RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3252
(475 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 159 bits (404), Expect = 1e-45
Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 49/234 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG GIG+ A E AK + + + ++ L + + K
Sbjct: 36 ITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK-------------- 81
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ +D S + E+I S+ + G V +LVN AG+ L
Sbjct: 82 ----------VHTFVVDCS-NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDP 130
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
I+ ++N+ TKA + M + G IV AS A
Sbjct: 131 QIE---------------------KTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA 169
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT---ITLCLPPDTDTPGFEN 333
++ + L AY SSKFA GF + L E+ +T T P +T +N
Sbjct: 170 GHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN 223
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 157 bits (399), Expect = 2e-45
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 59/255 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SG+G+ + I +RG V+++ R ++L Q + + A
Sbjct: 8 VTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAV---------------- 51
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D++ +E++ A A++ G ++++CAG G + T +
Sbjct: 52 -----------IGIVADLA-HHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAE 99
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
R V++ NL TI + + V + +RG G + S A
Sbjct: 100 Q-------------------IR--RVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSA 137
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRET 342
A +G + Y +SK+ ++GF E+L E+K S L + P + ++N + P
Sbjct: 138 AQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDPS-- 195
Query: 343 SLISQTGGLYRPEVV 357
G PE
Sbjct: 196 -------GFMTPEDA 203
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 154 bits (392), Expect = 9e-44
Identities = 51/244 (20%), Positives = 87/244 (35%), Gaps = 48/244 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG+ +A AK GAHV + AR ++ L + +
Sbjct: 33 VTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAAS------------- 79
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
Y++ + D + A G + ML+ L +
Sbjct: 80 ----------AHYIAGTME-DMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIH 128
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
++ +++N + +T A + M ++ G IV+ +S A
Sbjct: 129 HVR---------------------KSMEVNFLSYVVLTVAALP-MLKQSNGSIVVVSSLA 166
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGL--TITLCLPPDTDTPGFENEEKSKPR 340
+ +AAY++SKFAL GF ++ E S + +ITLC+ DT
Sbjct: 167 GKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVH 226
Query: 341 ETSL 344
+
Sbjct: 227 MQAA 230
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 146 bits (371), Expect = 1e-40
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 47/262 (17%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+SGIG A E A+RGA + + D+ L QA ++ + +
Sbjct: 36 VTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVV--------- 86
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+ + + A G V ++ + AG+ + G L +M
Sbjct: 87 ---------------CDVR-HLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHD 130
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGC-IVITASQ 281
D WR W VID++L+G+IH +A + + ++G G I TAS
Sbjct: 131 D-------------------WR-W-VIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF 169
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRE 341
A + GL Y +K+ + G AE L EVK +G+ +++ P +T N E+ + +
Sbjct: 170 AGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGAD 229
Query: 342 TSLISQTGGLYRPEVVKQSGLT 363
+ + G + P + ++
Sbjct: 230 YGMSATPEGAFGPLPTQDESVS 251
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 146 bits (369), Expect = 3e-40
Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 54/275 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG++G+G + + +G V I + + +A ++ P+ +
Sbjct: 13 VTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVM---------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V LD++ E + A R GPV +L N AG+ L +EE +
Sbjct: 63 ------------GVQLDVA-SREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYD 109
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR------GRGCIV 276
D W W ++ +NL+G ++ V M +R G +V
Sbjct: 110 D-------------------WD-W-LLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVV 148
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEK 336
TAS AA L Y ++KFA++G +E+L+ + + + +++ P + + +++
Sbjct: 149 NTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDI 208
Query: 337 SKPRETSLISQTGGLYRPEVVKQSGLTITLCLPPD 371
+ V++ + PD
Sbjct: 209 RPDALKGEVKPV----DKTAVERLAGVHEFGMEPD 239
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 139 bits (352), Expect = 1e-38
Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 55/243 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSG+G +A G + R E KL +
Sbjct: 6 ITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNV---------------- 49
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRC-GPVYMLVNCAGMALCGTLEEMTM 221
Y + D++ ++ ++ +V+ AG G L+E
Sbjct: 50 -----------GYRARDLAS-----HQEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDP 93
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ I+ + I+ NL I++ + LV+ K + +V+ S
Sbjct: 94 EQIQTL---------------------IENNLSSAINVLRELVKRYKDQPVN-VVMIMST 131
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRE 341
AA + Y + K+A+KG E++ +E+K + I P T +E KS
Sbjct: 132 AAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTS 191
Query: 342 TSL 344
+ +
Sbjct: 192 SFM 194
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 138 bits (350), Expect = 3e-38
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 44/227 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S GIG +A A G V ++AR ++ L + +EI ++
Sbjct: 12 ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN---------------- 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
K ++ + LDI+ D + ++ + G V +LVN A M + G+L E
Sbjct: 56 -----KHVQEPIVLPLDIT-DCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPV-- 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ +R ++++N+ + K + E MK + G I AS+A
Sbjct: 108 -----DN-------------FR--KIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRA 147
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
A G Y S+KFAL G AE+LY E+ G+ +T P +T
Sbjct: 148 AKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD 194
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 135 bits (342), Expect = 4e-37
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 50/232 (21%)
Query: 98 NGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEY 157
G + +TG S GIG+ A +G V ++ARDEK+L E++ A
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGA------------ 52
Query: 158 EEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLE 217
+ D+ + + A+ + G + LVN AG+ + +
Sbjct: 53 ----------------LPLPGDVR-EEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVH 95
Query: 218 EMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVI 277
E+T+++ WR V+D NL G + V + +RG G IV
Sbjct: 96 ELTLEE-------------------WR--LVLDTNLTGAFLGIRHAVPALLRRGGGTIVN 134
Query: 278 TASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
S A G AAY +SKF L G A A ++++++ + + LP DT
Sbjct: 135 VGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTG 186
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 134 bits (339), Expect = 4e-37
Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 61/238 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + G+G A A +G + + R L + E+
Sbjct: 5 ITGATGGLGGAFA--RALKGHDLLLSGRRAGALAELAREVG------------------- 43
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D++ + ++ GP+ +LV+ G A ++ E
Sbjct: 44 ----------ARALPADLAD-----ELEAKALLEEAGPLDLLVHAVGKAGRASVREAG-- 86
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
L ++ +L +++ + + V +
Sbjct: 87 -----------------RDLVE--EMLAAHLLTAA----FVLKHARFQKGARAVFFGAYP 123
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPR 340
+ + G AAY ++K AL+ + EA E+ + G+ + L P T +
Sbjct: 124 RYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLGGPPKG 181
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 132 bits (334), Expect = 1e-35
Identities = 56/257 (21%), Positives = 97/257 (37%), Gaps = 52/257 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSGIG +A AK GAH+ +VAR +L +A +K+
Sbjct: 12 ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVR------------- 58
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ V++D++ E + + ++ G +LVN AG T+ E +
Sbjct: 59 ----------VLEVAVDVA-TPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADE 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W+ +L + + + + LV GM+ RG G I+ AS
Sbjct: 108 K-------------------WQF--YWELLVMAAVRLARGLVPGMRARGGGAIIHNASIC 146
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRET 342
A ++ Y +K AL F++ L EV + + + P TP + K ++
Sbjct: 147 AVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDN 206
Query: 343 SLISQTGGLYRPEVVKQ 359
G ++
Sbjct: 207 -------GGDWKGYLQS 216
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 130 bits (330), Expect = 2e-35
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 50/243 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S GIG+ +A A+ G + + AR +L + E+ +
Sbjct: 7 ITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE------------- 53
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ Y LD+S E++ + ++R G V ++V AG+ LEE++ +
Sbjct: 54 ----------VFYHHLDVS-KAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEE 102
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ + +I++NL G KA ++ +K+ G +V T+ +
Sbjct: 103 E-------------------FH--EMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVS 141
Query: 283 ANLGIY-GLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRE 341
A + Y S+K+A + +E + P DT ++ +
Sbjct: 142 AR--LIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFGGSKPGKPKEK 197
Query: 342 TSL 344
L
Sbjct: 198 GYL 200
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 132 bits (333), Expect = 5e-35
Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 42/272 (15%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSG G+ A A G V RD + E +
Sbjct: 10 ITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD--------- 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + LD+ ++ A+ + G + +L++ AG + G E T +
Sbjct: 61 ----------LRTLELDVQ-SQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPE 109
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ D+N+ T + +A + M+++ G ++ +S +
Sbjct: 110 QFA---------------------ELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSS 148
Query: 283 ANLGIY-GLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRE 341
+ G LA Y ++K A+ A E+ + G+ ++ +P + P +
Sbjct: 149 SAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDD 208
Query: 342 TSLISQTGGLYRPEVVKQSGLTITLCLPPDTD 373
+ ++ + ++ +PPD D
Sbjct: 209 HARQAEYEAGPNAGLGEEIKKAFAAIVPPDAD 240
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 127 bits (321), Expect = 1e-33
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 49/221 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SSG G+ +A A G V AR + L
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDR----------------- 52
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E +SLD++ D E I + R G V +LVN AG G EE T +
Sbjct: 53 ----------AEAISLDVT-DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTER 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+++ + +L+++G +T+AL+ M++RG G +V +S
Sbjct: 102 ELRDL---------------------FELHVFGPARLTRALLPQMRERGSGSVVNISSFG 140
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLP 323
L G +AY+++K AL+ +E L EV G+ + + P
Sbjct: 141 GQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEP 181
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 126 bits (318), Expect = 1e-33
Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 61/242 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIG+ GA V V+R + L E
Sbjct: 12 VTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI----------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E V +D+ D+E AL GPV +LVN A +AL E+T +
Sbjct: 55 -----------EPVCVDLG-DWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKE 98
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
+ ++NL I +++ + G+ RG G IV +SQ
Sbjct: 99 A-------------------FD--RSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ 137
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP----GFENEEK 336
+ + + Y S+K AL + + +E+ + + + P T + + K
Sbjct: 138 CSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVN-PTVVMTSMGQATWSDPHK 196
Query: 337 SK 338
+K
Sbjct: 197 AK 198
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 125 bits (317), Expect = 3e-33
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 52/230 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGSSGIG + GA V ARD ++L A+ +++ P +
Sbjct: 13 VTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGAR------------ 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D+ D +R+ + G +LVN AG T E T +
Sbjct: 61 ----------LFASVCDVL-DALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDE 109
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W + L + IH +A + ++ R IV S
Sbjct: 110 A-------------------WSE--ELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLL 148
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGF 331
A+ + A ++++ +K ++ E G+ + + G
Sbjct: 149 ASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGIL-------IGL 191
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 124 bits (315), Expect = 4e-33
Identities = 49/243 (20%), Positives = 83/243 (34%), Gaps = 63/243 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIG+ GA V V R L+ +E
Sbjct: 12 VTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI----------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E V +D+ A + A+ GPV +LVN A + + E+T +
Sbjct: 55 -----------EPVCVDLGD-----WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKE 98
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
+ +NL +++ + M RG G IV +S
Sbjct: 99 A-------------------FD--RSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM 137
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPP---DTD--TPGFENEE 335
A++ L Y+S+K A+ +A+ ME+ + + ++ P TD + E
Sbjct: 138 VAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVN--PTVVLTDMGKKVSADPE 195
Query: 336 KSK 338
++
Sbjct: 196 FAR 198
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 124 bits (315), Expect = 5e-33
Identities = 48/227 (21%), Positives = 79/227 (34%), Gaps = 45/227 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VT GSSG+G A+E A+ GA + + +R+ +KL A I +
Sbjct: 12 VTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQ------------ 59
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ V+ DI + +I + A D G +LV G G E+ ++
Sbjct: 60 ----------VDIVAGDIR-EPGDIDRLFEKARDL-GGADILVYSTGGPRPGRFMELGVE 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D W L + + + E M ++G G +V S
Sbjct: 108 D-------------------WDE--SYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVT 146
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
LA + + G L +E+ G+T+ LP T
Sbjct: 147 LLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTD 193
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 124 bits (314), Expect = 5e-33
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 53/234 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAH-------VTIVARDEKKLLQAQEEIKKACPNPKFIRFI 155
+TG GIG+ +A+E A+ H + + +R L + E +
Sbjct: 7 ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGAL------- 59
Query: 156 EYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGT 215
+ ++ DIS D ++R ++R G + LVN AG+ G
Sbjct: 60 -----------------TDTITADIS-DMADVRRLTTHIVERYGHIDCLVNNAGVGRFGA 101
Query: 216 LEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCI 275
L ++T +D + ++ NL GT +T+AL M+++ G I
Sbjct: 102 LSDLTEED--------FDY-------------TMNTNLKGTFFLTQALFALMERQHSGHI 140
Query: 276 VITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
S AA + Y SKF +G E + + ++ + IT P TP
Sbjct: 141 FFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTP 194
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 126 bits (318), Expect = 7e-33
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 48/230 (20%)
Query: 103 VTGGSSGIGKHVAIEAAK---RGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEE 159
+TG SSGIG H+A+ A + V RD K + E + P + ++
Sbjct: 7 ITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ--- 63
Query: 160 IKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEM 219
LD+ D +++ +A + + G V +LV AG+ L G LE +
Sbjct: 64 ------------------LDVR-DSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEAL 102
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+ +V+D+N+ GT+ M +A + MK+RG G +++T
Sbjct: 103 GEDAVA---------------------SVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTG 141
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
S +G+ Y +SKFAL+G E+L + + G+ ++L T
Sbjct: 142 SVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 124 bits (314), Expect = 8e-33
Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 54/231 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + GIG +A A GA + + RD +L A+ + +
Sbjct: 25 ITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--------------- 69
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ V++D++ + + + A + G + +LVN AG++ + + Q
Sbjct: 70 --------TDVHTVAIDLA-EPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQ 120
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
+ + I +NL + A+ + M G G I+ AS
Sbjct: 121 L-------------------FDA--TIAVNLRAPALLASAVGKAMVAAGEGGAIITVASA 159
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGF 331
AA + AY +SK L + L E+ G+ ++C P
Sbjct: 160 AALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVC-------PTV 203
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 123 bits (311), Expect = 1e-32
Identities = 51/263 (19%), Positives = 91/263 (34%), Gaps = 49/263 (18%)
Query: 94 LAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIR 153
L P N T++V G IG +A + A G V R+ +KL EI+ A
Sbjct: 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG------- 55
Query: 154 FIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC 213
+ SLD + + + + L A D P+ + + G +
Sbjct: 56 -------GRI----------VARSLDAR-NEDEVTAFLN-AADAHAPLEVTIFNVGANVN 96
Query: 214 GTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG 273
+ E T + +R V ++ + + M G+G
Sbjct: 97 FPILETTDRV-------------------FR--KVWEMACWAGFVSGRESARLMLAHGQG 135
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP-DTDTPGFE 332
I T + A+ G G AA+ S+KF L+ A+++ E+ + + + DT
Sbjct: 136 KIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVR 195
Query: 333 NEEKSKPRETSLISQTGGLYRPE 355
+ + +L + L P
Sbjct: 196 ERREQMFGKDALANP-DLLMPPA 217
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 123 bits (311), Expect = 3e-32
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 44/217 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG SGIGK VA GA V IV R+ KL A +E++ N IR+
Sbjct: 16 VTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP------ 69
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEEMTM 221
DI+ + + A+ G ++ +V+CAG + G + ++
Sbjct: 70 ---------------TDIT-NEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDS 113
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ WR +DLN+ GT+++ K M + G G V +S
Sbjct: 114 EA-------------------WRR--TVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSI 152
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
AA+ AY +K A+ + E+ S + +
Sbjct: 153 AASNTHRWFGAYGVTKSAVDHLMQLAADELGASWVRV 189
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 119 bits (301), Expect = 3e-31
Identities = 45/261 (17%), Positives = 82/261 (31%), Gaps = 59/261 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
GIG + E KR ++ + A E+K P
Sbjct: 10 FVAALGGIGLDTSRELVKRNLKNFVILDRVEN-PTALAELKAINPKVN------------ 56
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
I + + D++ + L+ D+ V +L+N AG+ +
Sbjct: 57 ----------ITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI--------LDDH 98
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRG--RGCIVITA 279
I+ I +N G ++ T A+++ K++G G I
Sbjct: 99 QIE---------------------RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT-ITLCLPPDTDTPGFENEEKSK 338
S I+ + Y++SK A+ F +L +G+T ++ P T TP
Sbjct: 138 SVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSIN-PGITRTPLVHTFNSWL 196
Query: 339 PRETSLISQ--TGGLYRPEVV 357
E + + E
Sbjct: 197 DVEPRVAELLLSHPTQTSEQC 217
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 118 bits (299), Expect = 5e-31
Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 54/230 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + G+G + + ++ + R+ + L E
Sbjct: 10 VTGATGGMGIEIVKDLSRDHIVY-ALGRNPEHLAALAEIEG------------------- 49
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+E + DI + + V LV+ A +A T+E ++
Sbjct: 50 ----------VEPIESDIV-KEVLEEGGVD-KLKNLDHVDTLVHAAAVARDTTIEAGSVA 97
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ W +DLN+ +++ L+ ++ GC++ S A
Sbjct: 98 E-------------------WH--AHLDLNVIVPAELSRQLLPALRAA-SGCVIYINSGA 135
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFE 332
N G Y +SK AL+G A+A E +G+ ++ P T+TP +
Sbjct: 136 GNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQ 185
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 118 bits (299), Expect = 6e-31
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 47/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSGIG+ A A GA V I AR +KL +E+ A
Sbjct: 12 ITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAK-------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + LD++ D + + +A+ ++ G + +LVN AG+ L G +E+
Sbjct: 58 ----------VHVLELDVA-DRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTT 106
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D M ID NL G ++MT+A + + R +G +V +S A
Sbjct: 107 DWTRM---------------------IDTNLLGLMYMTRAALPHLL-RSKGTVVQMSSIA 144
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
+ + A Y ++KF + F+E L EV + G+ +
Sbjct: 145 GRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVV 181
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 118 bits (297), Expect = 2e-30
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 46/210 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S GIG+ +A E GA + + AR + ++ EI+ A
Sbjct: 9 ITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGT-------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
LD++ D ++ + Q A+D G + +LVN AG+ L + +
Sbjct: 55 ----------ALAQVLDVT-DRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVD 103
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ + M ID+N+ G + A++ M+ + G I+ S
Sbjct: 104 EWERM---------------------IDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIG 142
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVK 312
A + A Y ++KFA++ ++ L E
Sbjct: 143 ALSVVPTAAVYCATKFAVRAISDGLRQEST 172
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 117 bits (295), Expect = 2e-30
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 43/227 (18%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG+ A+ A+ GA V ++ R+E+KL Q I +
Sbjct: 17 VTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE----------------- 59
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
P++ + L EN + Q + +++ AG+ G + M+ Q
Sbjct: 60 TGRQPQWFI----LDLLTC-TSENCQQLAQRIAVNYPRLDGVLHNAGLL--GDVCPMSEQ 112
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ +V W V+ +N+ T +T+AL+ + + G +V T+S
Sbjct: 113 NPQV-----WQD-------------VMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSV 154
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
G AY +SKFA +G + L E Q L + P T T
Sbjct: 155 GRQGRANWGAYAASKFATEGMMQVLADEY-QQRLRVNCINPGGTRTA 200
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 117 bits (296), Expect = 2e-30
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 51/229 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG +A + GA V + ARD +KL + EI A +
Sbjct: 34 VTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--------------GE 79
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
A E + D+S + I + + G +LVN AG G L M
Sbjct: 80 A----------ESHACDLS-HSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKP 128
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ W +I +NL + +A M RG I+ +S
Sbjct: 129 AE-------------------WD--ALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSL 167
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP---DTD 327
A + AAYT+SK+ L G + E++Q + ++ + P T+
Sbjct: 168 AGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVS-LVAPGSVRTE 215
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 117 bits (296), Expect = 3e-30
Identities = 45/259 (17%), Positives = 87/259 (33%), Gaps = 52/259 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG IG A+ A+ G + ++ + + L +A+ +++ +
Sbjct: 12 VTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYV--------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA-LCGTLEEMTM 221
D++ E + + + G + L N AG +++
Sbjct: 63 ---------------CDVT-SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPS 106
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
D + V+ +N+ G H+ KA+ M + G IV TAS
Sbjct: 107 DD-------------------FA--RVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM 145
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPR 340
A G +AAY +SK A+ E +++ + + + P +
Sbjct: 146 AGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAIS-PGYMGPGFMWERQVELQA 204
Query: 341 ETSLISQTGGLYRPEVVKQ 359
+ + P+VV Q
Sbjct: 205 KVGSQYFSTD---PKVVAQ 220
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 117 bits (296), Expect = 3e-30
Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 50/221 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG VA ++G V AR + + E K A I
Sbjct: 37 VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLI---------- 86
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+S + E+I S + V + +N AG+A TL +
Sbjct: 87 ------------PYRCDLS-NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTS 133
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRG--RGCIVITAS 280
K M ++N+ T+ + MK+R G I+ S
Sbjct: 134 GWKDM---------------------FNVNVLALSICTREAYQSMKERNVDDGHIININS 172
Query: 281 QAANLGIY---GLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + Y+++K+A+ E L E++++ I
Sbjct: 173 MSG-HRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHI 212
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 117 bits (295), Expect = 3e-30
Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 50/232 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
++G +G +A A++GA + + AR ++L +++ +
Sbjct: 16 ISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVG--------- 66
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
DI+ D + + M G V +++N A + T
Sbjct: 67 ---------------TDIT-DDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTF 110
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ R I+L ++G + + + +++ G +V S
Sbjct: 111 EH-------------------MRD--AIELTVFGALRLIQGFTPALEESK-GAVVNVNSM 148
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFE 332
AY +K AL ++ L E+ + G+ + ++ P +
Sbjct: 149 VVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVL-PGYIWGGTLK 199
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 117 bits (295), Expect = 4e-30
Identities = 46/252 (18%), Positives = 88/252 (34%), Gaps = 53/252 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS GIG + E A GA V +R+EK+L + E ++ N +
Sbjct: 26 VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVC-------- 77
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDR-CGPVYMLVNCAGMALCGTLEEMTM 221
D+ +Q G + +LVN AG+ + ++ T
Sbjct: 78 ----------------DLL-SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTE 120
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D + ++ N H+++ +K G ++ +S
Sbjct: 121 KD-------------------YN--IIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI 159
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP---DTD--TPGFENEEK 336
A + ++ Y++SK A+ ++L E + + + + P T +
Sbjct: 160 AGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVN-SVAPGVILTPLVETAIKKNPH 218
Query: 337 SKPRETSLISQT 348
K + I +T
Sbjct: 219 QKEEIDNFIVKT 230
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 116 bits (293), Expect = 5e-30
Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 45/229 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIG A A GA V ++ R E L + ++IK A I +
Sbjct: 19 VTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN------ 72
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA-LCGTLEEMTM 221
L+ + + R G + L++ A + LE++
Sbjct: 73 ---------------LENA-TAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPD 116
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D + V+ +N+ T +T+AL+ +K+ I T+S
Sbjct: 117 ED-------------------FM--QVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSS 155
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVK-QSGLTITLCLPPDTDTP 329
G AY SKFA +G + L E++ + + P T T
Sbjct: 156 VGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG 204
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 116 bits (294), Expect = 6e-30
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 41/217 (18%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S+GIG+ AI A+ GA+VTI R ++L + ++ I K+ + K +
Sbjct: 11 ITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS-------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V D++ + + + + G + +LVN AG A+
Sbjct: 63 -------------VVADVT-TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTG-- 106
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+Q + ++ + LNL I MTK + + G IV +S
Sbjct: 107 ----TDQG---------IDIYHK--TLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIV 150
Query: 283 ANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A Y +K AL + + +++ + G+ +
Sbjct: 151 AGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRV 187
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 115 bits (291), Expect = 8e-30
Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 53/214 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV--ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEI 160
VTG S GIGK + + AR E L + +E+
Sbjct: 7 VTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRF-------------- 52
Query: 161 KKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEM 219
YV DI+ + ++ + A+ G + LV AG + + E+
Sbjct: 53 -------------FYVVGDIT-EDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEI 98
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+ W+ + D+N + + + + +K+ G +V +
Sbjct: 99 DVNA-------------------WKK--LYDINFFSIVSLVGIALPELKKTN-GNVVFVS 136
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQ 313
S A N+ AY SSK AL FA L E +Q
Sbjct: 137 SDACNMYFSSWGAYGSSKAALNHFAMTLANEERQ 170
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 116 bits (292), Expect = 8e-30
Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 50/216 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS GIG +A K GA V I D ++
Sbjct: 17 VTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGG---------------- 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +D++ ++ +A+Q A+D G +L AG++ ++T +
Sbjct: 61 -----------FAVEVDVT-KRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDE 108
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITASQ 281
+ W D+N G + +G IV TAS
Sbjct: 109 E-------------------WDF--NFDVNARGVFLANQIACRHFLASNTKGVIVNTASL 147
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
AA +G LA Y++SKFA+ G+ +AL E+ +
Sbjct: 148 AAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIR 183
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 116 bits (292), Expect = 9e-30
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 52/217 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSGIG+ +A ++ G + ++AR ++L + +
Sbjct: 21 ITGASSGIGEAIARRFSEEGHPLLLLARRVERL----------------------KALNL 58
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+D++ D +A+ A GP +VN AGM L G ++
Sbjct: 59 PN--------TLCAQVDVT-DKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEAN 109
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ + M D+N+ G ++ +A++ MK R G I+ +S A
Sbjct: 110 EWQRM---------------------FDVNVLGLLNGMQAVLAPMKARNCGTIINISSIA 148
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
AAY +KFA+ +E + EV S + +
Sbjct: 149 GKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVM 185
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 116 bits (293), Expect = 9e-30
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 51/238 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG SGIG+ A AK GA+V + +E ++ EI
Sbjct: 32 VTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKA---------------- 75
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +D+S ++ S ++ + G V +LVN AG G + + +
Sbjct: 76 -----------FGVRVDVS-SAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEE 123
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W R ++ +N+ G +K ++ M++ G G I+ T S
Sbjct: 124 T--------WDR-------------IMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYT 162
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKP 339
A I AY +SK A+ A+ M+ + G+ + + P D+P F
Sbjct: 163 ATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVA-PGTIDSPYFTKIFAEAK 219
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 115 bits (291), Expect = 1e-29
Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 48/230 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG ++GIGK +A GA+V I R E+ + + +EI+ P+
Sbjct: 15 VTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAI------------ 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ V D+ + Q +++ V +L+N G+ ++ +
Sbjct: 63 ----------LQPVVADLGTE-----QGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDE 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D W + + ++N+ + +T++ ++ M +R G ++ AS+A
Sbjct: 108 D--------WFK-------------LFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEA 146
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFE 332
A + +A Y+++K + +L + +T+ +P T T G E
Sbjct: 147 AIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVE 196
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 115 bits (291), Expect = 2e-29
Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 52/239 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK- 161
+TG S GIG +A+ AA+ GA+V I A+ + I A +
Sbjct: 11 ITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAA-----------AAVNA 59
Query: 162 ---KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEE 218
+ + DI + + +R+A+ +D G + +LVN A +
Sbjct: 60 AGGQGLA----------LKCDIR-EEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLD 108
Query: 219 MTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVIT 278
M+ + + +N G+ +A + + Q I+
Sbjct: 109 TPMKR-------------------FD--LMQQVNARGSFVCAQACLPHLLQAPNPHILTL 147
Query: 279 ASQAANLGIY--GLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDT--DTPGFEN 333
A + + YT +K + L E G+ I L P T T
Sbjct: 148 APPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAIN-ALWPRTVIATDAINM 205
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 115 bits (290), Expect = 2e-29
Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S+GIGK VA+ A+ GA V + AR L +EI K
Sbjct: 37 ITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--------------GK 82
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
A P + D++ + +R L G + + V AG+ + +M ++
Sbjct: 83 ALP----------IRCDVT-QPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLE 131
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
+ ++ + D N+ G +A M +G G I+ TAS
Sbjct: 132 E-------------------FQR--IQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASM 170
Query: 282 AANLGIYG--LAAYTSSKFALKGFAEALYME 310
+ ++ ++ Y +SK A+ +A+ +E
Sbjct: 171 SGHIINIPQQVSHYCTSKAAVVHLTKAMAVE 201
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 114 bits (288), Expect = 2e-29
Identities = 46/271 (16%), Positives = 84/271 (30%), Gaps = 61/271 (22%)
Query: 103 VTGGSSGIGKHVAIEAAK---RGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEE 159
+TG S G G+ +A + A+ G+ + + AR E L Q +EE+ P+ K +
Sbjct: 11 LTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV------- 63
Query: 160 IKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGP----VYMLVNCAGMALCGT 215
+ D+ ++ L + P +L+N A +
Sbjct: 64 ---------------LAAADLG-TEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVS 107
Query: 216 LEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRG--RG 273
+ + D LA + LNL + +T + +
Sbjct: 108 KGFLNVND----------------LAEVNN--YWALNLTSMLCLTSGTLNAFQDSPGLSK 149
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP---DTD--- 327
+V +S A G Y + K A + L E + + + L P D D
Sbjct: 150 TVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE--EPSVRV-LSYAPGPLDNDMQQ 206
Query: 328 -TPGFENEEKSKPRETSLISQTGGLYRPEVV 357
+ + + + L G L
Sbjct: 207 LARETSKDPELRSKLQKLK-SDGALVDCGTS 236
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 115 bits (290), Expect = 2e-29
Identities = 48/251 (19%), Positives = 96/251 (38%), Gaps = 56/251 (22%)
Query: 95 APTNGTLS-----VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNP 149
P + +L ++GGS GIG +A A GA+V +VA+ + + I A
Sbjct: 1 GPGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAA--- 57
Query: 150 KFIRFIEYEEIK----KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLV 205
+EI+ +A P + DI D + + +A+ +++ G + + V
Sbjct: 58 --------KEIEEAGGQALP----------IVGDIR-DGDAVAAAVAKTVEQFGGIDICV 98
Query: 206 NCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVE 265
N A G++EE+ ++ + + + + GT ++++ +
Sbjct: 99 NNASAINLGSIEEVPLKR-------------------FD--LMNGIQVRGTYAVSQSCIP 137
Query: 266 GMKQRGRGCIVITAS-QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP 324
MK R I+ + Y +K+ + A + E++ +G+ L P
Sbjct: 138 HMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASN-TLWP 196
Query: 325 DT--DTPGFEN 333
T T +N
Sbjct: 197 RTTVATAAVQN 207
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 114 bits (288), Expect = 3e-29
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 47/216 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIGK +A+ K G V I ++ EI +A + ++
Sbjct: 7 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVK--------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+D+S D + + +A++ A G ++VN AG+A +E +T +
Sbjct: 58 ---------------VDVS-DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPE 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
V ++N+ G I +A VE K+ G G I+ SQ
Sbjct: 102 I-------------------VD--KVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ 140
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
A ++G LA Y+SSKFA++G + ++ G+T
Sbjct: 141 AGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGIT 176
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 114 bits (289), Expect = 3e-29
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 48/216 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SGIG+ +A A+ GAHV R + + + +EI
Sbjct: 36 VTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGG---------------- 78
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E V D++ D E + + + V +LVN AG+ EE+++
Sbjct: 79 --------GSAEAVVADLA-DLEGAANVAE-ELAATRRVDVLVNNAGIIARAPAEEVSLG 128
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
WR V+ +NL ++++ M G G IV AS
Sbjct: 129 R-------------------WR--EVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASML 167
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ G +AAY +SK A+ G AL E G+ +
Sbjct: 168 SFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGV 203
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 114 bits (288), Expect = 3e-29
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 51/228 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V+GG+ G+G GA V +++ E+ A
Sbjct: 12 VSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAA---------------- 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
YV LD++ ++A+ A+ G +++LVN AG+ GT+E+ +
Sbjct: 56 -----------RYVHLDVT-QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALT 103
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ W+ ++D+NL G +A+V+ MK+ GRG I+ +S
Sbjct: 104 E-------------------WQ--RILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIE 142
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
G YT++KFA++G ++ +E+ SG+ + ++ P TP
Sbjct: 143 GLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIH-PGLVKTP 189
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 114 bits (288), Expect = 4e-29
Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 47/243 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG SG+G+ A+ A GA +++V + L ++ + + P+ + +
Sbjct: 18 ITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVL---------- 67
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
D+S D + + + +R G + N AG E T
Sbjct: 68 ------------TTVADVS-DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTA 114
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + V+ +NL G + +++ M+++G G +V TAS
Sbjct: 115 AE-------------------FD--KVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASV 153
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPR 340
GI + Y ++K + G +E + G+ I + P TP EN K
Sbjct: 154 GGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIA-PGAIWTPMVENSMKQLDP 212
Query: 341 ETS 343
E
Sbjct: 213 ENP 215
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 114 bits (287), Expect = 4e-29
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 49/219 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ IG A+ GA V I DE +A E+++ + +
Sbjct: 18 VTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVV--------- 68
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTL-EEMTM 221
+D++ + E++++A++ ++ G V +LV CAG+ + E+MT
Sbjct: 69 ---------------MDVT-NTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTD 112
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
W +D+NL G +A+ M ++ +G IV S
Sbjct: 113 GQ-------------------WLK--QVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSM 151
Query: 282 AANLG--IYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + AAY +SK + + +L E G+
Sbjct: 152 SGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRA 190
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 113 bits (286), Expect = 5e-29
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 51/228 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+ G+G A +A GA V + +++ E+ A
Sbjct: 10 ITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAA---------------- 53
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
Y LD++ E+ + + A + G V LVN AG++ LE +++
Sbjct: 54 -----------RYQHLDVT-IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVE 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+R V+++NL G K ++ MK G G IV +S A
Sbjct: 102 R-------------------FR--KVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA 140
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
+G+ ++Y +SK+ ++G ++ +E+ + + ++ P T TP
Sbjct: 141 GLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVH-PGMTYTP 187
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 113 bits (285), Expect = 7e-29
Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 47/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + G+G A A GA V + L ++ + + +
Sbjct: 14 VTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG---------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V+ D++ D I +A V +L+N AG+ + E+ ++
Sbjct: 58 --------YDAHGVAFDVT-DELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELE 108
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
+ W+ VID NL ++++ + M R G I+ S
Sbjct: 109 N-------------------WQK--VIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL 147
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ +A YT++K +K ++ E Q +
Sbjct: 148 TSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQT 184
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 113 bits (285), Expect = 7e-29
Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 51/218 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SGIG + A GA + ++ R+ L +A +E+
Sbjct: 16 VTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA------------------ 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D++ D E + +A + PV +LVN AG+A E
Sbjct: 58 --------AVAARIVADVT-DAEAMTAAAA-EAEAVAPVSILVNSAGIARLHDALETDDA 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
WR V+ +N+ G ++A M RG G IV S +
Sbjct: 108 T-------------------WRQ--VMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMS 146
Query: 283 ANLGIYGL--AAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ ++Y +SK A+ AL E G+ +
Sbjct: 147 GTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRV 184
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 113 bits (286), Expect = 7e-29
Identities = 50/231 (21%), Positives = 84/231 (36%), Gaps = 54/231 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEI-KKACPNPKFIRFIEYEEIK 161
VTG SG+G+ VA+ A G V + R L + EI A
Sbjct: 33 VTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDA---------------- 76
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGT-LEEMT 220
V D++ D +++R+ +++ G V +L N AG +E++T
Sbjct: 77 ------------LCVPTDVT-DPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLT 123
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR--GCIVIT 278
W+ V+D NL G T+ MK + G I+
Sbjct: 124 FAQ-------------------WK--QVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINN 162
Query: 279 ASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
S +A A YT++K A+ G ++ ++ + + + DTP
Sbjct: 163 GSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTP 213
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 113 bits (286), Expect = 7e-29
Identities = 58/228 (25%), Positives = 82/228 (35%), Gaps = 51/228 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG +GIG VA A G HV D A +I
Sbjct: 34 VTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGA---------------- 77
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+D+S D + I + + + G V LV AG+ +L + T++
Sbjct: 78 -----------AACRVDVS-DEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVE 125
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D + R VI +NL G TK M +RG G IV +S A
Sbjct: 126 D--------FDR-------------VIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLA 164
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
+ + G AY SK + + E++ SG+ TL P DTP
Sbjct: 165 GQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLL-PAFVDTP 211
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 113 bits (286), Expect = 7e-29
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 56/201 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGSSGIG V + GA V V+ DEK + + K
Sbjct: 19 VTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK------------------- 59
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+D++ + E ++ A++ + G + +LVN AG+ L +
Sbjct: 60 ---------------IDVT-NEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTE 103
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
WR +ID+N+ G+ M K + M G G I+ AS
Sbjct: 104 I-------------------WR--RIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQ 142
Query: 283 ANLGIYGLAAYTSSKFALKGF 303
+ AAY +SK AL G
Sbjct: 143 SYAATKNAAAYVTSKHALLGL 163
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 113 bits (286), Expect = 7e-29
Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG +SGIG +A AK GA++ + +EI+ +E+
Sbjct: 30 ITGSTSGIGLAIARTLAKAGANIVLNGFGA------PDEIRTVT-----------DEVAG 72
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + D++ I + DR G +LVN AG+ +E+ ++
Sbjct: 73 LSSGT-----VLHHPADMT-KPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVE 126
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W +I +NL + H + + MK++G G I+ AS
Sbjct: 127 Q-------------------WDR--IIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAH 165
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPRE 341
+ +AY ++K + G + + +EV +SG+T+ ++C P TP E + + R
Sbjct: 166 GLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSIC-PGYVLTPLVEKQIPDQART 224
Query: 342 TSLISQTGGLYRPEVVKQ 359
G+ +V+ +
Sbjct: 225 R-------GITEEQVINE 235
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 113 bits (285), Expect = 8e-29
Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 47/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS GIG + E A GA V +R++K+L + +
Sbjct: 14 VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS------------------ 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDR-CGPVYMLVNCAGMALCGTLEEMTM 221
K + V D+S + + + G + +LVN AG+ + ++ T+
Sbjct: 56 -----KGFKVEASV-CDLS-SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTV 108
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D + ++ +N H++ +K RG +V +S
Sbjct: 109 ED-------------------YS--LIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV 147
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ L + A Y ++K A+ L E + + +
Sbjct: 148 SGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRV 184
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 113 bits (285), Expect = 9e-29
Identities = 44/228 (19%), Positives = 70/228 (30%), Gaps = 59/228 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIG V GA V + R +
Sbjct: 33 VTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD------------------------ 68
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ D+ + G + ++VN AG+ G + E T
Sbjct: 69 -----------LHLPGDLR-EAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDA 116
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D W + +N+ + +A + M G G IV AS
Sbjct: 117 D-------------------WS--LSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCW 155
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
G A Y +K AL + + M+ G+ I +C P + +TP
Sbjct: 156 GLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVC-PNEVNTP 202
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 115 bits (289), Expect = 9e-29
Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 53/239 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK- 161
+TG S GIGK +A++AAK GA++ I A+ + + I A EEI+
Sbjct: 50 ITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAA-----------EEIEA 98
Query: 162 ---KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEE 218
KA P +D+ D + I +A++ A+ + G + +LVN A +
Sbjct: 99 VGGKALP----------CIVDVR-DEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLD 147
Query: 219 MTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVIT 278
+ ++++N GT +KA + +K+ I+
Sbjct: 148 TPTKR-------------------LD--LMMNVNTRGTYLASKACIPYLKKSKVAHILNI 186
Query: 279 ASQAANLGIY--GLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDT--DTPGFEN 333
+ ++ AYT +K+ + + + E K + + L P T T +
Sbjct: 187 SPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVN-ALWPKTAIHTAAMDM 243
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 113 bits (285), Expect = 1e-28
Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 51/236 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S+GIG+ A+ A+ GA VTI R ++L + +++I A + + +
Sbjct: 11 ITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNS-------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCG----TLEE 218
V D++ L + + G + +LVN AG A+ T
Sbjct: 63 -------------VVADVT-TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTA 108
Query: 219 MTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVIT 278
+++ + ++LNL I +TK V + G IV
Sbjct: 109 QSIES-------------------YD--ATLNLNLRSVIALTKKAVPHLSSTK-GEIVNI 146
Query: 279 ASQAANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFE 332
+S A+ L Y+ +K A+ + +++ Q G+ + ++ P T
Sbjct: 147 SSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSIS-PGLVATGFGS 201
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 113 bits (285), Expect = 1e-28
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 48/221 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRG---AHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEE 159
+TG S+GIGK A+E + + + AR +KL + ++ I + PN K
Sbjct: 38 ITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAK--------- 88
Query: 160 IKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEE 218
+ LDI+ E I+ ++ + +LVN AG AL + +
Sbjct: 89 -------------VHVAQLDIT-QAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQ 134
Query: 219 MTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVIT 278
+ +DI+ + D N+ I++T+A++ + + G IV
Sbjct: 135 IATEDIQDV---------------------FDTNVTALINITQAVLPIFQAKNSGDIVNL 173
Query: 279 ASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
S A + Y +SKFA+ F ++L E+ + + +
Sbjct: 174 GSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVI 214
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 112 bits (283), Expect = 1e-28
Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 50/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG ++G G+ + ++G V R +++L + ++E+
Sbjct: 5 VTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNL---------------- 48
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEEMTM 221
LD+ + I L + +LVN AG+AL + ++
Sbjct: 49 -----------YIAQLDVR-NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASV 96
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D + M ID N G ++MT+A++ GM +R G I+ S
Sbjct: 97 EDWETM---------------------IDTNNKGLVYMTRAVLPGMVERNHGHIINIGST 135
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
A + G Y ++K ++ F+ L ++ + + +T
Sbjct: 136 AGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVT 173
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 113 bits (286), Expect = 1e-28
Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 43/217 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S+GIG+ A+ AK GA VTI R+E +L + +++I KA + I
Sbjct: 31 ITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINA-------- 82
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V D++ + + + + G + +LVN AG L
Sbjct: 83 -------------VVADVT-EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQP 128
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+E ++ LN I MT+ E + + G IV +S
Sbjct: 129 ----VEL-------------YQ--KTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIV 168
Query: 283 ANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A G Y +K AL + +++ Q G+ +
Sbjct: 169 AGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRV 205
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 113 bits (284), Expect = 1e-28
Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 49/219 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG +SG G+ A A+ G + + R E++L E+
Sbjct: 26 ITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTR--------------- 70
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEEMTM 221
+ ++LD+ D + +A+ + + L+N AG+AL + +
Sbjct: 71 ----------VLPLTLDVR-DRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDL 119
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGC-IVITAS 280
D M +D N+ G ++ T+ L+ + G G IV S
Sbjct: 120 DDWDTM---------------------VDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS 158
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
A G Y +K ++ F+ L +++ +G+ +T
Sbjct: 159 VAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVT 197
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 112 bits (283), Expect = 2e-28
Identities = 46/230 (20%), Positives = 76/230 (33%), Gaps = 48/230 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG +G+G+ +A + G V I R L A EI N
Sbjct: 38 VTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGN-------------I 84
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEEMTM 221
V D+ D + + + + +LVN AG + LEE+T
Sbjct: 85 V----------RAVVCDVG-DPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTF 133
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR--GCIVITA 279
+ W ++ NL G T+ MK + G I+
Sbjct: 134 EQ-------------------WNG--IVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNG 172
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
S +A A YT++K A+ G ++ ++ + + + T
Sbjct: 173 SISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATD 222
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 111 bits (280), Expect = 2e-28
Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+T + GIG+ A+ A+ GA V +E KL + ++
Sbjct: 11 LTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPG------------------- 51
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
I+ LD++K + + + + +L N AG GT+ + +
Sbjct: 52 ----------IQTRVLDVTK-----KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEK 96
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D W ++LN+ M KA + M + G I+ +S A
Sbjct: 97 D--------WDF-------------SMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVA 135
Query: 283 ANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
+++ G+ Y+++K A+ G +++ + Q G+ +C P DTP
Sbjct: 136 SSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVC-PGTVDTP 183
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 111 bits (281), Expect = 3e-28
Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 54/228 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG+ +A A+ GA V + + + E I A
Sbjct: 11 VTGGARGIGRAIAQAFAREGALVALCDLRPEGK-EVAEAIGGA----------------- 52
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ +D+ D ++ A G V +LVN A +A G+ + +
Sbjct: 53 ------------FFQVDLE-DERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLP 99
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ WR V+++NL +H++ M++ G G IV AS
Sbjct: 100 E-------------------WR--RVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 138
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
AAY +SK L +L +++ + + + P T
Sbjct: 139 GLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVA-PGAIATE 185
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 112 bits (282), Expect = 3e-28
Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 45/216 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG SGIG +A + G H I +R ++L A ++ A
Sbjct: 32 ITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRR------------- 78
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+S+D+ + +A+ A+ G + +L+NCA ++
Sbjct: 79 ----------CLPLSMDVR-APPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFN 127
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
++ TV+D++ GT ++++ L E + G IV +
Sbjct: 128 A-------------------FK--TVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATL 166
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
N G S+K A+ L +E + +
Sbjct: 167 GNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRV 202
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 111 bits (281), Expect = 3e-28
Identities = 42/217 (19%), Positives = 91/217 (41%), Gaps = 46/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS G+G +A A+ G V + +R+ ++ +A +++ +
Sbjct: 26 VTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--------------- 70
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + + D+S +YE ++ L+ ++ G + +VN AG+ EE +
Sbjct: 71 -------VETMAFR-CDVS-NYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLD 121
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITAS-Q 281
+ +R VI++NL+GT ++ + +++ I+ S
Sbjct: 122 E-------------------FRQ--VIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT 160
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + ++AY +SK + +AL E + G+ +
Sbjct: 161 VEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRV 197
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 111 bits (281), Expect = 3e-28
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 47/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VT + GIG +A A+ GAHV + +R ++ + + ++ +
Sbjct: 19 VTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGT---------- 68
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGM-ALCGTLEEMTM 221
C + E+ + A++ G V +LV+ A + G + + T
Sbjct: 69 VC--------------HVG-KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATE 113
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ W ++ +N+ T+ MTKA+V M++RG G ++I +S
Sbjct: 114 EV-------------------WDK--ILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSV 152
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A L Y SK AL G + L +E+ + +
Sbjct: 153 GAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRV 189
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 112 bits (283), Expect = 3e-28
Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 46/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG +G+GK + + GA I +R L E+I N
Sbjct: 31 ITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK------------- 77
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + D+ D + +++ + + G +++N A E ++
Sbjct: 78 ----------VHAIQCDVR-DPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPN 126
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITASQ 281
W+ T+ D+ L GT +T + + + K + + +
Sbjct: 127 A-------------------WK--TITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTI 165
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A G + S+K ++ +++L E + G+
Sbjct: 166 YAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRF 202
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 111 bits (280), Expect = 4e-28
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEI-KKACPNPKFIRFIEYEEIK 161
+TG + GIG+ A + GA V I D ++ QA EI A
Sbjct: 13 ITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAY--------------- 57
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
V +D++ ++I +A+ ++ G + +LVN A + + E+T
Sbjct: 58 -------------AVQMDVT-RQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITR 103
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITAS 280
+ + + +N+ GT+ +A M +GR G I+ AS
Sbjct: 104 ES-------------------YE--KLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS 142
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
QA G +A Y ++K A+ ++ +++ + +
Sbjct: 143 QAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRIN 179
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 111 bits (281), Expect = 4e-28
Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 54/247 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG GIG + GA V I +DE ++E+ A
Sbjct: 14 VTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAV---------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
++ D++ +++++ + + R G + +VN AG EE +
Sbjct: 58 ------------FILCDVT-QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSA 104
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
Q + + +++LNL GT +TK + +++ +G ++ +S
Sbjct: 105 QG--------FRQ-------------LLELNLLGTYTLTKLALPYLRK-SQGNVINISSL 142
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPR 340
+G Y ++K A+ +AL ++ G+ + + P + TP +E P
Sbjct: 143 VGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCIS-PGNIWTPLWEELAALMPD 201
Query: 341 ETSLISQ 347
+ I +
Sbjct: 202 PRASIRE 208
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 111 bits (281), Expect = 4e-28
Identities = 52/255 (20%), Positives = 96/255 (37%), Gaps = 49/255 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SGIG+ A+ A G V + R ++ + +EI A +
Sbjct: 33 ITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALE--------- 83
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA-LCGTLEEMTM 221
D+S D +R+A++ + + G + ++V AG+ + ++++
Sbjct: 84 ---------------ADVS-DELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKP 127
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ W I +NL GT V +KQRG G IV+ +S
Sbjct: 128 FE-------------------WD--ETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSI 166
Query: 282 AA--NLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKP 339
G AYT++K A + L +E+ + + + P +T +N +
Sbjct: 167 NGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHE 226
Query: 340 RETSLISQTGGLYRP 354
ET++ + P
Sbjct: 227 EETAIPVEWPKGQVP 241
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 111 bits (279), Expect = 5e-28
Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 57/208 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG+ +A G+ V ++ + +
Sbjct: 13 VTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKY------------------------ 48
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+++ D++ + + +++++ G + +LVN AG+ G +E M+M
Sbjct: 49 -----------DHIECDVT-NPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMG 96
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ WR +ID+NL+G + +K + M + IV +S
Sbjct: 97 E-------------------WR--RIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQ 135
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYME 310
A++ +AY +SK A+ G +++ ++
Sbjct: 136 ASIITKNASAYVTSKHAVIGLTKSIALD 163
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 111 bits (281), Expect = 5e-28
Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG++GIGK + E + G++V I +R ++L A +E++ P K R
Sbjct: 23 VTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQAR--------- 73
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + +I + E + + ++ +D G + LVN G E ++ +
Sbjct: 74 ----------VIPIQCNIR-NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSK 122
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIV-ITASQ 281
W V++ NL GT +M KA+ + G IV I
Sbjct: 123 G-------------------WH--AVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV-- 159
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
G +++ + ++L +E SG+ I
Sbjct: 160 PTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRI 196
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 110 bits (278), Expect = 7e-28
Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 47/216 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG +GIGK +AI A GA V + + +EI++ R
Sbjct: 16 ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR--------- 66
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
DI+ + + + A+ + G V +LVN AG +M M
Sbjct: 67 ---------------CDIT-SEQELSALADFAISKLGKVDILVNNAGGGG-PKPFDMPMA 109
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D +R +LN++ H+++ + M++ G G I+ S A
Sbjct: 110 D-------------------FRR--AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMA 148
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A + +Y SSK A + ++ + + +
Sbjct: 149 AENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRV 184
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 110 bits (278), Expect = 1e-27
Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 50/242 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SSGIG+ A+ A+ GA V + AR+ L + +EI +
Sbjct: 13 VTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALA--------- 63
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
D+ D + ++ A+ R G + N AG + G + +++
Sbjct: 64 ---------------GDVG-DEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSV 107
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ WR +D NL K V + G G + T+S
Sbjct: 108 EG-------------------WR--ETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSF 146
Query: 282 AANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKP 339
+ G G+A Y +SK L G +AL +E+ G+ + L P TDTP
Sbjct: 147 VGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALL-PGGTDTPANFANLPGAA 205
Query: 340 RE 341
E
Sbjct: 206 PE 207
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 109 bits (276), Expect = 1e-27
Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 47/209 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGGSSG+GK +A AK GA V I R ++KL +A+ EI++ +
Sbjct: 11 ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--------------GQ 56
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +D+ + ++I+ ++ ++ G + +L+N A E++++
Sbjct: 57 ILT----------VQMDVR-NTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVN 105
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITASQ 281
W +VI++ L GT + ++A+ + ++ +G I+ +
Sbjct: 106 G-------------------WN--SVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT 144
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYME 310
A G+ ++K + + L +E
Sbjct: 145 YAWDAGPGVIHSAAAKAGVLAMTKTLAVE 173
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 109 bits (276), Expect = 1e-27
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 49/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV--ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEI 160
VTGG+ GIG+ ++ + A G + + + E++ + + I+ A F+
Sbjct: 7 VTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVG------- 59
Query: 161 KKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMT 220
LD++ D N SA+ A ++ G +LVN AG+A L E+T
Sbjct: 60 -----------------LDVT-DKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVT 101
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITA 279
+D + + +N++ +A + G G I+ A
Sbjct: 102 EED-------------------LKQ--IYSVNVFSVFFGIQAASRKFDELGVKGKIINAA 140
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
S AA G L+AY+++KFA++G +A E+ G T
Sbjct: 141 SIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHT 178
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 108 bits (273), Expect = 3e-27
Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 50/243 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SGIG+ +A + A + V V E +L Q +E++ ++
Sbjct: 12 VTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVK--------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
D+S +++ ++ + + +L N AG M + E++
Sbjct: 63 ---------------ADVS-KKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSD 106
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ W R V+ +NLY + ++A++ M ++G+G IV TAS
Sbjct: 107 EL--------WER-------------VLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASI 145
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP---GFENEEKSK 338
A G + A YT +K L G ++ G+ LP T G +
Sbjct: 146 AGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELG 205
Query: 339 PRE 341
R
Sbjct: 206 MRT 208
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 108 bits (272), Expect = 4e-27
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 54/230 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+SG+G V GA V +E Q E+ +
Sbjct: 11 VTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERS---------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+V D+S + + R G + +LVN AG+ L G +E ++
Sbjct: 55 -----------MFVRHDVS-SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLE 102
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D + ++ +N + + MK+ G G I+ AS +
Sbjct: 103 D-------------------FS--RLLKINTESVFIGCQQGIAAMKETG-GSIINMASVS 140
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI---TLCLPPDTDTP 329
+ L I A Y++SK A+ A + ++ G I ++ P TP
Sbjct: 141 SWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIH-PDGIYTP 189
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 108 bits (272), Expect = 4e-27
Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 52/243 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+ GIG +A + + GA V I R +A + + +
Sbjct: 11 ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---------------DQ 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ D S D + GPV LVN AG+A+ ++EE T
Sbjct: 56 I----------QFFQHDSS-DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTA 104
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG-CIVITASQ 281
+ WR ++ +NL G T+ ++ MK +G G I+ +S
Sbjct: 105 E-------------------WR--KLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI---TLCLPPDTDTPGFENEEKSK 338
+G L AY +SK A++ +++ ++ + T+ P TP ++ ++
Sbjct: 144 EGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVH-PGYIKTPLVDDLPGAE 202
Query: 339 PRE 341
Sbjct: 203 EAM 205
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 107 bits (270), Expect = 6e-27
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 71/246 (28%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIE-----Y 157
VTGGS GIGK V + H I ++ ++FI+
Sbjct: 9 VTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAEN------------LKFIKADLTKQ 56
Query: 158 EEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLE 217
++I + I+ VS D + AG+ + G++
Sbjct: 57 QDITNV------LDIIKNVSFDG-----------------------IFLNAGILIKGSIF 87
Query: 218 EMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVI 277
++ ++ + V+DLN++ +I+ K L +K IV
Sbjct: 88 DIDIES-------------------IKK--VLDLNVWSSIYFIKGLENNLKVGAS--IVF 124
Query: 278 TASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEK 336
S + AYT SK A+ ++L +++ + + + T+C P DT + N +
Sbjct: 125 NGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVC-PGTVDTDLYRNLIQ 183
Query: 337 SKPRET 342
Sbjct: 184 KYANNV 189
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 107 bits (270), Expect = 7e-27
Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 56/230 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG +SGIG +A A+ GA++ + + A EI +
Sbjct: 9 VTGSTSGIGLGIAQVLARAGANIVLNGFGDPA--PALAEIARHGVK-------------- 52
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D+S D I + A G V +LVN AG+ +E+ ++
Sbjct: 53 ----------AVHHPADLS-DVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLE 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W +I LNL H T+ + GM+ R G I+ AS
Sbjct: 102 S-------------------WDK--IIALNLSAVFHGTRLALPGMRARNWGRIINIASVH 140
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGF 331
+G G AAY ++K + G + + +E S +T +C PG+
Sbjct: 141 GLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAIC-------PGW 183
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 107 bits (270), Expect = 8e-27
Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 53/250 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SSG G +A RG V + + L + A + K
Sbjct: 7 VTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYAD-------------K 53
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA---LCGTLEEM 219
V D++ D ++ +A+ M++ G + +LVN AG+ G L
Sbjct: 54 V----------LRVRADVA-DEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTT 102
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
++ + + V+ +N+ G +A++ M +G G IV A
Sbjct: 103 PVEQ--------FDK-------------VMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIA 141
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP---GFENEE 335
S A+ + G +AYT+SK A+ +++ ++ SG+ +C P +TP ++
Sbjct: 142 SVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVC-PGMIETPMTQWRLDQP 200
Query: 336 KSKPRETSLI 345
+ + + + I
Sbjct: 201 ELRDQVLARI 210
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 108 bits (272), Expect = 8e-27
Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG +A AK GA + +++ + + K A
Sbjct: 39 VTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAA----------------- 81
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
I YV D++ D + I++ + G + +LVN AG+ + EMT
Sbjct: 82 ------GINAHGYV-CDVT-DEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAA 133
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+R VID++L ++KA++ M ++G G I+ S
Sbjct: 134 Q-------------------FRQ--VIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMM 172
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ LG ++AY ++K LK + + E ++ +
Sbjct: 173 SELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQC 208
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 107 bits (269), Expect = 1e-26
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 48/215 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG++GIG+ +A A GA + I +A+ I+ ++
Sbjct: 12 ITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVK--------- 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+S ++ + + + G +LVN AG+ +E+T +
Sbjct: 61 ---------------CDVS-QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFE 104
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W+ ++N+ M KA V GMK+ G G I+ S
Sbjct: 105 Q-------------------WKK--TFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT 143
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
L I Y S+K A GF AL ++ + G+T
Sbjct: 144 YWLKIEAYTHYISTKAANIGFTRALASDLGKDGIT 178
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 107 bits (270), Expect = 1e-26
Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 50/212 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG VA A+ GA V I +A+ K + K +
Sbjct: 39 VTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKC-------- 90
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC--GTLEEMT 220
+IS D +++ + G + + V AG+ ++
Sbjct: 91 ----------------NIS-DPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDN 133
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITAS 280
W +I ++L G + + + + K+ G+G ++IT+S
Sbjct: 134 YDS-------------------WNK--IISVDLNGVYYCSHNIGKIFKKNGKGSLIITSS 172
Query: 281 QAANLGIYGL--AAYTSSKFALKGFAEALYME 310
+ + A Y ++K A A++L +E
Sbjct: 173 ISGKIVNIPQLQAPYNTAKAACTHLAKSLAIE 204
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 106 bits (268), Expect = 1e-26
Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 56/227 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIG A+ + GA VT + +
Sbjct: 12 VTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYP------------------------ 47
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+D++ D + Q + + LVN AG+ G ++++ +
Sbjct: 48 ----------FATEVMDVA-DAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKE 96
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D W+ +N+ G ++ + + +++ G IV AS A
Sbjct: 97 D-------------------WQQ--TFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDA 135
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
A+ G++AY +SK ALK A ++ +E+ SG+ + P TDT
Sbjct: 136 AHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTD 182
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 107 bits (269), Expect = 2e-26
Identities = 49/232 (21%), Positives = 79/232 (34%), Gaps = 55/232 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEI-KKACPNPKFIRFIEYEEIK 161
+TG +SGIG A GA V I R + L A EI A
Sbjct: 34 ITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGA---------------- 77
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ D + + + + G + +L AG L E+T
Sbjct: 78 ------------VGIQADSA-NLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTE 124
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + D N+ G + + + + + +V+T S
Sbjct: 125 EQ-------------------YD--DTFDRNVKGVLFTVQKALPLLARGSS--VVLTGST 161
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFE 332
A + G + Y +SK AL+ FA +++K G+ I TL P T+T G
Sbjct: 162 AGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLS-PGPTETTGLV 212
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 106 bits (267), Expect = 2e-26
Identities = 53/227 (23%), Positives = 82/227 (36%), Gaps = 61/227 (26%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V S GIG+ VA ++ GA VTI AR+E+ L ++
Sbjct: 24 VLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC----------------- 66
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+ KD + + ++ V +LV AG G +E+T +
Sbjct: 67 ----------------DLRKDLDLL-------FEKVKEVDILVLNAGGPKAGFFDELTNE 103
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D + ID I + + + MK++G G IV S +
Sbjct: 104 D--------FKE-------------AIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFS 142
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
I L S++ AL GF + L EV G+T+ P T+T
Sbjct: 143 VISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETE 189
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 106 bits (267), Expect = 2e-26
Identities = 53/259 (20%), Positives = 98/259 (37%), Gaps = 55/259 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG +SGIG +A A +GA + + D ++ + + +
Sbjct: 9 VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ---------------- 52
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ Y D+S E +R + A+ + G + +LVN AG+ +E+
Sbjct: 53 -------HGVKVLYDGADLS-KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPT 104
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ W + ++ LNL H T A + MK++G G I+ AS
Sbjct: 105 EK-------------------WDA--ILALNLSAVFHGTAAALPHMKKQGFGRIINIASA 143
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPR 340
+ +AY ++K + GF + +E G+T +C P TP E + +
Sbjct: 144 HGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAIC-PGWVRTPLVEKQISALAE 202
Query: 341 ETSLISQTGGLYRPEVVKQ 359
+ G+ + ++
Sbjct: 203 KN-------GVDQETAARE 214
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 106 bits (266), Expect = 3e-26
Identities = 46/231 (19%), Positives = 79/231 (34%), Gaps = 53/231 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEI-KKACPNPKFIRFIEYEEIK 161
V GG+ G+G + GA V + R+E + + +EE +
Sbjct: 13 VIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRV---------------- 56
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ DI+ D I A G + +L AG++ ++++
Sbjct: 57 ------------HALRSDIA-DLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSE 103
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ +N G + L +++ G IV T+S
Sbjct: 104 AS-------------------YDR--QFAVNTKGAFFTVQRLTPLIREGGS--IVFTSSV 140
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFE 332
A G G++ Y++SK AL FA L E+ G+ + P DTP
Sbjct: 141 ADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKG 191
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 106 bits (266), Expect = 4e-26
Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 47/216 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG + E A GA + AR+E +L + + +K
Sbjct: 19 VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ-------------- 64
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCG-PVYMLVNCAGMALCGTLEEMTM 221
+ D S +Q G + +L+N G + T
Sbjct: 65 ----------VTGSVCDAS-LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTA 113
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D + I NL H+++ +K G G I+ +S
Sbjct: 114 ED-------------------FSF--HISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI 152
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
A + + Y+++K AL A L E G+
Sbjct: 153 AGVVSASVGSIYSATKGALNQLARNLACEWASDGIR 188
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 106 bits (266), Expect = 5e-26
Identities = 41/242 (16%), Positives = 79/242 (32%), Gaps = 53/242 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG GIG + A+ GA V + E L A + +
Sbjct: 16 ITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGA---------------- 59
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGT--LEEMT 220
+ +D++ + ++R+ + +D G + ++ N A + + +MT
Sbjct: 60 -----------VHHVVDLT-NEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMT 107
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITAS 280
+ W +N GT+ M K + + G G IV +S
Sbjct: 108 VDV--------WDD-------------TFTVNARGTMLMCKYAIPRLISAGGGAIVNISS 146
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKP 339
A+ AY +K A++ + + + G+ + P TP E
Sbjct: 147 ATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIA-PGLVRTPRLEVGLPQPI 205
Query: 340 RE 341
+
Sbjct: 206 VD 207
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 104 bits (262), Expect = 1e-25
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 48/217 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SSGIG VA A RG V ARD K + A + ++
Sbjct: 29 VTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR--------------AAGHD 74
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ S D++ + + +A+ A++R GP+ +LVN AG G ++
Sbjct: 75 V----------DGSSCDVT-STDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDA 123
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALV--EGMKQRGRGCIVITAS 280
W V+D NL G +T+ ++ GM++ G G IV AS
Sbjct: 124 L-------------------WAD--VLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS 162
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
G+ A YT+SK + GF +++ E+ ++G+T
Sbjct: 163 TGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGIT 199
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 103 bits (260), Expect = 2e-25
Identities = 41/230 (17%), Positives = 66/230 (28%), Gaps = 63/230 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V GGS +G V + + + E
Sbjct: 27 VLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH------------------------ 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGT-LEEMTM 221
++ S E I+S ++ + V V AG G + +
Sbjct: 63 ------------SFTIKDS-GEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFL 109
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + +ID+NLY + + Q G V+T +
Sbjct: 110 KS-------------------VKG--MIDMNLYSAFASAHIGAKLLNQGGL--FVLTGAS 146
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQ--SGLTITLCLPPDTDTP 329
AA G+ AY ++K A + L E +G T LP DTP
Sbjct: 147 AALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP 196
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 104 bits (261), Expect = 2e-25
Identities = 56/245 (22%), Positives = 92/245 (37%), Gaps = 56/245 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SG G+ +A AK GA V IV RD+ + EI A
Sbjct: 14 ITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAA---------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA-LCGTLEEMTM 221
V+ DIS ++ +A++ A+ + G V +LVN AG+ E +
Sbjct: 58 -----------LAVAADIS-KEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEP 105
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG----CIVI 277
++ + R ++ +N+ G MT L+ K+ G I+
Sbjct: 106 EE--------FDR-------------IVGVNVRGVYLMTSKLIPHFKENGAKGQECVILN 144
Query: 278 TASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEK 336
AS A LA Y ++K + +AL +E+ + + + L P +TP
Sbjct: 145 VASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALN-PVAGETPLLTTFMG 203
Query: 337 SKPRE 341
E
Sbjct: 204 EDSEE 208
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 104 bits (261), Expect = 2e-25
Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 48/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
+TG S+G+GK +AI A A V + E + EEIKK
Sbjct: 12 ITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--------------G 57
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+A V D++ ++ + +Q A+ G + +++N AG+ + EM++
Sbjct: 58 EA----------IAVKGDVT-VESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSL 106
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
D W VID NL G ++ ++ + +G ++ +S
Sbjct: 107 SD-------------------WNK--VIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS 145
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ Y +SK +K E L +E G+ +
Sbjct: 146 VHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRV 183
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 103 bits (260), Expect = 2e-25
Identities = 47/237 (19%), Positives = 86/237 (36%), Gaps = 52/237 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG ++GIG+ +A AK GA V + + I++A +
Sbjct: 17 VTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLE--------- 67
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+++ D ++ + ++ A+D+ G + +LVN AG +M M
Sbjct: 68 ---------------CNVT-DEQHREAVIKAALDQFGKITVLVNNAGGGG-PKPFDMPMS 110
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D + LNL+ +++ M++ G G I+ +S A
Sbjct: 111 D-------------------FEW--AFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMA 149
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPP---DTD-TPGFENEE 335
+A+Y SSK A+ + +V G+ + + P TD E
Sbjct: 150 GENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVN-AIAPGAIKTDALATVLTPE 205
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 102 bits (258), Expect = 3e-25
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 57/218 (26%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS GIG+ +A RG V I +R+ ++ Q+ +
Sbjct: 7 VTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPT---------------- 50
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+ K ++ + ++ A++ G +++LV+ A + + E++ +
Sbjct: 51 ----------------DLEK--DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYE 92
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ WR V+ L+L + +A M + G G ++ S
Sbjct: 93 E-------------------WR--RVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVT 131
Query: 283 A--NLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
G + AYT++K AL G AL E + G+ +
Sbjct: 132 TFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRV 169
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 103 bits (259), Expect = 3e-25
Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 47/218 (21%)
Query: 103 VTGGS-SGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VT + +GIG A A GA V I E++L + ++++
Sbjct: 27 VTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLG------------- 73
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ E V D++ E + + + +++ G + +LVN AG+ + +MT
Sbjct: 74 RV----------EAVVCDVT-STEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTD 122
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
++ W V+++ L + T+A + G IV AS
Sbjct: 123 EE-------------------WDR--VLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS 161
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + Y ++K + +E + G+ I
Sbjct: 162 VLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRI 199
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 103 bits (260), Expect = 3e-25
Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 50/216 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+ GIG+ A + GA V I + + I
Sbjct: 21 ITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP----------------- 63
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGM--ALCGTLEEMT 220
I +V D++KD E++R+ + + + G + ++ G+ ++ E
Sbjct: 64 --------DVISFVHCDVTKD-EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAG 114
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITAS 280
+D + R V+D+N+YG + K M +G IV TAS
Sbjct: 115 NED--------FKR-------------VMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS 153
Query: 281 QAANLGIYGLA-AYTSSKFALKGFAEALYMEVKQSG 315
++ G++ YT++K A+ G +L E+ + G
Sbjct: 154 ISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYG 189
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 102 bits (257), Expect = 4e-25
Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 52/219 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIG+ A A+ GA V + + + ++I +
Sbjct: 14 VTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVA--------- 64
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC---GTLEEM 219
+D+S D E+ ++ + G + LVN A + L +
Sbjct: 65 ---------------VDVS-DPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTI 108
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+ ++ + +NL G + T+A+ + M +RG G IV +
Sbjct: 109 DPEY-------------------YKK--FMSVNLDGALWCTRAVYKKMTKRGGGAIVNQS 147
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
S A Y +K + G + L E+ + I
Sbjct: 148 STA---AWLYSNYYGLAKVGINGLTQQLSRELGGRNIRI 183
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 103 bits (259), Expect = 4e-25
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 38/230 (16%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIE-YEEIK 161
+TG + G G+ A+ A GA + +A D + + E ++
Sbjct: 16 ITGAARGQGRAHAVRMAAEGADI--IAVD----IAGKLPSCVPYDPASPDDLSETVRLVE 69
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
A R I +D D++ +R + + G + ++V AG+A +++T
Sbjct: 70 AAN------RRIVAAVVDTR-DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITP 122
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITAS 280
+D +R V+D+N+ GT + A + + GR G I++ +S
Sbjct: 123 ED-------------------FR--DVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS 161
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
A + YT+SK A+ G A A E+ + + + ++ P +TP
Sbjct: 162 AAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVH-PGPVNTP 210
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 103 bits (258), Expect = 5e-25
Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 53/223 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG A GA+V ++ R ++ E++ K K
Sbjct: 19 VTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-------------VK 65
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D+S + + + +Q GP+ L+ AG+++ E+T +
Sbjct: 66 T----------KAYQCDVS-NTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHE 114
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITAS- 280
D + V D+N++G + +A+ + Q+ + G IV+T+S
Sbjct: 115 D-------------------FAF--VYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM 153
Query: 281 ------QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
Q++ G Y SSK A + L E +G+
Sbjct: 154 SSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIR 196
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 103 bits (259), Expect = 5e-25
Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 45/208 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+SG+G+ + GA V ++ + ++L + +
Sbjct: 10 ITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNA---------------- 53
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V D+ ++ + A + + G + L+ AG+ T +
Sbjct: 54 -----------VGVVGDVR-SLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPE 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D A + + +N+ G IH KA + + G +V T S A
Sbjct: 102 D--------------KIDAAFD--DIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNA 144
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYME 310
G YT++K A+ G + E
Sbjct: 145 GFYPNGGGPLYTATKHAVVGLVRQMAFE 172
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 102 bits (257), Expect = 5e-25
Identities = 54/207 (26%), Positives = 76/207 (36%), Gaps = 51/207 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SSG+G V A+ GA V + + E+ A
Sbjct: 12 VTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAV---------------- 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + D++ + + +AL A G V+ LVNCAG A + +
Sbjct: 56 -----------RFRNADVT-NEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRS-- 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR------GRGCIV 276
G H L + + +NL GT +M + E M Q RG IV
Sbjct: 102 ------------GPHA-LDSFAR--TVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIV 146
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGF 303
TAS AA G G AAY +SK +
Sbjct: 147 NTASIAAFDGQIGQAAYAASKGGVAAL 173
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 101 bits (255), Expect = 1e-24
Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 57/218 (26%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG S GIG + R V +R K
Sbjct: 33 ITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPD----------------------- 69
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
I V+ DIS E ++ ++R G + LVN AG+ L EMT +
Sbjct: 70 ----------IHTVAGDIS-KPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQE 118
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
D + + +N+ G H+T+ M ++G G IV +
Sbjct: 119 D-------------------YDH--NLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSL 157
Query: 283 ANLGIYGLA--AYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + G+ + +K L +L ME +SG+ +
Sbjct: 158 VDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRV 195
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 101 bits (255), Expect = 1e-24
Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 59/233 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIG+ A +GA V +V + + +Q + + + K +
Sbjct: 12 VTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTL---------- 61
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ D++ D + +R + +D G + +LVN AG+
Sbjct: 62 ------------FIQCDVA-DQQQLRDTFRKVVDHFGRLDILVNNAGV------------ 96
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG---CIVITA 279
W + +NL I T ++ M ++ G I+ +
Sbjct: 97 ---------------NNEKNWEK--TLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 139
Query: 280 SQAANLGIYGLAAYTSSKFALKGF--AEALYMEVKQSGLTI-TLCLPPDTDTP 329
S A + + Y +SK + GF + AL + SG+ + +C P +T
Sbjct: 140 SLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAIC-PGFVNTA 191
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 101 bits (254), Expect = 1e-24
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 49/207 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+SG+G A +GA ++ +++ C
Sbjct: 17 ITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNC---------------- 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D++ +++++AL A + G V + VNCAG+A+ ++
Sbjct: 61 -----------VFAPADVT-SEKDVQTALALAKGKFGRVDVAVNCAGIAVASKT--YNLK 106
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR------GRGCIV 276
+ L ++ V+D+NL GT ++ + + M Q RG I+
Sbjct: 107 KGQTHT-----------LEDFQR--VLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVII 153
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGF 303
TAS AA G G AAY++SK + G
Sbjct: 154 NTASVAAFEGQVGQAAYSASKGGIVGM 180
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 101 bits (254), Expect = 2e-24
Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 50/207 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V+GG+ G+G+ G V I +K +E+
Sbjct: 35 VSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRA---------------- 78
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E+VS +++ +++ +A++ A Y +V G
Sbjct: 79 -----------EFVSTNVT-SEDSVLAAIEAANQLGRLRYAVVAHGG------------- 113
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR------GRGCIV 276
V ++ + G + + IDL L GT ++ + + + RG +V
Sbjct: 114 -FGVAQRIVQRDGSPADMGGFTK--TIDLYLNGTYNVARLVAASIAAAEPRENGERGALV 170
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGF 303
+TAS A G G AY ++K + G
Sbjct: 171 LTASIAGYEGQIGQTAYAAAKAGVIGL 197
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 100 bits (251), Expect = 2e-24
Identities = 32/230 (13%), Positives = 64/230 (27%), Gaps = 59/230 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V GG +G R V + E + A +K
Sbjct: 12 VYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMT----------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
D + + +A + V ++ AG A +
Sbjct: 55 ----------------DSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLF 98
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
++ + +++ + + + +K+ G + + ++
Sbjct: 99 KN-------------------CD--LMWKQSIWTSTISSHLATKHLKEGGL--LTLAGAK 135
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQ--SGLTITLCLPPDTDTP 329
AA G G+ Y +K A+ ++L + SG LP DTP
Sbjct: 136 AALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 185
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 100 bits (252), Expect = 4e-24
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + G G+ A+ A GA + + A +P+ + +E +
Sbjct: 20 ITGAARGQGRSHAVRLAAEGADIIACDICA----PVSASVTYAPASPE-----DLDETAR 70
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
R LD+ D +R + M++ G + ++V AG+ G + E+T +
Sbjct: 71 LVE--DQGRKALTRVLDVR-DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDE 127
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
W TVI +NL GT +A V M + G G IV+ +S
Sbjct: 128 Q-------------------WD--TVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSS 166
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKPR 340
A G Y++SK L L +E+ + G+ + ++ P +TP E E +
Sbjct: 167 AGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIH-PYSVETPMIEPEAMMEIF 225
Query: 341 ET 342
Sbjct: 226 AR 227
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 99.5 bits (249), Expect = 5e-24
Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 51/209 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG GIGK + ++ + G V + DEK+ +E
Sbjct: 7 VTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNL----------------- 49
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
Y D++ D ++ ++ AM++ + +LVN A G L + +
Sbjct: 50 -----------FYFHGDVA-DPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYE 97
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ + ++ + L +++ + + + +G I+ AS
Sbjct: 98 E-------------------FDY--ILSVGLKAPYELSRLCRDELIKN-KGRIINIASTR 135
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEV 311
A AY S+K + AL M +
Sbjct: 136 AFQSEPDSEAYASAKGGIVALTHALAMSL 164
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 99.6 bits (249), Expect = 6e-24
Identities = 50/232 (21%), Positives = 79/232 (34%), Gaps = 51/232 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG+ +A++ K GA V I R L +E + +
Sbjct: 10 VTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--------------GQ 55
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSAL-QPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
P V D S +RS Q ++ G + +LVN A G +
Sbjct: 56 CVP----------VVCDSS-QESEVRSLFEQVDREQQGRLDVLVNNAYA---GVQTILNT 101
Query: 222 QDIKVMEQPL--WLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
++ E P W + ++ L G + M G+G IV+ +
Sbjct: 102 RNKAFWETPASMWDD-------------INNVGLRGHYFCSVYGARLMVPAGQGLIVVIS 148
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGF 331
S + L Y K A A E+++ G++ + L PG
Sbjct: 149 SPGS-LQYMFNVPYGVGKAACDKLAADCAHELRRHGVSC-VSL-----WPGI 193
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 99.6 bits (249), Expect = 6e-24
Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 53/216 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VT G A+ ++ G V K+ + + +
Sbjct: 6 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETY----------------- 48
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL-CGTLEEMTM 221
L + ++ G V +LV+ A +++ +
Sbjct: 49 -------------PQLKPM-SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAV 94
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D +R ++ + A+ MK+R G I+ S
Sbjct: 95 ED-------------------YRG--AVEALQIRPFALVNAVASQMKKRKSGHIIFITSA 133
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
L+ YTS++ A AL E+ + +
Sbjct: 134 TPFGPWKELSTYTSARAGACTLANALSKELGEYNIP 169
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 98.8 bits (247), Expect = 1e-23
Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 48/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG+ +A A+ GA+V + R + ++ + K
Sbjct: 15 VTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSG-------------K 61
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V D+S D + A++ G + ++ AG+ L MT +
Sbjct: 62 V----------IGVQTDVS-DRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPE 110
Query: 223 DIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ +N+ GT + +A ++ + G G +V+T+S
Sbjct: 111 Q----------------------LNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSI 148
Query: 282 AANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ G G + Y ++K A GF +E+ +T+
Sbjct: 149 TGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITV 186
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 99.2 bits (248), Expect = 2e-23
Identities = 59/272 (21%), Positives = 99/272 (36%), Gaps = 34/272 (12%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + G G+ A+ A+ GA + +A D + + E
Sbjct: 16 VTGAARGQGRSHAVRLAQEGADI--IAVD----ICKPIRAGVVDTAIPASTPEDLAETAD 69
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
R I +D+ DY+ +++A+ +++ G + ++V AG TL++ +
Sbjct: 70 LVK--GHNRRIVTAEVDVR-DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSE 126
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITAS 280
+D W +ID+NL G KA V M GR G I++T+S
Sbjct: 127 ED-------------------WT--EMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS 165
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKP 339
Y ++K + G A +E+ Q + + ++ P TP NE K
Sbjct: 166 VGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVH-PTHVKTPMLHNEGTFKM 224
Query: 340 RETSLISQTGGLYRPEVVKQSGLTITLCLPPD 371
L + P L I P D
Sbjct: 225 FRPDLENPGPDDMAPICQMFHTLPIPWVEPID 256
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 96.6 bits (241), Expect = 2e-23
Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 71/227 (31%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+ G S +G V E ++ A V R
Sbjct: 8 LIGASGTLGSAVK-ERLEKKAEVITAGRHS------------------------------ 36
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V++DI+ +++ ++ G V +V+ G A L E+T +
Sbjct: 37 -----------GDVTVDITN-----IDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPE 80
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
I L G I++ ++ + +G +T
Sbjct: 81 K-------------------NA--VTISSKLGGQINLVLLGIDSLNDKGS--FTLTTGIM 117
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTP 329
I A+ + A+ FA++ +E+ + G+ I P +
Sbjct: 118 MEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRINTVSPNVLEES 163
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 98.4 bits (246), Expect = 2e-23
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 52/215 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG +SGIG+ A+ GA + V R+E+ L +A ++
Sbjct: 11 VTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEA---------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V D+S D + + + A++ G ++ + + AG+A + ++
Sbjct: 55 -----------IAVVADVS-DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLE 102
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W V+ +NL G+ + + E +++ G +V+T S A
Sbjct: 103 A-------------------WEK--VLRVNLTGSFLVARKAGEVLEEGGS--LVLTGSVA 139
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
LG +GLA Y + K + G A L +E+ + G+
Sbjct: 140 G-LGAFGLAHYAAGKLGVVGLARTLALELARKGVR 173
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 97.3 bits (243), Expect = 5e-23
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 48/217 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG +SGIG +A K G V + AR E+ L +E+++A
Sbjct: 27 VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT--------- 77
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+ I + + ++R GPV +LVN AG G E+ +
Sbjct: 78 ---------------CDVR-SVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADE 121
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALV--EGMKQRGRGCIVITAS 280
W V++ NL G +TK ++ GM +RG G IV AS
Sbjct: 122 L-------------------WLD--VVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
G+ A Y++SK + GF +AL +E+ ++G+T
Sbjct: 161 TGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGIT 197
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 95.7 bits (239), Expect = 1e-22
Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 47/217 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S G+GK AI A+ G ++ I AR +K L+ EEI+K
Sbjct: 9 VTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--------------V 54
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
K V ++ I+ Q + G + + VN A + + E+
Sbjct: 55 KVLV----------VKANVG-QPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEE 103
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
W +++N + + + M++ G G IV +S
Sbjct: 104 TH-------------------WDW--TMNINAKALLFCAQEAAKLMEKNGGGHIVSISSL 142
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ + SK AL+ L +E+ + +
Sbjct: 143 GSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIV 179
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 95.7 bits (239), Expect = 2e-22
Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
V G IG+ AI A+ GA+V + + A EI+K +
Sbjct: 13 VAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--------------R 58
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMT 220
A + D++ + + +A+ A D+ G ++ LV+ AG + T+ EM
Sbjct: 59 SALA----------IKADLT-NAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMD 107
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITAS 280
W V+D+NL K + M + G IV +S
Sbjct: 108 EAF-------------------WH--QVLDVNLTSLFLTAKTALPKMAKGGA--IVTFSS 144
Query: 281 QAANLG-IYGLAAYTSSKFALKGFAEALYMEV 311
QA G G AY +SK A+ F L EV
Sbjct: 145 QAGRDGGGPGALAYATSKGAVMTFTRGLAKEV 176
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 95.3 bits (238), Expect = 2e-22
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 50/216 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIGK +A A GA V + + + A I K
Sbjct: 11 VTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKA---------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
++ DIS D ++++ G + +LVN A + +++ +
Sbjct: 55 -----------RAIAADIS-DPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLD 102
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
WR +ID+NL GT +T+A + M+ G+ G ++ AS
Sbjct: 103 H-------------------WRK--IIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASN 141
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
G +AAY ++K + GF AL E+ + +T
Sbjct: 142 TFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNIT 177
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 95.7 bits (239), Expect = 2e-22
Identities = 42/210 (20%), Positives = 61/210 (29%), Gaps = 52/210 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGGS GIG+ +A + GA V I ARD + +
Sbjct: 34 VTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY----------------- 76
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ D+S R Q + + +LVN AG + LE +
Sbjct: 77 ----GDCQ----AIPADLS-SEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVS 127
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKA----LVEGMKQRGRGCIVIT 278
W V+ LN+ + L ++
Sbjct: 128 G-------------------WEK--VMQLNVTSVFSCIQQLLPLLRRSASAENPARVINI 166
Query: 279 ASQAANLGIYGLA-AYTSSKFALKGFAEAL 307
S A + A AY SK AL + L
Sbjct: 167 GSVAGISAMGEQAYAYGPSKAALHQLSRML 196
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 95.8 bits (239), Expect = 3e-22
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 48/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG+ +A A+ GA+V + AR ++L E+ +
Sbjct: 46 VTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL----------------- 88
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ V LD+S D + A + +D G + ++ AG+ L+ MT +
Sbjct: 89 ------GAGNVIGVRLDVS-DPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPE 141
Query: 223 DIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
V+D+N+ GT++ +A + + GRG +++T+S
Sbjct: 142 Q----------------------LSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSI 179
Query: 282 AANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ G G + Y +SK A GF +E+ G+T+
Sbjct: 180 TGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTV 217
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 94.5 bits (236), Expect = 3e-22
Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 54/224 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQA-QEEIKKACPNPKFIRFIEYEEIK 161
+TG S GIG A A+ GA V + R + ++ + F
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFA-------- 63
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC-GTLEEMT 220
D++ E + + + + G + +L+N AG + L E+
Sbjct: 64 ----------------ADLA-TSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEID 106
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-----GCI 275
+ + V+D N+ + TK + + + +
Sbjct: 107 DTF-------------------YDA--VMDANIRSVVMTTKFALPHLAAAAKASGQTSAV 145
Query: 276 VITASQAANLG-IYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ T S A + G G Y ++K L + + G+
Sbjct: 146 ISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRF 189
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 93.7 bits (234), Expect = 5e-22
Identities = 17/216 (7%), Positives = 45/216 (20%), Gaps = 49/216 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VT G + G V + Q
Sbjct: 6 VTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFE-------------------- 45
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
E + + + + +V+ + +
Sbjct: 46 ----------SENPGTIAL-AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGT 94
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
A R + + I + ++ + ++ G ++ S
Sbjct: 95 S----------------EADIRQ--MFEALSIFPILLLQSAIAPLRAAGGASVIFITSSV 136
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ Y ++ A E+ + + G+ +
Sbjct: 137 GKKPLAYNPLYGPARAATVALVESAAKTLSRDGILL 172
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 94.1 bits (235), Expect = 6e-22
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 50/213 (23%)
Query: 103 VTG--GSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEE 159
VTG G G+G A A+ GA V I A + + +E++K
Sbjct: 25 VTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG------------ 72
Query: 160 IKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEM 219
KA + + YE+ ++ + G + + AG + +
Sbjct: 73 -IKA----------KAYKCQVD-SYESCEKLVKDVVADFGQIDAFIANAGATADSGILDG 120
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+++ W V+ ++L GT H KA+ K+RG G +VITA
Sbjct: 121 SVEA-------------------WNH--VVQVDLNGTFHCAKAVGHHFKERGTGSLVITA 159
Query: 280 SQAANLGIY--GLAAYTSSKFALKGFAEALYME 310
S + ++ + +Y +K A +L E
Sbjct: 160 SMSGHIANFPQEQTSYNVAKAGCIHMARSLANE 192
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 93.1 bits (232), Expect = 7e-22
Identities = 27/230 (11%), Positives = 55/230 (23%), Gaps = 59/230 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V GG +G + K G V + + +
Sbjct: 8 VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVD------------------- 48
Query: 163 ACPNPKFIRFIEYVSLDIS-KDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ + + E + + V + AG G+
Sbjct: 49 ---------------GNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDF 93
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+I +++ + K +K G + +T +
Sbjct: 94 VK-------NADL-------------MIKQSVWSSAIAAKLATTHLKPGGL--LQLTGAA 131
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQS--GLTITLCLPPDTDTP 329
AA + Y +K A+ +L + + +P DTP
Sbjct: 132 AAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP 181
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 94.2 bits (235), Expect = 1e-21
Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 38/249 (15%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + G G+ AI A+ GA + +A D + + + +K P + E +
Sbjct: 33 ITGAARGQGRSHAITLAREGADI--IAID---VCKQLDGVKLPMSTPD-----DLAETVR 82
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMTM 221
R I +D+ D++ +++A+ + + G + +++ A + L M
Sbjct: 83 QVE--ALGRRIIASQVDVR-DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDP 139
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITAS 280
+ WR +ID+NL G + + + R G IV T+S
Sbjct: 140 KT-------------------WR--DMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS 178
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPGFENEEKSKP 339
G + Y +SK L G + +E+ + + +C P TP NE +
Sbjct: 179 IGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVC-PSSVATPMLLNEPTYRM 237
Query: 340 RETSLISQT 348
L + T
Sbjct: 238 FRPDLENPT 246
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 93.0 bits (232), Expect = 1e-21
Identities = 29/236 (12%), Positives = 65/236 (27%), Gaps = 52/236 (22%)
Query: 76 RGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
+S +L + ++ ++ + +TG S +G H A+ + G V I R E
Sbjct: 5 HHHHHHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH-- 62
Query: 136 LQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAM 195
+ E+++A A + D S I + +
Sbjct: 63 -ASVTELRQA----------------GA----------VALYGDFS-CETGIMAFIDLLK 94
Query: 196 DRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYG 255
+ + +V+ A L + + + +++
Sbjct: 95 TQTSSLRAVVHNASEWL-AETPGEEADN-------------------FTR--MFSVHMLA 132
Query: 256 TIHMTKALVEGMKQRGRGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+ + IV + G AY ++K L+ +
Sbjct: 133 PYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARF 188
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 93.5 bits (233), Expect = 1e-21
Identities = 43/272 (15%), Positives = 81/272 (29%), Gaps = 53/272 (19%)
Query: 81 VASREPHLQMKRYLAPTNGTLS-----VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKK 134
+ S H L P + VTG + IG+ +A++ + G V I +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEA 60
Query: 135 LLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPA 194
+ +E+ K N A D++ + + ++ +
Sbjct: 61 AVSLADELNKERSN-------------TA----------VVCQADLT-NSNVLPASCEEI 96
Query: 195 MDRC----GPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVID 250
++ C G +LVN A L + +D + T +I
Sbjct: 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGK---------TVETQVAE--LIG 145
Query: 251 LNLYGTIHMTKALVEGM-------KQRGRGCIVITASQAANLGIYGLAAYTSSKFALKGF 303
N +T + + IV + + Y K AL G
Sbjct: 146 TNAIAPFLLTMSFAQRQKGTNPNCTSSN-LSIVNLCDAMVDQPCMAFSLYNMGKHALVGL 204
Query: 304 AEALYMEVKQSGLTITLCLPPDTDTPGFENEE 335
++ +E+ G+ + P + P EE
Sbjct: 205 TQSAALELAPYGIRVNGVAPGVSLLPVAMGEE 236
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 91.4 bits (228), Expect = 5e-21
Identities = 35/249 (14%), Positives = 75/249 (30%), Gaps = 52/249 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI---VARDEKKLLQAQEEIKKACPNPKFIRFIEYEE 159
+ GG +G A A ++ + A+D + ++E++ +
Sbjct: 16 IAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQS----- 70
Query: 160 IKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEM 219
D+S + E + A G V + +N G L + E
Sbjct: 71 -------------------DLS-NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVET 110
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+ + + + + +N K + M G I+ A
Sbjct: 111 SEAE-------------------FDA--MDTINNKVAYFFIKQAAKHMNPNGH--IITIA 147
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKP 339
+ + Y +K ++ + A E+ + +++ P DT F +++K
Sbjct: 148 TSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYG-QETKE 206
Query: 340 RETSLISQT 348
SQ
Sbjct: 207 STAFHKSQA 215
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 92.0 bits (229), Expect = 5e-21
Identities = 33/242 (13%), Positives = 61/242 (25%), Gaps = 25/242 (10%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG + +G+ +A G V + R + + PN ++
Sbjct: 14 VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT-------VQ 66
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
N + + G +LVN A L
Sbjct: 67 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDE 126
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWT-VIDLNLYGTIHMTKALVEGM-------KQRGRG 273
R A+ + + N + KA + +
Sbjct: 127 DG--------HEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTN-Y 177
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFEN 333
I+ N + G YT +K AL+G + +E+ + + P +
Sbjct: 178 SIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMP 237
Query: 334 EE 335
Sbjct: 238 PA 239
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 92.3 bits (229), Expect = 6e-21
Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 36/220 (16%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG + + + G V + RD K +A E++K +
Sbjct: 17 VTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHEN------------- 63
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMA----------- 211
+ + LD++ + S G + +LVN AG+A
Sbjct: 64 ----------VVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKA 113
Query: 212 LCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRG 271
+ + E + + +K+ E+P L + +N G +T+ L+ ++
Sbjct: 114 MISDIGEDSEELVKIYEKPEAQELMSETYELAE--ECLKINYNGVKSVTEVLIPLLQLSD 171
Query: 272 RGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
IV +S +L E V
Sbjct: 172 SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMV 211
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 91.5 bits (228), Expect = 6e-21
Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 52/221 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTGG GIG +A A G + I D + + E+
Sbjct: 34 VTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--------------A 79
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC--GTLEEM 219
+ ++ D++ D + ++ + + G + LVN AG+A ++
Sbjct: 80 RV----------IFLRADLA-DLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDL 128
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM---KQRGRGCIV 276
++ + + ++ +NL GT+ T+A+++ M R I+
Sbjct: 129 KPEN-------------------FDT--IVGVNLRGTVFFTQAVLKAMLASDARASRSII 167
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
S +A + Y SK L F++ L + + ++G+
Sbjct: 168 NITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIA 208
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 90.7 bits (226), Expect = 1e-20
Identities = 46/218 (21%), Positives = 73/218 (33%), Gaps = 43/218 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG SGIG+ V++ A GA V D + +
Sbjct: 12 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP----------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCG-PVYMLVNCAGMALCGTLEEMTM 221
D+S + R L+ P ++V+CAG+ L M+
Sbjct: 55 GSKEGPPRGNHAAFQADVS-EARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSE 113
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITA 279
D W VI +NL GT +T+A + + RG I+ +
Sbjct: 114 DD----------------------WDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINIS 151
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
S +G G Y +SK + G + E+ + G+
Sbjct: 152 SIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIR 189
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 91.7 bits (228), Expect = 1e-20
Identities = 39/283 (13%), Positives = 69/283 (24%), Gaps = 30/283 (10%)
Query: 64 SSEPRTNLEPPCRGVRTVAS--REPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKR 121
PR + +S M PT VTG + +G+ +A
Sbjct: 13 GLVPRGSHMGSSHHHHHHSSGLVPRGSHMTA---PTVPVALVTGAAKRLGRSIAEGLHAE 69
Query: 122 GAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDI 180
G V + R + + PN ++ N
Sbjct: 70 GYAVCLHYHRSAAEANALSATLNARRPNSAIT-------VQADLSNVATAPVSGADGSAP 122
Query: 181 SKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRL 240
+ + G +LVN A L R
Sbjct: 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDG--------HEPCVGDRE 174
Query: 241 ALWRSWT-VIDLNLYGTIHMTKALVEGM-------KQRGRGCIVITASQAANLGIYGLAA 292
A+ + + N + KA + + I+ N + G
Sbjct: 175 AMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTN-YSIINMVDAMTNQPLLGYTI 233
Query: 293 YTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEE 335
YT +K AL+G + +E+ + + P +
Sbjct: 234 YTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPA 276
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 91.2 bits (227), Expect = 1e-20
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 35/210 (16%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + G G+ A+ A+ GA IVA D L + Q + A +P+ E +E +
Sbjct: 51 ITGAARGQGRTHAVRLAQDGAD--IVAID---LCRQQPNLDYAQGSPE-----ELKETVR 100
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ R I D+ D ++++ + A+ G + +LV+ G++ G + +T Q
Sbjct: 101 LVE--EQGRRIIARQADVR-DLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQ 157
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
W ++ NL G H +A++ M +RG+ G ++ +S
Sbjct: 158 Q-------------------WS--DILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST 196
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEV 311
G G + Y +SK ++G +L EV
Sbjct: 197 VGLRGAPGQSHYAASKHGVQGLMLSLANEV 226
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 89.5 bits (223), Expect = 4e-20
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 34/209 (16%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG+ G+G+ A+ A+ GA + I R E + + + E
Sbjct: 15 ITGGARGMGRSHAVALAEAGADIAICDRCEN-----SDVVGYPLATAD-----DLAETVA 64
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
K R +D+ D + S + A D G + + + AG++ L E+
Sbjct: 65 LVE--KTGRRCISAKVDVK-DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESA 121
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
W VI NL GT + A+ GM +R G IV +S
Sbjct: 122 Q-------------------WD--EVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSML 160
Query: 283 ANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+ + A+Y SSK+ + G + ++
Sbjct: 161 GHSANFAQASYVSSKWGVIGLTKCAAHDL 189
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 88.8 bits (221), Expect = 4e-20
Identities = 53/247 (21%), Positives = 81/247 (32%), Gaps = 50/247 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIG +A A G V I A + +I+ A
Sbjct: 32 VTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-------------- 77
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
KA D+S D +R A + G V +LVN AG+ T+ E
Sbjct: 78 KALT----------AQADVS-DPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGD 126
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ VI +NL GT + + + ++ GR I+ ++
Sbjct: 127 AV-------------------FDR--VIAVNLKGTFNTLREAAQRLRVGGR--IINMSTS 163
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEEKSKPRE 341
L Y ++K ++ L E++ +T+ P T T F E KS
Sbjct: 164 QVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFL-EGKSDEVR 222
Query: 342 TSLISQT 348
Sbjct: 223 DRFAKLA 229
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 89.2 bits (222), Expect = 5e-20
Identities = 46/214 (21%), Positives = 85/214 (39%), Gaps = 47/214 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG SGIG+ AI A+ GA V I ++ + +++K IE E +K
Sbjct: 54 VTGGDSGIGRAAAIAYAREGADVAINYLPAEE--EDAQQVKAL---------IE-ECGRK 101
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGM-ALCGTLEEMTM 221
A + D+S D RS + A + G + +L AG ++++T
Sbjct: 102 AVL----------LPGDLS-DESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTS 150
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + + +N++ +T+ + + +G I+ T+S
Sbjct: 151 EQ--------FQQ-------------TFAVNVFALFWITQEAIPLLP-KG-ASIITTSSI 187
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSG 315
A L Y ++K A+ ++ L +V + G
Sbjct: 188 QAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKG 221
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 88.6 bits (220), Expect = 6e-20
Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 49/197 (24%)
Query: 103 VTGGSSGIGKHVAIE-AAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTGG+ GIG + + V + ARD + A ++++ +P+F +
Sbjct: 9 VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ-------- 60
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
LDI D ++IR+ G + +LVN AG+A
Sbjct: 61 ----------------LDID-DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFH 103
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+V + N +GT + L+ +K +GR +V +S
Sbjct: 104 IQAEV---------------------TMKTNFFGTRDVCTELLPLIKPQGR--VVNVSSI 140
Query: 282 AANLGIYGLAAYTSSKF 298
+ + + KF
Sbjct: 141 MSVRALKSCSPELQQKF 157
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 88.1 bits (219), Expect = 6e-20
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 57/209 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+SG+G GA V ++ + + ++
Sbjct: 14 VTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADLGDRA---------------- 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ + D++ D + SAL A + G + ++VNCAG
Sbjct: 55 -----------RFAAADVT-DEAAVASALDLA-ETMGTLRIVVNCAGTG----------N 91
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR--------GRGC 274
I+V+ + G + LA +R ++D+NL G+ ++ + E + + RG
Sbjct: 92 AIRVLSR----DGVFS-LAAFRK--IVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGV 144
Query: 275 IVITASQAANLGIYGLAAYTSSKFALKGF 303
I+ TAS AA G G AAY++SK + G
Sbjct: 145 IINTASVAAFDGQIGQAAYSASKGGVVGM 173
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 87.6 bits (218), Expect = 8e-20
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 54/216 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + GIG+ AK GA + +E L +A E +
Sbjct: 10 ITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP---------------- 53
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +D++ D ++ A+ G + +V+ AG+ +M ++
Sbjct: 54 -------------VVMDVA-DPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLE 99
Query: 223 DIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
D W V+ +NL G+ + KA E M+++ G IV+TAS+
Sbjct: 100 D----------------------WELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR 137
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
LG G A Y +S + G L +E+ + G+
Sbjct: 138 VY-LGNLGQANYAASMAGVVGLTRTLALELGRWGIR 172
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 87.7 bits (218), Expect = 1e-19
Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 55/262 (20%)
Query: 77 GVRTVASREPHLQMKRYLAPTNGTLS-----VTGGSSGIGKHVAIEAAKRGAHVTIV-AR 130
V + + L P + +L VTG GIG+ +A+E +RG V + A
Sbjct: 3 AVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN 62
Query: 131 DEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSA 190
+ + IKK A V ++ E+I
Sbjct: 63 STESAEEVVAAIKKNGS--------------DAAC----------VKANVG-VVEDIVRM 97
Query: 191 LQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVID 250
+ A+ G + ++ + +G+ G ++++T ++ + R V
Sbjct: 98 FEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEE--------FDR-------------VFT 136
Query: 251 LNLYGTIHMTKALVEGMKQRGRGCIVITASQAAN-LGIYGLAAYTSSKFALKGFAEALYM 309
+N G + + + ++ GR +++ S + A Y+ SK A++ FA + +
Sbjct: 137 INTRGQFFVAREAYKHLEIGGR--LILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAI 194
Query: 310 EVKQSGLTITLCLPPDTDTPGF 331
++ +T+ + P T +
Sbjct: 195 DMADKKITVNVVAPGGIKTDMY 216
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 87.3 bits (217), Expect = 2e-19
Identities = 38/245 (15%), Positives = 70/245 (28%), Gaps = 42/245 (17%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
+TGG+ IG +A+ ++G V + E + E+ A
Sbjct: 16 ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAG------------- 62
Query: 162 KACPNPKFIRFIEYVSLDISKD---YENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEE 218
A D+S + + + G +LVN A L
Sbjct: 63 SAVL----------CKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLP 112
Query: 219 MTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRG-----RG 273
+ + A + N + + +A + G
Sbjct: 113 GDDTNGAADAK--------PIDAQVAE--LFGSNAVAPLFLIRAFARRQGEGGAWRSRNL 162
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFEN 333
+V +L + G YT +K AL G A +E+ + + P + P
Sbjct: 163 SVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP 222
Query: 334 EEKSK 338
+E +
Sbjct: 223 QETQE 227
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 85.7 bits (213), Expect = 3e-19
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 61/207 (29%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+SG+G+ A+ RG V ++ E +
Sbjct: 7 VTGGASGLGRAAALALKARGYRVVVLDLRR--------------------------EGED 40
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
YV D++ E++R A+ A + P++ +V+ AG+ L +
Sbjct: 41 L----------IYVEGDVT-REEDVRRAVARAQEE-APLFAVVSAAGVGLAEKILGK--- 85
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQR------GRGCIV 276
G H L +R V+++NL GT ++ + M++ RG IV
Sbjct: 86 -----------EGPHG-LESFRR--VLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIV 131
Query: 277 ITASQAANLGIYGLAAYTSSKFALKGF 303
TAS AA G G AAY +SK +
Sbjct: 132 NTASVAAFEGQIGQAAYAASKGGVVAL 158
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 86.8 bits (216), Expect = 4e-19
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 48/206 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TGG SGIG+ V+I AK GA++ I DE+ A E + ++K
Sbjct: 52 ITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG--DANETK---------------QYVEK 94
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGM-ALCGTLEEMTM 221
+ D+S D ++ + +Q + + G + +LVN LE +T
Sbjct: 95 EGVKCVLLPG------DLS-DEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITA 147
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + +N++ H+TKA + +K +G I+ TAS
Sbjct: 148 EQ--------LEK-------------TFRINIFSYFHVTKAALSHLK-QG-DVIINTASI 184
Query: 282 AANLGIYGLAAYTSSKFALKGFAEAL 307
A G L Y+++K A+ F +L
Sbjct: 185 VAYEGNETLIDYSATKGAIVAFTRSL 210
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 85.7 bits (213), Expect = 4e-19
Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 51/231 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG +SGIG + A+ G V + R +
Sbjct: 6 ITGSASGIGAALKELLARAGHTVIGIDRGQ------------------------------ 35
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVY-MLVNCAGMALCGTLEEMTM 221
+ D+S +A+ +DRCG V LV CAG+ G +
Sbjct: 36 -----------ADIEADLS-TPGGRETAVAAVLDRCGGVLDGLVCCAGV---GVTAANSG 80
Query: 222 QDIKVME--QPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA 279
+ V L G L+ + + + A + ++ G
Sbjct: 81 LVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAI 140
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
A G AY SK+A+ A ++ G+ + + P +TP
Sbjct: 141 ELAEQQG-QTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVA-PGAVETP 189
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 86.1 bits (214), Expect = 5e-19
Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 51/258 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ G G+ A++ A+ GA + + D + E + + + EE
Sbjct: 15 VTGGARGQGRSHAVKLAEEGADI--ILFD---ICHDIETNEYPLATSR-----DLEEAGL 64
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
K R +D+ D + L A+ G + ++V AG +C + +Q
Sbjct: 65 EVE--KTGRKAYTAEVDVR-DRAAVSRELANAVAEFGKLDVVVANAG--ICPLGAHLPVQ 119
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQA 282
+ D++ G I+ A + + I+ T S A
Sbjct: 120 A-------------------FA--DAFDVDFVGVINTVHAALPYLTSGAS--IITTGSVA 156
Query: 283 ANLGIY-----------GLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTPG 330
+ G A Y+ +K + + L ++ + + P + +T
Sbjct: 157 GLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIH-PTNVNTDM 215
Query: 331 FENEEKSKPRETSLISQT 348
+ + L + +
Sbjct: 216 LNSAPMYRQFRPDLEAPS 233
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 85.3 bits (212), Expect = 8e-19
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 50/233 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
TG GIG+ +AIE +RGA V + K + E+KK
Sbjct: 26 TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-------------- 71
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ + DIS + + A+ G + +++ +GM + E+T
Sbjct: 72 QGVA----------IQADIS-KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQ 120
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+ + + V +LN G + + ++ ++ GR I++T+S
Sbjct: 121 EL--------FDK-------------VFNLNTRGQFFVAQQGLKHCRRGGR--IILTSSI 157
Query: 282 AANL-GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFEN 333
AA + GI A Y SK A++GF A ++ G+T+ P T F+
Sbjct: 158 AAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDE 210
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 84.9 bits (211), Expect = 1e-18
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 50/231 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTGGS GIG +A A GA V + ++ EI++A
Sbjct: 36 VTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--------------G 81
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+A + D D E I A++ ++ G + +LVN AG+ LEE T+
Sbjct: 82 RAVA----------IRADNR-DAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTV 130
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIV-ITAS 280
D + V+ +N ++ + GR I+ I ++
Sbjct: 131 AD--------FDE-------------VMAVNFRAPFVAIRSASRHLGDGGR--IITIGSN 167
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGF 331
A + G++ Y++SK AL G + L ++ G+T+ + P TDT
Sbjct: 168 LAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMN 218
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 84.5 bits (210), Expect = 1e-18
Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 49/219 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+T G+ G+GK V + +G VT+ + A E +K E K
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTT---AMETMK--------------ETYKD 54
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC--GTLEEMT 220
+F++ D++ E++ ++ AM G + L+N AG + L +
Sbjct: 55 VEERLQFVQ------ADVT-KKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYE 107
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITA- 279
+ W +I NL H+ K +V M+++ G I+
Sbjct: 108 EDE-------------------WNE--MIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGF 146
Query: 280 -SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
+ G +A+ ++K L + + E + G+T
Sbjct: 147 QGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGIT 185
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 85.1 bits (211), Expect = 2e-18
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 58/224 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI----VARD-EKKLLQAQEEIKKACPNPKFIRFIEY 157
VTG G+G+ A+ A+RGA V + K A +++
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVV-------------- 59
Query: 158 EEIK----KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC 213
EEI+ KA N E ++ A+D G + ++VN AG+
Sbjct: 60 EEIRRRGGKAVAN--------------YDSVEAGEKLVKTALDTFGRIDVVVNNAGILRD 105
Query: 214 GTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG 273
+ ++ +D W + ++L G+ +T+A + MK++ G
Sbjct: 106 RSFSRISDED-------------------WDI--IQRVHLRGSFQVTRAAWDHMKKQNYG 144
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
I++TAS + G +G A Y+++K L G A L +E +++ +
Sbjct: 145 RIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIH 188
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 83.8 bits (208), Expect = 2e-18
Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 45/233 (19%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG + G G+ A+ A GA + +A D L + P+ E K
Sbjct: 18 ITGAARGQGRAHAVRLAADGADI--IAVD---LCDQIASVPYPLATPE-----ELAATVK 67
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
I D+ D E++ +ALQ +D G + ++V AG+
Sbjct: 68 LVE--DIGSRIVARQADVR-DRESLSAALQAGLDELGRLDIVVANAGI----APMSAGDD 120
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR-GCIVITASQ 281
W VID+NL G H K + + ++G G IV+ +S
Sbjct: 121 G-------------------WH--DVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS 159
Query: 282 AANLGIY----GLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTDTP 329
A G+ G Y ++K + G + + + ++ P +TP
Sbjct: 160 AGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIH-PSGVETP 211
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 83.7 bits (208), Expect = 3e-18
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 61/238 (25%)
Query: 87 HLQMKRYLAPTNGTLS-----------VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
H M A T G S VTG S GIG+ +A+E A+RGA V A E
Sbjct: 6 HHHMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGA 65
Query: 136 LQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAM 195
K+A + L+++ D + + ++ +
Sbjct: 66 EGIGAAFKQAGLEGRGAV------------------------LNVN-DATAVDALVESTL 100
Query: 196 DRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLY 254
G + +LVN AG+ M M+D ++ W VID NL
Sbjct: 101 KEFGALNVLVNNAGITQDQLA--MRMKD----DE----------------WDAVIDTNLK 138
Query: 255 GTIHMTKALVEGM-KQRGRGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+++A++ M K RG G IV S + G G Y ++K + G AL E+
Sbjct: 139 AVFRLSRAVLRPMMKARG-GRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI 195
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 83.4 bits (207), Expect = 3e-18
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 48/230 (20%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG GIG VA+ + GA V + A K + EIK
Sbjct: 23 VTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-------------- 68
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
A + DI I A+ G + + V+ +G+ G L+++T
Sbjct: 69 DAIA----------IKADIR-QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTE 117
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
++ + R V LN G + + + + GR ++ +++
Sbjct: 118 EE--------FDR-------------VFSLNTRGQFFVAREAYRHLTEGGR-IVLTSSNT 155
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGF 331
+ + + + Y+ SK A+ F + +T+ P T T F
Sbjct: 156 SKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMF 205
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 83.4 bits (207), Expect = 4e-18
Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 52/222 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTGGS GIG V AA++G V + A + + I ++
Sbjct: 31 VTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG--------------G 76
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG-MALCGTLEEMT 220
+A + D+ + +I + + G + LVN AG + ++EM+
Sbjct: 77 EAVA----------IPGDVG-NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMS 125
Query: 221 MQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGR--GCIVI 277
++ R ++ +N+ G+I V M + G IV
Sbjct: 126 VER--------IER-------------MLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVN 164
Query: 278 TASQAANLGIYG-LAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+S AA LG Y +SK A+ F L EV G+ +
Sbjct: 165 VSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRV 206
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 83.4 bits (207), Expect = 5e-18
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 50/211 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG GIG+ +A AK +HV ++R +K +EIK
Sbjct: 49 VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYA--------- 99
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
D+S E I + + V +LVN AG+ + M+
Sbjct: 100 ---------------GDVS-KKEEISEVINKILTEHKNVDILVNNAGITRDNLF--LRMK 141
Query: 223 DIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ ++ W V+ NL ++T+ + + M R G I+ +S
Sbjct: 142 N----DE----------------WEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISS 180
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
G G A Y+SSK + GF ++L E+
Sbjct: 181 IVGLTGNVGQANYSSSKAGVIGFTKSLAKEL 211
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 82.2 bits (204), Expect = 7e-18
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 47/216 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTGG GIG + K G V + + ++ E+ K +
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFD------------- 64
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
++ D+++ + A G + +LVN AG+ +MT
Sbjct: 65 -----------FYASEGNVG-DWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTR 112
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQ 281
+D W++ VID NL ++TK +++GM +RG G I+ +S
Sbjct: 113 ED-------------------WQA--VIDTNLTSLFNVTKQVIDGMVERGWGRIINISSV 151
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
G +G Y+++K + GF +L EV G+T
Sbjct: 152 NGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVT 187
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 84.8 bits (210), Expect = 1e-17
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 58/224 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI---------VARDEKKLLQAQEEIKKACPNPKFIR 153
+TG G+GK+ ++E AK GA V + + K +EI K
Sbjct: 13 ITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG------- 65
Query: 154 FIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALC 213
A + ++ D + I ++ A+ G V++++N AG+
Sbjct: 66 -------GVAVADYN----------NVL-DGDKI---VETAVKNFGTVHVIINNAGILRD 104
Query: 214 GTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRG 273
++++MT +D ++ VID++L G +TKA +++ G
Sbjct: 105 ASMKKMTEKD-------------------YKL--VIDVHLNGAFAVTKAAWPYFQKQKYG 143
Query: 274 CIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
IV T+S A G +G A Y S+K AL GFAE L E + +
Sbjct: 144 RIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIK 187
Score = 81.3 bits (201), Expect = 2e-16
Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 50/239 (20%)
Query: 79 RTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQA 138
++ + + +TG +G+GK A AK GA V V D K +
Sbjct: 303 EARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKV--VVNDFKDATKT 360
Query: 139 QEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRC 198
+EIK A +A P+ D++KD E I ++ +D+
Sbjct: 361 VDEIKAAG--------------GEAWPDQH----------DVAKDSEAI---IKNVIDKY 393
Query: 199 GPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIH 258
G + +LVN AG+ + +M+ Q+ W S V ++L GT +
Sbjct: 394 GTIDILVNNAGILRDRSFAKMSKQE-------------------WDS--VQQVHLIGTFN 432
Query: 259 MTKALVEGMKQRGRGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
+++ ++ G I+ S + G +G A Y+SSK + G ++ + +E ++ +
Sbjct: 433 LSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIK 491
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 81.4 bits (202), Expect = 1e-17
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 50/218 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIG VA A +GA V A + + + +K+ + +
Sbjct: 10 VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLV--------- 60
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
L+IS D E+I++ + +LVN AG+ + M M
Sbjct: 61 ---------------LNIS-DIESIQNFFAEIKAENLAIDILVNNAGITRDNLM--MRMS 102
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQR-GRGCIVITAS 280
+ ++ W+S VI+ NL M+K V GM K+R GR I+ S
Sbjct: 103 E----DE-------------WQS--VINTNLSSIFRMSKECVRGMMKKRWGR--IISIGS 141
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
+ G G Y ++K + GF+++L EV +T+
Sbjct: 142 VVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITV 179
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 81.5 bits (202), Expect = 2e-17
Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 56/246 (22%)
Query: 81 VASREPHLQMKRYLAPTNGTLS--------VTGGSSGIGKHVAIEAAKRGAHVTIV-ARD 131
+A H M A T G S VTGG G+G ++ G V + +
Sbjct: 1 MAHHHHH-HMGTLEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER 59
Query: 132 EKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSAL 191
+ + A + + ++D++ D+E+
Sbjct: 60 NDHVSTWLMHERDAGRD------------------------FKAYAVDVA-DFESCERCA 94
Query: 192 QPAMDRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDL 251
+ + G V +L+N AG+ T +MT D W + V+
Sbjct: 95 EKVLADFGKVDVLINNAGITRDATFMKMTKGD-------------------WDA--VMRT 133
Query: 252 NLYGTIHMTKALVEGMKQRGRGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+L ++TK + GM +R G IV S + G +G A Y S+K + GF + L +E
Sbjct: 134 DLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALET 193
Query: 312 KQSGLT 317
+ G+T
Sbjct: 194 AKRGIT 199
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 79.8 bits (198), Expect = 4e-17
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 50/212 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
+TG S GIG+ +A+ A+ G + I ++ +K + EE ++
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR---------------- 49
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+ + ++ + E + + A + G + LVN AG+ L + M
Sbjct: 50 -------GSPLVAVLGANLL-EAEAATALVHQAAEVLGGLDTLVNNAGITRDTLL--VRM 99
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITA 279
+D E W V++ NL T+ V+ M K R G IV
Sbjct: 100 KD----ED----------------WEAVLEANLSAVFRTTREAVKLMMKARF-GRIVNIT 138
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
S LG G A Y +SK L GF A+ E
Sbjct: 139 SVVGILGNPGQANYVASKAGLIGFTRAVAKEY 170
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 79.5 bits (197), Expect = 5e-17
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 53/211 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG S GIGK +A A+RGA V A E + +
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNG---------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+ ++L+++ + E+I + L+ D G V +LVN AG+ L M M+
Sbjct: 58 -----------KGMALNVT-NPESIEAVLKAITDEFGGVDILVNNAGITRDNLL--MRMK 103
Query: 223 DIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ E+ W +++ NL ++KA++ GM K+R G I+ S
Sbjct: 104 E----EE----------------WSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVGS 142
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+G G A Y ++K + GF +++ EV
Sbjct: 143 VVGTMGNAGQANYAAAKAGVIGFTKSMAREV 173
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 78.7 bits (195), Expect = 9e-17
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 49/211 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S G+GK +A + GA++ + + L EE K A N +
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAK-------- 61
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
D+ + E++ + ++ AMD G + +LVN AG+ + + M
Sbjct: 62 ----------------GDVK-NPEDVENMVKTAMDAFGRIDILVNNAGITRDTLM--LKM 102
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ + W V++ NL TKA+ + M KQ+ G I+ S
Sbjct: 103 SE----KD-------------WDD--VLNTNLKSAYLCTKAVSKIMLKQKS-GKIINITS 142
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
A +G G A Y +SK L GF +++ E
Sbjct: 143 IAGIIGNAGQANYAASKAGLIGFTKSIAKEF 173
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 78.3 bits (194), Expect = 1e-16
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 49/211 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIGK +A+ K G V + AR K + ++I+
Sbjct: 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFG-------- 57
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
D+S ++ + ++ A+D G + ++VN AG+ L + M
Sbjct: 58 ----------------GDVS-KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLL--IRM 98
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ Q W VIDLNL G T+A + M K+R G I+ AS
Sbjct: 99 KK----SQ-------------WDE--VIDLNLTGVFLCTQAATKIMMKKRK-GRIINIAS 138
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+G G A Y ++K + GF++ E
Sbjct: 139 VVGLIGNIGQANYAAAKAGVIGFSKTAAREG 169
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 81.0 bits (200), Expect = 2e-16
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 60/231 (25%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI------VARDEKKLLQAQEEIKKACPNPKFIRFIE 156
VTG +G+G+ A+ A+RGA V + + D A +
Sbjct: 24 VTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVV-------------- 69
Query: 157 YEEIK----KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL 212
+EI+ +A + + D + ++ A+ G V +LVN AG+
Sbjct: 70 -DEIRKAGGEAVADYN----------SVI-DGAKV---IETAIKAFGRVDILVNNAGILR 114
Query: 213 CGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR 272
+L + + QD W V D++L G+ T+A MK++
Sbjct: 115 DRSLVKTSEQD-------------------WNL--VNDVHLKGSFKCTQAAFPYMKKQNY 153
Query: 273 GCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLP 323
G I++T+S + G +G YT++K L G A + +E ++ + + +P
Sbjct: 154 GRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVP 204
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 77.9 bits (193), Expect = 2e-16
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 51/212 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIG+ +AI+ AK+GA+V + A +E+K + +EIKK + +R
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVR-------- 60
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
D++ + E++ + ++ +D G V +LVN AG+ L M M
Sbjct: 61 ----------------ADVA-NAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLL--MRM 101
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITA 279
++ E+ W TVI+ NL G TKA+ M +QR G IV A
Sbjct: 102 KE----EE----------------WDTVINTNLKGVFLCTKAVSRFMMRQRH-GRIVNIA 140
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
S G G A Y ++K + G + E+
Sbjct: 141 SVVGVTGNPGQANYVAAKAGVIGLTKTSAKEL 172
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 77.9 bits (193), Expect = 2e-16
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 51/212 (24%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIG+ +A++ A+ G +V + A ++K EEIK + I+
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQ-------- 60
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
+++ D + +++ ++ + + G + +LVN AG+ L M M
Sbjct: 61 ----------------ANVA-DADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLL--MRM 101
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSW-TVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITA 279
++ ++ W VID NL G + + M +QR G I+ +
Sbjct: 102 KE----QE----------------WDDVIDTNLKGVFNCIQKATPQMLRQRS-GAIINLS 140
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
S +G G A Y ++K + G ++ E+
Sbjct: 141 SVVGAVGNPGQANYVATKAGVIGLTKSAAREL 172
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 77.4 bits (191), Expect = 3e-16
Identities = 31/242 (12%), Positives = 62/242 (25%), Gaps = 53/242 (21%)
Query: 90 MKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNP 149
M + ++G ++GIG G + + +
Sbjct: 1 MSIIV--------ISGCATGIGAATRKVLEAAGHQIVGIDIRD----------------- 35
Query: 150 KFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAG 209
V D+S ++ + LV CAG
Sbjct: 36 ------------------------AEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAG 71
Query: 210 MALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQ 269
+ + + + + + L + ++ + H+
Sbjct: 72 LGPQTKVLGNVV-SVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALA 130
Query: 270 RGRGCIVITASQAANLG-IYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-TLCLPPDTD 327
G + + G G AY SK AL ++G+ + T+ P T+
Sbjct: 131 LEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIA-PGATE 189
Query: 328 TP 329
TP
Sbjct: 190 TP 191
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 77.6 bits (192), Expect = 3e-16
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 49/211 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI-VARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIG+ +A+E A GA V + A + I A ++
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVK-------- 84
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTM 221
D+S + + ++R G + +LVN AG+ L + M
Sbjct: 85 ----------------ADVS-QESEVEALFAAVIERWGRLDVLVNNAGITRDTLL--LRM 125
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ + W+S V+DLNL G ++A + M KQR G I+ AS
Sbjct: 126 KR----DD-------------WQS--VLDLNLGGVFLCSRAAAKIMLKQRS-GRIINIAS 165
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEV 311
+G G A Y+++K + G + + E+
Sbjct: 166 VVGEMGNPGQANYSAAKAGVIGLTKTVAKEL 196
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 77.2 bits (191), Expect = 4e-16
Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 63/244 (25%)
Query: 87 HLQMKRYLAPTNGTLS----------VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLL 136
H M A T G S VTG + GIG+ +A +GA V + E KL
Sbjct: 6 HHHMGTLEAQTQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLK 65
Query: 137 QAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMD 196
+ ++ K S ++S D ++I+ + A
Sbjct: 66 EIAADLGKDV---------------------------FVFSANLS-DRKSIKQLAEVAER 97
Query: 197 RCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGT 256
+ +LVN AG+ G + MQD + W V+ +NL
Sbjct: 98 EMEGIDILVNNAGITRDGLF--VRMQD----QD-------------WDD--VLAVNLTAA 136
Query: 257 IHMTKALVEGM-KQR-GRGCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQS 314
+T+ L+ M ++R GR I+ S +G G Y ++K L GF++AL E+
Sbjct: 137 STLTRELIHSMMRRRYGR--IINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASR 194
Query: 315 GLTI 318
+T+
Sbjct: 195 NITV 198
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 76.8 bits (190), Expect = 4e-16
Identities = 48/210 (22%), Positives = 77/210 (36%), Gaps = 47/210 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIG+ +A + A G+ V I ++ EEI
Sbjct: 12 VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHG---------- 61
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +++ E+I A + + + +LVN AG+ + M
Sbjct: 62 -------------VEMNLL-SEESINKAFEEIYNLVDGIDILVNNAGITRDKLF--LRMS 105
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITASQ 281
W V+ +NL GT +T+ + M KQR G IV +S
Sbjct: 106 L----LD-------------WEE--VLKVNLTGTFLVTQNSLRKMIKQRW-GRIVNISSV 145
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEV 311
G G Y+++K L GF ++L E+
Sbjct: 146 VGFTGNVGQVNYSTTKAGLIGFTKSLAKEL 175
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 76.3 bits (188), Expect = 2e-15
Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 73/264 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTI------VARDEKKLLQAQEEIKKACPNPKFIRFIE 156
VTG GIG+ A+ A GA V + + A + +
Sbjct: 32 VTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVV------------- 78
Query: 157 YEEIK----KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMAL 212
+EI +A + +++ D++ +Q A++ G + +LVN AG+
Sbjct: 79 -DEITAAGGEAVADGS----------NVA-DWDQAAGLIQTAVETFGGLDVLVNNAGIVR 126
Query: 213 CGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGR 272
+ + ++ + + VI ++L G + + +
Sbjct: 127 DRMIANTSEEE-------------------FDA--VIAVHLKGHFATMRHAAAYWRGLSK 165
Query: 273 ------GCIVITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI-------- 318
G I+ T+S A G G Y+++K + E+ + G+T+
Sbjct: 166 AGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSAR 225
Query: 319 ---TLCLPPDTDTPGFENEEKSKP 339
T + + ++ + P
Sbjct: 226 TRMTETVFAEMMATQDQDFDAMAP 249
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 74.5 bits (184), Expect = 3e-15
Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 61/217 (28%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG +A A G V + R
Sbjct: 20 VTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFG---------------------- 57
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V +D++ D + + A + GPV +LV+ AG++ L M M
Sbjct: 58 -------------VEVDVT-DSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFL--MRMT 101
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQR-GRGCIVITAS 280
+ E+ + VI+ NL G + + M + + GR ++ S
Sbjct: 102 E----EK-------------FEK--VINANLTGAFRVAQRASRSMQRNKFGR--MIFIGS 140
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
+ GI A Y +SK + G A ++ E+ ++ +T
Sbjct: 141 VSGLWGIGNQANYAASKAGVIGMARSIARELSKANVT 177
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 76.2 bits (188), Expect = 4e-15
Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 52/218 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTG + GIG +A A+ GA V + D A E++K+ +++
Sbjct: 218 VTGAARGIGATIAEVFARDGATVVAIDVDG-----AAEDLKR-----------VADKVGG 261
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCG-PVYMLVNCAGMALCGTLEEMTM 221
++LD++ + + + G V +LVN AG+ L M
Sbjct: 262 TA-----------LTLDVT-ADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLL--ANM 307
Query: 222 QDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITAS 280
+ ++ W + VI +NL +T+ LV G G ++ +S
Sbjct: 308 DE----KR-------------WDA--VIAVNLLAPQRLTEGLVGNGTIGEG-GRVIGLSS 347
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
A G G Y ++K + G AEAL + G+TI
Sbjct: 348 MAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITI 385
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 73.7 bits (182), Expect = 5e-15
Identities = 54/216 (25%), Positives = 79/216 (36%), Gaps = 59/216 (27%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
VTGG+ GIG +A A G V I R +
Sbjct: 26 VTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLA---------------------- 63
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
V DI+ D E + A + + GPV +L+ AG+ L M M
Sbjct: 64 -------------VKCDIT-DTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLL--MRMS 107
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQRGRGCIVITASQ 281
+ E + S V++ NL GT + K M + + +G +V+ +S
Sbjct: 108 E----ED-------------FTS--VVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSV 147
Query: 282 AANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLT 317
LG G A Y +SK L GFA +L E+ +T
Sbjct: 148 VGLLGSAGQANYAASKAGLVGFARSLARELGSRNIT 183
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 72.5 bits (179), Expect = 1e-14
Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 57/218 (26%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG SSGIG +A K G+ V I +E+KL +K
Sbjct: 19 ITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNY---------------- 62
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+++ + E + + + + +LV AG+ + M+
Sbjct: 63 -----------TIEVCNLA-NKEECSNLI----SKTSNLDILVCNAGITSDTLA--IRMK 104
Query: 223 DIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGM-KQR-GRGCIVITAS 280
D + + VID+NL + + ++ M ++R GR I+ +S
Sbjct: 105 D----QD-------------FDK--VIDINLKANFILNREAIKKMIQKRYGR--IINISS 143
Query: 281 QAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTI 318
G G A Y +SK L G ++L EV G+T+
Sbjct: 144 IVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITV 181
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 71.4 bits (176), Expect = 3e-14
Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 55/253 (21%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV-ARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
VTG S GIG+ +A A GA V I +++ + EI+
Sbjct: 12 VTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--------------G 57
Query: 162 KACPNPKFIRFIEYVSLDISKD------YENIRSALQPAMDRCGPVYMLVNCAGMALCGT 215
A + ++ Y ++ + LQ +L+N AG+
Sbjct: 58 SAFS----------IGANLESLHGVEALYSSLDNELQNRTGS-TKFDILINNAGIGPGAF 106
Query: 216 LEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQRGRGCI 275
+EE T Q + R ++ +N + + + ++ R I
Sbjct: 107 IEETTEQF--------FDR-------------MVSVNAKAPFFIIQQALSRLRDNSR--I 143
Query: 276 VITASQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPDTDTPGFENEE 335
+ +S A + + AY+ +K A+ L ++ G+T+ LP T
Sbjct: 144 INISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELL 203
Query: 336 KSKPRETSLISQT 348
+ + +
Sbjct: 204 SDPMMKQYATTIS 216
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 63.9 bits (156), Expect = 1e-11
Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 75/252 (29%)
Query: 89 QMKRYLAPTNGTLSVTGGSSGIGKHVA---IEAAKRGAHVTIVARDEKKLLQAQEEIKKA 145
M L +TG + G+G + + + H+ R+ ++ + + ++ K
Sbjct: 20 HMNSIL--------ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKN 70
Query: 146 CPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQ--PAMDRCGPVYM 203
N I + +D+ +++ + + + + +
Sbjct: 71 HSN------------------------IHILEIDLR-NFDAYDKLVADIEGVTKDQGLNV 105
Query: 204 LVNCAGMALC-GTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKA 262
L N AG+A + + Q+ L T N I + KA
Sbjct: 106 LFNNAGIAPKSARITAVRSQE--------LLDTLQT-------------NTVVPIMLAKA 144
Query: 263 LVEGMKQ-----------RGRGCIVITASQAANLGIY---GLAAYTSSKFALKGFAEALY 308
+ +K+ GR I+ +S ++ G+ AY +SK AL ++L
Sbjct: 145 CLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLS 204
Query: 309 MEVKQSGLTITL 320
+++ +
Sbjct: 205 VDLYPQRIMCVS 216
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 61.9 bits (151), Expect = 8e-11
Identities = 49/234 (20%), Positives = 75/234 (32%), Gaps = 80/234 (34%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+TG +SG+G A E A+RGA V + RD +K A +
Sbjct: 21 ITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQ----------------- 63
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQ 222
+E LD+ D ++R D +L+N AG
Sbjct: 64 ----------VEVRELDLQ-DLSSVRRFA----DGVSGADVLINNAG------------- 95
Query: 223 DIKVMEQPLWL--RGYHTRLALWRSWTVIDLNLYGTIHM--TKALVEGMKQRGRGCIVIT 278
+M P L G+ +++ N G H T L+ + R +V
Sbjct: 96 ---IMAVPYALTVDGFESQIG---------TNHLG--HFALTNLLLPRLTDR----VVTV 137
Query: 279 ASQAANLGI------------YG-LAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
+S A G Y AY+ SK A F L + +G +
Sbjct: 138 SSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLR 191
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 58.1 bits (141), Expect = 8e-10
Identities = 39/244 (15%), Positives = 76/244 (31%), Gaps = 72/244 (29%)
Query: 103 VTGGSSGIGKHVAIEAAKRGA--HVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEI 160
VTG + GIG + + K H+ ARD +K + +
Sbjct: 8 VTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSR--------------- 52
Query: 161 KKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCG--PVYMLVNCAGMALC-GTLE 217
+ + L ++ +++ + + + G + +L+N AG+ L GT
Sbjct: 53 ------------VHVLPLTVT-CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNT 99
Query: 218 EMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGTIHMTKALVEGMKQ-------- 269
E N + +T+ L+ +K
Sbjct: 100 EPNRAV--------IAEQLDV-------------NTTSVVLLTQKLLPLLKNAASKESGD 138
Query: 270 ---RGRGCIV-IT---ASQAANLG---IYGLAAYTSSKFALKGFAEALYMEVKQSGLTIT 319
R ++ I+ S N + + AY SK A+ F L +++K + +
Sbjct: 139 QLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVV 198
Query: 320 LCLP 323
P
Sbjct: 199 NFCP 202
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 53.7 bits (129), Expect = 4e-08
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 80 TVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQ 139
VA + V G+ +G A A GA V + R K A
Sbjct: 105 GVALVVKAAG----GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 160
Query: 140 EEIKKACP 147
+ + K
Sbjct: 161 DSVNKRFK 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 3e-07
Identities = 55/314 (17%), Positives = 91/314 (28%), Gaps = 115/314 (36%)
Query: 16 SRAQTWSRRAAAYEQS---------------RAEPHLQMKRYLAPTNGTLSVDGAAGSFK 60
+ +W + + A P+ L P+ S++ G
Sbjct: 284 AETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNT----SLPPSILEDSLENNEG--- 333
Query: 61 NFKSSEPRTNLEP-P---CRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAI 116
P P + ++E Q++ Y+ TN L GK V I
Sbjct: 334 -----------VPSPMLSISNL----TQE---QVQDYVNKTNSHLPA-------GKQVEI 368
Query: 117 EAAKRGAHVTIVA---RDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKF-IRF 172
+ GA +V+ + L + K P+ I + E K KF RF
Sbjct: 369 -SLVNGAKNLVVSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERK-----LKFSNRF 420
Query: 173 IEYVSLDISK----DYENIRSALQPAMDRCG-----------------PVYMLVNCAGM- 210
L ++ L PA D PVY + + +
Sbjct: 421 -----LPVASPFHSHL------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 211 ALCGTLEEMTMQDIKVMEQPL-WLRGYHTRLALWRSWTVIDL---NLYGTIHMTKALVEG 266
L G++ E + I + P+ W + A ++D G +T +G
Sbjct: 470 VLSGSISERIVDCI--IRLPVKWETTTQFK-ATH----ILDFGPGGASGLGVLTHRNKDG 522
Query: 267 MKQRGRGCIVITAS 280
G VI A
Sbjct: 523 -----TGVRVIVAG 531
Score = 43.9 bits (103), Expect = 1e-04
Identities = 44/258 (17%), Positives = 71/258 (27%), Gaps = 96/258 (37%)
Query: 106 GS--SGIGKHV--AIEAAKRGAHVTIVARDEKKLLQA-----QEEIKKACPNPK-----F 151
GS G+G + +AA+ + R + + + NP F
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQD-----VWNRADNHFKDTYGFSILDIVIN---NPVNLTIHF 1676
Query: 152 -------IR----FIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSAL------QPA 194
IR + +E I + I F E S + + + L QPA
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 195 MDRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLY 254
+ L+ A +S +I +
Sbjct: 1736 L-------TLM---EKAA---------------------------FEDLKSKGLIPADAT 1758
Query: 255 --GTIH--------------MT-KALVEGMKQRGRGCIVITASQAANLGIYGLAAYTSSK 297
G H M+ ++LVE + RG V YG+ A +
Sbjct: 1759 FAG--HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 298 FALKGFAEALYMEVKQSG 315
A EAL V++ G
Sbjct: 1817 VAASFSQEALQYVVERVG 1834
Score = 37.0 bits (85), Expect = 0.018
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 23/93 (24%)
Query: 392 SQTGG----LYRPEVVAKQLLEDALKGNYFSTVGLESYLITTLCAGFSP--IVSIQETFI 445
SQ G LY+ A+ + A +++ T GFS IV +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRA-----------DNHFKDTY--GFSILDIVINNPVNL 1672
Query: 446 QAFLMGPLRLTAI---YLHWTFDNIVKKCRKSQ 475
G + I Y F+ IV K++
Sbjct: 1673 -TIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Score = 32.3 bits (73), Expect = 0.48
Identities = 30/209 (14%), Positives = 48/209 (22%), Gaps = 93/209 (44%)
Query: 322 LPPDTDTPGFENEEKSKPRE---------TSLISQTGGLYRPEVVK-------QSGL--- 362
LP T+ ++E + E +SL+ + +V+ L
Sbjct: 41 LPEPTEGFAADDEPTTPA-ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 363 ---TITLCLPPDTDTP---------------GFENEEKSKPRETSLISQT---------- 394
+ L + DT K ++L
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 395 -GG----------------LYRPEVVA---------KQLLEDALKGNYFSTVGL------ 422
GG Y V +L+ L T GL
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 423 --------ESYLITTLCAGFS-P-IVSIQ 441
+ YL++ S P I IQ
Sbjct: 220 ENPSNTPDKDYLLS---IPISCPLIGVIQ 245
Score = 31.9 bits (72), Expect = 0.50
Identities = 35/232 (15%), Positives = 66/232 (28%), Gaps = 99/232 (42%)
Query: 18 AQ----TWSRRAAAYEQSRAEPHLQMKRYLAPTNGTLSVDG---A----AGSFKNFKSSE 66
Q + AA+E +++ + A G S+ G A A + +S
Sbjct: 1732 TQPALTLMEK--AAFEDLKSKGLIPADATFA---G-HSL-GEYAALASLADVM-SIES-- 1781
Query: 67 PRTNLEPPCRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRG-AHV 125
V V R G+ VA+ + G ++
Sbjct: 1782 ----------LVEVVFYR------------------------GMTMQVAVPRDELGRSNY 1807
Query: 126 TIVARDEKKLLQ--AQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKD 183
++A + ++ +QE ++ E + K +E V +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVV-----------ERVGKRTG-----WLVEIV------N 1845
Query: 184 YENIRSALQPAMDRCGPVYMLVNCAGM-----ALCGTLEEMTMQDIKVMEQP 230
Y N+ Y V AG + L + +Q I ++E
Sbjct: 1846 Y-NVE----------NQQY--V-AAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 31.6 bits (71), Expect = 0.77
Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 45/183 (24%)
Query: 280 SQAANLGIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLP--PDTDTPGFENEEKS 337
SQ +G + Y +SK A + A G +I + P T F E+
Sbjct: 1626 SQEQGMG---MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 338 KPRE--TSLISQT---GGLYRPEVVKQSGLTITLCLPPDTDTPGFENEEKSKPRETSLIS 392
+ RE +++I +T G L ++ K+ T F +E+ L+S
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--------FRSEK-------GLLS 1727
Query: 393 QTG----GLYRPEVVAKQLLEDALKGN-----YF---STVGLESYLITTLCAGFSPIVSI 440
T L E A + L+ KG F S +G E Y L + + ++SI
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKS--KGLIPADATFAGHS-LG-E-Y--AALAS-LADVMSI 1779
Query: 441 QET 443
+
Sbjct: 1780 ESL 1782
Score = 29.2 bits (65), Expect = 3.7
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 44/131 (33%)
Query: 353 RPEVVKQSGLTITL-------------------CLPPDTDTPGFENEEKSKPRETSLISQ 393
RP + L L LP T+ ++E + L+ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA---ELVGK 63
Query: 394 ----TGGLYRPEVVAK--QLLEDALKGNYFSTVGLESYL----ITTLCAGF-----SPIV 438
L P V + Q+L L F YL I L A + +V
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCL--TEFEN----CYLEGNDIHALAAKLLQENDTTLV 117
Query: 439 SIQETFIQAFL 449
+E I+ ++
Sbjct: 118 KTKE-LIKNYI 127
Score = 29.2 bits (65), Expect = 3.9
Identities = 73/411 (17%), Positives = 122/411 (29%), Gaps = 143/411 (34%)
Query: 137 QAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKD----YENI-RSAL 191
Q QE+ K P P F +E P +F+ YVS + ++ + L
Sbjct: 32 QLQEQFNKILPEPT-EGFAADDEP--TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 192 QPAMDRCGPVYML---VNCAGMALCGTLEEMTMQDIKVMEQPLWLRGY-HTRLALWRSWT 247
+ C Y+ ++ AL L + D +++ ++ Y R+ R +
Sbjct: 89 T-EFENC---YLEGNDIH----ALAAKLLQ--ENDTTLVKTKELIKNYITARIMAKRPF- 137
Query: 248 VIDLNLYGTIHMTKALVEGMKQRGRGCIVITASQAANLGIY----G----------LAA- 292
AL A N + G L
Sbjct: 138 --------DKKSNSALFR-------------AVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 293 YTSSKFALKGF----AEALYMEVKQS---------GLTITLCLPPDTDTPGFE---NEEK 336
Y + + AE L ++ + GL I L ++TP + +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 337 SKPRETSLISQTGGL-----YRPEVV-KQSGLTITLCLPPDTDTPGFENEEKSKPRETSL 390
S P LI G+ Y V K G TPG E +S + +
Sbjct: 237 SCP----LI----GVIQLAHY--VVTAKLLGF-----------TPG---ELRSYLKGATG 272
Query: 391 ISQTGGLYRPEVVAK--------QLLEDALKGNYFSTVGLES---YLITTLCAGF----- 434
SQ GL +A+ + A+ F +G+ Y T+L
Sbjct: 273 HSQ--GLVTAVAIAETDSWESFFVSVRKAIT-VLFF-IGVRCYEAYPNTSLPPSILEDSL 328
Query: 435 -------SPIVSIQ-------ETFIQAF---LMGPLRLTAIYLHWTFDNIV 468
SP++SI + ++ L ++ I L N+V
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLV 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 3e-07
Identities = 58/545 (10%), Positives = 139/545 (25%), Gaps = 186/545 (34%)
Query: 3 IEKFGPRKYEIEASRAQTWSRRAAAYEQSRAEPHLQMKRYLAPTNGTLSVDGAAGSFKNF 62
++KF +E + + + + +P + + Y+ + + +
Sbjct: 79 VQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD------------RLY 120
Query: 63 KSSEPRTNLEPPCRGVRTVASREPHLQMKRYLA---PTNGTLSVTGGSSGIGKHV-AIEA 118
++ V+ +P+L++++ L P + + G G GK A++
Sbjct: 121 NDNQV---FAK-----YNVSRLQPYLKLRQALLELRPAKN-VLIDGV-LGSGKTWVALD- 169
Query: 119 AKRGAHVTIVARDEKKLLQAQEEIKKACPNPKF-IRFIEYEEIKKACPNPKFIRFIEYVS 177
V K ++ F + + + ++ +
Sbjct: 170 ---------VCLSYK--------VQCKMDFKIFWLNLKNCNSPE------TVLEMLQKLL 206
Query: 178 LDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYH 237
I ++ + R + + + ++++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR------------------IHSIQAELRRLLKSKPYENCL- 247
Query: 238 TRLAL---WRSWTVIDLNLYGTIHMTKALVEGMKQRGRGC-IVITASQAANLGIYGLAAY 293
L L + NL C I++T A
Sbjct: 248 --LVLLNVQNAKAWNAFNL-------------------SCKILLTTRFKQVTDFLSAATT 286
Query: 294 T--SSKFALKGFAE-------ALYMEVKQSGL----------TITLC---LPPDTDTPGF 331
T S Y++ + L +++ + T
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 332 ----ENEEKSKPRETSLISQTGGLYR---------PEVVKQSGLTITLCL----PPDTDT 374
++ + E+SL YR P TI L L +D
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDV 404
Query: 375 PGFENEEKSKPRETSLISQTG--------GLY------RPEVVA--KQLLE-----DALK 413
N+ SL+ + +Y A + +++
Sbjct: 405 MVVVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 414 GNYFSTVGLESYLITTLCAGFSPIV----SIQETFIQAFLMGPLRLTAIYLHWTFDNIVK 469
+ L+ Y +S I +I+ + + ++L + F + +
Sbjct: 461 SDDLIPPYLDQYF-------YSHIGHHLKNIEHP--ERMTL----FRMVFLDFRF--LEQ 505
Query: 470 KCRKS 474
K R
Sbjct: 506 KIRHD 510
Score = 30.6 bits (68), Expect = 1.5
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 20/60 (33%)
Query: 370 PDTDTPGFENEE-----KSKPRETSLISQTGGLYR--------PEVVAKQLLEDALKGNY 416
D EE SK + G R E + ++ +E+ L+ NY
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS-------GTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 42.4 bits (100), Expect = 1e-04
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIK 143
+ G S +G + EA RG VT V R +K+ E +K
Sbjct: 9 LIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLK 49
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 41.9 bits (98), Expect = 2e-04
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIK 143
+ G + G + EA RG VT + R+ K+ Q ++I
Sbjct: 5 IIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDIN 45
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 40.8 bits (96), Expect = 3e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
+ G + G +A + G VT++ RD +L
Sbjct: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 40.8 bits (95), Expect = 4e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
V G + G + EA +RG V V RD +K
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA 37
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 40.0 bits (94), Expect = 8e-04
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
+ G + +GK + + + AR +++
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV 37
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 103 VTGGSSGIGKHVAIEAAK-RGAHVTIVARDEK 133
+ GG G+G HVAI+ A RGA V AR
Sbjct: 156 IQGGGGGVG-HVAIQIALARGARVFATARGSD 186
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 39.3 bits (92), Expect = 0.001
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
V G + + +++ E +G + R+E++
Sbjct: 26 VVGANGKVARYLLSELKNKGHEPVAMVRNEEQG 58
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 37.9 bits (89), Expect = 0.005
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
+ V + +G A++ A+ G V A +KL
Sbjct: 128 KVLVQAAAGALGTA-AVQVARAMGLRVLAAASRPEKLALPLA 168
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 38.0 bits (89), Expect = 0.006
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQEEIKKA 145
++ +SG+G+ I+ A G V RD + + + +K
Sbjct: 170 SVIQNASNSGVGQ-AVIQIAAALGLRTINVVRDRPDIQKLSDRLKSL 215
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 37.8 bits (87), Expect = 0.006
Identities = 49/294 (16%), Positives = 82/294 (27%), Gaps = 42/294 (14%)
Query: 103 VTGGSSGIGKHVAIEAA-KRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
V G SSG G I AA GA V ++ K + + K
Sbjct: 66 VIGASSGYGLASRITAAFGFGADTLGVFFEKPG-----TASKAGTAGWYNSAAFD-KHAK 119
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNC--AGMALCGTLEEM 219
A K I + ++ E I++ + G V ++V + + E+
Sbjct: 120 AAGLYSKSINGDAFSDAARAQVIELIKT------EMGGQVDLVVYSLASPVRKLPGSGEV 173
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLN---LYGTIH---------MTKALVEGM 267
+K + Q T ++ + + TI AL
Sbjct: 174 KRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAG 233
Query: 268 KQRGRGCIVITASQAANL--GIYGLAAYTSSKFALKGFAEALYMEVKQSGLTITLCLPPD 325
V + + IY A +K L A+ L + + G + +
Sbjct: 234 VLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKS 293
Query: 326 TDT------PGF-------ENEEKSKPRETSLISQTGGLYRPEVVKQSGLTITL 366
T P K K I Q L+R + +Q G +
Sbjct: 294 VVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERLYRQDGQPAEV 347
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 37.1 bits (86), Expect = 0.007
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 89 QMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAH-VTIVARDEKKL 135
MK L + G I +HV + A + T+ AR K+
Sbjct: 22 HMKNVL--------ILGAGGQIARHVINQLADKQTIKQTLFARQPAKI 61
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 36.8 bits (86), Expect = 0.013
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQE 140
+T G+S + K I AK G + R ++++ ++
Sbjct: 167 AFVMTAGASQLCKL-IIGLAKEEGFRPIVTVRRDEQIALLKD 207
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 36.4 bits (85), Expect = 0.014
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQE 140
+ V SG+ AI+ AK GA V A E KL +A+
Sbjct: 169 DVLVMAAGSGVS-VAAIQIAKLFGARVIATAGSEDKLRRAKA 209
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 36.4 bits (85), Expect = 0.015
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 103 VTGGSSGIGKHVAIEAAK-RGAHVTIVARDEK 133
+ G+ G+G H+AI+ AK +G V A
Sbjct: 158 IHAGAGGVG-HLAIQLAKQKGTTVITTASKRN 188
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 36.5 bits (85), Expect = 0.016
Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 98/264 (37%)
Query: 77 GVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLL 136
G+ P +K Y V G + +G H A G + ++ R ++
Sbjct: 1 GMDEQPLSRPGAHVK-YA--------VLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI- 50
Query: 137 QAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMD 196
+ + Y E E ++ D+ L+ A+
Sbjct: 51 ----------------QRLAYLE-------------PECRVAEML-DHA----GLERALR 76
Query: 197 RCGPVYMLVNCAGMALCGTLEEMTMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLNLYGT 256
V AG P R + + L
Sbjct: 77 GLDGVI---FSAGYY------------------PSRPRRWQ---------EEVASALGQ- 105
Query: 257 IHMTKALVEGMKQRGRGCIVITASQAA----------------NLGIYGLAAYTSSKFAL 300
T Q I+ S A + G ++Y K+A
Sbjct: 106 ---TNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWA- 161
Query: 301 KGFAEALYMEVKQSGLTITLCLPP 324
+ E ++GL + + +P
Sbjct: 162 ---LDEQAREQARNGLPVVIGIPG 182
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 35.7 bits (82), Expect = 0.022
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACP 165
G +G VA + A GA V + AR+ L + E + + +
Sbjct: 162 GLGRVGMSVARKFAALGAKVKVGARESDLLARIAEM---------GMEPFHISKAAQELR 212
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 36.0 bits (82), Expect = 0.028
Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 9/113 (7%)
Query: 36 HLQMKRYLAPTNGTLSVDGAAGSFKN------FKSSEPRTNLEPPCRGVRTVASREPHLQ 89
M R P GT S AAG + F ++ + + T+ +
Sbjct: 194 FNAMARMTRP-GGTFSTFTAAGFVRRGLQQAGFNVTKVKGFGQKREMLTGTLPQQIHAPT 252
Query: 90 MKRYLAPTNGTLS--VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQE 140
Y P G + A+ +RGA VT+ D + A
Sbjct: 253 APWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASG 305
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 35.3 bits (82), Expect = 0.031
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 97 TNGTLSVTGGSSGIGKHVAIEAAKRG--AHVTIVARDEKKLLQAQEEIKKACPNPKFIRF 154
N T+ +TGG+ GK + + + +RDE K Q E+ +P+ +RF
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELK----QSEMAMEFNDPR-MRF 74
Query: 155 I-----EYEEIKKACPNPKFI 170
+ E + A
Sbjct: 75 FIGDVRDLERLNYALEGVDIC 95
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 34.7 bits (80), Expect = 0.051
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 103 VTGGSSGIGKHVAIEAAK-RGAHVTIVARDEK 133
+ G S G+G AI+ K AHVT V +
Sbjct: 189 ILGASGGVG-TFAIQVMKAWDAHVTAVCSQDA 219
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 34.3 bits (79), Expect = 0.059
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 90 MKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKA 145
MKR L VTG + +G+ + A + + EE +
Sbjct: 3 MKRLL--------VTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQC 50
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 34.5 bits (80), Expect = 0.059
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQE 140
L V S IG H+ + ++ + V R+ K +
Sbjct: 147 VLLVNACGSAIG-HLFAQLSQILNFRLIAVTRNNKHTEELLR 187
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 34.5 bits (80), Expect = 0.061
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQE 140
T+ V G + GIG AI+ AK GA V V +
Sbjct: 162 TVLVLGAAGGIGTA-AIQIAKGMGAKVIAVVNRTAATEFVKS 202
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 34.3 bits (79), Expect = 0.085
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 96 PTNGTLSVTGGSSGIGKHVAIEAAKRGA-HVTIVAR 130
P +G++ VTGG+ GIG VA A++GA H+ + +R
Sbjct: 237 PVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSR 272
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 34.0 bits (78), Expect = 0.096
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 110 IGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPN 166
G +A A GA+V + AR L + E + +E+K+ +
Sbjct: 168 TGMTIARTFAALGANVKVGARSSAHLARITEM---------GLVPFHTDELKEHVKD 215
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.7 bits (77), Expect = 0.11
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVA--RDEKKL 135
VTG S G+ V + + R +
Sbjct: 9 VTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK 43
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 33.1 bits (75), Expect = 0.14
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 103 VTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
+ G + I + + H+T+ R K + +
Sbjct: 10 ILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI 48
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.2 bits (75), Expect = 0.14
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 120 KRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLD 179
G + + E K + K P P IR + E+ K ++ L
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAKVP-P-LIRIVSGLELSDTKQKGK-----KF--LV 165
Query: 180 ISKD-YENI 187
I+ + +ENI
Sbjct: 166 IAYEPFENI 174
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 32.9 bits (74), Expect = 0.17
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNP 149
+++ GG+ +GK +A+ A G + + +R E+K E ++ +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDA 51
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 33.0 bits (76), Expect = 0.20
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 18/66 (27%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHV-TIVARDEK-KLLQA--------------QEEI 142
+ VT + G G A++ +K HV + DEK L++ +
Sbjct: 166 KVLVTAAAGGTG-QFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVL 224
Query: 143 KKACPN 148
K+ P
Sbjct: 225 KQEYPE 230
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.5 bits (72), Expect = 0.23
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 110 IGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKA 145
G + E + G V V +E+K+ A
Sbjct: 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA 52
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.0 bits (75), Expect = 0.25
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 99 GTLSVTGGSSGIGK-----HVAIEAAKRGAHVTIVARDE 132
++ + G++G GK A + A +E
Sbjct: 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 32.8 bits (75), Expect = 0.26
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 28/141 (19%)
Query: 88 LQMKRYLAPTNGTLSVTGGSSGIGKHVAIE-AAKRGA-HVTIVARDEKKLLQAQEEIKKA 145
L M GT+ VTGG+ +G VA +RG ++ +V+R A E
Sbjct: 521 LTMPPVWDA-AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAE----- 574
Query: 146 CPNPKFIRFIEYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLV 205
+ + + + + D++ D E + L ++ P+ +V
Sbjct: 575 -----LVAQLTAYGAE-----------VSLQACDVA-DRETLAKVLA-SIPDEHPLTAVV 616
Query: 206 NCAGMALC-GTLEEMTMQDIK 225
+ A L G E +T++ +
Sbjct: 617 HAA-GVLDDGVSESLTVERLD 636
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.5 bits (75), Expect = 0.34
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 34/82 (41%)
Query: 105 GGSSGIGKHVAIEAAKRGAHVTIVARDEK--KLLQAQEEIKK-------------ACPNP 149
GG SG+ AI AA+ GA+V ++ +K KL +K P
Sbjct: 34 GGPSGL--MAAIGAAEEGANVLLL---DKGNKLG------RKLAISGGGRCNVTNRLPLD 82
Query: 150 KFIRFIEYEEIKKACPNPKFIR 171
+ ++ I N +F+
Sbjct: 83 EIVKHI--------PGNGRFLY 96
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 31.9 bits (73), Expect = 0.35
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 90 MKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIV 128
+ R L VTG + G+G + V +
Sbjct: 2 LNRLL--------VTGAAGGVGSAIRPHLGTLAHEVRLS 32
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 32.2 bits (74), Expect = 0.36
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
++ + GG+SGIG AI+ A+ GA V A K +
Sbjct: 170 SVLIHGGTSGIGTT-AIQLARAFGAEVYATAGSTGKCEACER 210
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 31.6 bits (72), Expect = 0.38
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 105 GGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKF 151
G +G V +E A R V + R+ + + + +++
Sbjct: 41 GCGTGG---VTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNV 84
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 32.0 bits (73), Expect = 0.43
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 97 TNGTLSVTGGSSGIGKHVAIEAAKRGA-HVTIVAR 130
GT+ VTGG+ G+G +A A+RGA H+ +V+R
Sbjct: 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR 259
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 32.0 bits (73), Expect = 0.43
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKA 163
G+ G GK +A A ++GA V I R ++ E+ +A K + + +
Sbjct: 371 GAGGAGKALAYGAKEKGAKVVIANRTYERA----LELAEAIGG-KALSLTDLDNYHPE 423
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 32.1 bits (73), Expect = 0.44
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 99 GTLSVTGGSSGIGKHVAIEAAKRGA-HVTIVAR 130
GT+ VTG A A+ GA H+ +
Sbjct: 252 GTVLVTGAEEPAAAEAARRLARDGAGHLLLHTT 284
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.8 bits (72), Expect = 0.44
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDE 132
+ G + IG+HVA + G ++ R+
Sbjct: 9 LIGATGYIGRHVAKASLDLGHPTFLLVRES 38
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.2 bits (73), Expect = 0.44
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 72 EPPCRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGA-HVTIVAR 130
E R + K + P + + +TGG G G +A RGA + + +R
Sbjct: 1859 EEQGPAPRGLPPIALTGLSKTFCPP-HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSR 1917
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 31.4 bits (72), Expect = 0.53
Identities = 4/42 (9%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
++ V G+G+ + K ++
Sbjct: 145 SVLVHSAGGGVGQA-VAQLCSTVPNVTVFGTASTFKHEAIKD 185
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 31.8 bits (73), Expect = 0.54
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 24/134 (17%)
Query: 14 EASRAQTWSRRAAAYEQSRAEPHLQMK--------RYLAPTNG-TLSVDG---AAGSFKN 61
E + + R A +E E L + + +G + A G
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGG--- 117
Query: 62 FKSSEPRT--NLEPPCRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSG-IGKHVAIEA 118
+PR + GV V ++E ++ L V GG G IG A
Sbjct: 118 ----DPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGG--GYIGLEAAAVL 171
Query: 119 AKRGAHVTIVARDE 132
K G +VT++
Sbjct: 172 TKFGVNVTLLEALP 185
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 31.4 bits (72), Expect = 0.54
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 103 VTGGSSGIGKHVAIEAAK--RGAHVTIVARDEKKLLQAQE 140
V G G+G +A++ AK GA + V E+ + A+
Sbjct: 176 VVGAGGGLG-TMAVQIAKAVSGATIIGVDVREEAVEAAKR 214
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 31.4 bits (72), Expect = 0.55
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQE 140
++ V G S G+G A + A+ G + A E+ +
Sbjct: 173 SVLVHGASGGVG-LAACQIARAYGLKILGTAGTEEGQKIVLQ 213
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 31.7 bits (72), Expect = 0.58
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 76 RGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGA-HVTIVAR 130
R R A+ Q P+ L +TGG IG+ +A A GA + + +R
Sbjct: 244 RVSRAAAAGAASWQ------PSGTVL-ITGGMGAIGRRLARRLAAEGAERLVLTSR 292
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 31.4 bits (72), Expect = 0.59
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
+ + G SG+G AI+ + GA + A +KKL A++
Sbjct: 165 YVLIHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEK 205
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
flavoprotein, structural genomics protein structure
initiative; 1.83A {Streptococcus pneumoniae}
Length = 232
Score = 31.1 bits (71), Expect = 0.65
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 107 SSG-IGKHVAIEAAKRGAHVTIVA 129
S+G +GK + G V ++
Sbjct: 27 STGHLGKIITETLLSAGYEVCLIT 50
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 31.4 bits (71), Expect = 0.66
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
+ GG+ IG H+ + K G + R +E + E+E++ +
Sbjct: 16 IFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVE 75
Query: 163 AC 164
Sbjct: 76 LM 77
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 31.1 bits (71), Expect = 0.71
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAH-VTIVARDEKKL 135
+TG + +G H+ +A I R+ +K+
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV 38
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 31.2 bits (70), Expect = 0.72
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 110 IGKHVAIEAAKRGAHVTIVARD 131
IG A+ A++G V I+ARD
Sbjct: 17 IGLSSALILARKGYSVHILARD 38
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 31.1 bits (70), Expect = 0.77
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDE 132
+ GG+ IGK + + G ++ R E
Sbjct: 9 IVGGTGYIGKRIVNASISLGHPTYVLFRPE 38
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 30.7 bits (70), Expect = 0.82
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKRGAHVTIVA--RDEKKL 135
+++VTG + +G V K+ I+A R+ +K
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA 39
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.8 bits (70), Expect = 0.92
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 94 LAPTNGTLSVTGGSSGIGKHVAIEAAK-RGAHVTIVARDEKKLLQAQEEIKKA 145
L P GG+S +GK A + K + V RD L + +K+
Sbjct: 164 LTPGKDWFIQNGGTSAVGK-YASQIGKLLNFNSISVIRDRPNLDEVVASLKEL 215
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 30.8 bits (69), Expect = 1.0
Identities = 38/282 (13%), Positives = 75/282 (26%), Gaps = 44/282 (15%)
Query: 103 VTGGSSGIGKHVAIEAA-KRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIK 161
V G S+G G I AA GA V + + + + +
Sbjct: 52 VIGASTGYGLAARITAAFGCGADTLGVFFER-------PGEEGKPGTSGWYNSAAFHKFA 104
Query: 162 KACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGTLE--EM 219
+ + ++ D D E + + G V ++ + E+
Sbjct: 105 AQKG-----LYAKSINGDAFSD-EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEV 158
Query: 220 TMQDIKVMEQPLWLRGYHTRLALWRSWTVIDLN---LYGTIH-MTKALVE----GMKQRG 271
+K + + LRG T + + + + T+ M + + G
Sbjct: 159 FNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAG 218
Query: 272 ---RGCIVITASQAAN---LGIYGLAAYTSSKFALKGFAEALYME----------VKQSG 315
G + IY + ++K L A+ V
Sbjct: 219 VLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLK 278
Query: 316 LTITLCLPPDTDTPGFENEEKSKPRETSL----ISQTGGLYR 353
++ P + + +E I Q LY+
Sbjct: 279 AVVSQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYK 320
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 30.6 bits (70), Expect = 1.1
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 88 LQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVA 129
R LA G G SSG A+ A +VA
Sbjct: 238 ENTMRELAVREGIFC--GVSSGGAVAGALRVAAANPDAVVVA 277
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 30.4 bits (68), Expect = 1.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 109 GIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYE 158
G G +I + G VT V +K L A +E P F +++ E
Sbjct: 67 GTGVD-SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 115
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 30.4 bits (68), Expect = 1.1
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIK 143
+ G + IG+ VA + I+AR + + K
Sbjct: 15 IAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFK 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.2
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 32/62 (51%)
Query: 156 EYEEIKKACPNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCAGMALCGT 215
E + +KK ++ SL K Y + SA PA +A+ T
Sbjct: 18 EKQALKK----------LQ-ASL---KLYAD-DSA--PA---------------LAIKAT 45
Query: 216 LE 217
+E
Sbjct: 46 ME 47
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 30.3 bits (69), Expect = 1.2
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 105 GGSSGIGKHVAIEAAK-RGAHVTIVARDEKK 134
G + ++ + G V +V+ +
Sbjct: 149 VGFGAVN-NLLTQMLNNAGYVVDLVSASLSQ 178
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.5 bits (67), Expect = 1.5
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 108 SGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKK-ACPNPKFIR 153
G G + +E AKR V + + + ++ + K N + I+
Sbjct: 44 CGSGG-MTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 30.5 bits (69), Expect = 1.5
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 88 LQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIV 128
+ + T+ + VTGG+ IG H +E + G +
Sbjct: 1 MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVA 41
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 29.9 bits (68), Expect = 1.6
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 96 PTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKK 134
P + VTG + + HV + + G V AR K
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKK 162
V GG G A+ +K+ V IV D L++ + + + I I +
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIV--D--NLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 163 ACPNPKFIRFIEYVSLDISKDYENIRSALQ 192
K I DI D+E + + +
Sbjct: 72 KALTGKSIELYV---GDI-CDFEFLAESFK 97
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 2.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 110 IGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKA 145
G + E G V V + ++K+ ++E A
Sbjct: 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA 52
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.5 bits (66), Expect = 2.1
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDE 132
+ G + IG+H+ + K G + R
Sbjct: 7 ILGPTGAIGRHIVWASIKAGNPTYALVRKT 36
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 105 GGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKK 144
GG + ++A R V I+ +D + + +++K
Sbjct: 7 GGET-TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKA 45
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 106 GSSGIGKHVAIEAAKRGA-HVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKAC 164
G+ G+G VA G + + D + + I A + ++ I+
Sbjct: 134 GAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREA-VVGVDARGIEDVI 192
Query: 165 PN 166
Sbjct: 193 AA 194
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 29.1 bits (65), Expect = 2.4
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 109 GIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFI 152
G+G + G V V E + +A+E K N +FI
Sbjct: 48 GVG-GFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFI 90
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 90 MKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKK 144
++ T + + G SG + + A ++ I + L A++ +
Sbjct: 41 LQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCEN 95
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 29.3 bits (65), Expect = 2.4
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 108 SGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFI 152
+GIG+ K A ++ + L +A+ E+ P KFI
Sbjct: 102 AGIGRITKNLLTKLYATTDLLEPVKHMLEEAKREL-AGMPVGKFI 145
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 2.4
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 25/86 (29%)
Query: 105 GGSSGIGKHVAIEAAKRGAHVTIVARDEK---KLL-----------QAQEEIKKACPNPK 150
G++G+ A + AK G VT+ +K K+L NP
Sbjct: 12 AGAAGL--FCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPH 69
Query: 151 FIR--FIEYEEIKKACPNPKFIRFIE 174
F++ Y N FI +
Sbjct: 70 FVKSALARY-------TNWDFISLVA 88
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.5 bits (67), Expect = 2.5
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 86 PHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIV 128
MK+ +TG IG H+A +RG V +
Sbjct: 17 RGSHMKKVF--------ITGICGQIGSHIAELLLERGDKVVGI 51
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 29.3 bits (66), Expect = 2.6
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 250 DLNLYGTIHMTKALVEGMKQRGRGCIVITASQAANLGIYG 289
+NL GT ++ A+ + G V+ S A ++G
Sbjct: 110 RINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA---VFG 146
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.3 bits (65), Expect = 2.6
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKACP 165
G+ +G+ +A A G VTI RD K L E A P F +++
Sbjct: 26 GTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPD--AMGAPPFSQWLPEHPHVHLAA 83
Query: 166 NPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCA 208
E V + + + +AL A +LV+ A
Sbjct: 84 FADVAAGAELVVN--ATEGASSIAALTAAGAENLAGKILVDIA 124
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.5 bits (66), Expect = 2.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 103 VTGGSSG-IGKHVAIEAAKRGAH-VTIVARDEKKLLQAQEEIKKACPNPKFI 152
+TG G +GK++ + H + V R K +EE++ A FI
Sbjct: 5 ITGAK-GFVGKNLKADLTSTTDHHIFEVHRQTK-----EEELESALLKADFI 50
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 29.2 bits (66), Expect = 3.0
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEK----KLLQAQEEIKKACPNPKFIRFI--- 155
+ GG+SG+ AI+ A HVT++ + ++LQ K + I
Sbjct: 361 IGGGNSGVEA--AIDLAGIVEHVTLLEFAPEMKADQVLQ-----DKVRSLKN-VDIILNA 412
Query: 156 EYEEIK 161
+ E+K
Sbjct: 413 QTTEVK 418
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 29.1 bits (66), Expect = 3.1
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 89 QMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIV-----ARDEKKLLQAQEEIK 143
++ + L + T +TG + IG ++ + K V + L + +
Sbjct: 16 EITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYN--LDEVKTLV 73
Query: 144 KACPNPKFIRFIE-----YEEIKKACPNPKFI 170
+F FIE ++ +
Sbjct: 74 STEQWSRF-CFIEGDIRDLTTCEQVMKGVDHV 104
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET:
PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB:
1u7w_A* 1u7u_A* 1u80_A*
Length = 226
Score = 28.6 bits (65), Expect = 3.2
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 107 SSG-IGKHVAIEAAKRGAHVTIVA 129
SSG +G +A AA+RGA+VT+V+
Sbjct: 32 SSGKMGFAIAAAAARRGANVTLVS 55
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 29.1 bits (65), Expect = 3.4
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 100 TLSVTGGSSGIGKHVAIEAAKRGAHV-TIVARDEK 133
L T +S +G+ + K G + IV + E+
Sbjct: 174 ALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQ 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.8 bits (65), Expect = 3.4
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 99 GTLSVTGGSSGIGK-----HVAIEAAKRGAHVTIVARDE 132
G G G GK H + + G V +E
Sbjct: 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 29.1 bits (65), Expect = 3.4
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKK 134
+ GG+ IGK + + I AR
Sbjct: 9 IYGGTGYIGKFMVRASLSFSHPTFIYARPLTP 40
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Length = 119
Score = 27.5 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 147 PNPKFIRFIEYEEIKKACP---------NPKFIRF----IEYV 176
P P F+ E+ +IK CP N +FI + +EYV
Sbjct: 46 PQPAFLEAPEFADIKAKCPQPAAAIISTNSQFITWLKLRLEYV 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 28.8 bits (64), Expect = 3.8
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 109 GIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIR 153
G G++ ++ + G VT +E + E +K N
Sbjct: 130 GQGRN-SLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTAL 173
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 28.6 bits (65), Expect = 3.8
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACP 147
G+ G + V K GA V + R ++K ++ + P
Sbjct: 136 GAGGASRAVIYALVKEGAKVFLWNRTKEKA----IKLAQKFP 173
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.0 bits (66), Expect = 3.9
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 105 GGSSGIGKHVAIEAAKRGAHVTIVARDE---KKLL 136
G++G+ AIEA KRG V ++ +K+
Sbjct: 35 AGAAGM--MCAIEAGKRGRRVLVIDHARAPGEKIR 67
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799,
streptococcus pneumonia PSI, protein structure
initiative; 1.65A {Streptococcus pneumoniae} SCOP:
c.124.1.8
Length = 266
Score = 28.6 bits (64), Expect = 3.9
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 107 SSGIGKHVAIEAAKRGAHVTIVARDE---KKLLQAQEEI 142
+ G K +I + R V + D+ K+L+ ++
Sbjct: 228 AYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGDL 266
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 28.9 bits (65), Expect = 4.0
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 77 GVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLL 136
G A L+ ++Y N +S+TG I H+A G +V D KK
Sbjct: 8 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIAS--DWKKN- 64
Query: 137 QAQEEIKKACPNPKFI 152
E + + +F
Sbjct: 65 ---EHMTEDMFCDEFH 77
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 90 MKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIV 128
M + L +TGG +G ++A A +G + +
Sbjct: 1 MAKLL--------ITGGCGFLGSNLASFALSQGIDLIVF 31
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 28.6 bits (65), Expect = 4.4
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKA 163
G+ G G+ VA + G V + R ++ + + +R + E+ ++A
Sbjct: 123 GAGGAGRAVAFALREAGLEVWVWNRTPQRA----LALAEEFG----LRAVPLEKAREA 172
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 28.7 bits (64), Expect = 4.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 107 SSGIGKHVAIEAAKRGAHVTIVARDE---KKLLQAQEE 141
+S K ++I A R + ++A LL E
Sbjct: 228 ASESRKALSIMGALRTGVIDVLATSVSCAMALLNLAEN 265
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 28.7 bits (65), Expect = 4.6
Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 33/109 (30%)
Query: 106 GSSGIGKHVAIEAAKRGA-HVTIVARDEKKLLQAQEEIKKACPNPKFIRFIEYEEIKKAC 164
G+ G + +AA G + + R + +A K+
Sbjct: 155 GAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV------------------- 195
Query: 165 PNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNC--AGMA 211
N + L D AL A +L N GM
Sbjct: 196 -NENTDCVVTVTDLA---DQHAFTEALASAD-------ILTNGTKVGMK 233
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 28.4 bits (64), Expect = 4.7
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 109 GIGKHV---AIEAAKRGAHVTIVARD 131
G+ + A A RG HV + +
Sbjct: 15 GLQRDFMRIASTVAARGHHVRVYTQS 40
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 28.4 bits (64), Expect = 4.8
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIE-----Y 157
VTG S IG + A++ ++A D + + I+FI
Sbjct: 4 VTGSSGQIGTELVPYLAEKYGKKNVIASDIVQ------------RDTGGIKFITLDVSNR 51
Query: 158 EEIKKACPNPKF 169
+EI +A
Sbjct: 52 DEIDRAVEKYSI 63
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 28.7 bits (65), Expect = 4.8
Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 28/137 (20%)
Query: 14 EASRAQTWSRRAAAYEQSRAEPHLQMK--------RYLAPTNG-TLSVDG---AAGSFKN 61
+A+ + R AY + + + + ++G L D A G
Sbjct: 56 KATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG--- 112
Query: 62 FKSSEPRT-----NLEPPCRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSG-IGKHVA 115
PR R + + E ++R L + L V GG G IG VA
Sbjct: 113 ----RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIA-DNRLVVIGG--GYIGLEVA 165
Query: 116 IEAAKRGAHVTIVARDE 132
A K HVT++
Sbjct: 166 ATAIKANMHVTLLDTAA 182
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 28.2 bits (63), Expect = 4.9
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 81 VASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGA--HVTIVARDEKKLLQA 138
+A E +++ N ++ + G S G+ + E ++G VT++ R +KL
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR--RKLTFD 58
Query: 139 QEEIKKACPNPKFIRFIEYEEIKKACPNP 167
+E K N + + F + ++ A
Sbjct: 59 EEAYKNV--NQEVVDFEKLDDYASAFQGH 85
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 28.5 bits (64), Expect = 5.0
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 67 PRTNLEPP--CRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKRGAH 124
P + L R + + + + + T+++TG +G+ + + G
Sbjct: 114 PASTLTGMFAYRQTQLIEDLKFLSRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHE 173
Query: 125 VTIVARDEKK 134
V + R E K
Sbjct: 174 VIQLVRKEPK 183
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 28.7 bits (63), Expect = 5.0
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKA 145
GS + + G VT+ R + + ++ +
Sbjct: 10 GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHS 49
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.8 bits (63), Expect = 5.1
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 106 GSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKK 144
GS +G +EAA G +V +D + A +K+
Sbjct: 51 GSGAVG----LEAASEGWEAVLVEKDPE----AVRLLKE 81
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 28.6 bits (65), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV 128
VTGG+ IG H +E + G ++
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVI 32
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 28.3 bits (63), Expect = 5.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 111 GKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIR 153
K VA++ K H T A DE +LL++ PN + +
Sbjct: 62 KKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVV 104
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 28.3 bits (63), Expect = 5.5
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 95 APTNGTLSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKK 134
A T++V G + G + AA G HV K
Sbjct: 2 AQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG 41
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 28.3 bits (64), Expect = 5.5
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 78 VRTVASREPHLQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKR----GAHVTIVA 129
+V + + ++ R L T G + G S+G H A+ G I
Sbjct: 241 RYSVGAVDA-VRRTRELVHTEGIFA--GISTGAVLHAALGVGAGALAAGERADIAL 293
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 28.3 bits (64), Expect = 5.5
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 106 GSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
G+ G+ ++ AK GA V + + +KL +A
Sbjct: 197 GTGGVA-LFGLQIAKATGAEVIVTSSSREKLDRAFA 231
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 28.3 bits (64), Expect = 5.8
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 103 VTGGSSGIGKHVAIEAAKR-GAHVTIVARDEKKLLQAQE 140
++G + G+G +A++ AK G V + E K +
Sbjct: 175 ISGAAGGLG-SLAVQYAKAMGYRVLGIDGGEGKEELFRS 212
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 28.2 bits (62), Expect = 6.5
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 76 RGVRTVASREPHLQMKRYLAPTNGTLSVTGGS-SGIGKHVAIEAAKRGAHVTIVARDEKK 134
RG ++ + + G + GS SG +A V +
Sbjct: 84 RGTAITFPKDI-NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 142
Query: 135 LLQAQEEIKKACPNPKFIRFIEYEE 159
A++ K + K E+ +
Sbjct: 143 HDLAKKNYKHWRDSWKLSHVEEWPD 167
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 27.9 bits (62), Expect = 6.6
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 109 GIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIR 153
G G++ A A G VT V + L +A++ ++ ++
Sbjct: 39 GEGRN-ACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQ 82
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.9 bits (62), Expect = 6.7
Identities = 4/45 (8%), Positives = 13/45 (28%)
Query: 109 GIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIR 153
G + G + + +L +A+ ++ +
Sbjct: 33 GGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISK 77
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 28.2 bits (64), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV 128
VTGGS IG H ++ + G V I+
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVIIL 30
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 27.8 bits (62), Expect = 7.0
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 23/137 (16%)
Query: 104 TGGSSGIGKHVAIEAAKRGAHVTIVARDEKKLLQAQEEIKKACPNPKFIRFIE------- 156
TG +S + AA GA VT V +K + A+E A IR+I
Sbjct: 164 TGVAS-------LVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 216
Query: 157 YEEIKKAC--------PNPKFIRFIEYVSLDISKDYENIRSALQPAMDRCGPVYMLVNCA 208
E ++ P PKF R + + + + +L +
Sbjct: 217 QREERRGSTYDIILTDP-PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275
Query: 209 GMALCGTLEEMTMQDIK 225
A ++ E+ + ++
Sbjct: 276 IRASFYSMHELMRETMR 292
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 27.9 bits (63), Expect = 7.5
Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 17/61 (27%)
Query: 101 LSVTGGSSGIGKHVAIEAAKRGAHVTIVARDE------------KKLL----QAQEEIKK 144
L V G SG G A A G V I KKL Q +E K
Sbjct: 29 LFVIGSGSG-GVRAARLAGALGKRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSK 87
Query: 145 A 145
+
Sbjct: 88 S 88
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 27.6 bits (62), Expect = 7.5
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 103 VTGGSSGIGKHVAIEAAKR--GAHVTIVARDEKKL 135
+TG + +G +V K + + + R+ K
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA 38
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 28.1 bits (63), Expect = 7.6
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 88 LQMKRYLAPTNGTLSVTGGSSGIGKHVAIEAAKR-GAHVTIVA 129
M R L G L GGSSG H A+E A++ V
Sbjct: 306 FPMSRRLNAEEGLLC--GGSSGGAMHAALEHARKLKKGQRCVV 346
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 27.8 bits (63), Expect = 7.8
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 101 LSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
L V GG SG G AA G V I +E +
Sbjct: 8 LFVIGGGSG-GVRSGRLAAALGKKVAIA--EEFRY 39
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 27.9 bits (63), Expect = 8.0
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 95 APTNGT----LSVTGGSSGIGKHVAIEAAKRGAHVTIV 128
AP G+ L V GG S G A EA GA V +
Sbjct: 2 APVQGSYDYDLIVIGGGSA-GLACAKEAVLNGARVACL 38
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 27.8 bits (63), Expect = 8.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 103 VTGGSSGIGKHVAIEAAKRGAHVTIV 128
VTGG+ IG H A+E G V I
Sbjct: 10 VTGGAGYIGSHTAVELLAHGYDVVIA 35
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 27.7 bits (62), Expect = 8.1
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 99 GTLSVTGGSSGIGK-----HVAIEAAKRGAHVTIVARDE 132
+ + G G GK K G VA +E
Sbjct: 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 27.9 bits (63), Expect = 9.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 101 LSVTGGSSGIGKHVAIEAAKRGAHVTIVARDEKKL 135
L GG SG G VA +AA G V ++ + K L
Sbjct: 7 LIAIGGGSG-GLAVAEKAAAFGKRVALI--ESKAL 38
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 27.5 bits (62), Expect = 9.3
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 65 SEPRT--NLEPPCRGVRTVASREPHLQMKRYLAPTNGTLSVTGGSSG-IGKHVAIEAAKR 121
+ PR L+ V T+ + E +++ L P L + GG G IG +A A
Sbjct: 111 AAPRALPTLQGATMPVHTLRTLEDARRIQAGLRP-QSRLLIVGG--GVIGLELAATARTA 167
Query: 122 GAHVTIVARDE 132
G HV++V
Sbjct: 168 GVHVSLVETQP 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,218,061
Number of extensions: 433447
Number of successful extensions: 2064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 424
Length of query: 475
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 378
Effective length of database: 3,993,456
Effective search space: 1509526368
Effective search space used: 1509526368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)