 599 IRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEP 678 (959)
Q Consensus 599 i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~~~fd~VIIDEAsQ~~Ep 678 (959)
+++.. ......+++||||||+++...
T Consensus 224 -----------------------------------------L~~~~-------------~~~~~~~d~liiDE~sm~~~~ 249 (446)
T 3vkw_A 224 -----------------------------------------LMNYG-------------KGARCQFKRLFIDEGLMLHTG 249 (446)
T ss_dssp -----------------------------------------HHTTT-------------SSCCCCCSEEEEETGGGSCHH
T ss_pred -----------------------------------------hcCCC-------------CCCCCcCCEEEEeCcccCCHH
Confidence 11110 011235899999999998755
Q ss_pred hh--HhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCCchhHhhhhhhhhccCCcc
Q psy3251 679 EC--MVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQ 756 (959)
Q Consensus 679 e~--Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRmhp~I~~f~s~~fY~g~L~ 756 (959)
.. ++.+ ..++++|++||++||||+..... ..+..+ |.++. ......+..+|||++.++.|.+.. |++.+.
T Consensus 250 ~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~--~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~V~ 321 (446)
T 3vkw_A 250 CVNFLVEM-SLCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLE--VDEVETRRTTLRCPADVTHFLNQR-YEGHVM 321 (446)
T ss_dssp HHHHHHHH-TTCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCC--CSEEEEECEESSCCHHHHHHHHTT-SSSCCE
T ss_pred HHHHHHHh-CCCCEEEEecCcccccCcccCCC---ccchhh-hhhcc--cCcEEEeeeEeCCCHHHHHHHHhh-cCCceE
Confidence 43 2333 34599999999999999976531 111112 22221 224567899999999999999886 776553
Q ss_pred cccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEccChHHHHH
Q psy3251 757 NGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRFIRCGMKPEQIGVITPYEGQRAF 836 (959)
Q Consensus 757 ~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~Ll~~g~~~~~IgIITPY~~Q~~~ 836 (959)
+... ....+.+....|....... ..++ .--|||+....+..
T Consensus 322 t~s~---------------~~~sv~~~~I~~~~~~~~~-----------------------~~~~-~g~iLtftq~~k~~ 362 (446)
T 3vkw_A 322 CTSS---------------EKKSVSQEMVSGAASINPV-----------------------SKPL-KGKILTFTQSDKEA 362 (446)
T ss_dssp ECCC---------------CCCCEEEEECCCGGGCCTT-----------------------TSCC-CSEEEESSHHHHHH
T ss_pred ECCC---------------cCceEEEeccccccccccc-----------------------cCCC-CCeEEEcCHHHHHH
Confidence 2110 0122223222222111100 0112 23667877777776
Q ss_pred HHHHHHhcCCCCcccCCceE-EeecccCCCccccEEEEEccccCCCCCccCCCCcCceeecchhhcccEEEEEccccccC
Q psy3251 837 LVQHMQYQGSLPAKIYQEIE-VASVDAFQGREKDLIIMSCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK 915 (959)
Q Consensus 837 L~~~L~~~~~~~~~~~~~V~-V~TVd~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~LiIvGn~~~L~~ 915 (959)
+.+ . ++. +.|||++||.|+|.|.+. |.+......|..++.++||||||||.+|.++.-.
T Consensus 363 L~~----~---------G~~~~~Tv~e~QG~tf~~Vtlv--r~~~~~~~l~~~~~~~~~VALTRh~~~L~~~tv~----- 422 (446)
T 3vkw_A 363 LLS----R---------GYADVHTVHEVQGETYADVSLV--RLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVV----- 422 (446)
T ss_dssp HHT----T---------TCCSCEETGGGTTCCEEEEEEE--ECCCSCCTTCSTTCHHHHHHHSSEEEEEEEEESS-----
T ss_pred HHH----h---------CCCCccCHHHcCCcccCeEEEE--ECCCCCcccccCCccceEEEeecCCCEEEEEEec-----
Confidence 653 1 233 889999999999999884 4433223334457889999999999999998632
Q ss_pred CchHHHHHHHHHH
Q psy3251 916 QPLWNNLLNFYKE 928 (959)
Q Consensus 916 ~~~W~~ll~~~~~ 928 (959)
+..|-..|+.++.
T Consensus 423 ~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 423 MDPLVSIIRDLER 435 (446)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CChHHHHHHHhhh
Confidence 4555666666544
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.85 E-value=7e-21 Score=246.51 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
...||++|++||... .+..+|.|+||||||+|++.+|..++.. ...+||++||||.|+++|.+||..
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 357999999999865 7788999999999999999999888876 335899999999999999999965
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.75 E-value=2.3e-17 Score=213.00 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=96.8
Q ss_pred CcCEEEEECCCCCChhhh--Hhhhhh--cCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC
Q psy3251 663 KFHSILIDESMQATEPEC--MVPVIL--GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe~--Lipl~~--~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm 738 (959)
+|++|+|||+++++..+. +-.+.. ....+++|||++|-.. ...|-+...|.++.......+.|.+|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY-------~FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY-------AFRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCC-------GGGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccc-------cCcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 599999999999998773 333332 2468999999999221 22333333444443333567899999999
Q ss_pred chhHhhhhhhhhccCCcc---cccccccc--cccCCCCCCCCC---CCCeEEEEcCCcceeccCCCcccCHHHHHHHHHH
Q psy3251 739 HPELSKFPSNFFYEGSLQ---NGVCADER--KLSKIDFPWPVP---DKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKI 810 (959)
Q Consensus 739 hp~I~~f~s~~fY~g~L~---~~~~~~~r--~~~~~~~~~p~~---~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~i 810 (959)
+++|.+++|.+|-...-. ........ ...+....|+.. ..++.++...+ +.. ...-....||+.+...
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~~~~~~~~ea~~iA~~ 525 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG-ESC---GVGDYQSTMAQVCAAQ 525 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCS-SCC---CTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCC-Ccc---CcchHHHHHHHHHHHH
Confidence 999999999988653210 00000000 000000001000 11233332211 000 0001124688999999
Q ss_pred HHHHHH---------------cCCCCCcEEEEccChHHHHHHHHH
Q psy3251 811 TTRFIR---------------CGMKPEQIGVITPYEGQRAFLVQH 840 (959)
Q Consensus 811 v~~Ll~---------------~g~~~~~IgIITPY~~Q~~~L~~~ 840 (959)
|.+++. .|++++||+||++.+.|...|.+.
T Consensus 526 I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~ 570 (1180)
T 1w36_B 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDA 570 (1180)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHH
Confidence 998886 367889999999988776666554
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.54 E-value=2e-14 Score=145.92 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=104.5
Q ss_pred ccccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHH
Q psy3251 733 EVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITT 812 (959)
Q Consensus 733 ~~qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~ 812 (959)
++|||++++|.+|++.++.++.- ... ..+.+..|.+.... . ...|+..+.+.+.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~----------~~~---~~~~G~~p~~~~~~-~------------~~~e~~~i~~~I~ 55 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEA----------VTA---FDRQGDLPNVVVTP-N------------FEAGVDQVVDQLA 55 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC---------------------CCCCCCEEEEES-S------------HHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCc----------ccC---CCCCCCCCEEEEeC-C------------HHHHHHHHHHHHH
Confidence 57999999999999988765420 000 01122344433221 1 2457888888887
Q ss_pred HHHHcCCCCCcEEEEccChHHHHHHHHHHHhcCCCC-------cccCCceEEeecccCCCccccEEEEEccccCCCCCcc
Q psy3251 813 RFIRCGMKPEQIGVITPYEGQRAFLVQHMQYQGSLP-------AKIYQEIEVASVDAFQGREKDLIIMSCVRSNDHQGIG 885 (959)
Q Consensus 813 ~Ll~~g~~~~~IgIITPY~~Q~~~L~~~L~~~~~~~-------~~~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~~iG 885 (959)
. ...| +++||||++.+.|...+.+.|...+... ......|.|+|+|.+||.|||.||+..+..... .
T Consensus 56 ~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~---~ 129 (174)
T 3dmn_A 56 M-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY---Q 129 (174)
T ss_dssp H-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---C
T ss_pred H-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---C
Confidence 7 5555 6899999999999999999998664311 112357999999999999999999988765421 1
Q ss_pred CCCCcCceeecchhhcccEEEEEcc
Q psy3251 886 FLNDPRRLNVALTRAKYGIIVIGNP 910 (959)
Q Consensus 886 Fl~d~rRLNVAlTRAK~~LiIvGn~ 910 (959)
...++|+||||+||||+.|+|++..
T Consensus 130 ~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 130 REDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp SGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred ChhhhceeEEEecCcccEEEEEeCC
Confidence 2457899999999999999999864
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.32 E-value=2.2e-11 Score=157.44 Aligned_cols=155 Identities=10% Similarity=0.102 Sum_probs=95.1
Q ss_pred cCEEEEECCCCCChhhh-Hh-hhhhcCCeEE--EEccCCCCCcee-echhHHhhcCcHHHHHHHHH-cCC---ccEEecc
Q psy3251 664 FHSILIDESMQATEPEC-MV-PVILGAKQLI--LVGDHCQLGPVV-MCKKAARAGLSQSLFERLVV-LGI---RPFRLEV 734 (959)
Q Consensus 664 fd~VIIDEAsQ~~Epe~-Li-pl~~~~krvV--LVGD~~QL~Pvv-~s~~a~~~gl~~SLFeRL~~-~g~---~~~~L~~ 734 (959)
.++|+|||+++.+..+. ++ .+...++++. +|||+.+.+... ........|-....|.++.. .+. ..+.|..
T Consensus 202 ~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~~ 281 (1166)
T 3u4q_B 202 GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGT 281 (1166)
T ss_dssp TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECSC
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCcccceecCC
Confidence 38999999999998773 33 3333455555 669943321000 00111222222333444433 233 3688999
Q ss_pred ccCCchhHhhhhhhhhccCCcccccccccccccCCCCCCCCCCCCeEEEEcCCcceeccCCCcccCHHHHHHHHHHHHHH
Q psy3251 735 QYRMHPELSKFPSNFFYEGSLQNGVCADERKLSKIDFPWPVPDKPMLFYVTQGQEEIAGSGTSYVNRTEASNVEKITTRF 814 (959)
Q Consensus 735 qYRmhp~I~~f~s~~fY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~g~S~~N~~EA~~V~~iv~~L 814 (959)
|||+++.|..+.++.+.... ..+|+..+.++.++.... ...|++.|+..|.++
T Consensus 282 nyRs~~~il~~i~~~~~~~~---------------~~~~~~~~~~i~i~~~~~------------~~~Ea~~ia~~I~~l 334 (1166)
T 3u4q_B 282 ERHTKTPELAHLEAQYEARP---------------AIPYAEKQEALTVMQAAN------------RRAELEGIAREIHAL 334 (1166)
T ss_dssp STTTTCHHHHHHHHSSSCSS---------------CCCCCSCCSSEEEEEESS------------HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhHhhcC---------------CCccCCCCCCeEEEEcCC------------hHHHHHHHHHHHHHH
Confidence 99999999988766543110 011222223333333221 246899999999999
Q ss_pred HH-cCCCCCcEEEEccCh-HHHHHHHHHHHhcC
Q psy3251 815 IR-CGMKPEQIGVITPYE-GQRAFLVQHMQYQG 845 (959)
Q Consensus 815 l~-~g~~~~~IgIITPY~-~Q~~~L~~~L~~~~ 845 (959)
+. .|+++++|+||++.+ .|...|...|...+
T Consensus 335 ~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~g 367 (1166)
T 3u4q_B 335 VREKGYRYKDVAILARQPEDYKDMVKEVFADYE 367 (1166)
T ss_dssp HHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTT
T ss_pred HHhcCCChhheEEEeCChHHHHHHHHHHHHHcC
Confidence 88 799999999999998 58888888887654
No 16
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.74 E-value=7.8e-08 Score=102.11 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe-EEEee
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK-VVRVC 579 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~-vvRl~ 579 (959)
..|++.|.+|+..++..+-.+|.||+|+|||.++..++..+ +.++|+++|+...++++.+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 47999999999998887779999999999999987766543 678999999999999999998877666 55544
No 17
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.71 E-value=6.3e-08 Score=105.15 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC----eEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL----KVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl----~vvRl~ 579 (959)
.|++.|.+|+..++..+-.+|.+|+|+|||.++..++..++..+..++|+++|+...+++..+++.+.+. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 6889999999998887778999999999999998888777766556999999999999999999887533 222222
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcc-
Q psy3251 580 AKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPR- 658 (959)
Q Consensus 580 ~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~- 658 (959)
...... ......++|+++|........
T Consensus 193 ~~~~~~----------------------------------------------------~~~~~~~~I~v~T~~~l~~~~~ 220 (282)
T 1rif_A 193 GGASKD----------------------------------------------------DKYKNDAPVVVGTWQTVVKQPK 220 (282)
T ss_dssp TTCSST----------------------------------------------------TCCCTTCSEEEECHHHHTTSCG
T ss_pred CCCcch----------------------------------------------------hhhccCCcEEEEchHHHHhhHH
Confidence 111000 012356788998876543321
Q ss_pred cccCCcCEEEEECCCCCChhh
Q psy3251 659 LLKIKFHSILIDESMQATEPE 679 (959)
Q Consensus 659 l~~~~fd~VIIDEAsQ~~Epe 679 (959)
..-..|++||||||..+..+.
T Consensus 221 ~~~~~~~~vIiDEaH~~~~~~ 241 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLATGKS 241 (282)
T ss_dssp GGGGGEEEEEEETGGGCCHHH
T ss_pred HHHhhCCEEEEECCccCCccc
Confidence 112368999999998888664
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.69 E-value=4.2e-08 Score=101.14 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccHHHHHH-HHHHHHhc---CC
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSNIAVDQ-LTEKIHRT---GL 573 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN~AvD~-L~erL~~~---gl 573 (959)
..|++.|.+|+..++...-.+|.||+|||||.++...+..++.. .+.++|+++|+...+++ +.+.+.+. ++
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 111 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY 111 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTS
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCc
Confidence 36899999999999988889999999999999988887766543 25789999999999888 55555432 44
Q ss_pred eEEEe
Q psy3251 574 KVVRV 578 (959)
Q Consensus 574 ~vvRl 578 (959)
++..+
T Consensus 112 ~v~~~ 116 (216)
T 3b6e_A 112 RVIGL 116 (216)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 55444
No 19
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.67 E-value=1e-07 Score=97.84 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHH-----ccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK-----QTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~-----~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|+|||||.+....+...+. ..+.++|+++|+...+.++.+++.+.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 4688999999999998888999999999999986555544432 24568999999999999999999876
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.61 E-value=6.8e-08 Score=99.24 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++.|.+|+..++...-.+|.+|+|||||.+....+...+.. .+.++|+++||...+.++.+++.+.
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 346899999999999988889999999999998765444433322 3458999999999999999988764
No 21
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.59 E-value=1.9e-07 Score=97.31 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHHc-cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~-~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|+|||||.+....+.+ +... .+.++|+++|+...+.++.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 3588999999999998888999999999999885444333 3222 3468999999999999999988764
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.58 E-value=2.3e-07 Score=97.66 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHH-----ccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVK-----QTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~-----~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
...+++.|.+|+..++...-.+|.+|.|||||.+....+.. +.. ..+.++|+++||...+.++.+++.+.+
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 44689999999999998888999999999999986554444 433 246789999999999999999987653
No 23
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.57 E-value=3.2e-07 Score=95.32 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. ++.++|+++||...++++.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 35889999999999988889999999999998876666555433 2348999999999999999988764
No 24
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.56 E-value=4.3e-07 Score=96.92 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHHHc-cCCCEEEEcccHHHHHHHHHHHHhc----CCeEE
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVY-QLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT----GLKVV 576 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~----gl~vv 576 (959)
..+++.|.+|+..++...-.++.+|.|||||.+....+. .+... .+.++|+++||...+.++.+++.+. ++++.
T Consensus 64 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~ 143 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSA 143 (249)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 468999999999999888899999999999998655444 44443 2457999999999999999888654 45544
Q ss_pred Ee
Q psy3251 577 RV 578 (959)
Q Consensus 577 Rl 578 (959)
.+
T Consensus 144 ~~ 145 (249)
T 3ber_A 144 VI 145 (249)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.55 E-value=2.2e-07 Score=97.30 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHH-------ccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVK-------QTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~-------~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++.|.+|+..++...-.+|.+|.|||||.+....+.. +.. ..+.++|+++||...+.++.+++.+.
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 578999999999998888899999999999885544433 322 14678999999999999999998874
No 26
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.53 E-value=1.3e-06 Score=93.04 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-----------cCCCEEEEcccHHHHHHHHHHH
Q psy3251 500 PNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-----------TGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 500 ~~~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----------~~~rILV~ApSN~AvD~L~erL 568 (959)
.++..+++.|.+|+..++...-.++.+|.|||||.+....+...+.. .+.++|+++||...+.++.+++
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 34567899999999999988889999999999999866555544432 2358999999999999999988
Q ss_pred Hhc
Q psy3251 569 HRT 571 (959)
Q Consensus 569 ~~~ 571 (959)
.+.
T Consensus 121 ~~~ 123 (253)
T 1wrb_A 121 QKF 123 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 27
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.51 E-value=4.7e-07 Score=97.36 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH-HHH-----ccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ-LVK-----QTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~-----~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++-|.+|+..++...-.+|+||.|||||.+....+.. +.+ ..+.++|+++||...+.++.+++.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4589999999999998878899999999999986554444 443 24678999999999999999998764
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.50 E-value=5.2e-07 Score=100.24 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~-~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|++|+..++.. ...+|.+|+|||||.+....+..++.. ++.++|+++|+...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 36889999999999987 588999999999999877766655543 4678999999999999999998764
No 29
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.49 E-value=3.3e-07 Score=96.81 Aligned_cols=68 Identities=26% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++.|.+|+..++...-.+|.+|+|||||.+....+...+.. .+.++|+++||...+.++.+.+.+.
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 5789999999999988889999999999998855544443322 3568999999999999999998765
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.49 E-value=5.5e-07 Score=103.30 Aligned_cols=67 Identities=27% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|.+.|.+++..++.. -.+|.+|+|+|||.++...+..++...+.++||++|+...+++..+.+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 5889999999999888 889999999999999888887777666789999999999999999999875
No 31
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.48 E-value=6.7e-07 Score=105.08 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC----eEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL----KVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl----~vvRl~ 579 (959)
.|++.|.+||..++...-.+|.||.|+|||.++..++..++..++.++|+++|+...+++..+++.+.+. ++..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 6899999999999987788999999999999998888777766556999999999999999999976521 233332
Q ss_pred cccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCcc-
Q psy3251 580 AKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPR- 658 (959)
Q Consensus 580 ~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~- 658 (959)
+.... . ......++|+++|........
T Consensus 193 ~~~~~-------------------------------------~---------------~~~~~~~~I~i~T~~~l~~~~~ 220 (510)
T 2oca_A 193 GGASK-------------------------------------D---------------DKYKNDAPVVVGTWQTVVKQPK 220 (510)
T ss_dssp GGCCT-------------------------------------T---------------GGGCTTCSEEEEEHHHHTTSCG
T ss_pred cCCcc-------------------------------------c---------------cccccCCcEEEEeHHHHhhchh
Confidence 21000 0 002356889999976554331
Q ss_pred cccCCcCEEEEECCCCCChhh
Q psy3251 659 LLKIKFHSILIDESMQATEPE 679 (959)
Q Consensus 659 l~~~~fd~VIIDEAsQ~~Epe 679 (959)
..-..|++||||||..+....
T Consensus 221 ~~~~~~~liIiDE~H~~~~~~ 241 (510)
T 2oca_A 221 EWFSQFGMMMNDECHLATGKS 241 (510)
T ss_dssp GGGGGEEEEEEETGGGCCHHH
T ss_pred hhhhcCCEEEEECCcCCCccc
Confidence 122368999999999888655
No 32
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.47 E-value=6.5e-07 Score=94.02 Aligned_cols=69 Identities=25% Similarity=0.234 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHH-HHHHHc-cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIV-YQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii-~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|.|||||.+....+ ..+... .+.++|+++||...+.++.+++.+.
T Consensus 45 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 45889999999999888889999999999998854433 333322 3568999999999999999998765
No 33
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.47 E-value=8.6e-07 Score=93.84 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHHHc------cCCCEEEEcccHHHHHHHHHHHHhc---
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVY-QLVKQ------TGSPVLVCAPSNIAVDQLTEKIHRT--- 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~------~~~rILV~ApSN~AvD~L~erL~~~--- 571 (959)
+..+++.|.+|+..++...-.++.+|.|||||.+....+. .+... .+.++|+++||...+.++.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 128 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 4468999999999999888899999999999998554443 44321 3567999999999999998877653
Q ss_pred -CCeEEEe
Q psy3251 572 -GLKVVRV 578 (959)
Q Consensus 572 -gl~vvRl 578 (959)
++++..+
T Consensus 129 ~~~~~~~~ 136 (242)
T 3fe2_A 129 CRLKSTCI 136 (242)
T ss_dssp TTCCEEEE
T ss_pred cCceEEEE
Confidence 5555444
No 34
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.44 E-value=3.6e-07 Score=95.09 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. .+.++|+++||...+.++.+++.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 35789999999999988889999999999998865544444332 3568999999999999999887653
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.43 E-value=1.3e-06 Score=95.88 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..|++.|++|+..++...-.+|.+|+|+|||.+....+.. .+.++|+++|+...+.++.+++.+.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE----LGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH----HTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh----hcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999998888999999999999876554432 2679999999999999999998864
No 36
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.42 E-value=6.7e-07 Score=94.58 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.++.+|.|||||.+....+...+.. .+.++|+++||...+.++.+.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 45889999999999988789999999999999865544444432 3458999999999999999998764
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.39 E-value=9.9e-07 Score=99.76 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..|++.|.+|+..++...-.+|.+|+|||||.+....+...+.. .+.++|+++|+...+.++.+++.+.
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 346899999999999988889999999999998766655544432 3568999999999999999988764
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.39 E-value=9.6e-07 Score=102.70 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe-EEEee
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK-VVRVC 579 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~-vvRl~ 579 (959)
..|++.|.+|+..++..+-.+|.||.|+|||.+....+..+ +.++||++|+...+.+..+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~ 165 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEEC
Confidence 47999999999999887779999999999999987776554 679999999999999999999887666 55544
No 39
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.37 E-value=1.6e-06 Score=97.44 Aligned_cols=76 Identities=22% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc-----CCeE
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT-----GLKV 575 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~-----gl~v 575 (959)
..+++.|.+|+..++...-.+|.+|+|+|||.+....+...+.. .+.++|+++|+...++++.+.+.+. ++++
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 35889999999999988889999999999998866555544432 3458999999999999999888764 4555
Q ss_pred EEe
Q psy3251 576 VRV 578 (959)
Q Consensus 576 vRl 578 (959)
..+
T Consensus 109 ~~~ 111 (391)
T 1xti_A 109 AVF 111 (391)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.37 E-value=1.1e-06 Score=98.79 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..|++.|++|+..++...-.+|.+|.|||||.+....+...+.. .+.++|+++|+...+.++.+.+.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 36889999999999988889999999999998865555444332 3568999999999999999988764
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.36 E-value=1.4e-06 Score=99.33 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc---CCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT---GLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~---gl~vvRl~ 579 (959)
.+++.|.+|+..++...-.+|++|.|||||.+....+..+. ..+.++|+++||...+.++.+++.+. ++++..+.
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~ 98 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 98 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEE
Confidence 36789999999999888899999999999995544444444 35779999999999999999999884 55665554
No 42
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.34 E-value=1.9e-06 Score=96.62 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++.. .-.+|++|.|||||.+....+...+.. .+.++|+++|+...++++.+++.+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999886 789999999999999876665544432 4568999999999999999998864
No 43
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.34 E-value=1.3e-06 Score=104.81 Aligned_cols=71 Identities=30% Similarity=0.317 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHc--------cCCCEEEEcccHHHHHHHH-HHH
Q psy3251 503 PDLNRSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQLVKQ--------TGSPVLVCAPSNIAVDQLT-EKI 568 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--------~~~rILV~ApSN~AvD~L~-erL 568 (959)
..|.+.|.+||..++. .+-.+|.+|.|||||.++..++..+++. ...+||+++|++..+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999998875 4557999999999999998888888775 3578999999999999987 544
Q ss_pred HhcCC
Q psy3251 569 HRTGL 573 (959)
Q Consensus 569 ~~~gl 573 (959)
...+.
T Consensus 257 ~~~~~ 261 (590)
T 3h1t_A 257 TPFGD 261 (590)
T ss_dssp TTTCS
T ss_pred Hhcch
Confidence 44433
No 44
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.30 E-value=2.8e-06 Score=96.47 Aligned_cols=68 Identities=25% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHH--ccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK--QTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~--~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++.|++|+..++...-.+|++|.|||||.+....+.+.+. ..+.++|+++||...+.++.+.+.+.
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 578999999999998888999999999999887666555443 24678999999999999999988764
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.29 E-value=2.3e-06 Score=100.66 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-c---CCCEEEEcccHHHHHHHHHHHHhc----CCeE
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-T---GSPVLVCAPSNIAVDQLTEKIHRT----GLKV 575 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~---~~rILV~ApSN~AvD~L~erL~~~----gl~v 575 (959)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+.+.+.. + +.++||++||...+.+..+.+.+. ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5889999999999988889999999999999987777666655 2 678999999999999998888764 6776
Q ss_pred EEeec
Q psy3251 576 VRVCA 580 (959)
Q Consensus 576 vRl~~ 580 (959)
..+.+
T Consensus 84 ~~~~g 88 (555)
T 3tbk_A 84 ASISG 88 (555)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 66544
No 46
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.27 E-value=2.4e-06 Score=96.83 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. .+.++|+++|+...+.++.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 35889999999999988789999999999999866655544432 4678999999999999999988764
No 47
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.27 E-value=5.5e-06 Score=94.05 Aligned_cols=69 Identities=20% Similarity=0.140 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HHHHHHHcc-------------------CCCEEEEcccHHHHH
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQT-------------------GSPVLVCAPSNIAVD 562 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~-------------------~~rILV~ApSN~AvD 562 (959)
..+++.|.+|+..++...-.+|.+|.|||||.+... ++..+...+ ..++|+++||...+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 357899999999998888899999999999987544 444444332 147999999999999
Q ss_pred HHHHHHHhc
Q psy3251 563 QLTEKIHRT 571 (959)
Q Consensus 563 ~L~erL~~~ 571 (959)
++.+++.+.
T Consensus 116 q~~~~~~~~ 124 (417)
T 2i4i_A 116 QIYEEARKF 124 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.26 E-value=3.7e-06 Score=99.16 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-c---CCCEEEEcccHHHHHHHHHHHHhc----CCe
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-T---GSPVLVCAPSNIAVDQLTEKIHRT----GLK 574 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~---~~rILV~ApSN~AvD~L~erL~~~----gl~ 574 (959)
..|.+.|.+|+..++...-.+|.+|.|||||.+....+.+++.. + +.++||++||...+.+..+.+.+. +++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 36889999999999988889999999999999987777666655 2 678999999999999999888764 666
Q ss_pred EEEeec
Q psy3251 575 VVRVCA 580 (959)
Q Consensus 575 vvRl~~ 580 (959)
+..+.+
T Consensus 86 ~~~~~g 91 (556)
T 4a2p_A 86 VQGISG 91 (556)
T ss_dssp EEECCC
T ss_pred EEEEeC
Confidence 665543
No 49
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.22 E-value=4.9e-06 Score=94.12 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+..+++.|.+|+..++.. .-.+|.+|.|||||.+....+...+.. .+.++|+++|+...+.++.+++.+.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 346899999999999976 789999999999999865544443332 3348999999999999998888764
No 50
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.17 E-value=5.9e-06 Score=100.77 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccC----CCEEEEcccHHHHHHHHHHHHhc----CC
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTG----SPVLVCAPSNIAVDQLTEKIHRT----GL 573 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~----~rILV~ApSN~AvD~L~erL~~~----gl 573 (959)
...|.+.|.+++..++...-++|.+|.|+|||.+....+...+...+ .++||++||...+.+..+.+.+. ++
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGY 90 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCc
Confidence 45689999999999998888999999999999988777766555432 78999999999999998888765 56
Q ss_pred eEEEeec
Q psy3251 574 KVVRVCA 580 (959)
Q Consensus 574 ~vvRl~~ 580 (959)
++..+.+
T Consensus 91 ~v~~~~g 97 (696)
T 2ykg_A 91 RVTGISG 97 (696)
T ss_dssp CEEEECS
T ss_pred eEEEEeC
Confidence 6655543
No 51
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.16 E-value=3.7e-06 Score=100.95 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeecc
Q psy3251 504 DLNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~~ 581 (959)
.++..|.+|+...+. .+..+|.|++|+|||+++-.++..+. .+++|||||..|+..|.+-..+. +++.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~~----i~~~-- 244 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEK----FRFI-- 244 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGGG----CCBC--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhCC----eEEe--
Confidence 689999999998876 67889999999999988877776663 36899999999999887653221 0000
Q ss_pred cccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCCccccc
Q psy3251 582 SREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLK 661 (959)
Q Consensus 582 sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~~~l~~ 661 (959)
. .+. ++. ..
T Consensus 245 ----------------------------------------~-Pd~-------------~~~-----------------~~ 253 (671)
T 2zpa_A 245 ----------------------------------------A-PDA-------------LLA-----------------SD 253 (671)
T ss_dssp ----------------------------------------C-HHH-------------HHH-----------------SC
T ss_pred ----------------------------------------C-chh-------------hhh-----------------Cc
Confidence 0 000 000 01
Q ss_pred CCcCEEEEECCCCCChhhhHhhhhhcCCeEEEEccCCCCCceeechhHHhhcCcHHHHHHHHHcCCccEEeccccCC--c
Q psy3251 662 IKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM--H 739 (959)
Q Consensus 662 ~~fd~VIIDEAsQ~~Epe~Lipl~~~~krvVLVGD~~QL~Pvv~s~~a~~~gl~~SLFeRL~~~g~~~~~L~~qYRm--h 739 (959)
...|+||||||+.+..|- |..+.....+++++...++...+= .||...+...| .....+.|++-.|- +
T Consensus 254 ~~~dlliVDEAAaIp~pl-l~~ll~~~~~v~~~tTv~GYEGtG-------rgf~lk~~~~L--~~~~~~~L~~piR~a~~ 323 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPL-LHQLVSRFPRTLLTTTVQGYEGTG-------RGFLLKFCARF--PHLHRFELQQPIRWAQG 323 (671)
T ss_dssp CCCSEEEEETGGGSCHHH-HHHHHTTSSEEEEEEEBSSTTBBC-------HHHHHHHHHTS--TTCEEEECCSCSSSCTT
T ss_pred ccCCEEEEEchhcCCHHH-HHHHHhhCCeEEEEecCCcCCCcC-------cccccccHhhc--CCCcEEEccCceecCCC
Confidence 258999999999998765 334444557999999988844321 12222222222 34667899999887 5
Q ss_pred hhHhhhhhhhhc
Q psy3251 740 PELSKFPSNFFY 751 (959)
Q Consensus 740 p~I~~f~s~~fY 751 (959)
-.|-.|.++.+-
T Consensus 324 DplE~wl~~~ll 335 (671)
T 2zpa_A 324 CPLEKMVSEALV 335 (671)
T ss_dssp CHHHHHHHHHHT
T ss_pred CCHHHHHHHhhC
Confidence 589999888764
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.15 E-value=4.2e-06 Score=102.72 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh---cCCeEEE
Q psy3251 502 LPDLNRSQVYAVKH-AIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR---TGLKVVR 577 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~-al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~---~gl~vvR 577 (959)
+..|++.|.+|+.. ...+...+|.||.|||||+++...+...+...+.++++++|+...+.+..+++.. .|+++..
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~ 107 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAM 107 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEE
Confidence 45799999999998 5567889999999999999986666554443467999999999999999999843 2555443
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.14 E-value=6.1e-06 Score=102.58 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc----CCCEEEEcccHHHHHHHHHHHHhc----CC
Q psy3251 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT----GSPVLVCAPSNIAVDQLTEKIHRT----GL 573 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~----~~rILV~ApSN~AvD~L~erL~~~----gl 573 (959)
...|.+.|.+|+..++...-.+|.+|.|+|||.+....+..++... +.++||++|+...+.+..+.+.+. ++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 3468999999999999888899999999999999877777666652 678999999999999998888764 67
Q ss_pred eEEEeec
Q psy3251 574 KVVRVCA 580 (959)
Q Consensus 574 ~vvRl~~ 580 (959)
++..+.+
T Consensus 326 ~v~~~~g 332 (797)
T 4a2q_A 326 SVQGISG 332 (797)
T ss_dssp CEEEECC
T ss_pred eEEEEeC
Confidence 7766544
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.5e-05 Score=102.14 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
..|++.|.+|+..++.+.-.+|.||.|+|||.+....+...+.. +.++|+++|+...+.+..+++.+...+
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~~~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFGD 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHHHHHHHHHhCC
Confidence 36899999999999888899999999999999877777666654 679999999999999999999875444
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=88.57 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHH-HHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 503 PDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSA-TIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia-~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..+++-|.+|+..++.. .-.++++|.|||||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 35789999999999876 678999999999998744 333333322 2347999999999999998887764
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.10 E-value=1.5e-05 Score=98.20 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc----CC
Q psy3251 504 DLNRSQVYAVKHAIQR------PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT----GL 573 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~------~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~----gl 573 (959)
.|++.|.+|+..++.. .-.+|+||.|||||.+....+...+.. +.++++++||...+.+..+++.+. ++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-GFQTAFMVPTSILAIQHYRRTVESFSKFNI 446 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-TSCEEEECSCHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhhhcCc
Confidence 6999999999987752 367999999999999987777666654 679999999999999999988754 45
Q ss_pred eEEEe
Q psy3251 574 KVVRV 578 (959)
Q Consensus 574 ~vvRl 578 (959)
++..+
T Consensus 447 ~v~~l 451 (780)
T 1gm5_A 447 HVALL 451 (780)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 55444
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.08 E-value=3e-06 Score=103.45 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHcc-C----CCEEEEcccHHHHHHH-HHHHHhcC---Ce
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQT-G----SPVLVCAPSNIAVDQL-TEKIHRTG---LK 574 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-~----~rILV~ApSN~AvD~L-~erL~~~g---l~ 574 (959)
.|.+.|.+|+..++...-.+|.+|.|+|||.+....+..++... . .++||++|+...+.+. .+.+.+.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 68999999999999888899999999999999888777665542 2 7899999999999998 88887653 55
Q ss_pred EEEee
Q psy3251 575 VVRVC 579 (959)
Q Consensus 575 vvRl~ 579 (959)
+..+.
T Consensus 87 v~~~~ 91 (699)
T 4gl2_A 87 VIGLS 91 (699)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55543
No 58
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.08 E-value=4.4e-06 Score=102.63 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh---cCCeEEE
Q psy3251 502 LPDLNRSQVYAVKH-AIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR---TGLKVVR 577 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~-al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~---~gl~vvR 577 (959)
+..|++.|.+|+.. ...+...+|.||.|||||.++...+...+...+.++++++|+..++.+..+++.+ .|+++..
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~ 100 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAM 100 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34689999999998 6678889999999999999875444433332367999999999999999999853 3556554
Q ss_pred e
Q psy3251 578 V 578 (959)
Q Consensus 578 l 578 (959)
+
T Consensus 101 ~ 101 (720)
T 2zj8_A 101 A 101 (720)
T ss_dssp E
T ss_pred e
Confidence 4
No 59
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.07 E-value=2e-05 Score=90.89 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHH-HHHHHHHcc------CCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQT------GSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~------~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.+++-|++|+..++...-.++++|.|||||..... ++..+...+ +.++||++||...+.++.+.+.+.
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 57899999999999888899999999999997544 455555542 458999999999999999988764
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.04 E-value=9.4e-06 Score=102.59 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHc-c---CCCEEEEcccHHHHHHHHHHHHhc----CCe
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ-T---GSPVLVCAPSNIAVDQLTEKIHRT----GLK 574 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~---~~rILV~ApSN~AvD~L~erL~~~----gl~ 574 (959)
..|.+.|.+|+..++...-.+|.+|.|+|||.+....+..++.. + +.++||++||...+.+..+.+.+. +++
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 46889999999999988889999999999999877777665544 2 678999999999999998888764 677
Q ss_pred EEEeec
Q psy3251 575 VVRVCA 580 (959)
Q Consensus 575 vvRl~~ 580 (959)
+..+.+
T Consensus 327 v~~~~G 332 (936)
T 4a2w_A 327 VQGISG 332 (936)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 766644
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.04 E-value=6.7e-06 Score=100.70 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh---cCCeEEEe
Q psy3251 503 PDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR---TGLKVVRV 578 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~---~gl~vvRl 578 (959)
..|++.|.+++...+.+...+|.||.|+|||+++...+...+.. +.++++++|+...+.+..+++.+ .|+++..+
T Consensus 24 ~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 101 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS 101 (702)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 36788999999998888899999999999999986665554443 67999999999999999999843 24555443
No 62
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=83.65 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccC----CCEEEEcccHHHHHHHHHHHHh
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTG----SPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~----~rILV~ApSN~AvD~L~erL~~ 570 (959)
+.+.|.+++..+..+...+|.||.|||||+.+...+.......+ .++++.+|+...+.++.+++..
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 56689999999999999999999999999987766655333322 3799999999999999998865
No 63
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.97 E-value=1.8e-05 Score=92.18 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 503 PDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++-|.+|+..++.. ...+++||.|||||.+....+...+.. .+.++|+++|+...+.++.+.+.+
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 35788999999999875 789999999999998855444333322 233899999999999999877765
No 64
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.97 E-value=4.2e-06 Score=98.62 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 502 LPDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
...+++.|.+|+..++.. .-.+|.||.|||||.+....+...+.. .+.++|+++|++..++++.+++.+.
T Consensus 139 ~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 139 XXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 345788999999999986 789999999999999866655554433 2458999999999999999998764
No 65
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.95 E-value=3.3e-05 Score=91.72 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHH-HHHcc-----CCCEEEEcccHHHHHHHHHHHHh
Q psy3251 502 LPDLNRSQVYAVKHAI--QRPLSLIQGPPGTGKTVTSATIVYQ-LVKQT-----GSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 502 ~~~LN~sQ~~AV~~al--~~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~~-----~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+..+++.|.+|+..++ ...-.++.+|.|||||.+....+.+ +.... +.++|+++||...+.++.+.+.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 3468999999999998 4567899999999999886554444 44332 24899999999999999998875
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.93 E-value=2.5e-05 Score=99.95 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc---CCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT---GLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~---gl~vvRl~ 579 (959)
.+++-|.+|+..++...-.++++|.|||||.+....+..++ ..+.++||++||...+.++.+++.+. ++++..+.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~ 155 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 155 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEEC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 47899999999999888899999999999996655555555 34779999999999999999999983 44554443
No 67
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.93 E-value=2.8e-05 Score=98.65 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc--CCeEEEe
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT--GLKVVRV 578 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~--gl~vvRl 578 (959)
.|++.|.+||..++...-.+|.||.|+|||.+....+..++. .+.++||++|+...+.+..+++.+. ++++..+
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 589999999999998899999999999999987666665555 4678999999999999999999875 3444443
No 68
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.92 E-value=2.3e-05 Score=99.50 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.|++.|.+|+..++...-.+|.+|.|+|||.+....+...+.. +.++|+++|+...+.+..+.+.+.
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-CCeEEEECChHHHHHHHHHHHHHH
Confidence 5999999999999888889999999999999876666555554 689999999999999999988764
No 69
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.91 E-value=4.1e-05 Score=91.58 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHHH-Hcc-----CCCEEEEcccHHHHHHHHHHHHh
Q psy3251 503 PDLNRSQVYAVKHAI--QRPLSLIQGPPGTGKTVTSATIVYQLV-KQT-----GSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al--~~~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~-----~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++-|.+|+..++ ...-.++++|.|||||.+....+...+ ... +.++||++||...+.++.+.+.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 468999999999998 556789999999999998655544443 321 34899999999999999998875
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.84 E-value=4.4e-05 Score=96.77 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHH-HhcCCeEEEe
Q psy3251 503 PDLNRSQVYAVKHAIQR--PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKI-HRTGLKVVRV 578 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al~~--~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL-~~~gl~vvRl 578 (959)
..|.+.|.+|+..++.. +-.|+.++.|+|||.++..++..++.. ...++||++|+ ..+.+....+ ...++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 46899999999998864 467999999999999999988888766 34589999999 7777777777 3445554333
Q ss_pred ecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccCC--
Q psy3251 579 CAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGD-- 656 (959)
Q Consensus 579 ~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~~-- 656 (959)
..... . . .. ......+...+|+++|......
T Consensus 231 ~~~~~------------~------------~---~~--------------------~~~~~~~~~~dIvI~T~~~L~~~~ 263 (968)
T 3dmq_A 231 DDERY------------A------------E---AQ--------------------HDAYNPFDTEQLVICSLDFARRSK 263 (968)
T ss_dssp CHHHH------------H------------H---HH--------------------HTTCSSSTTCSEEEECHHHHHTST
T ss_pred ccchh------------h------------h---hh--------------------hhcccccccCCEEEEcHHHHhhCH
Confidence 21000 0 0 00 0001124567899988665422
Q ss_pred ---cccccCCcCEEEEECCCCCChhh--------hHhhhhhc-CCeEEEEccCCCCC
Q psy3251 657 ---PRLLKIKFHSILIDESMQATEPE--------CMVPVILG-AKQLILVGDHCQLG 701 (959)
Q Consensus 657 ---~~l~~~~fd~VIIDEAsQ~~Epe--------~Lipl~~~-~krvVLVGD~~QL~ 701 (959)
..+....|++||||||..+.... .+..+... ..++.|.|=|.|-.
T Consensus 264 ~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~ 320 (968)
T 3dmq_A 264 QRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLG 320 (968)
T ss_dssp TTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSC
T ss_pred HHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCC
Confidence 12445689999999998875322 23333322 34688888887733
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.78 E-value=7.1e-05 Score=87.51 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHHHHHHHHHHHhc--CCeE
Q psy3251 503 PDLNRSQVYAVKHAI----QRPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIAVDQLTEKIHRT--GLKV 575 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al----~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~AvD~L~erL~~~--gl~v 575 (959)
..|.+.|.+||..+. ...-.++..+.|+|||.++..++..+... ...++||++|+. .+.+..+.+.+. +.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCceE
Confidence 468999999987653 23456788899999999998888877765 346899999965 668887777764 2333
Q ss_pred EEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeeccccC
Q psy3251 576 VRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAG 655 (959)
Q Consensus 576 vRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a~ 655 (959)
..+..... ......++|+++|.....
T Consensus 115 ~~~~g~~~------------------------------------------------------~~~~~~~~ivi~t~~~l~ 140 (500)
T 1z63_A 115 AVFHEDRS------------------------------------------------------KIKLEDYDIILTTYAVLL 140 (500)
T ss_dssp EECSSSTT------------------------------------------------------SCCGGGSSEEEEEHHHHT
T ss_pred EEEecCch------------------------------------------------------hccccCCcEEEeeHHHHh
Confidence 33221100 011345788888876544
Q ss_pred Cc-ccccCCcCEEEEECCCCCChhhh-----HhhhhhcCCeEEEEccCCC
Q psy3251 656 DP-RLLKIKFHSILIDESMQATEPEC-----MVPVILGAKQLILVGDHCQ 699 (959)
Q Consensus 656 ~~-~l~~~~fd~VIIDEAsQ~~Epe~-----Lipl~~~~krvVLVGD~~Q 699 (959)
.. .+....|++||||||..+..+.. +..+ ....++.|.|=|-|
T Consensus 141 ~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 141 RDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp TCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEEEECSSCST
T ss_pred ccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEEEEecCCCC
Confidence 32 35566899999999988765431 2111 23457888888876
No 72
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.74 E-value=0.00011 Score=74.01 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 506 N~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL 568 (959)
+..|..|+...+. +++.+|+|+.||+||.+..+-+..+.+..+.+|.++||+..+...+.+.+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 4679999988874 68999999999999999666666777888999999999999999987754
No 73
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.73 E-value=0.00019 Score=92.32 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHhc----CC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQ----RP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~----~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+++.|.+|+..++. .. -.+|+||.|+|||.++...+..++. .+.++||++||...+.+..+++.+
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-NHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-hCCeEEEEechHHHHHHHHHHHHH
Confidence 479999999998885 22 6899999999999987766655554 467999999999999999998875
No 74
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.69 E-value=0.00011 Score=86.92 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~ 579 (959)
.+.+.|.+|+..++...-.+|.+|.|+|||.+.... .+. ...++||++|+...+.+..+++.+.++++..+.
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp--~l~--~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~ 96 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP--ALL--LNGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHH--HHH--SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHH--HHH--hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEe
Confidence 466789999999998888999999999999754322 222 246899999999999999999999888776554
No 75
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.69 E-value=8.9e-05 Score=88.96 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
.+.+.|.+||..++...-.+|.+|.|+|||.+....+ +. .+.++||++|+...+.+..+++.+.|+++..+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpa--l~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--LC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHH--HT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHH--HH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 4677899999999998889999999999997643322 22 3568999999999999999999998888765543
No 76
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.62 E-value=0.00014 Score=92.95 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
+ +-|.+|+..++...-.+++||.|||||..+.-++..+.. .+.++|+++||...+.++.+++.+.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 5 789999999998888999999999999744444444443 4679999999999999999988754
No 77
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.55 E-value=0.0003 Score=93.64 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHH-HHHHccCCCEEEEcccHHHHHHHHHHHHh-----cCC
Q psy3251 501 NLPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVY-QLVKQTGSPVLVCAPSNIAVDQLTEKIHR-----TGL 573 (959)
Q Consensus 501 ~~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~-~Ll~~~~~rILV~ApSN~AvD~L~erL~~-----~gl 573 (959)
.+..+|+-|.+|+..++. +.-.+|.+|.|+|||.+....+. .|.+.++.++++++|+.+.+.+..+.+.+ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 356799999999999886 45789999999999998755444 45555678999999999999998877753 355
Q ss_pred eEEEe
Q psy3251 574 KVVRV 578 (959)
Q Consensus 574 ~vvRl 578 (959)
++..+
T Consensus 1003 ~V~~l 1007 (1724)
T 4f92_B 1003 KVVLL 1007 (1724)
T ss_dssp CEEEC
T ss_pred EEEEE
Confidence 55444
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.53 E-value=0.00022 Score=84.85 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCHHHHHHHHH---Hh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc----CCeEE
Q psy3251 505 LNRSQVYAVKH---AI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT----GLKVV 576 (959)
Q Consensus 505 LN~sQ~~AV~~---al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~----gl~vv 576 (959)
+-+.|.+++.. ++ .....+|++|.|||||......+. . .+.+|++++||+..++++.+.+... +++++
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l--~--~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSL--E--VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHH--H--HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHH--h--CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45788885553 44 356889999999999776433332 2 3679999999999999999887765 56666
Q ss_pred Eeec
Q psy3251 577 RVCA 580 (959)
Q Consensus 577 Rl~~ 580 (959)
-+.+
T Consensus 80 ~l~g 83 (551)
T 3crv_A 80 FLVG 83 (551)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 5544
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.44 E-value=0.00014 Score=86.42 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=52.7
Q ss_pred CCHHHHHHHHH---Hh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 505 LNRSQVYAVKH---AI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 505 LN~sQ~~AV~~---al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
+.+.|.+++.. ++ .....+|++|.|||||.+. ++..+. .+.+|++++||+..++++.+.+.+.++++..+.+
T Consensus 8 ~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~--l~~~~~--~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 8 LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFV--EVLGMQ--LKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH--HHHHHH--HTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH--HHHHHh--CCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 45678886544 33 4568899999999999643 332232 2579999999999999999999888887776654
Q ss_pred c
Q psy3251 581 K 581 (959)
Q Consensus 581 ~ 581 (959)
+
T Consensus 84 r 84 (540)
T 2vl7_A 84 K 84 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 80
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.41 E-value=0.00025 Score=86.18 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=46.0
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEee
Q psy3251 515 HAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 515 ~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~ 579 (959)
.++.+...++.||+|||||+.+ +..+... .+.++++|+..++.++.+++.+.|+++.-+.
T Consensus 151 r~l~rk~vlv~apTGSGKT~~a---l~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~llt 210 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHA---IQKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLVT 210 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHH---HHHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HhcCCCEEEEEcCCCCCHHHHH---HHHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456678999999999999933 3333433 4569999999999999999999888765443
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.37 E-value=0.0009 Score=81.06 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhc---------CCcEEEEcCCCChHHHHHHHHHHHHHHcc------CCCEEEEcccHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ---------RPLSLIQGPPGTGKTVTSATIVYQLVKQT------GSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~---------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~------~~rILV~ApSN~AvD~L~erL 568 (959)
.|-+.|+++|..... ..-.++.-+.|+|||.++..++..+++.. ..++||++|+ ..+.+-.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 578899999988642 23467888999999999999998888763 2469999997 5666776666
Q ss_pred Hhc---CCeEEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCc
Q psy3251 569 HRT---GLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNAD 645 (959)
Q Consensus 569 ~~~---gl~vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~ 645 (959)
.+. .+.++.+.+..+.. . ...+...... ......++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~---------~------------~~~~~~~~~~--------------------~~~~~~~~ 172 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDE---------I------------DSKLVNFISQ--------------------QGMRIPTP 172 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHH---------H------------HHHHHHHHCC--------------------CSSCCSCC
T ss_pred HHHcCCCeeEEEEeCCCHHH---------H------------HHHHHHHHHh--------------------cCCCCCCc
Confidence 543 23444433211100 0 0000000000 00012467
Q ss_pred eeeeeccccC--CcccccCCcCEEEEECCCCCChhhh--Hhhh--hhcCCeEEEEccCCC
Q psy3251 646 VICCTCVGAG--DPRLLKIKFHSILIDESMQATEPEC--MVPV--ILGAKQLILVGDHCQ 699 (959)
Q Consensus 646 VI~~T~~~a~--~~~l~~~~fd~VIIDEAsQ~~Epe~--Lipl--~~~~krvVLVGD~~Q 699 (959)
|+++|-.... ...+....|++||+|||..+..+.. ...+ .....++.|.|=|-|
T Consensus 173 vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232 (644)
T ss_dssp EEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSG
T ss_pred EEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCccc
Confidence 8888865432 1234556899999999998855432 1111 234568899999887
No 82
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.32 E-value=0.00035 Score=88.52 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHhc--------------CCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQ--------------RPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~--------------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~er 567 (959)
.+.+.|..||..++. ..-.+|+.|.|||||.++..++ .++.. ...+||+++|++.-++++.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 477899999998775 1357999999999999986666 44443 235899999999999999888
Q ss_pred HHhc
Q psy3251 568 IHRT 571 (959)
Q Consensus 568 L~~~ 571 (959)
+...
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 83
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00067 Score=84.30 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHhc--CCe
Q psy3251 503 PDLNRSQVYAVKHAI----QRPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHRT--GLK 574 (959)
Q Consensus 503 ~~LN~sQ~~AV~~al----~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~~--gl~ 574 (959)
..|-+.|.++|..++ ...-.++.-+.|+|||.++..++..+... ...++||++|+ ..+.+..+.+.+. +++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL-STMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT-TTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc-hHHHHHHHHHHHHCCCce
Confidence 368899999998655 45667889999999999998888777543 45689999994 4577777777664 455
Q ss_pred EEEeecccccccCCchhHHHHHHHHHhhhhhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCceeeeecccc
Q psy3251 575 VVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGA 654 (959)
Q Consensus 575 vvRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~l~kl~~lk~~~~~ls~~~~k~~~~l~~~~e~~lL~~a~VI~~T~~~a 654 (959)
++.+.+.... ...++... . .... .........++|+++|-..+
T Consensus 314 v~~~~g~~~~-----------r~~~~~~~--------------~--~~~~----------~~~~~~~~~~dvvitTy~~l 356 (800)
T 3mwy_W 314 CICYMGNQKS-----------RDTIREYE--------------F--YTNP----------RAKGKKTMKFNVLLTTYEYI 356 (800)
T ss_dssp EEECCCSSHH-----------HHHHHHHH--------------S--CSCC---------------CCCCCSEEEECTTHH
T ss_pred EEEEeCCHHH-----------HHHHHHHH--------------h--hccc----------cccccccccCCEEEecHHHH
Confidence 5544332110 00000000 0 0000 00011244678998887654
Q ss_pred CC--cccccCCcCEEEEECCCCCChhhhH--hhh--hhcCCeEEEEccCCC
Q psy3251 655 GD--PRLLKIKFHSILIDESMQATEPECM--VPV--ILGAKQLILVGDHCQ 699 (959)
Q Consensus 655 ~~--~~l~~~~fd~VIIDEAsQ~~Epe~L--ipl--~~~~krvVLVGD~~Q 699 (959)
.. ..+....|++||||||..+..+.+. ..+ .....++.|.|=|-|
T Consensus 357 ~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 357 LKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp HHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred HhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 32 2245668999999999887443321 111 123468899999876
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.17 E-value=0.0011 Score=88.40 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHH-HHHc---------cCCCEEEEcccHHHHHHHHHHH
Q psy3251 500 PNLPDLNRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQ-LVKQ---------TGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 500 ~~~~~LN~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~-Ll~~---------~~~rILV~ApSN~AvD~L~erL 568 (959)
+++..||+-|.+++..++. +.-.||.+|.|+|||.++...+.. |.+. .+.++++++|+.+-|.+..+.+
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 3567899999999999986 567999999999999987554444 4332 2457999999999998887776
Q ss_pred Hh----cCCeEEEe
Q psy3251 569 HR----TGLKVVRV 578 (959)
Q Consensus 569 ~~----~gl~vvRl 578 (959)
.+ .|+++.-+
T Consensus 155 ~~~~~~~gi~V~~~ 168 (1724)
T 4f92_B 155 GKRLATYGITVAEL 168 (1724)
T ss_dssp HHHHTTTTCCEEEC
T ss_pred HHHHhhCCCEEEEE
Confidence 54 46655433
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.05 E-value=0.00089 Score=66.98 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 506 NRSQVYAVKHAI---------QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 506 N~sQ~~AV~~al---------~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
++.|..|+..+. .....+|.||||||||+++..++..+....+.+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 678888887765 1357899999999999999988877764445455443
No 86
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.0015 Score=67.86 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=31.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
.+.++.||.|+|||+.+..++..+... +.+||+..|..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEecc
Confidence 477899999999999999998887765 78999988753
No 87
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.0057 Score=70.24 Aligned_cols=55 Identities=31% Similarity=0.426 Sum_probs=38.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~vv 576 (959)
+.++.||||+|||||++.++..+... +.+|++++ .+ ..|.+++...-...++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~ 156 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 156 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCcee
Confidence 57889999999999999999888765 66776654 33 3455555444344455543
No 88
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.95 E-value=0.0057 Score=70.30 Aligned_cols=55 Identities=31% Similarity=0.370 Sum_probs=39.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~vv 576 (959)
+.+|.||||+|||||++.++..+.+. +.+|++++ .+ ..|++++...-...+++++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 67899999999999999999888765 66776654 33 4556666544444555554
No 89
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.92 E-value=0.00055 Score=82.60 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.+...+++||.|||||...... ++. .+.++|+++||...+.++.+++.+
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~---ll~-~g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA---YAA-QGYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHH-TTCCEEEEESCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH---HHH-CCCeEEEEcchHHHHHHHHHHHHH
Confidence 4567899999999999765433 333 356999999999999999998865
No 90
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.85 E-value=0.00099 Score=80.25 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=47.1
Q ss_pred HHHHHhcCCcEEEEcCCCChHHHHH-HHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 512 AVKHAIQRPLSLIQGPPGTGKTVTS-ATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 512 AV~~al~~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
++..++.....++.+|.|||||.+. ..++..+.. .+.++|+++||...++++.+.+..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhcC
Confidence 3555566788999999999999984 556666655 467999999999999999998863
No 91
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.70 E-value=0.014 Score=59.77 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=44.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHH----HHHHHHHHHHhcCCeEEEeec
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI----AVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~----AvD~L~erL~~~gl~vvRl~~ 580 (959)
..++.+|.+|+|+|||+.+..++...+.+ +.||+++-+-.. .-.++.++| ++.+.+.+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~ 89 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMAT 89 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEccc
Confidence 36899999999999999999999888876 789999976542 222344443 467776664
No 92
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.45 E-value=0.0046 Score=63.21 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.+|.||.|+|||+-+..++...... +.+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 4588999999999999988888877665 6889998875
No 93
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.33 E-value=0.023 Score=69.75 Aligned_cols=73 Identities=23% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl~ 579 (959)
...+-|..++-.++... +.+.+.|||||.+.+.-++. ....+..++|+|||..-|.+.++-+.. .|+++.-+.
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l-~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~ 159 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYL-NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNL 159 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHH-HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 56789999998887766 89999999999876555442 122467899999999999888776643 366655443
No 94
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.28 E-value=0.011 Score=60.96 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 505 LNRSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 505 LN~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.|.....++..... .+..+|.||||||||+++..++..+... +.+++.+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~ 86 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYI 86 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 45566666666553 4678999999999999998888766554 4454444
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.20 E-value=0.0097 Score=60.36 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=26.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
...+|.||||||||+++..++..+... +.+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 578999999999999998888766543 4566554
No 96
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0035 Score=69.14 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
.+..+|.||||||||+++..++..|...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4568899999999999999999887654
No 97
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.02 E-value=0.02 Score=70.04 Aligned_cols=73 Identities=22% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl~ 579 (959)
...+-|..++-.++... +.+.+.|||||.+.+.-++.-. ..+.+++|+|||..-|.+..+-+.. .|+++.-+.
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~-l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH-TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35688999998777655 8899999999987655443212 2467899999999998888776644 366655443
No 98
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.01 E-value=0.014 Score=60.59 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
..+.+|.||-|+|||+.+..++..+... +.++++..|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEecc
Confidence 4578999999999999888887776654 67899998854
No 99
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0083 Score=65.77 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=29.2
Q ss_pred CcCEEEEECCCCCChhh--hHhhhhh-c--CCeEEEEc-cCCCCCceeech
Q psy3251 663 KFHSILIDESMQATEPE--CMVPVIL-G--AKQLILVG-DHCQLGPVVMCK 707 (959)
Q Consensus 663 ~fd~VIIDEAsQ~~Epe--~Lipl~~-~--~krvVLVG-D~~QL~Pvv~s~ 707 (959)
.+.+||||||..++... .|+..+- + ...+||+. ++..+.|.+.+.
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 57999999998887543 4555543 2 23555553 455677776665
No 100
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.94 E-value=0.015 Score=71.40 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEee
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRVC 579 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl~ 579 (959)
...+-|..++-.++... +.+.+.|||||.+.+.-++. ....+.+++|+|||..-|.+.++-+.. .|+++.-+.
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l-~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~ 187 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYL-NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVIL 187 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHH-HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHH-HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 45788999988777655 89999999999876544432 112467899999999998887776643 366655443
No 101
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.0092 Score=62.14 Aligned_cols=53 Identities=30% Similarity=0.482 Sum_probs=40.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.||||+|||+++..++..++.. +.++++.+.... ..++.+++.+.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 4689999999999999999998888765 678888775543 4667777765443
No 102
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.0091 Score=62.23 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
..+++|.|+||+|||+.+..++++.+...+.++++++.... .+++.+++.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~~ 83 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGW 83 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcCC
Confidence 45899999999999999999888766655778988876543 5667777765433
No 103
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.84 E-value=0.01 Score=73.33 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 507 RSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 507 ~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..|++++..++. +..++|.||.|||||+.+..++...... .+.+|++++|+..++.++++++..
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 358888888775 5689999999999999655553322211 145699999999999999998864
No 104
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.83 E-value=0.019 Score=70.45 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEe
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRV 578 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl 578 (959)
..++-|..++-.+++.. +.+...|||||.+.+..++. ....+.+++|+|||..-|.+..+-+.. .|+++.-+
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L-~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i 154 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVAL-NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVI 154 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHH-HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHH-HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999998887766 88999999999876555532 222467899999999998888776654 36665443
No 105
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.83 E-value=0.0083 Score=59.17 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.+.+.+...+. .+..+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555655553 356899999999999999888877654
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.77 E-value=0.019 Score=62.93 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=28.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+..+|.||||||||+++..++..+... +.+++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH
Confidence 468999999999999998888777654 566666643
No 107
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.73 E-value=0.0088 Score=62.69 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.++.||.|+|||+.+..++...... +.+|++..|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeec
Confidence 4578999999999999998888777654 7889998875
No 108
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.65 E-value=0.0053 Score=74.57 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=47.0
Q ss_pred HHHHHHh------cCCcEEEEcCCCChHHHHH-HHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCC
Q psy3251 511 YAVKHAI------QRPLSLIQGPPGTGKTVTS-ATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGL 573 (959)
Q Consensus 511 ~AV~~al------~~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl 573 (959)
.||..++ .....+|+||.|||||.+. ..++..+.. .+.++|+++||...+.++.+++...++
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~~~i 295 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRGLPV 295 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTSCC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhcCCe
Confidence 6666555 5778999999999999985 444444444 467999999999999999999876544
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.63 E-value=0.0093 Score=60.35 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.+|.||||+|||+.+..++..+... +.++++..|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeec
Confidence 4578999999999999998888877665 5788888776
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.55 E-value=0.012 Score=59.45 Aligned_cols=40 Identities=35% Similarity=0.595 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 506 N~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.....+.+...+.. +..+|.||||||||+++..++..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34566666666643 35899999999999998888766643
No 111
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.53 E-value=0.0069 Score=70.21 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=42.6
Q ss_pred cCCcEEEEcCCCChHHHH-HHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVT-SATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
.+...+|.||.|||||.+ +..++..+.. .+.++|+++||...+.++.+++.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc
Confidence 467899999999999998 4555555554 46799999999999999999986
No 112
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.53 E-value=0.009 Score=68.85 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=43.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHH-HHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 517 IQRPLSLIQGPPGTGKTVTSAT-IVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 517 l~~~l~LIqGPPGTGKT~Tia~-ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
+.....+|+||.|||||.+... ++..+.. .+.++|+++||...+.++.+.+...+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhcCC
Confidence 3467789999999999998644 4444444 46799999999999999999987554
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.51 E-value=0.01 Score=58.52 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.+.+.+...+. .+..+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344555555443 356799999999999999888877654
No 114
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.50 E-value=0.011 Score=67.81 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCChHHHHH-HHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTS-ATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Ti-a~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
+...+|+||.|||||.+. ..++..++. .+.++|+++||...++++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC
Confidence 456899999999999986 444545554 46799999999999999998875
No 115
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.007 Score=69.38 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.|+.||||||||.++.+++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999998887554
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.45 E-value=0.015 Score=56.76 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
..|.++..++... .....+|.||+|||||+++..+...+..
T Consensus 22 g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 22 TENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5777777776665 5678899999999999999888866543
No 117
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.43 E-value=0.025 Score=68.06 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=53.7
Q ss_pred CHHHHHHHHH---Hh-cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc----CCeEEE
Q psy3251 506 NRSQVYAVKH---AI-QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT----GLKVVR 577 (959)
Q Consensus 506 N~sQ~~AV~~---al-~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~----gl~vvR 577 (959)
-+.|++.+.. ++ .....++++|.|||||......+...+...+.+|+++++|+.-+.++.+-+... .++++-
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~ 84 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIP 84 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEE
Confidence 3578776653 33 467899999999999977544333333334679999999999999998776543 566666
Q ss_pred eecc
Q psy3251 578 VCAK 581 (959)
Q Consensus 578 l~~~ 581 (959)
+.++
T Consensus 85 l~gr 88 (620)
T 4a15_A 85 MQGR 88 (620)
T ss_dssp CCCH
T ss_pred EECC
Confidence 5543
No 118
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.40 E-value=0.0066 Score=62.58 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.||||||||+++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887654
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.34 E-value=0.013 Score=62.84 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=19.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...+|.||||||||+++..++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999988777643
No 120
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.23 E-value=0.014 Score=62.90 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...+|.||||||||+++..++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999998777643
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.21 E-value=0.025 Score=57.97 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTG 572 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~g 572 (959)
..+++|.||||+|||+++..++..+... +.+|++..... ..+++..++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEE-SRDSIIRQAKQFN 74 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSS-CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEccc-CHHHHHHHHHHhc
Confidence 4578999999999999999998777654 56888876544 2445556655443
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.19 E-value=0.023 Score=62.28 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH-HccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV-KQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~~~rILV~A 555 (959)
....+|+||||||||+++.+++..+. .. +.+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 35688999999999999999998887 54 56666554
No 123
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.18 E-value=0.017 Score=60.48 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.+|.||||+||||.+..++..+... +.+|++..|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEec
Confidence 4578999999999999999998888765 6789988654
No 124
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.17 E-value=0.038 Score=60.51 Aligned_cols=55 Identities=29% Similarity=0.441 Sum_probs=39.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~erL~~~gl~vv 576 (959)
+.+|.||+|+||||++..++..+... +.+|++.+ +...+++++...+...++.++
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~ 163 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHHHHHHHHHHHHcCCcEE
Confidence 57899999999999999999877665 66777664 234556666555555566653
No 125
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.02 E-value=0.021 Score=61.85 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
..+|.||||||||+++..++..+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999998888776553
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.02 E-value=0.017 Score=62.35 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....++.||||||||+++..++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999988777554
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.01 E-value=0.017 Score=64.49 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....|+.||||||||+++..++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999887777554
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.01 E-value=0.022 Score=59.97 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..+|.||||||||+++..++..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999988776543
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.00 E-value=0.019 Score=55.37 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
.....+|+||||||||+++..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999998876653
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.97 E-value=0.019 Score=58.73 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 506 N~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34555666665542 3689999999999999988876654
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.97 E-value=0.022 Score=62.63 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=18.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-.|+.||||||||+++.+++..
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999998777654
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.88 E-value=0.012 Score=63.95 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|++||||||||+++.+++..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999988887665
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.88 E-value=0.022 Score=63.19 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHh-------cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAI-------QRPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 506 N~sQ~~AV~~al-------~~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.+.+.+.+...+ ..+..+|.||||||||+++..++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456667776655 1357899999999999999888877654
No 134
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.83 E-value=0.013 Score=60.10 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|+|+||||||+.++..+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999987766544
No 135
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.82 E-value=0.018 Score=66.45 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=45.0
Q ss_pred HHHHHhc-CCcEEEEcCCCChHHHH-HHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 512 AVKHAIQ-RPLSLIQGPPGTGKTVT-SATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 512 AV~~al~-~~l~LIqGPPGTGKT~T-ia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
++..++. +...+++||.|||||.. +..++..++.. +.++|+++||...+.++.+.+.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-CCcEEEECCCHHHHHHHHHHhc
Confidence 3444554 56779999999999996 66666666553 6799999999999999999875
No 136
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.014 Score=66.94 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=23.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
=.|+.||||||||.++.+++..+ +..++.+..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~ 248 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT----NATFLKLAA 248 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred eeEEECcCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 36899999999999988777554 344444443
No 137
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.69 E-value=0.01 Score=62.95 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.+|.||||||||+++..++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999988877543
No 138
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.60 E-value=0.03 Score=58.56 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.++.|+||+|||+++..++..+... +.+|+++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~ 40 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAG 40 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEE
Confidence 6789999999999999999888876 5677654
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.017 Score=65.56 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
=.|+.||||||||.++.+++..+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh
Confidence 36889999999999988877543
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.058 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
+..+|.||||||||+++..++..+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999998888776543
No 141
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.017 Score=66.29 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
=.|+.||||||||.++.+++..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36889999999999988877554
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.48 E-value=0.067 Score=61.57 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=28.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~Ap 556 (959)
+..+|.||||||||+++..+...+... ++.+++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 468999999999999998888776654 3556665543
No 143
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.47 E-value=0.034 Score=56.65 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=32.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
.+.++.||+|+|||+.+..++..+... +.+|++..|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEec
Confidence 478999999999999999999887755 7899999886
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.40 E-value=0.029 Score=60.88 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 506 N~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 45566666666542 3589999999999999988886654
No 145
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.39 E-value=0.03 Score=61.68 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.-.|+.||||||||+++.+++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 357999999999999988877654
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.35 E-value=0.026 Score=61.11 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.||||||||+++..++..+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 589999999999999887776554
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.33 E-value=0.018 Score=55.43 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
....+|+||||||||+++..+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4568999999999998776554
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.32 E-value=0.03 Score=62.32 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcC-------C--cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQR-------P--LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 507 ~sQ~~AV~~al~~-------~--l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+.+.+.+...+.. . ..+|.||||||||+++..++..+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555555554421 3 789999999999999988776553
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.30 E-value=0.034 Score=58.64 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.+|.||||||||+++..++..+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47899999999999988777543
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.29 E-value=0.037 Score=61.26 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 507 RSQVYAVKHAIQ-------RPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 507 ~sQ~~AV~~al~-------~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
+.+.+.+...+. ....+|.||||||||+++..++..+...
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456666666554 3578999999999999998888766544
No 151
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.25 E-value=0.037 Score=60.72 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
..+++|.|+||+|||+.+..++..++.. +.++|+.+.- ...+++..|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC-CCHHHHHHHHHH
Confidence 4689999999999999999999887765 4788888865 456667777654
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.23 E-value=0.043 Score=58.44 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...||.||||||||+++..++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999998877754
No 153
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.031 Score=65.64 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..||.||||||||+++..++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999988777554
No 154
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.23 E-value=0.039 Score=61.30 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..||.||||||||+++..++..+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999888876653
No 155
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=94.20 E-value=0.031 Score=71.80 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=57.9
Q ss_pred CCceEEeecccCCCccccEEEEEccccCCCC----CccC--------C-------CCcCceeecchhhcccEEEEEcccc
Q psy3251 852 YQEIEVASVDAFQGREKDLIIMSCVRSNDHQ----GIGF--------L-------NDPRRLNVALTRAKYGIIVIGNPKV 912 (959)
Q Consensus 852 ~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~~----~iGF--------l-------~d~rRLNVAlTRAK~~LiIvGn~~~ 912 (959)
...|.|+|+|.++|.|+|+|++..+..+.-. .-+| . .++|.+||||||||+.|+|......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 5689999999999999999999988765321 1123 1 1345699999999999999976532
Q ss_pred ------ccCCchHHHHHHHHHH
Q psy3251 913 ------LSKQPLWNNLLNFYKE 928 (959)
Q Consensus 913 ------L~~~~~W~~ll~~~~~ 928 (959)
...+.+...+..++..
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCCCCcCCCCHHHHHHHHHHHH
Confidence 2336788888888765
No 156
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.023 Score=64.75 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
=.|+.||||||||.++.+++..+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHHh
Confidence 36889999999999988877554
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.09 E-value=0.043 Score=59.81 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+.+|.||+|+||||++..++..+....+.+|++++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 478899999999999999999887754567887775
No 158
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.08 E-value=0.054 Score=58.49 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.||||+|||+++..++..+....+.+|++...... ..++..|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 46899999999999999999988777654568888765432 234555543
No 159
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.06 E-value=0.075 Score=57.92 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=39.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc---HHHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS---NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS---N~AvD~L~erL~~~gl~vv 576 (959)
+.++.|++|+||||++..++..+... +.+|++...- +.|.+++.......+++++
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~ 157 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEE
Confidence 56788999999999999999887765 6788777543 4566666544444566654
No 160
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.03 E-value=0.038 Score=60.36 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQR----PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 505 LN~sQ~~AV~~al~~----~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++...+.+...+.. ++.|+.||||||||+++..++..+
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356667777776642 456778889999999988776544
No 161
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.03 E-value=0.11 Score=62.93 Aligned_cols=64 Identities=33% Similarity=0.468 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHh---cCC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAI---QRP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al---~~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
.++..|..|+.... ..+ ..++.|.+|||||.|++.++..+ +.++||+|++...+.+|.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 46778988887654 233 45789999999999999887554 468999999999999999999876
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.02 E-value=0.038 Score=61.03 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...++.||||||||+++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999987777544
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.01 E-value=0.033 Score=61.16 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+..||.||||||||+++..++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999998777543
No 164
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.99 E-value=0.037 Score=58.66 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
....+|.||||||||+++..+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 567899999999999987776643
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.99 E-value=0.024 Score=62.20 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCCCEEEEcccHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGSPVLVCAPSNIA 560 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~rILV~ApSN~A 560 (959)
.++++|.||||||||+++..++....+. .+.+++.+..-+..
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 4578999999999999999999888875 35677777654433
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.98 E-value=0.053 Score=62.64 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.|+||+|||+.+..++..+....+.+|++.+.-.. ..++..|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHH
Confidence 46899999999999999999998888755678999886543 356666654
No 167
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.97 E-value=0.037 Score=60.74 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=24.5
Q ss_pred HHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 509 QVYAVKHAI-QRPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 509 Q~~AV~~al-~~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+++..++ .....++.||||||||+++..++..
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 334444333 4678899999999999998777644
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.94 E-value=0.034 Score=62.16 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL 568 (959)
..+++|.||||+|||+++..++..+... +.+|+.++.-...-...++++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchHHHHHc
Confidence 3478999999999999999999877764 567877765543333344443
No 169
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.049 Score=60.11 Aligned_cols=39 Identities=31% Similarity=0.539 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhcC-Cc--EEEEcCCCChHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR-PL--SLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 506 N~sQ~~AV~~al~~-~l--~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
++...+.+...+.. .+ .++.||||||||+++..++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34445555555543 33 89999999999999988887664
No 170
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.91 E-value=0.08 Score=61.90 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=41.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc---cHHHHHHHHHHHHhcCCeEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP---SNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap---SN~AvD~L~erL~~~gl~vvR 577 (959)
..+|.|+||+||||++..+++.+.+. +.+|++++. ...|++.+...-.+.++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 46788999999999999999888775 677777754 566777765544455666554
No 171
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.87 E-value=0.044 Score=61.41 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....++.||||||||+++..++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999887777544
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.82 E-value=0.045 Score=61.06 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=19.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.||.||||||||+++.+++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999988777654
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.025 Score=65.11 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
=.|+.||||||||.++.+++..+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc
Confidence 36899999999999887777543
No 174
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.80 E-value=0.08 Score=60.80 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=40.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHHHHHHhcCCeEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~erL~~~gl~vvR 577 (959)
..+|.|++|+|||||++.+++.+....+.+|++++ +...|.+++...-...+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~ 161 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe
Confidence 56678999999999999999988876467877764 3346666654333344566543
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.78 E-value=0.047 Score=58.97 Aligned_cols=39 Identities=36% Similarity=0.619 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 506 N~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
++...+.+...+.. +..++.||||||||+++..++..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 45566666665542 3489999999999999988887764
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.78 E-value=0.037 Score=60.90 Aligned_cols=37 Identities=38% Similarity=0.601 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 508 SQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 508 sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345566666542 4589999999999999988887664
No 177
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.76 E-value=0.036 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999987776443
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.75 E-value=0.047 Score=60.92 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...||.||||||||+++..++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999998877643
No 179
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.70 E-value=0.03 Score=60.91 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...+|.||||||||+++..++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45799999999999998877754
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.70 E-value=0.05 Score=61.36 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHh---------------cCCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAI---------------QRPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 506 N~sQ~~AV~~al---------------~~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+++++...+ .....||.||||||||+++..++..
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 455666666655 1246899999999999988777543
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.65 E-value=0.039 Score=60.06 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...+|.||||||||+++..+...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999988877543
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.038 Score=61.03 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHh-cC---CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEE
Q psy3251 506 NRSQVYAVKHAI-QR---PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVL 552 (959)
Q Consensus 506 N~sQ~~AV~~al-~~---~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rIL 552 (959)
++...+++..++ .. +..+|.||||||||+++..++..+.......+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 556666777766 32 348999999999999998888766543333443
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.51 E-value=0.066 Score=61.61 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.|+||+|||+.+..++..++...+.+|++.+.-.. ..++..|+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 46899999999999999999998888755678999887543 446777765
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.35 E-value=0.089 Score=56.33 Aligned_cols=49 Identities=16% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc----------CCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT----------GSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~----------~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.||||+|||+++..++..+. .+ +.++++++.-... +.+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 56899999999999999999887554 32 3567766554432 44545544
No 185
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.33 E-value=0.057 Score=62.18 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.-.||.||||||||+++.+++..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357999999999999988777554
No 186
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.33 E-value=0.04 Score=54.40 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|||||||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999987776543
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.31 E-value=0.047 Score=60.93 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
..+++|.||||+|||+++..++..+.+. +.++++.+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 4579999999999999999999888765 56777776543
No 188
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.27 E-value=0.056 Score=63.20 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.|+||+|||+.+..++.+++...+.+|++++.-.. ..++..|+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHH
Confidence 56899999999999999999998887654678999887554 457777764
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.26 E-value=0.071 Score=61.51 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..+|+||||||||+++..++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999887766443
No 190
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.23 E-value=0.052 Score=56.22 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-----CCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-----GSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-----~~rILV~ApS 557 (959)
..+++|.||||+|||+++..++...+..+ +.+++.+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 46899999999999999998887643321 3456655443
No 191
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.17 E-value=0.043 Score=60.35 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..||.||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999999999888777543
No 192
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.10 E-value=0.08 Score=59.22 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+++|.||||+|||+++..++..+.+. +.++++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 4679999999999999999999888765 5678877654
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.09 E-value=0.077 Score=58.89 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.|+||+|||+.+..++..++. .+.+|++.+.-- ...++..|+.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEm-s~~ql~~Rll 94 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEM-SAEQLALRAL 94 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSS-CHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCC-CHHHHHHHHH
Confidence 468999999999999999999988887 467899988743 3456666664
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.09 E-value=0.064 Score=59.41 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQ----RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 506 N~sQ~~AV~~al~----~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+...+.+..++. ....+|.||||||||+++..++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445555555553 23479999999999999988876653
No 195
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.07 E-value=0.041 Score=59.13 Aligned_cols=20 Identities=40% Similarity=0.823 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+|.||||||||+++..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999877764
No 196
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.06 E-value=0.065 Score=58.96 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
....+|.||||||||+.+..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456799999999999999888766
No 197
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.05 E-value=0.057 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=20.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+.+|.|||||||||++..+...+-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999888776553
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.01 E-value=0.053 Score=59.67 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHcc-----CCCEEEEcccHH-HHHHHHHHHHhcC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQT-----GSPVLVCAPSNI-AVDQLTEKIHRTG 572 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~-----~~rILV~ApSN~-AvD~L~erL~~~g 572 (959)
..+++|.||||+|||+++..++....... +.+++.++..+. -.+.+.+++.+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999887654321 457777765543 2445555554443
No 199
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.99 E-value=0.098 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=29.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
++..|.|++|+||||++..++..|... +.+|.++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEEeCC
Confidence 567899999999999999988777654 56777666543
No 200
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.96 E-value=0.082 Score=57.23 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+|.||||+||||++..++..
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998877654
No 201
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.96 E-value=0.061 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....+|.|||||||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999988877554
No 202
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.079 Score=57.24 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQR---PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 507 ~sQ~~AV~~al~~---~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+...+.+...+.. +..+|.||||||||+++..++..+.
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3455556665542 3489999999999999988887664
No 203
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.93 E-value=0.051 Score=54.00 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=24.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+|.|||||||||++..+...+-.. +..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEE
Confidence 46899999999999998887665432 3445444
No 204
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.88 E-value=0.1 Score=55.84 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCCHHHHHH-HHHHhcC-----CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 504 DLNRSQVYA-VKHAIQR-----PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 504 ~LN~sQ~~A-V~~al~~-----~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.|+.+... +..-+.. ...++.||||||||..+.+++..
T Consensus 83 g~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 578887654 4444432 25899999999999998877753
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.87 E-value=0.13 Score=53.41 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH-HccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV-KQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll-~~~~~rILV~Ap 556 (959)
..++.|.||+|+||||++..++...+ .. +..+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEc
Confidence 56899999999999999998886555 43 455555543
No 206
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.87 E-value=0.061 Score=61.76 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=29.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+|.|+||+||||++..++..+.+. +.+|++++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 67899999999999999999888876 56777764
No 207
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.84 E-value=0.05 Score=52.89 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATI 539 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~i 539 (959)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46789999999999987766
No 208
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.81 E-value=0.051 Score=53.46 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+.+|.|||||||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999877664
No 209
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.80 E-value=0.048 Score=57.38 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||||||+++..++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998877644
No 210
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.79 E-value=0.09 Score=57.89 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=29.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+.+|.||+|+|||||++.++..+... +++|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 367889999999999999999877765 67888774
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.72 E-value=0.07 Score=54.33 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
..+++|.||||+|||+++..++. . .+.++++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---L-SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---H-HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---H-cCCcEEEEEC
Confidence 45889999999999999988887 2 3567776654
No 212
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.70 E-value=0.12 Score=59.11 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 505 LNRSQVYAVKHAIQ--RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 505 LN~sQ~~AV~~al~--~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+...+..++..++. .++.+|.||.|+||||++..++..+ .....+|++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEe
Confidence 55667777777654 4689999999999999999888654 2224456654
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.66 E-value=0.055 Score=62.48 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=20.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.-.|+.||||||||+++.+++..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 358999999999999998887664
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.64 E-value=0.13 Score=51.39 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=23.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV 553 (959)
+.+|.|||||||||++..+...+-.. +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEE
Confidence 46789999999999998887666443 445543
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.62 E-value=0.24 Score=53.98 Aligned_cols=56 Identities=34% Similarity=0.469 Sum_probs=37.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc-c--HHHHHHHHHHHHhcCCeEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP-S--NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap-S--N~AvD~L~erL~~~gl~vv 576 (959)
.+..|.||.|+||||++..++..+... +++|++.+. + ..|.+++...-.+.++.++
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEE
Confidence 367899999999999999988766544 678887753 2 3345665443223445543
No 216
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.61 E-value=0.073 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+..+|.|+|||||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999987776544
No 217
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.60 E-value=0.073 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988776544
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.53 E-value=0.063 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999988877554
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.50 E-value=0.1 Score=58.60 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN 558 (959)
..+++|.||||+|||+++..++..+.+. +.++++++.-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 4579999999999999999999888765 56888887654
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.44 E-value=0.18 Score=55.63 Aligned_cols=56 Identities=34% Similarity=0.478 Sum_probs=39.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc-cc--HHHHHHHHHHHHhcCCeEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA-PS--NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A-pS--N~AvD~L~erL~~~gl~vv 576 (959)
.+..|.||.|+||||++..++..+... +++|++.+ .+ ..|.+++...-.+.++.++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEE
Confidence 467899999999999999998766554 56777664 33 3466666555555566554
No 221
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.41 E-value=0.062 Score=62.85 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=22.4
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 516 AIQRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 516 al~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+......|+.||||||||+++..+...+
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3457788999999999999887776443
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.39 E-value=0.069 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+..|.|||||||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988766643
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.37 E-value=0.072 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|||||||||++..++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999998887655
No 224
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.35 E-value=0.11 Score=56.85 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 507 ~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+.+.+.. +..++.+|.||+|+|||+++..++..+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 456667777 766899999999999999998877553
No 225
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.25 E-value=0.3 Score=58.28 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.|++.|+..+.........+|.+|.|+|||++++..+...+. .++.+|+++|+|...+..+.+.+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 589999998876545678999999999999998876654443 3556899999999999888877653
No 226
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.25 E-value=0.32 Score=58.87 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHh---cCC--cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhc
Q psy3251 504 DLNRSQVYAVKHAI---QRP--LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRT 571 (959)
Q Consensus 504 ~LN~sQ~~AV~~al---~~~--l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~ 571 (959)
..|..|..|+.... ..+ ..++.|.+|+|||.+++.++..+ +.++||+|++...|.++.+-|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 46777888887644 233 46788999999999999887554 468999999999999999999876
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.22 E-value=0.1 Score=60.11 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.|+||+|||+.+..++.+++.. +.+||+.+.-. ..+++..|+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEm-s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEM-GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSS-CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCC-CHHHHHHHHH
Confidence 4689999999999999999999998876 67899887653 3445666654
No 228
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.20 E-value=0.11 Score=60.12 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+...+.+...+. .+..||.||||||||+++..++..+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 344555555553 456799999999999999888776653
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.19 E-value=0.082 Score=58.71 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcccHH-HHHHHHHHHHhcC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAPSNI-AVDQLTEKIHRTG 572 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~ApSN~-AvD~L~erL~~~g 572 (959)
..+++|.||||+|||+++..++...... .+.+++.++..+. ..+.+.+++.+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcC
Confidence 4578999999999999999888764331 2457777766553 3455655555444
No 230
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.18 E-value=0.095 Score=58.81 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.6
Q ss_pred CcEEE--EcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLI--QGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LI--qGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+..+| .||||||||+++..++..+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46788 999999999999888866644
No 231
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.13 E-value=0.081 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|+|||||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999987766543
No 232
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.13 E-value=0.086 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.|||||||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999987777543
No 233
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.06 E-value=0.083 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|||||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999987776543
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.03 E-value=0.14 Score=50.94 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=26.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.+|.|+||+||||++..++..+-.. +.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 467899999999999998888766543 5566554
No 235
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.01 E-value=0.072 Score=62.20 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-.||.||||||||+++.++...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999988777543
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.00 E-value=0.069 Score=57.14 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||||||+++..++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 789999999999998877644
No 237
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.97 E-value=0.39 Score=54.14 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 504 DLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 504 ~LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
.|++.|+..+......+..+|..|-+.|||++++.++...+. .++.+|+++|+|...+..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 589999998876545688999999999999998887765433 3567899999999998888776653
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.97 E-value=0.089 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....+|.||||+||||++..++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578899999999999988887555
No 239
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.92 E-value=0.087 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|||||||||++..++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999987776543
No 240
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.89 E-value=0.16 Score=56.79 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV 553 (959)
..++.+|.||.|+||||++..++..+-...+.+|+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 356899999999999999998886665433445543
No 241
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.89 E-value=0.32 Score=54.33 Aligned_cols=55 Identities=35% Similarity=0.476 Sum_probs=37.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc-c--HHHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP-S--NIAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap-S--N~AvD~L~erL~~~gl~vv 576 (959)
+..|.||.|+||||++..++..+... +++|++.+. + ..|.+++...-.+.++.++
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v 216 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 216 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEE
Confidence 57899999999999999988766544 678887753 3 2355665443233455554
No 242
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.87 E-value=0.088 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.|||||||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988777544
No 243
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.85 E-value=0.098 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|+|||||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887776544
No 244
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.83 E-value=0.091 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|||||||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999987776544
No 245
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.79 E-value=0.089 Score=55.76 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999988777543
No 246
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.79 E-value=0.098 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.|||||||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999887776544
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.76 E-value=0.094 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999987776544
No 248
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.76 E-value=0.15 Score=54.12 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=26.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+.+|.|+||+||||++..+...|... +..++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 467899999999999998888766543 45555443
No 249
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.63 E-value=0.093 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|||||||||++..+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776543
No 250
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.54 E-value=0.082 Score=54.06 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.|||||||||++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988776643
No 251
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.50 E-value=0.11 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+..|+.||||||||+++..++..+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 35899999999999999988877753
No 252
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.47 E-value=0.11 Score=51.79 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=22.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVL 552 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rIL 552 (959)
+.+|.|+|||||||++..+...+-.. +..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEE
Confidence 46789999999999988877665432 33444
No 253
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.47 E-value=0.11 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...+|.|+|||||||++..+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999887776544
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.44 E-value=0.084 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
..+.+|.||||+||||++..++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999999877653
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.41 E-value=0.11 Score=52.21 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|+||+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999988777554
No 256
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.40 E-value=0.14 Score=53.77 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.++.|.+|+||||++..++..+. . +.+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEe
Confidence 46789999999999999999998887 4 77888775
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.32 E-value=0.12 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+..|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578899999999999988777554
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.26 E-value=0.11 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+.+|.|+|||||||++..+...+-
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999988876654
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.26 E-value=0.33 Score=55.53 Aligned_cols=57 Identities=30% Similarity=0.378 Sum_probs=39.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc---ccHHHHHHHHHHHHhcCCeEEEe
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA---PSNIAVDQLTEKIHRTGLKVVRV 578 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A---pSN~AvD~L~erL~~~gl~vvRl 578 (959)
+.+|.||+|+||||++..++..+... +.+|++.. +...|.+++...-...+++++..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~ 159 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccEEec
Confidence 56778999999999999999877654 67777764 22445555544333456666543
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.22 E-value=0.38 Score=55.92 Aligned_cols=55 Identities=29% Similarity=0.415 Sum_probs=36.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccH--HHHHHHHHHHHhcCCeEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSN--IAVDQLTEKIHRTGLKVV 576 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN--~AvD~L~erL~~~gl~vv 576 (959)
++.|.||.|+||||++..++..+.. .+++|++. +.+. .|.+++...-.+.++.++
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV 352 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEE
Confidence 6789999999999999988866544 46788886 3332 355665432223344443
No 261
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.21 E-value=0.19 Score=51.74 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-+..|..++..+-...++.|.||.|+||||++..+...
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678888888767789999999999999998777644
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.20 E-value=0.12 Score=52.41 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPV 551 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rI 551 (959)
..+.+|.|||||||||++..+...+-.. +-.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 3467899999999999998888666432 3444
No 263
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.17 E-value=0.16 Score=58.28 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.-.|+.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999987776544
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.15 E-value=0.12 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|||||||||.+..++..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999988777544
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.12 E-value=0.12 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.||||+||||++..+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999998776644
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.11 E-value=0.12 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||+||+|.+..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478899999999988777644
No 267
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.07 E-value=0.12 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.||||+||||.+..++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887776543
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.98 E-value=0.12 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.||||+||||.+..++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988777544
No 269
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.93 E-value=0.47 Score=51.46 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=38.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc---cHHHHHHHHHHHHhcCCeEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP---SNIAVDQLTEKIHRTGLKVVR 577 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap---SN~AvD~L~erL~~~gl~vvR 577 (959)
....|.|++|+||||++..++..+... +.+|++... .+.+..++..-....++.++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 356677999999999999999777654 678887753 244444454333344666554
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.92 E-value=0.079 Score=52.36 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.|+|||||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999998776543
No 271
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.91 E-value=0.13 Score=51.38 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...+|.|||||||||++..+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999998777654
No 272
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.90 E-value=0.23 Score=64.10 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=55.0
Q ss_pred cCCceEEeecccCCCccccEEEEEccccCCC----CCccCCC------------------------CcCceeecchhhcc
Q psy3251 851 IYQEIEVASVDAFQGREKDLIIMSCVRSNDH----QGIGFLN------------------------DPRRLNVALTRAKY 902 (959)
Q Consensus 851 ~~~~V~V~TVd~fQG~E~DiVIlS~Vrsn~~----~~iGFl~------------------------d~rRLNVAlTRAK~ 902 (959)
....|.|+|+|.++|.|+++|++..+..+.- ..-+|+. +++.+|||+|||+.
T Consensus 584 ~~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~ 663 (1166)
T 3u4q_B 584 ALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663 (1166)
T ss_dssp BSSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSS
T ss_pred CCCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccC
Confidence 3568999999999999999999998876532 1224432 22458999999999
Q ss_pred cEEEEEccc-----cccCCchHHHHHHHH
Q psy3251 903 GIIVIGNPK-----VLSKQPLWNNLLNFY 926 (959)
Q Consensus 903 ~LiIvGn~~-----~L~~~~~W~~ll~~~ 926 (959)
.|++..... .+..+++...+..++
T Consensus 664 ~L~lsy~~~~~~~~~~~pS~~l~el~~~~ 692 (1166)
T 3u4q_B 664 RLYVSYPIADAEGKTLLPSMIVKRLEELF 692 (1166)
T ss_dssp EEEEEEESSCSSSCCCCBCHHHHHHHHHS
T ss_pred eEEEEEeccCCCCCccCCCHHHHHHHHHc
Confidence 999986432 233466777766665
No 273
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.87 E-value=0.15 Score=55.46 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
....||.||||||||+++..+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 45689999999999998776664
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.86 E-value=0.24 Score=49.55 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
-++..|.||+|+||||++..++..+... +.++-++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEe
Confidence 3678999999999999999988776543 44554443
No 275
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.78 E-value=0.11 Score=57.03 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH-----------ccC----CCEEEEcccHH-HHHHHHHHHHhcC
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK-----------QTG----SPVLVCAPSNI-AVDQLTEKIHRTG 572 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~-----------~~~----~rILV~ApSN~-AvD~L~erL~~~g 572 (959)
..+++|.||||+|||+.+..++..... ..+ .+++.++..+. -.+.+.+++.+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 457999999999999999988876321 112 57887776553 1455555554443
No 276
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.72 E-value=0.18 Score=56.25 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=29.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
....|.|+||+|||+++..++..+... +.+|+++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEec
Confidence 367899999999999999999887654 678887754
No 277
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.67 E-value=0.14 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|||||||||.+..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999988777554
No 278
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.64 E-value=0.14 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999887776544
No 279
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.62 E-value=0.14 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.||||+||||.+..++..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776544
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.55 E-value=0.13 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=20.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...+.+|.||||+||||++..++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35678999999999999887776543
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.44 E-value=0.13 Score=51.33 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+.+|.||||+||||++..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999888763
No 282
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.43 E-value=0.13 Score=59.64 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-.+|.||||||||+++..++..+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999988777543
No 283
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.43 E-value=0.15 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...+|.|||||||||.+..++..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999988877654
No 284
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.40 E-value=0.12 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+|.|||||||||++..++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988776643
No 285
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.35 E-value=0.1 Score=52.61 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=28.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+.+|.||+|||||+.+..++.. +.+++.+|.....-+++.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHH
Confidence 3689999999999987766532 45777777655445677777654
No 286
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.27 E-value=0.11 Score=62.54 Aligned_cols=53 Identities=79% Similarity=1.258 Sum_probs=48.4
Q ss_pred ccCCCccccccccchhhhhhhhhhhhhhhcccccceeeeeecccccceeeEee
Q psy3251 328 KTDGDGYQYQNIFGPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFS 380 (959)
Q Consensus 328 ~~~~~~~~Y~~~f~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~ 380 (959)
.+++++.+|+++|.|||.+|+++++..++++...+++++|+.+++++.+.+|.
T Consensus 4 ~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (624)
T 2gk6_A 4 SRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT 56 (624)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEECTTSCEEEEEE
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeeecCCCceEEEEE
Confidence 45678999999999999999999998899988899999999999999988886
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.26 E-value=0.12 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.|||||||||.+..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988776643
No 288
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.24 E-value=0.23 Score=55.15 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.++.|-+|+||||+++.++..+.+. +.|||++.--
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D 63 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTD 63 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 3467889999999999999999999886 7899888643
No 289
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.18 E-value=0.2 Score=54.57 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 507 ~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+.+.+..++. .++.+|.||+|+|||+++..++..
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 345566666654 488999999999999998877644
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.17 E-value=0.17 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...|.||+|+||||++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999998777554
No 291
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.16 E-value=0.2 Score=56.26 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.+|.||+|+||||++..++..+-.....+|++.-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 5689999999999999999988665443246676543
No 292
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.12 E-value=0.22 Score=61.16 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+...+.+..++. .+..|+.||||||||+++..++..+.
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 445555555553 45689999999999999888776664
No 293
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.07 E-value=0.15 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.|||||||||.+..++..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56889999999999887777554
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.07 E-value=0.16 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+|.|||||||||.+..++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887777544
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.95 E-value=0.17 Score=51.10 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
++..++.+.. .-...+..|.||+|+||||++..+...+-
T Consensus 12 ~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 12 VEKVDRQRLL-DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCHHHHHHHH-TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555554432 12245778999999999999888876665
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.93 E-value=0.16 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
..+.+|.||+|+||||++..++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45788999999999999877664
No 297
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.93 E-value=0.42 Score=48.40 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=24.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+..|.||+|+||||++..+...+-.. +.+|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEe
Confidence 67899999999999988777555332 4455544
No 298
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.82 E-value=0.23 Score=50.73 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 505 LN~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
....++.... .-...+.+|.|+||+||||++..+...+-...+.++.++
T Consensus 12 ~~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 12 LTRSERTELR-NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CCHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCHHHhhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 3455555532 222457789999999999998887766641223344444
No 299
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.78 E-value=0.14 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.||||+||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999988777554
No 300
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.70 E-value=0.27 Score=54.05 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=32.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
.+.++.|-+|+||||+++.++..+.+. +.|||++..-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 477889999999999999999999886 7889888643
No 301
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.70 E-value=0.17 Score=59.73 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..++.||||||||+++..++..+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999888776554
No 302
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.69 E-value=0.27 Score=53.66 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
..+..|.||.|+||||++..++..+.. .+++|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEee
Confidence 347889999999999999988866543 4678887753
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.67 E-value=0.19 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+..|.||||+||||++..++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988777544
No 304
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.65 E-value=0.12 Score=54.65 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+.+|.||||+||||++..+...
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999988777644
No 305
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.61 E-value=0.2 Score=49.83 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
...+.+|.||+|+||||++..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3567899999999999998777643
No 306
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=89.60 E-value=0.26 Score=52.52 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCe
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLK 574 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~ 574 (959)
...+||.|+||||||+++...++.-+++ +.+++++++. ....+|.++....|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 4568999999999997778888777776 7899999984 4556667777766665
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.44 E-value=0.21 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
....|.|||||||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999987776443
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.36 E-value=0.19 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+..|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999998776643
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.36 E-value=0.2 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+..|.||+|+||||++..+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999988776543
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.30 E-value=0.22 Score=49.23 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSAT 538 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ 538 (959)
..+..|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35788999999999999984
No 311
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.07 E-value=0.3 Score=54.96 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHhcCCeEEEeec
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~~gl~vvRl~~ 580 (959)
.++.++|.||+|+|||+++..++.++.. .+.+|+++=+.+.... ++ ...|..+++++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~~~~-~~---~~~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPEREYKE-MC---RKLGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCCSHH-HH---HHTTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcCHHH-HH---HHcCCEEEEECC
Confidence 4788999999999999999999887765 4678999988765332 22 234667777764
No 312
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.98 E-value=0.62 Score=49.76 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=27.8
Q ss_pred CcEEEEcC-CCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGP-PGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGP-PGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
...+|.|+ ||.|||++++.++..+.+. +.|||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~-G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQA-GYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC-CCeEEEE
Confidence 35566665 9999999999999988875 7788886
No 313
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.96 E-value=0.3 Score=51.99 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
...+.+|.||.|+||||++..++..+-.....+|++.-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 35689999999999999998887654332245666543
No 314
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.95 E-value=0.17 Score=59.03 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+|.||||||||+++..++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999998777644
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.91 E-value=0.2 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+..|.|||||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999877753
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.91 E-value=0.13 Score=63.35 Aligned_cols=21 Identities=43% Similarity=0.830 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.|+.||||||||+++.+++..
T Consensus 241 ILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999988776643
No 317
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.85 E-value=0.59 Score=62.69 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~ 559 (959)
...++|.||||||||+++.+++....++ +.+++..++.+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccc
Confidence 4578999999999999999998877765 678888877653
No 318
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.83 E-value=0.31 Score=57.17 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 505 LNRSQVYAVKHAIQR-PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 505 LN~sQ~~AV~~al~~-~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
++..+..-+..++.. ...+|.||+|+||||++..++..+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445555666555544 468999999999999998776433
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.74 E-value=0.47 Score=48.92 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN 558 (959)
..+.+|.||+|+||||.+..+...|-.. +.++.++ -|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~~p~~ 45 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGG 45 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccccCCCC
Confidence 4577899999999999998888766543 4555444 3443
No 320
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.62 E-value=0.14 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
+.+|.||||+||||.+..++..+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468999999999999888776553
No 321
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.52 E-value=0.28 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
++..|.|||||||||++..+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999987776543
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.42 E-value=0.28 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
++.+|.||+|+||||++..++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999876654
No 323
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.41 E-value=0.38 Score=59.01 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345555555553 356799999999999999888876654
No 324
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.39 E-value=0.27 Score=48.57 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=20.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.+..|.|++|+||||++..+...+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999998877765543
No 325
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.21 E-value=0.34 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..|+.||||||||+++..++..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999988876653
No 326
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.17 E-value=0.26 Score=50.23 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+..|.||+|+||||++..+...+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999877765543
No 327
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.98 E-value=0.42 Score=56.88 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApS 557 (959)
..+.++.|.+|+|||++++.++..+.+. +.|||++..-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~-G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ-GKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC-CCcEEEEECC
Confidence 4578999999999999999999999886 7888887544
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.96 E-value=0.25 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..|.||.|+||||++..++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999987776443
No 329
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.79 E-value=0.57 Score=48.87 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc---cCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~---~~~rILV~ 554 (959)
..+.+|.||||+||||.+..+...|-.. .+.+|+++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4578899999999999998888776543 14555444
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.73 E-value=0.3 Score=50.90 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=24.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+.+|.||||+||||.+..++..+-. +..++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 46789999999999998877765532 4455443
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.58 E-value=0.36 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.....|.||||+||||++..++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6788999999999999987777544
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.58 E-value=0.25 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.|.||+|+||||++..++..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999988876544
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.53 E-value=0.27 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+..|.|||||||||++..+...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999988766643
No 334
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.46 E-value=0.45 Score=54.23 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVD 562 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD 562 (959)
+..++|.||+|||||+++..++.+++.. +.+++|.=|......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~-g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR-GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT-TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCCCchhH
Confidence 5778999999999999998888888875 678999988887654
No 335
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.31 E-value=0.46 Score=48.29 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.+..+|.|+||+|||+++..++..+... .++.++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i 63 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAM 63 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEE
Confidence 3568899999999999998888776332 455554
No 336
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.27 E-value=0.47 Score=52.71 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=29.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+...|.|+||+||||++-.++..+... +.+|.|.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEee
Confidence 467899999999999999988766554 678887774
No 337
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.26 E-value=0.2 Score=61.76 Aligned_cols=21 Identities=43% Similarity=0.773 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.|+.||||||||.++.+++..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHT
T ss_pred EEEecCCCCCchHHHHHHHHH
Confidence 689999999999887776643
No 338
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.26 E-value=0.58 Score=58.32 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.4
Q ss_pred HHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 508 SQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 508 sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
.....+..++. .+..++.||||||||+++..++..+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34444444443 345789999999999999888877765
No 339
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.25 E-value=0.57 Score=54.98 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIH 569 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~ 569 (959)
..+++|.||||+|||+++..++..+... +.+++...+.+.. ..+..++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~-~~l~~~~~ 329 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR-AQLLRNAY 329 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH-HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH-HHHHHHHH
Confidence 4688999999999999998888766543 5677777665432 35555543
No 340
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.25 E-value=0.51 Score=52.19 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
..+..|.||||+||||++..++..+.. .+.+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEE
Confidence 356889999999999999888865544 3677887764
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.13 E-value=0.76 Score=48.20 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCC-EEE-EcccH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP-VLV-CAPSN 558 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~r-ILV-~ApSN 558 (959)
...+.+|.||||+||||.+..+...|-.. +.+ +.+ --|+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~ 67 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGG 67 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCC
Confidence 35678899999999999998888777654 444 333 34443
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.12 E-value=0.33 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.++.+|.||.|+|||+++-++...|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999888876553
No 343
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.07 E-value=0.42 Score=52.85 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
..+.++.|-+|+||||+++.++..+.+. +.|||++.-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~-g~~vllid~ 52 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV-RRSVLLLST 52 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTS-SSCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhC-CCcEEEEEC
Confidence 4578899999999999999999888865 778888754
No 344
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.05 E-value=0.58 Score=52.06 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~Ap 556 (959)
..+.++.|-+|+||||+++.++..+.. ..+.+||++.-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 468899999999999999999988884 45788888864
No 345
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.01 E-value=0.48 Score=52.11 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.++.|-+|.|||++++.++..+.+. +.|||++.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 5678899999999999999999988875 78888874
No 346
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.97 E-value=0.22 Score=59.49 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
..|+.||||||||+++..++
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 68999999999999876655
No 347
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.93 E-value=0.36 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
....+|.|||||||||++..++..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999998877753
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.89 E-value=0.29 Score=49.31 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
...|.|||||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998877664
No 349
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.77 E-value=0.62 Score=47.54 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.+..+-+|+|||++++.++..|.+. +.|||++=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~-G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA-GYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEc
Confidence 44556679999999999999988876 78999864
No 350
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.61 E-value=0.36 Score=57.69 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=24.8
Q ss_pred HHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 510 VYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 510 ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+..++. ....+|.||||||||+++..++..+
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 344444443 5688999999999999987777543
No 351
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.57 E-value=0.74 Score=48.56 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=29.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
-+.++.+-.|+|||++++.++..|.+. +.+||++
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~-G~~Vlli 53 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQ-GKKVGIL 53 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 456777889999999999999998876 7789886
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.54 E-value=0.31 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.6
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.+..|.||||+||||++..+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999877665
No 353
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.51 E-value=0.32 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+.+|.|||||||||++..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998877664
No 354
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=86.48 E-value=0.61 Score=50.59 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=27.9
Q ss_pred CcEEEEcC-CCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGP-PGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGP-PGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
...+|.|+ ||.|||++++.++..|.+. +.|||++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC-CCcEEEE
Confidence 45566665 9999999999999988875 7788887
No 355
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.46 E-value=0.37 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|+.||||||||+++..++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47999999999999988777554
No 356
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.45 E-value=0.92 Score=46.76 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSNIAV 561 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN~Av 561 (959)
..+.+|.|++|+||||.+..+...|-..+-..+.++ -|+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~ 46 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL 46 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH
Confidence 356789999999999999888877765532244433 4454433
No 357
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.41 E-value=0.39 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
-+..|.||||+||||++..+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999887776544
No 358
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.40 E-value=0.37 Score=49.82 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=26.5
Q ss_pred EEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 524 IQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 524 IqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
|.|-+|+||||+++.++..|.+. +.|||++
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~-g~~Vlli 34 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASD-YDKIYAV 34 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTT-CSCEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 48999999999999999888876 6888887
No 359
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.29 E-value=1 Score=48.24 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=27.2
Q ss_pred CcEEEE--cCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQ--GPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIq--GPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
-+.+.. +-+|+||||+++.++..|.+. +.|||++
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~-G~rVlli 71 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKL-NLKVLMI 71 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhC-CCeEEEE
Confidence 344444 599999999999999888875 7889885
No 360
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.24 E-value=0.64 Score=51.77 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEEccc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVCAPS 557 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ApS 557 (959)
..+.++.|-+|.|||++++.++..|.. ..++|||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 457888999999999999999999983 457898887543
No 361
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.17 E-value=0.37 Score=54.70 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-----cCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-----TGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-----~~~rILV~Ap 556 (959)
..+++|.||||+|||+++..++...+.. .+.+++.+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 4689999999999999998776554431 1345665544
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.15 E-value=0.45 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..++.|.||.|+||||++..+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999877654
No 363
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.14 E-value=0.67 Score=48.61 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=29.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.++.+-+|+|||++++.++..|.+. +.+||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQL-GHDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 56778899999999999999998876 77888874
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.94 E-value=0.49 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
....|.||+|+||||++..++..+-
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3568999999999999988886665
No 365
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.85 E-value=0.54 Score=48.56 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=28.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.+..+-+|+|||++++.++..|.+..+.|||++=
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 45667789999999999999888876478888873
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.81 E-value=0.46 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-+..|.|++||||||++..+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999998777643
No 367
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.80 E-value=0.4 Score=59.76 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..+|.||||||||+++..+...+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 579999999999998887776554
No 368
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.74 E-value=0.64 Score=51.39 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=27.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
....|.|+||+||||++..++..+... +.+|.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 467789999999999999888776654 66777665
No 369
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.54 E-value=0.4 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++.+|.||-|+|||+++-++...|
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987776544
No 370
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.36 E-value=0.58 Score=46.86 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
.+..+-.|+|||++++.++..|.+. +.+||++-
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD 37 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRS-GYNIAVVD 37 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4455789999999999999998875 77888874
No 371
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.35 E-value=0.46 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=18.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+..|.||+|+||||++..+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999998776643
No 372
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.33 E-value=0.31 Score=60.23 Aligned_cols=108 Identities=46% Similarity=0.617 Sum_probs=71.5
Q ss_pred CCCccccccccCChHHHHHhh----hhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCcccccccc
Q psy3251 265 DEDPHQVLLRYEDGYQYQNIF----GPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIF 340 (959)
Q Consensus 265 ~~~~~~~~~~y~~~~~y~~~f----~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Y~~~f 340 (959)
|...-+-+.+.++..++.+.. .-+-+||... +.+...+.+++.-- ...-.+-.++..+.++.+|+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~~~------~~~~~~~~v~~~y~~~~~Y~~~~ 192 (800)
T 2wjy_A 121 DRCFLSWLVKIPSEQEQLRARQITAQQINKLEELW--KENPSATLEDLEKP------GVDEEPQHVLLRYEDAYQYQNIF 192 (800)
T ss_dssp SSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHH--TTCTTCCTTC--------------CCCCCCSCCSCHHHHHHHH
T ss_pred cccccHhhcCCCCHHHHhhhcCCCHHHHHHHHHHh--ccCcCcchhhhhhc------cccccccccccccCCHHHHHHHH
Confidence 444555567777777765533 3345566531 11222344443211 01112345566788899999999
Q ss_pred chhhhhhhhhhhhhhhcccccceeeeeecccccceeeEee
Q psy3251 341 GPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFS 380 (959)
Q Consensus 341 ~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~ 380 (959)
.||+.+|++++...++++...+++++|+++++++.+.+|.
T Consensus 193 ~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 232 (800)
T 2wjy_A 193 GPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT 232 (800)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEEC
T ss_pred HHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEEE
Confidence 9999999999988899988899999999999999888774
No 373
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.29 E-value=0.38 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.+.+|.||+|||||+++..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999988777754
No 374
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.28 E-value=0.67 Score=48.34 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+..+-.|+|||++++.++..|.+. +.+||++
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~Vlli 37 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVI 37 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCcEEEE
Confidence 45667889999999999999999875 7788886
No 375
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.24 E-value=0.69 Score=47.58 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=28.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.+..+-+|+|||++++.++..|.+. +.|||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD 38 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDR-GRKVLAVD 38 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 45567789999999999999998876 67888874
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.97 E-value=0.76 Score=50.49 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=23.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHc--cCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQ--TGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~--~~~rILV~Ap 556 (959)
+..|.||+|+||||++..+. .++.. ...+|.++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeEEEEee
Confidence 67899999999999986665 44432 2345555543
No 377
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.88 E-value=0.76 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=27.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
...|.|-.|+||||+++.++..|.+. +.+||++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~-G~~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEE
Confidence 34445999999999999999999886 7788887
No 378
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.81 E-value=0.55 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
...+.+|.||+|+||||++..++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356889999999999998877664
No 379
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.76 E-value=0.43 Score=47.74 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+..|.|||||||||++..+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999998876653
No 380
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.71 E-value=0.49 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.++.+|.||.|+|||+++-++.+.|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999988776665
No 381
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=84.62 E-value=0.8 Score=48.96 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=26.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.|.|-+|+||||+++.++..|.+. +.|||++
T Consensus 6 avs~KGGvGKTT~a~nLA~~La~~-G~rVlli 36 (289)
T 2afh_E 6 AIYGKGGIGKSTTTQNLVAALAEM-GKKVMIV 36 (289)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence 347899999999999999999876 7788876
No 382
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.46 E-value=0.72 Score=48.56 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 523 LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.|.|-.|+||||+++.++..|.+. +.|||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~-G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHC-CCcEEEE
Confidence 347899999999999999888865 7788885
No 383
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.35 E-value=0.48 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
....+|.||+|+|||+++.+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999877763
No 384
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.31 E-value=0.41 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
..+..|.||+|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999987766
No 385
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=84.28 E-value=0.85 Score=51.32 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhc--------C---CcEEEEcCCCChHHHHHHHHHHHHHH-----ccCCCEEEEc
Q psy3251 505 LNRSQVYAVKHAIQ--------R---PLSLIQGPPGTGKTVTSATIVYQLVK-----QTGSPVLVCA 555 (959)
Q Consensus 505 LN~sQ~~AV~~al~--------~---~l~LIqGPPGTGKT~Tia~ii~~Ll~-----~~~~rILV~A 555 (959)
++.+|...+...+. . -+.++.|-.|+||||+++.++..|.. ..+.|||++=
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 46778877776642 1 14566789999999999999999886 3478888873
No 386
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.26 E-value=0.58 Score=61.95 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQ 563 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~ 563 (959)
..+++|.||||+|||+.+..++....+. +.++++.+.-...-..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~ 426 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI 426 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHH
Confidence 4689999999999999999999888775 6688888766544433
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.23 E-value=0.49 Score=48.24 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
+..|.|++||||||++..+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999877665
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.89 E-value=0.43 Score=59.03 Aligned_cols=109 Identities=33% Similarity=0.510 Sum_probs=67.3
Q ss_pred CCCccccccccCChHHHHHhh----hhHHHhhhHHHHHHhhhccccceEEEEeccCCceeEEEEEccccCCCcccccccc
Q psy3251 265 DEDPHQVLLRYEDGYQYQNIF----GPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSLAKTDGDGYQYQNIF 340 (959)
Q Consensus 265 ~~~~~~~~~~y~~~~~y~~~f----~~lv~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~Y~~~f 340 (959)
|...-+-+.+.++..+|.+.. .-+.++|...- .....+.+++.- ....-.+-.++..+.++.+|+++|
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~--~~~~~~l~d~~~------~~~~~~~~~v~~~y~~~~~Y~~~~ 194 (802)
T 2xzl_A 123 DRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWR--SNKDATINDIDA------PEEQEAIPPLLLRYQDAYEYQRSY 194 (802)
T ss_dssp SSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHT--TCCCCCC------------------CCCCSSCSSHHHHHHHH
T ss_pred ccccchhhccCCCHHHhhhhcCCCHHHHHHHHHHHh--hCcCCchhhhhc------ccccccccccccccCCHHHHHHHH
Confidence 444555555666666654322 23556655321 113333443321 111223456677888999999999
Q ss_pred chhhhhhhhhhhhhhhcccccceeeeeecccccceeeEeee
Q psy3251 341 GPLVKLEADYDKRLKESQTQENVTVRWDVGLNKKSIAYFSL 381 (959)
Q Consensus 341 ~pLi~lea~~~~~~kes~~~~nvtvr~~~~~~~k~~~~f~~ 381 (959)
.||+++|++++...++++...+++++|+.+.+++.+..|.+
T Consensus 195 ~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (802)
T 2xzl_A 195 GPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTL 235 (802)
T ss_dssp HHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC-
T ss_pred HHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEe
Confidence 99999999999888999888999999999998888887775
No 389
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=83.40 E-value=0.88 Score=53.77 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ-----RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 507 ~sQ~~AV~~al~-----~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
+...+.+...+. .++++|+||+|.|||+++..++..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 345556666663 457899999999999999887653
No 390
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.26 E-value=0.66 Score=50.59 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
...+.|.||+|+||||++..++..+ .++|+...+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~ 159 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFAN 159 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGG
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEec
Confidence 4688999999999999988877655 456754433
No 391
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.22 E-value=0.58 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.-|.||||+||||.+..++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 3478999999999988776544
No 392
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.19 E-value=0.94 Score=46.17 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=27.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+++..+-.|+|||++++.++..|.+. + +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~-g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQ-G-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTT-S-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhc-C-CEEEE
Confidence 45668899999999999999888876 5 88885
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.15 E-value=0.52 Score=50.58 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
+..|.|||||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987776
No 394
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=83.11 E-value=0.68 Score=52.01 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
+.++.|..|+|||++++.++..+... +.+||++..
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~-g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQ-GKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCeEEEeC
Confidence 56889999999999999999988876 678777754
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.02 E-value=0.53 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..++.|.||||+|||+++..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999998887654
No 396
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.98 E-value=0.95 Score=59.94 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIA 560 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~A 560 (959)
..+++|.||||+|||+++..++..+... +.++++.+.-...
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchH
Confidence 3579999999999999999999888765 5688888765544
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.78 E-value=0.59 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.||+|+|||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 467899999999999988877554
No 398
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.75 E-value=0.87 Score=46.35 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE--cccHHHHHHHHHHHHhcCCeEEEee
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC--APSNIAVDQLTEKIHRTGLKVVRVC 579 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~--ApSN~AvD~L~erL~~~gl~vvRl~ 579 (959)
+.|.+.++..+. .+..+|.|.||+|||+++..++..+... .++.++ .+. ..+|. .++...+.+++.+.
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~-~~~d~--~~~~~~~~~~~~~~ 95 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVI-AKFDA--ERMEKHGAKVVPLN 95 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETT-THHHH--HHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCC-CCccH--HHHHhcCCcEEEec
Confidence 344444444332 3456788999999999999888776432 444433 332 23443 33444455655543
No 399
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.74 E-value=0.39 Score=59.45 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...++.||||||||+++..++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999887777554
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.73 E-value=0.65 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+..|.||+|+||||++..++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999998777643
No 401
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.60 E-value=0.5 Score=51.76 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.++.+|.||+|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578899999999999988877543
No 402
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.47 E-value=0.74 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.-|.||.|+||||++..+...+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999987766444
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.27 E-value=0.47 Score=58.75 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
...+|.||||||||+++..++.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3579999999999988776653
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.27 E-value=0.48 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
..+.+|.||||+||||++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999998877653
No 405
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.11 E-value=0.87 Score=47.19 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.....|.||||+||||++..+...|
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999887766433
No 406
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.01 E-value=0.76 Score=47.24 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV 553 (959)
..++.|.||.|+||||++..++..+ + +.|.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~---p-G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF---P-NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS---T-TTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC---C-CcEEE
Confidence 4688999999999999988777533 2 45655
No 407
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=81.93 E-value=1.9 Score=48.60 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHccCC-C--EEEEcccHHHHHHHHHH
Q psy3251 507 RSQVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQTGS-P--VLVCAPSNIAVDQLTEK 567 (959)
Q Consensus 507 ~sQ~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~-r--ILV~ApSN~AvD~L~er 567 (959)
.--.+||...+. ..-.+|.||||+|||+++..++..+.+..+. . ++.+.....-|..+.+.
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~ 225 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 225 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTT
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHH
Confidence 445567766553 4568999999999999999888777654322 2 23345555566655443
No 408
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.76 E-value=0.8 Score=46.45 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=20.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 517 IQRPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 517 l~~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
-...++.|.||.|+||||++..++..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568899999999999998877643
No 409
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=81.73 E-value=0.8 Score=49.54 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+..|.||+|+||||++..+...+-
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999877765554
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.62 E-value=0.8 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+|.||||+|||+++..++..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999987777554
No 411
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.52 E-value=1.1 Score=50.19 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.+..|-+|+|||++++.++..|.+. +.|||++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~-g~rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANM-GKKVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 45667799999999999999999886 77888875
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.47 E-value=0.81 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
.+..|.||||||||+++..+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998876654
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.31 E-value=0.66 Score=50.72 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcc
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP 556 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~Ap 556 (959)
++++|.||-|+||||++..+.... .+.+|.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEe
Confidence 578999999999999987766432 3456666655
No 414
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=81.20 E-value=0.88 Score=47.77 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+..+-+|+|||++++.++..|.+. +.|||++
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~-g~~Vlli 41 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARL-GKRVLLV 41 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC-CCCEEEE
Confidence 34445788999999999999999876 7899887
No 415
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=81.17 E-value=1.3 Score=49.88 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHHHc
Q psy3251 509 QVYAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQLVKQ 546 (959)
Q Consensus 509 Q~~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~Ll~~ 546 (959)
-.+||..... ..-.+|.||||||||+++..++.++.+.
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3456665543 3457999999999999998888877654
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.10 E-value=0.66 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
++.+|.||+|+|||+++..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46789999999999998887754
No 417
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.00 E-value=1.5 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHH-HHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV-YQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii-~~Ll~~~~~rILV~A 555 (959)
..+++|.||+|+||||++..++ .-+..-....|.+..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4689999999999999998864 445543334555554
No 418
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=80.93 E-value=1.4 Score=48.08 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
..+.-|.|=-|.|||||++.++..|.+. ++|||++=
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~-GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 3577788999999999999999999986 78898873
No 419
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.88 E-value=0.87 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+..|.||.|+||||++..+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999998776643
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.82 E-value=0.51 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
++.+|.||+|||||+++..++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999998887743
No 421
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=80.69 E-value=1.3 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=26.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+..+-||.|||++++.++..|.+. +.|||++
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLI 127 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQT-NKRVLLI 127 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEE
Confidence 34455569999999999999888865 7788887
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.41 E-value=0.67 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.+..|.||+|+||||++..+...+-
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999887775553
No 423
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.41 E-value=0.91 Score=46.94 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+.+|.||+|+||||.+..+...|
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999998887665
No 424
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.32 E-value=0.91 Score=47.78 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=31.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE--cccHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC--APSNIAVDQL 564 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~--ApSN~AvD~L 564 (959)
+.+..+-.|+||||+++.++..|. . +.|||++ -+.+.+...+
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~-g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-K-NNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-T-TSCEEEEEECTTCHHHHHT
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-C-CCCEEEEECCCCCCHHHHh
Confidence 455678899999999999999888 5 7888887 3344444443
No 425
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=80.22 E-value=0.95 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..|.||+|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 467899999999999987766444
No 426
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=80.21 E-value=0.83 Score=50.90 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=28.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+++..+-+|+||||+++.++..|.+. +.|||++
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVLlI 36 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQ-GKRVLYV 36 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhC-CCcEEEE
Confidence 34566889999999999999998874 7899988
No 427
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.87 E-value=1.2 Score=59.69 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIA 560 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~A 560 (959)
..+++|.||||+|||+++..++..+.+. +.++++.+.-...
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCH
Confidence 4689999999999999999999888764 5678877655433
No 428
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=79.64 E-value=1.2 Score=47.54 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+..+-.|+|||++++.++..|.+. +.+||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~-G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYG-GAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-CCcEEEE
Confidence 45556789999999999999998876 7788875
No 429
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.58 E-value=0.88 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
++.+|.||+|+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999988877654
No 430
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.50 E-value=0.8 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
+.+|.|++|+||||.+..+...|
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999887776554
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=79.46 E-value=0.98 Score=49.09 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=23.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH-ccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVK-QTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~-~~~~rILV~ 554 (959)
+..|.||+|+||||++..+...+-. -..+.|.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 6779999999999998766644321 224567664
No 432
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=79.29 E-value=3.4 Score=37.91 Aligned_cols=59 Identities=25% Similarity=0.522 Sum_probs=45.2
Q ss_pred ccccCccCCCCCCceeecCccCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCC
Q psy3251 99 PHACKYCGIHDPAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGV 167 (959)
Q Consensus 99 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~ 167 (959)
...|.-|+... .+-.|.+|++-+| ||+ ..+|+..|-..++|.-+.- |+....=||.|+.
T Consensus 24 ~~~C~~C~~~~--~~W~CL~CG~vgC-gr~--~~~HA~~H~~~t~H~~~~~-----l~~~~vwCy~cd~ 82 (109)
T 3c5k_A 24 TQPCGDCGTIQ--ENWVCLSCYQVYC-GRY--INGHMLQHHGNSGHPLVLS-----YIDLSAWCYYCQA 82 (109)
T ss_dssp TCCCTTTCCCS--SEEEETTTCCEEE-CTT--TTCHHHHHHHHHCCCEEEE-----TTTCCEEETTTTE
T ss_pred CCcCccccCCC--CeeeeeecCcccc-CCC--cChHHHHHhcccCCCEEEE-----CCCCCEEECCCCC
Confidence 47899999876 5677999999999 444 3699999999998875443 2333588999875
No 433
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=79.23 E-value=2 Score=44.61 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=28.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE-E-cccHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV-C-APSNIA 560 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV-~-ApSN~A 560 (959)
.+.+|.|++|+||||.+..+...|-...+.++.+ + -|....
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~ 64 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTL 64 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCCh
Confidence 4678899999999999988887776512455555 3 454433
No 434
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=78.75 E-value=1.1 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.++.|+||+||||++..++..|
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999998888665
No 435
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=78.31 E-value=4.4 Score=36.34 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=45.0
Q ss_pred ccccCccCCCCCCceeecCc--cCceeecCCCCCCcchhhHHHHHcCCCeeeecCCCCCCcceeEeeccCC
Q psy3251 99 PHACKYCGIHDPAYVIMCNI--CKKWFCNGRGHTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYTCGV 167 (959)
Q Consensus 99 ~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hlv~~~~~~~~lh~~~~~~~~~~ec~~c~~ 167 (959)
...|.-|+...+ .+-.|.+ |+.-+| ||+ ..+|+..|-..++|.=+.= |+...+=||.|+.
T Consensus 25 ~~~C~~C~~~~~-~lw~CL~~~Cg~vgC-gr~--~~~Ha~~H~~~t~H~~~~~-----l~~~~vwCy~cdd 86 (97)
T 2uzg_A 25 LGTCQDCKVQGP-NLWACLENRCSYVGC-GES--QVDHSTIHSQETKHYLTVN-----LTTLRVWCYACSK 86 (97)
T ss_dssp TTCCSSSCCCCS-SCEEECCTTCCCEEC-CTT--TTCHHHHHHHHTTCCEEEE-----TTTTEEEETTTTE
T ss_pred CCcCcCcCCCCC-CceeeecccCCCccc-CCC--cChHHHHHhhhcCCcEEEE-----CCCCCEEECCCCc
Confidence 368999995543 5789999 999999 442 4599999999988765432 2333689999974
No 436
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.73 E-value=2.9 Score=42.32 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=25.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+..|-|+.|+||||.+..+...|-.. +.+++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEE
Confidence 35688999999999998888777665 5566555
No 437
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=77.69 E-value=1.9 Score=51.51 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHH---hcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEE
Q psy3251 505 LNRSQVYAVKHA---IQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553 (959)
Q Consensus 505 LN~sQ~~AV~~a---l~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV 553 (959)
.+.+++.+...- ....+.+|.|+|||||||++..+...|... +.+++.
T Consensus 35 v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~-G~~~v~ 85 (630)
T 1x6v_B 35 VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYT 85 (630)
T ss_dssp CCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEE
Confidence 566776654321 112357899999999999998888777543 334433
No 438
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=77.63 E-value=1.2 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
...+..|.||+|||||++...++..|
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35678899999999999987777554
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=77.05 E-value=1.3 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
.-.+|.|++|+|||+++.+++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999887764
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.01 E-value=0.99 Score=44.81 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVK 545 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~ 545 (959)
....|.||.|+||||++..++..+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45779999999999998887765543
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=76.86 E-value=1.8 Score=49.90 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCE--EEEcccHHHHHHHHHHHHh
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPV--LVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rI--LV~ApSN~AvD~L~erL~~ 570 (959)
...-.+|.||||+|||+++..++.......+.-. ..+.--..-+.++.+.+..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 3567899999999999999999877765422222 2234445555566665544
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=76.82 E-value=1.3 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.+|.||.|+|||+++-++...+.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999988876665
No 443
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.72 E-value=1.3 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
..+.+|.||.|+||||++..++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999887743
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.43 E-value=1.4 Score=49.24 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.++++|.||-|+|||+++-++.+.+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999877776665
No 445
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.24 E-value=1.6 Score=60.53 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 506 NRSQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 506 N~sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
+-.....+..++. ....|+.||||||||.++..++.
T Consensus 1253 T~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1253 TIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHh
No 446
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.13 E-value=2 Score=46.52 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHHHHHHHH
Q psy3251 510 VYAVKHAIQRPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 510 ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii 540 (959)
.+.+...+...+..|.||+|+||||++..+.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 4556666777889999999999999988776
No 447
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.09 E-value=1.4 Score=43.04 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..+..|.||-|+||||++..++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3478899999999999998888666
No 448
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=76.09 E-value=0.9 Score=51.27 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhc---------C--CcEEEEcCCCChHHHHHHHHHHHHHH-----ccCCCEEEE
Q psy3251 505 LNRSQVYAVKHAIQ---------R--PLSLIQGPPGTGKTVTSATIVYQLVK-----QTGSPVLVC 554 (959)
Q Consensus 505 LN~sQ~~AV~~al~---------~--~l~LIqGPPGTGKT~Tia~ii~~Ll~-----~~~~rILV~ 554 (959)
++.+|...+..... . -+.++.|-.|+||||+++.++..|.. ..+.|||++
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 57788888875521 1 24667789999999999999988873 347788887
No 449
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.67 E-value=1.2 Score=49.16 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
....+|.||.|+||||++..++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999998777643
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=75.35 E-value=2.1 Score=47.70 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.7
Q ss_pred HHHHHhcCCcEEEEcCCCChHHHHHHHHH
Q psy3251 512 AVKHAIQRPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 512 AV~~al~~~l~LIqGPPGTGKT~Tia~ii 540 (959)
.+...+....+.|.||+|+||||++-.++
T Consensus 208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 208 PLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 34444567789999999999999886665
No 451
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=74.83 E-value=2.5 Score=50.21 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
..+.++.|.+|+|||++++.++..+.+. +.++|++
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~-g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHC-CCcEEEE
Confidence 4567889999999999999999999876 6788886
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=74.82 E-value=1.6 Score=41.20 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|++|+|||+++..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999877665
No 453
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.63 E-value=0.62 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+.+|.|++|+||||.+..++..|
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999987666443
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=74.34 E-value=1.6 Score=43.42 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.||+|+|||+++..++
T Consensus 8 v~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 5789999999999887665
No 455
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=74.28 E-value=2.3 Score=47.21 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=24.9
Q ss_pred HHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHH
Q psy3251 511 YAVKHAIQ---RPLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 511 ~AV~~al~---~~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
.||...+. .....|.||+|+||||++..++..
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56766653 468899999999999997777654
No 456
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.83 E-value=1.7 Score=43.81 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.-.+|.|+||+|||+++..++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999887665
No 457
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=73.74 E-value=2.3 Score=45.91 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHHHHHHHH
Q psy3251 510 VYAVKHAIQRPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 510 ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii 540 (959)
.+.+...+...+..|.||+|+||||++..+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 3444555667889999999999999886665
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=73.73 E-value=3.8 Score=41.70 Aligned_cols=37 Identities=27% Similarity=0.541 Sum_probs=26.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE-cccHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC-APSNI 559 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~-ApSN~ 559 (959)
+..|-|+.|+||||.+..+...|. . +.+++.+ =|+..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~-~~~v~~~~eP~~t 41 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMTREPGGV 41 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEEESSTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-C-CCCEEEeeCCCCC
Confidence 567899999999999888777663 2 5566655 34433
No 459
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=73.28 E-value=8 Score=36.56 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=47.1
Q ss_pred ccccCccCCCCCCceeecCccCceeecCC---CCCCcchhhHHHHHcCCCeee-ecCCCCCCcceeEeeccCC
Q psy3251 99 PHACKYCGIHDPAYVIMCNICKKWFCNGR---GHTSGSHIINHLVRAKHKEVT-LHKDGPLGETVLECYTCGV 167 (959)
Q Consensus 99 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~---~~~~~shi~~hlv~~~~~~~~-lh~~~~~~~~~~ec~~c~~ 167 (959)
...|.-|+... .+-.|.+|+.--|--. |....+|...|...++|.=+. |.-=.| |+..+=||.|..
T Consensus 34 ~~~C~~C~~~~--~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~-~~~~vwcY~cd~ 103 (129)
T 2g45_A 34 GWKCSKCDMRE--NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP-DGADVYSYDEDD 103 (129)
T ss_dssp BCCCSSSSCCS--SEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBT-TBCCEEETTTTE
T ss_pred CCcCccccCcC--ceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCC-CCCeEEECCCCC
Confidence 46799999874 7999999999999332 122469999999999986543 322222 235688999853
No 460
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=73.15 E-value=9.2 Score=46.45 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh----cCCeEEEeec
Q psy3251 507 RSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR----TGLKVVRVCA 580 (959)
Q Consensus 507 ~sQ~~AV~~al~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~----~gl~vvRl~~ 580 (959)
+-|.-...... .+- +.+=..|+|||.+++..++ |....+..|.|+|+|..-|.+-++-+.. +|+++.-+.+
T Consensus 78 dvQligg~~L~-~G~-iaEM~TGEGKTLva~lp~~-lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 78 DVQVMGGIALH-EGK-VAEMKTGEGKTLAATMPIY-LNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HHHHHHHHHHH-TTC-EEECCTTSCHHHHTHHHHH-HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHh-CCC-hhhccCCCCccHHHHHHHH-HHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 45655444332 222 6677899999998655443 3333578899999999888776666543 5888765554
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=73.13 E-value=1.7 Score=43.17 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
..+|.||+|+|||+++..++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 36799999999999987665
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=72.91 E-value=1.9 Score=40.90 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+++..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999887765
No 463
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=72.71 E-value=1.9 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
..++.|.||+||||++..++..+-
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999988876654
No 464
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.67 E-value=1.9 Score=41.42 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.9
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy3251 521 LSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii 540 (959)
..+|.|+||+|||+++..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46789999999999887765
No 465
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=72.57 E-value=2.9 Score=48.78 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHc-cCC--CEEEEcccH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQ-TGS--PVLVCAPSN 558 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~-~~~--rILV~ApSN 558 (959)
.+..+|.|++|+|||+.+..++..|+.. .+. ++.++=|.+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 5889999999999999999999887754 222 455555543
No 466
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=72.41 E-value=2 Score=40.57 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876655
No 467
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=71.93 E-value=1.9 Score=40.51 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|++|+|||+++..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876655
No 468
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.66 E-value=2.1 Score=42.10 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.-.+|.|++|+|||+++..++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999887665
No 469
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=71.08 E-value=2.2 Score=41.02 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999877664
No 470
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=70.91 E-value=2.2 Score=44.70 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=23.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
.++.|.||.|+||||++..+.- ++.-..+.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEEC
Confidence 5778999999999999877653 322122455553
No 471
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.88 E-value=2.3 Score=40.38 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999876664
No 472
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=70.79 E-value=3.2 Score=37.32 Aligned_cols=24 Identities=38% Similarity=1.075 Sum_probs=19.7
Q ss_pred cccCccCCC-CCCceeecCccCceee
Q psy3251 100 HACKYCGIH-DPAYVIMCNICKKWFC 124 (959)
Q Consensus 100 ~~c~yc~~~-~~~~~~~c~~~~~wfc 124 (959)
..| +||.. +..-+|.|..|++||=
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H 53 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQH 53 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEE
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCc
Confidence 568 79875 4678999999999994
No 473
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=70.68 E-value=2.3 Score=40.98 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|++|+|||+.+..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876665
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.62 E-value=2.1 Score=44.08 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
..++.|.||.|+||||++..+.- ++.-..+.|.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~ 69 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYN 69 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEEC
Confidence 46889999999999999876653 322223456654
No 475
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=70.62 E-value=1.9 Score=44.56 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
..++.|.||.|+||||++..+. -++.-..+.|.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEC
Confidence 4678899999999999876655 3332223456653
No 476
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=70.59 E-value=2.4 Score=48.14 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=25.1
Q ss_pred HHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHH
Q psy3251 508 SQVYAVKHAIQ-RPLSLIQGPPGTGKTVTSATIVY 541 (959)
Q Consensus 508 sQ~~AV~~al~-~~l~LIqGPPGTGKT~Tia~ii~ 541 (959)
..++++..+.. .+...|.||+|+||||++..+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 44555555554 35778999999999999877663
No 477
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=70.59 E-value=2.2 Score=40.61 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999877665
No 478
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.49 E-value=2.1 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii 540 (959)
..++.|.||.|+||||.+..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999987665
No 479
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=70.37 E-value=2.4 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876655
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=70.07 E-value=2.7 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHccCCCEE
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVL 552 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rIL 552 (959)
.+..|.|++|+||||++..++..+-...+.+|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 467899999999998877766555332223454
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=69.96 E-value=3.7 Score=48.64 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=24.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
+.+|.|+||+||||++..+...|-..++.++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 4679999999999988877766654321444444
No 482
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=69.92 E-value=2.4 Score=40.25 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999886665
No 483
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=69.85 E-value=6.1 Score=41.40 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=32.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEcccHHHHHHHHHHHHh
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHR 570 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ApSN~AvD~L~erL~~ 570 (959)
+..|.|+|||||||++..+..+ .+ +-+.++.......+.+.+..
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~----~g--~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN----YS--AVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH----SC--EEECCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh----cC--CeEEecChHHHHHHHHHccc
Confidence 3568999999999988665432 12 44688888888888877653
No 484
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=69.68 E-value=2.6 Score=43.70 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~L 543 (959)
.+..|.|++|||||+++..++..|
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999987777554
No 485
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=69.56 E-value=2.5 Score=40.15 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999887664
No 486
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=69.55 E-value=2.7 Score=48.43 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHccC-CCEEEEc
Q psy3251 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTG-SPVLVCA 555 (959)
Q Consensus 518 ~~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~-~rILV~A 555 (959)
..+.+.|.||.|+||||++..++..+....+ ..|++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 3578999999999999998877755544434 3377764
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=69.53 E-value=2.5 Score=40.46 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5789999999999876654
No 488
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.45 E-value=2.3 Score=44.37 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~ 554 (959)
..++.|.||.|+||||++..+. -++.-..+.|.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYID 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEEC
Confidence 5688999999999999876555 3332223456664
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=69.42 E-value=4 Score=48.08 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=25.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHccCCCEEEEc
Q psy3251 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555 (959)
Q Consensus 521 l~LIqGPPGTGKT~Tia~ii~~Ll~~~~~rILV~A 555 (959)
+.++.|+||+||||++..+...|-.. +.++.++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~-G~~~~~ld 407 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQAR-GRKVTLLD 407 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhc-CCeEEEEC
Confidence 46789999999999888877666544 45555554
No 490
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=69.07 E-value=2.6 Score=40.12 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.8
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999876654
No 491
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=68.91 E-value=2.4 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=18.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIVYQ 542 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii~~ 542 (959)
....|.||+|+||||++..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999988776643
No 492
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=68.86 E-value=2.7 Score=39.87 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876655
No 493
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=68.75 E-value=2.7 Score=44.11 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH-HHccCCCEEEE
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQL-VKQTGSPVLVC 554 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~L-l~~~~~rILV~ 554 (959)
..++.|.||.|+||||++..+.-.+ ..-..+.|.+.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 4688999999999999987766431 11123456654
No 494
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=68.72 E-value=2.2 Score=41.81 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999887665
No 495
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.58 E-value=2.7 Score=40.01 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999886654
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=68.53 E-value=2.7 Score=39.73 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii 540 (959)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876665
No 497
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.52 E-value=2.5 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy3251 519 RPLSLIQGPPGTGKTVTSATIVYQLV 544 (959)
Q Consensus 519 ~~l~LIqGPPGTGKT~Tia~ii~~Ll 544 (959)
.++.+|.||-|+|||+++-++-+.+.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999888876555
No 498
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=68.24 E-value=2.5 Score=41.50 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.-.+|.|+||+|||+++..++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999987776
No 499
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=67.94 E-value=3.2 Score=39.87 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy3251 520 PLSLIQGPPGTGKTVTSATIV 540 (959)
Q Consensus 520 ~l~LIqGPPGTGKT~Tia~ii 540 (959)
.-.+|.|+||+|||+++..++
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999887664
No 500
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=67.86 E-value=2.8 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q psy3251 522 SLIQGPPGTGKTVTSATIVYQL 543 (959)
Q Consensus 522 ~LIqGPPGTGKT~Tia~ii~~L 543 (959)
..|.||.|+||||++..+...+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999998877544
Done!