RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3251
(959 letters)
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 93.8 bits (232), Expect = 4e-21
Identities = 51/280 (18%), Positives = 90/280 (32%), Gaps = 63/280 (22%)
Query: 454 FDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAV 513
+L L + ++++V+ + VDE L L K F D Q A
Sbjct: 101 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS---DEINWQKVAA 157
Query: 514 KHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQ---TGSPVLVCAPSNIAVDQLTEKIHR 570
A+ R +S+I G PGTGKT T A ++ L++ + + AP+ A +LTE
Sbjct: 158 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES--- 214
Query: 571 TGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYR 630
G + ++ + P LH + + L+
Sbjct: 215 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRH-------------------- 254
Query: 631 MLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPEC--MVPVILGA 688
+ +++DE+ P ++ +
Sbjct: 255 --------------------------HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 288
Query: 689 KQLILVGDHCQLGPVVMCK------KAARAGLSQSLFERL 722
++I +GD QL V A AG + +L
Sbjct: 289 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 328
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 47.0 bits (110), Expect = 5e-06
Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 47/291 (16%)
Query: 505 LNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP---VLVCAPSNIAV 561
LN Q AV+ + P L+ G+GKT + L++ G + +N A
Sbjct: 2 LNPGQQQAVEF-VTGPC-LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 59
Query: 562 DQLTEKIHRT-------GLKVVRVCA-------KSREAIDSPVSFLALHNQIRNMEMNSE 607
++ E++ +T GL + + A+ +F + + +
Sbjct: 60 REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL 119
Query: 608 LKKLLQLKEETGELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSI 667
+ L++ + + + ++ K ++ +K ++
Sbjct: 120 TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNV 179
Query: 668 LI--DESMQATEPECMVPVILGAKQ----LILVGDHCQLGPV-----------------V 704
L D + T + Q +LV ++ V
Sbjct: 180 LDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVV 239
Query: 705 MCKKAARAGLSQSLFERLVVL-----GIRPFRLEVQYRMHPELSKFPSNFF 750
+ + + LV+L ++ +LE YR + K +
Sbjct: 240 GDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILI 290
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 43.7 bits (102), Expect = 1e-05
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 6/118 (5%)
Query: 522 SLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAK 581
+ + P G+GK+ T V G VLV PS A + + V
Sbjct: 11 AHLHAPTGSGKS----TKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKA-HGVDPNIRT 65
Query: 582 SREAIDSPVSFLALHNQIRNMEMNSELKKL-LQLKEETGELSSADEKRYRMLKKNAEK 638
I + + + + +E + + AE
Sbjct: 66 GVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAET 123
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 44.6 bits (104), Expect = 3e-05
Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 16/253 (6%)
Query: 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP---VLVCAPSN 558
L LN+ Q AV+ + PL LI G+GKT + L+ + +L +N
Sbjct: 9 LAHLNKEQQEAVRT-TEGPL-LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66
Query: 559 IAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEET 618
A ++ E++ I + S +R + + + + T
Sbjct: 67 KAAREMRERVQSLLGGAAEDV-----WISTFHSM--CVRILRRDIDRIGINRNFSILDPT 119
Query: 619 GELSSADEKRYRMLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEP 678
+LS + I P + + +
Sbjct: 120 DQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQE 179
Query: 679 ECMVPVILGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRM 738
+ + D + + Q F+ + + + QY +
Sbjct: 180 YQQRLL---RNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTN-RAQYTL 235
Query: 739 HPELSKFPSNFFY 751
+L++ N
Sbjct: 236 VKKLAERFQNICA 248
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 42.2 bits (98), Expect = 3e-04
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 502 LPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSP---VLVCAPSN 558
L LN+ Q AV+ + PL LI G+GKT + L+ + +L +N
Sbjct: 9 LAHLNKEQQEAVRT-TEGPL-LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66
Query: 559 IAVDQLTEKIHR 570
A ++ E++
Sbjct: 67 KAAREMRERVQS 78
>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 246
Score = 39.4 bits (91), Expect = 0.001
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 818 GMKPEQIGVITP-YEGQRAFLVQHMQYQGSLPAKIYQEIEVA---SVDAFQGREKDLIIM 873
G+ IG+ +G R + S+ E E +V QG E D +
Sbjct: 132 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 191
Query: 874 SCVRSNDHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKVLSK 915
+ + A+TRA+ + + + ++LS
Sbjct: 192 ILPSQR-----TPVVTRELVYTAVTRARRRLSLYADERILSA 228
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 39.5 bits (91), Expect = 0.001
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVR 577
++ L+++ PG GKT + + + G L+ AP+ + ++ E + ++
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQT 67
Query: 578 VC 579
Sbjct: 68 PA 69
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 35.9 bits (82), Expect = 0.015
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP--SNIAVDQLTEKIHRTGLKVVRVCA 580
++ G GTGKT + + V + S VL A A++QL KI + +
Sbjct: 15 MVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQL--KIWGERVGATVISH 72
Query: 581 KSREAIDSPVSFLALHNQIRNMEM 604
+ H RN ++
Sbjct: 73 SEGADPAAVAFDAVAHALARNKDV 96
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.8 bits (78), Expect = 0.032
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 509 QVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568
Q + LI P G GKT+ + I + + G VL+ AP+ V Q E
Sbjct: 14 QEVIYAKCKETNC-LIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESF 72
Query: 569 HR 570
R
Sbjct: 73 RR 74
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.5 bits (75), Expect = 0.039
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKV---VRVC 579
++ PG GKT + + LV AP+ + + ++ E H +K
Sbjct: 11 VLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSA 70
Query: 580 AKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYRMLKKNAEKS 639
S + + L ++ + ++ E D A ++
Sbjct: 71 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVII-----MDEAHFLDPASIAARGWAAHRA 125
Query: 640 LLDNADVICCT 650
+ + I T
Sbjct: 126 RANESATILMT 136
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 34.3 bits (78), Expect = 0.043
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP--SNIAVDQLTEKIHRTGLKVVRVC 579
+ G G+GKT T+A + + P+LV A A +QL + G+ V+ V
Sbjct: 14 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.8 bits (76), Expect = 0.057
Identities = 9/83 (10%), Positives = 15/83 (18%), Gaps = 1/83 (1%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLV-CAPSNIAVDQLTEKIHRTGLKVVRVCAK 581
+ GPPG GKT L ++ + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 582 SREAIDSPVSFLALHNQIRNMEM 604
E +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSF 87
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 33.5 bits (76), Expect = 0.080
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN--IAVDQLTEKIHRTGLKVVRVC 579
L+ G G GKT T A + + + QL+E R + V++
Sbjct: 10 LVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 68
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 34.1 bits (77), Expect = 0.087
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVV 576
L+ G GTGK+V + Y + + G +++ P+ + K R ++
Sbjct: 54 LVNGATGTGKSVLLRELAYTGLLR-GDRMVIVDPNG----DMLSKFGRDKDIIL 102
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 33.2 bits (75), Expect = 0.094
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554
++ G GTGK T+ + Y K+ LV
Sbjct: 16 MLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG 47
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 32.7 bits (74), Expect = 0.15
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555
L+ G G GKT T + Q +Q S +L
Sbjct: 13 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 45
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.5 bits (70), Expect = 0.31
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPS 557
++ G PG G T +S + L K+ + +V S
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 39
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.1 bits (69), Expect = 0.38
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559
++ G PG GK+ A + L Q + ++ +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 31.3 bits (69), Expect = 0.44
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 510 VYAVKHAIQRPLS-----LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559
+ + ++ P + G PGTGKTVT + +T + +
Sbjct: 29 DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 31.5 bits (70), Expect = 0.46
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 500 PNLPDLN--RSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554
P++P L+ + +H + ++ G G GKT +A I +L G V +
Sbjct: 3 PDIPSLSALVDDIARNEHGL----IMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLT 54
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 31.2 bits (70), Expect = 0.53
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 511 YAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559
V + ++ L +GP +GKT T+ L++ G L
Sbjct: 146 CMVYNIPKKRYWLFKGPIDSGKT----TLAAALLELCGGKALNVNLPLD 190
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.8 bits (69), Expect = 0.58
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTG--SPVLVCAPS--NIAVDQLTEKIHRTGLKVVRV 578
LI G + S + + K S VL P NI +D +
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELY 78
Query: 579 CAK 581
K
Sbjct: 79 TRK 81
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 28.4 bits (63), Expect = 0.75
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 101 ACKYCGI-HDPAYVIMCNICKKWFC 124
+ C + P ++MCN C+ F
Sbjct: 6 SATICRVCQKPGDLVMCNQCEFCFH 30
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 30.0 bits (67), Expect = 0.79
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 535 TSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLA 594
+ Q+ +T PVL + E K EA + + ++
Sbjct: 85 AVINGMMQVQLETEVPVLSVV---LTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVS 141
Query: 595 LHNQI 599
++I
Sbjct: 142 ERSRI 146
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 30.8 bits (69), Expect = 0.80
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 80 LQFEEEEDDGNEFFNKELPPHACKYCGIHD 109
LQF D N + Y G HD
Sbjct: 391 LQFAFGSDAENPHLPHNHEQNQVVYTGTHD 420
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.84
Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 11/224 (4%)
Query: 517 IQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAP------SNIAVDQLTEKIHR 570
++ P++L+ G TGK+ +I+ + + P + + I+ ++ +
Sbjct: 27 LRAPITLVLGLRRTGKS----SIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 82
Query: 571 TGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSADEKRYR 630
K+V+ +A+ + + + N+I+ + L E + S +
Sbjct: 83 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVL 142
Query: 631 MLKKNAEKSLLDNADVICCTCVGAGDPRLLKIKFHSILIDESMQATEPECMVPVILGAKQ 690
+ K N + + + E
Sbjct: 143 DEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFST 202
Query: 691 LILVGDHCQLGPVVMCKKAARAGLSQSLFERLV-VLGIRPFRLE 733
+ L + + + A + +E + +G P L
Sbjct: 203 VELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLT 246
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 30.5 bits (68), Expect = 0.87
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 524 IQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSN 558
GP G+GK+ TS I L+++ G + S
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASI 66
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.0 bits (66), Expect = 1.1
Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580
+L+ G GTGKT+ S +Y + + P + + + G + ++
Sbjct: 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE-TPQDIIKNARSFGWDLAKLVD 86
Query: 581 KSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEE 617
+ + I + ++++ ++++ ++
Sbjct: 87 EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK 123
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 29.9 bits (66), Expect = 1.3
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 509 QVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKI 568
Q K +++ P G GKT + L + V P+++ V Q E I
Sbjct: 48 QKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK-RCYVIFPTSLLVIQAAETI 106
Query: 569 ----HRTGLKVVRVC 579
+ G+ +
Sbjct: 107 RKYAEKAGVGTENLI 121
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 1.3
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCA 580
+ L G GTGKT+ + V +L + QL + G+ +
Sbjct: 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGMDFEEMER 85
Query: 581 KSREAI-DSPVSFLALHNQIRNMEM 604
++ I + L + ++ ++
Sbjct: 86 QNLLKIVCAYPESAGLEDHLQIIKS 110
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 30.1 bits (66), Expect = 1.4
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 11/144 (7%)
Query: 516 AIQRPLS---LIQGPPGTGKTVTSATIVYQLVKQTGSPVLV---CAPSNIAVDQLTEK-- 567
++ PL LI+ GTGKT T A + +L+ G + V TE
Sbjct: 10 PLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAAT 69
Query: 568 ---IHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKEETGELSSA 624
R + + + L +I + ++ L + + + + +
Sbjct: 70 AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTI 129
Query: 625 DEKRYRMLKKNAEKSLLDNADVIC 648
RML NA +S + +
Sbjct: 130 HGFCQRMLNLNAFESGMLFEQQLI 153
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 117
Score = 28.4 bits (63), Expect = 1.8
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 24/112 (21%)
Query: 496 HFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCA 555
+ LPDL AV+ + PL ++ + ++ PV+
Sbjct: 4 NLGFQKLPDL------AVQAQQKAPLDALR----------------KFLETFDGPVVFSV 41
Query: 556 PSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSE 607
S + L E + R + R+ + +L +
Sbjct: 42 ESEGRREALGELLARIKIAPQRI--MRLDEASDRGRYLMIGAAEHGFVDTVR 91
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 29.1 bits (64), Expect = 2.6
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKS 582
L+ G GTGK+ + L + V C S+ V+ + + V+R
Sbjct: 32 LVFGDRGTGKSTAVRALAALLPEIE--AVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89
Query: 583 RE 584
+
Sbjct: 90 VD 91
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.8 bits (64), Expect = 2.7
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 518 QRPLSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554
+ P+ + G G G + T ++ V +
Sbjct: 3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 39
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 26.5 bits (58), Expect = 3.1
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 86 EDDGNEFFNKELPPHACKYCGIHDPAYVIMCNICKKWFC 124
D + F C+ C D ++ C+ C +
Sbjct: 4 GSDHHMEF--------CRVCK--DGGELLCCDTCPSSYH 32
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 27.3 bits (60), Expect = 3.2
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 95 KELPPHA--CKYCGIHD--PAYVIMCNICKKWFCNGRGHTSGSHIINHLVRAKH 144
+ + P A C+ C ++ +C C C H H H
Sbjct: 12 RTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSP--HKHATRHFHATGH 63
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 83 EEEEDDGNEFFNKELPPHACKYCG-IHDPAYVIMCNICKKWFC 124
E E D N + C C H+ ++I C+ C++WF
Sbjct: 8 ECEVYDPNALY--------C-ICRQPHNNRFMICCDRCEEWFH 41
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 3.9
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553
++ G G+GKT L
Sbjct: 36 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDE 68
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.6 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLV 553
L+ G PG+GK+ TI L G P +
Sbjct: 8 LLSGHPGSGKS----TIAEALANLPGVPKVH 34
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 27.9 bits (61), Expect = 4.8
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 473 AYIYHRLLGH-NVDEVLFRCHLPKHFSAPNLPD---LNRSQVYAVKHAIQRPLSLIQGPP 528
A+ Y ++ + + + F + P L Q A++ + I P
Sbjct: 35 AFRYRDIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPT 94
Query: 529 GTGKTVTSATIVYQLVKQTGSPVLVCAPSNIAVDQLTEKIHRTGLKVVRVC 579
G+GKT + + +L +P L+ P+ +Q E++ G + V
Sbjct: 95 GSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEF 141
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 28.2 bits (61), Expect = 4.9
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 521 LSLIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNI 559
++ + G TGKT T+ I
Sbjct: 25 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI 63
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 5.4
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 514 KHAIQRPLS-LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVCAPSNIA-----VDQLTEK 567
K A++ P + L+ G PG+GKT ++ + ++T V+V D+L +
Sbjct: 26 KKAVESPTAFLLGGQPGSGKT----SLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKL 81
Query: 568 IHRTGLKVVRVCAKSREAIDSPVSFLALHNQIRNMEMNSELKKLLQLKE 616
+ +K V + +N + + +
Sbjct: 82 YEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 27.6 bits (60), Expect = 6.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 510 VYAVKHAIQRPLS--LIQGPPGTGKTVTSATIVYQ 542
V K++ + PL L++GPP +GKT +A I +
Sbjct: 29 VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 63
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.8 bits (60), Expect = 6.4
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 19/77 (24%)
Query: 486 EVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLS------------LIQGPPGTGKT 533
V ++P L + A+ L G G GKT
Sbjct: 7 RVFDENYIPP-----ELRVRR-GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKT 60
Query: 534 VTSATIVYQLVKQTGSP 550
T A + V + +
Sbjct: 61 -TLAKFTVKRVSEAAAK 76
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.3 bits (59), Expect = 6.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVL 552
I G +GK+ +V +L +
Sbjct: 11 AILGGESSGKS----VLVNKLAAVFNTTSA 36
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.3 bits (59), Expect = 7.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 523 LIQGPPGTGKTVTSATIVYQLVKQTGSPVLVC 554
+I GP G GK+ T +L Q + +
Sbjct: 6 IITGPAGVGKS----TTCKRLAAQLDNSAYIE 33
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 9.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 523 LIQGPPGTGKTVTSATIVYQL 543
++ GPPG GKT + + +L
Sbjct: 56 MLYGPPGIGKTTAAHLVAQEL 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,522,011
Number of extensions: 168080
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 50
Length of query: 959
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 865
Effective length of database: 1,116,976
Effective search space: 966184240
Effective search space used: 966184240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)