Query psy3256
Match_columns 512
No_of_seqs 217 out of 642
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:25:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2514|consensus 100.0 7E-103 2E-107 847.6 25.8 444 43-502 121-567 (861)
2 PF04547 Anoctamin: Calcium-ac 100.0 8.4E-68 1.8E-72 568.0 26.0 278 150-500 1-278 (452)
3 KOG2513|consensus 100.0 7.1E-63 1.5E-67 522.8 26.2 351 42-493 51-412 (647)
4 KOG2514|consensus 99.5 5.1E-16 1.1E-20 171.0 -8.5 374 63-487 244-635 (861)
5 PF02714 DUF221: Domain of unk 97.2 0.0043 9.3E-08 64.1 13.3 58 367-424 101-158 (325)
6 COG5594 Uncharacterized integr 79.6 6.2 0.00013 45.6 8.0 57 364-424 462-518 (827)
7 KOG1134|consensus 78.0 26 0.00057 40.7 12.6 55 366-424 410-464 (728)
8 PF02532 PsbI: Photosystem II 76.6 8 0.00017 27.1 4.8 32 409-440 2-33 (36)
9 PRK02655 psbI photosystem II r 47.3 4.4 9.6E-05 28.6 -0.7 31 409-439 2-32 (38)
10 CHL00024 psbI photosystem II p 45.7 4.8 0.0001 28.2 -0.7 31 409-439 2-32 (36)
11 COG1377 FlhB Flagellar biosynt 41.3 2.4E+02 0.0052 30.2 10.5 20 370-389 195-214 (363)
12 PRK00968 tetrahydromethanopter 24.6 99 0.0022 30.5 4.1 25 301-325 200-225 (240)
13 PF10766 DUF2592: Protein of u 23.3 2.8E+02 0.0061 20.1 5.0 22 320-341 3-24 (41)
14 PF08566 Pam17: Mitochondrial 20.4 52 0.0011 31.4 1.2 20 149-172 140-159 (173)
15 PF05478 Prominin: Prominin; 20.1 4.5E+02 0.0097 31.1 9.1 37 145-182 60-103 (806)
No 1
>KOG2514|consensus
Probab=100.00 E-value=7.3e-103 Score=847.58 Aligned_cols=444 Identities=46% Similarity=0.831 Sum_probs=416.8
Q ss_pred CCCCceeeccccccccccc-cCCCCCCChHHHHHHHHHHHhcCCccccCCCccccccccccccCceEEeeeCCCCCCCCC
Q psy3256 43 MKKLPLTAQYTKAKHYLFD-EENSDFLSPPSRSLIIDFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDGDWATG 121 (512)
Q Consensus 43 ~~~~~~~~~F~~~k~~~F~-~~~~~fFt~aeR~rIv~~iL~~~~~~~~~~~~~~~gI~~L~~~gv~~a~fPLHD~~~~~~ 121 (512)
..++-|+++++|.+.++|. .+++++|+.++|+++|+.++.|+.+.++ ...+||.+|++.|+|.++|||||+++...
T Consensus 121 ~~~~~f~~~~sr~~~~~f~~k~~~~~f~~a~rs~~ve~~l~rt~~~~~---~~~~gi~~l~~~~~y~aa~plh~g~~~~~ 197 (861)
T KOG2514|consen 121 EDEKSFTASSSRGKEYQFIIKIDDTFFTKAERSRIVEPILPRTSFIEQ---LRRKGIRRLIASGVYEAAFPLHDGEYKAM 197 (861)
T ss_pred cccccccccccCcceEEEEEecCchhhhhhhhhhhchhhcccccchhh---hhhhchHHHHhhcceeeeeeccccCcccc
Confidence 4578899999999999999 8899999999999999999999998643 37899999999999999999999998332
Q ss_pred CCCcchhHHHHHHhhcccccccCCChhHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhc
Q psy3256 122 DPEKSLRYSLYKEWAHLRNWIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICN 201 (512)
Q Consensus 122 ~~~~n~R~~L~~~Wa~~~~~~~~QPld~Ir~YFGEkIalYFAwLgfYT~~Li~~ai~Gl~~fl~g~~~~~~~~~~~eic~ 201 (512)
....++|..|++.|+++.+|+++||+|.||+|||||||+||||+|+||.+|+|+|++|++||+||+++..++++++|+|+
T Consensus 198 ~~~~~~r~~lyq~wa~~~~wyk~qpl~~ir~yfg~ki~lyfawlg~yt~~l~~~ai~glivf~yg~~~~~~~~~~~~~c~ 277 (861)
T KOG2514|consen 198 QGGSVDRYLLYQLWANWERWYKFQPLDLIRKYFGEKIALYFAWLGTYTTMLWPASIVGLIVFIYGLATLENAPPSKEICK 277 (861)
T ss_pred cccchhHHHHHhcccccCcccccChHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchHHHHh
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCCcCCCCccccccccchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCccccccccCC
Q psy3256 202 KTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPR 281 (512)
Q Consensus 202 ~~~~~~mcP~cd~~c~~w~l~~~c~~~~~~~lfdn~~tv~faifm~lWat~FlE~WKR~~a~la~~Wg~~~~~~~~e~~R 281 (512)
.+.+.+|||+|| .|.||+|+++|.+++++|||||+.|++||+||++|+++|+|+|||+++.+.|+||..+++++||..+
T Consensus 278 ~~~~~t~cplcd-~c~~~~l~~sc~~~~~~~lfdn~~tvffavfms~wat~f~e~wkr~~~vl~~~wdl~~~~~~ee~~~ 356 (861)
T KOG2514|consen 278 VFTNITMCPLCD-MCNYWRLSESCVTAKVTYLFDNPSTVFFAVFMSIWATVFLELWKRKQSVLTYRWDLTGFEEEEEDRP 356 (861)
T ss_pred hcCcEEeccccc-cccceehHHHHHhhHHHHHhccchHHHHHHHHHHhHHHHHHHHHhhheeeeeeeccccccccccccc
Confidence 766999999999 9999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred CcchhhcccccccceeecCCCC-ceeecCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3256 282 PSYLARLSHLKRTKTIMNIITG-TEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMN 360 (512)
Q Consensus 282 p~f~~~~~~~~~~~~~~npvTg-~~e~~~p~~~r~~r~~~s~~vv~~~i~l~i~~v~~vi~~r~~~~~~~~~~~~~~~~~ 360 (512)
++|++++ ..+++|+ +.+++.|.+.|.++++++.+.|++|+++++++++||++||+.+..++... +..+
T Consensus 357 ~~~~~~~--------~~~~~~~~~~~~~~~~~~r~~~~l~~~~~v~f~iav~~~~~l~V~lyri~~~~a~~~~---~~~~ 425 (861)
T KOG2514|consen 357 EQFEAKY--------ETDPITNEEDEPISPWRDRYIAMLASFSFVLFMIAVVFSAVLGVILYRISMVAALQCG---KFTT 425 (861)
T ss_pred hhhhhhh--------eeecccCCCCcccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ccce
Confidence 7888876 4488887 67788888889999999999999999999999999999999998887754 3377
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCC
Q psy3256 361 SYGIVIIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPA 440 (512)
Q Consensus 361 ~~~~~~~~~~~~iln~v~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~slfYiAF~~~~f~g~pg 440 (512)
++....++.+++++|+++|++||.+|.++|.+||++|||||+++||||+++|+|+|||||+|+|+||||||+|+|+|+||
T Consensus 426 ~~~~~~at~~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~yssifYVAFfkg~fvg~pg 505 (861)
T KOG2514|consen 426 SHAWLSATATAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYSSIFYIAFFKGRFVGYPG 505 (861)
T ss_pred ehhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcCceEEEEEEeceeccCCC
Confidence 77888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcc-ccccccCCCCchHHHHHHHHHHHHHHHHHHhhhHhhhccccccchhhhccccccc
Q psy3256 441 KYTRVFN-LRQEECSPGGCFMELSIQLAVIMVGQQTFNSIVAVKIPTPRQPDWGTCSEVTSMA 502 (512)
Q Consensus 441 ~y~~~f~-~r~~~c~~~gCl~eL~~QL~iimv~kQii~n~~E~~lP~l~~~~~~~~~~~~~~~ 502 (512)
+|+.+|| +|+|+|+||||+++||+||++||+|||++||++|+++|++ +++|++.+.+++..
T Consensus 506 ~~~~~f~~~r~eeC~p~gCl~eLciQl~iimlgKq~~nn~~ev~~P~f-~~~~~~~~~~~~s~ 567 (861)
T KOG2514|consen 506 DYVYLFGRYRNEECDPGGCLSELCIQLAIIMLGKQIWNNFMEVGLPKF-WKLIRQYKLKTEAR 567 (861)
T ss_pred CcceecccceeccccccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHhhhccCC
Confidence 9999999 9999999999999999999999999999999999999999 88999999776664
No 2
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=100.00 E-value=8.4e-68 Score=567.96 Aligned_cols=278 Identities=43% Similarity=0.786 Sum_probs=254.6
Q ss_pred HHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhcCCCceeecCCCcCCCCccccccccchhh
Q psy3256 150 IKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSAR 229 (512)
Q Consensus 150 Ir~YFGEkIalYFAwLgfYT~~Li~~ai~Gl~~fl~g~~~~~~~~~~~eic~~~~~~~mcP~cd~~c~~w~l~~~c~~~~ 229 (512)
||+|||||||+|||||||||+||+|||++|++++++|..
T Consensus 1 Ir~YFGekia~YFafl~~yt~~L~~~ai~G~~~~~~~~~----------------------------------------- 39 (452)
T PF04547_consen 1 IRSYFGEKIAFYFAFLGFYTRWLIPPAIFGLIVFLYGLS----------------------------------------- 39 (452)
T ss_pred ChHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 799999999999999999999999999999999999853
Q ss_pred hccccCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCccccccccCCCcchhhcccccccceeecCCCCceeecC
Q psy3256 230 VTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRA 309 (512)
Q Consensus 230 ~~~lfdn~~tv~faifm~lWat~FlE~WKR~~a~la~~Wg~~~~~~~~e~~Rp~f~~~~~~~~~~~~~~npvTg~~e~~~ 309 (512)
.++.+|++++++||++|++||++|+|+|||||++++++||+.+.++++|++||+|+|+. .+.|||||++||++
T Consensus 40 ~~~~~~~~~~~~fai~~~~W~~~fle~Wkr~~~~l~~~Wg~~~~~~~~e~~r~~f~g~~-------~~~~~vtg~~~~~~ 112 (452)
T PF04547_consen 40 FSYLFDNPFTPFFAIFMSLWATLFLEFWKRKEAELAYRWGTFDFEEEEEEPRPEFKGQP-------IRIDPVTGEMEPYY 112 (452)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhccchhhcccc-------ccccccCCCCccCC
Confidence 24568999999999999999999999999999999999999999955789999999954 37999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3256 310 PFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARL 389 (512)
Q Consensus 310 p~~~r~~r~~~s~~vv~~~i~l~i~~v~~vi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iln~v~I~il~~iY~~l 389 (512)
|.|+|..|.++|+++++++++++++++++++.++..+...+. ++ . .....+++++++|+++|+++|.+|+++
T Consensus 113 p~~~r~~r~~~s~~ivl~~i~i~~~~~~~~~~~~~~~~~~~~----~~-~---~~~~~~~~~~vl~~v~i~il~~iy~~~ 184 (452)
T PF04547_consen 113 PPWKRILRYLVSVPIVLLFILIVIGIVIGVFYLRIYLTEIYS----GP-G---KQFLASLIPTVLNAVVILILNFIYRKL 184 (452)
T ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc-c---hhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999999999987765432 12 1 234678899999999999999999999
Q ss_pred HHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCcchhhccccccccCCCCchHHHHHHHHHH
Q psy3256 390 ATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVI 469 (512)
Q Consensus 390 A~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~slfYiAF~~~~f~g~pg~y~~~f~~r~~~c~~~gCl~eL~~QL~ii 469 (512)
|.+||+||||||+++||+|+++|+|+|+|+|+|++|||+||+++ .|.++|++ |+.+|+.||+++
T Consensus 185 a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~LfyiaF~~~--------------~~~~~~~~--~~~~L~~ql~~~ 248 (452)
T PF04547_consen 185 AKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYIAFFYG--------------VRQEECQP--CLSRLRIQLFTI 248 (452)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hcccccCC--CHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 27899999 999999999999
Q ss_pred HHHHHHHHhhhHhhhccccccchhhhccccc
Q psy3256 470 MVGQQTFNSIVAVKIPTPRQPDWGTCSEVTS 500 (512)
Q Consensus 470 mv~kQii~n~~E~~lP~l~~~~~~~~~~~~~ 500 (512)
|+++|+++|++|.++|++ ++++++++.++.
T Consensus 249 ~~~~qi~~~~~e~~~P~~-~~~~~~~~~~~~ 278 (452)
T PF04547_consen 249 MVTKQIINNLLEVVLPYL-KKRYRRKKIRKK 278 (452)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 999999999999999999 788887754433
No 3
>KOG2513|consensus
Probab=100.00 E-value=7.1e-63 Score=522.77 Aligned_cols=351 Identities=28% Similarity=0.466 Sum_probs=298.9
Q ss_pred CCCCCceeeccccccccccc---cCCCCCCChHHHHHHHHHHHhcCCccccCC-------CccccccccccccCceEEee
Q psy3256 42 PMKKLPLTAQYTKAKHYLFD---EENSDFLSPPSRSLIIDFILSRQSFTANNK-------DLANVGIQRLIEDGIYKAAY 111 (512)
Q Consensus 42 ~~~~~~~~~~F~~~k~~~F~---~~~~~fFt~aeR~rIv~~iL~~~~~~~~~~-------~~~~~gI~~L~~~gv~~a~f 111 (512)
++..+--+..|.+...|.+. +|.+++||..+|+.++++-|.+.+..+++- ..++.+++.+.+.|.+.+.|
T Consensus 51 ~~~~~~~~r~F~~~e~d~~~~l~~~lr~~~t~~~~q~~n~~~l~~~~a~~~e~i~~~a~~~~~~~i~~~~~~~g~I~~vF 130 (647)
T KOG2513|consen 51 EANEKTLKRVFTREEIDCLIELAHDLRTSFTSQERQQLNAHELQSLRAPDEEIILNAAIPYHIQSIIRDLHKSGIIIQVF 130 (647)
T ss_pred eccCCCceeEEEeeccchhhhhcchhhhhhhHHHHHHHHHHHHHHhhccchhhhhccceeccccccchhhhhCceeEEec
Confidence 34567777889999999987 566779999999999999999988763221 23567888999999999999
Q ss_pred eCCCCCCCCCCCCcchhHHHHHHhhcccccccCCChhHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3256 112 PLHDGDWATGDPEKSLRYSLYKEWAHLRNWIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLN 191 (512)
Q Consensus 112 PLHD~~~~~~~~~~n~R~~L~~~Wa~~~~~~~~QPld~Ir~YFGEkIalYFAwLgfYT~~Li~~ai~Gl~~fl~g~~~~~ 191 (512)
||||... ...+.+.|.+. ..+.||||.||+|||++||+|||||+|||..+++||++|++.+.+-.
T Consensus 131 pLh~p~~---------l~~~~~~W~~~--~~~nqpld~I~~yfG~~ialYfa~L~~ft~a~i~~a~~g~~~Y~f~~---- 195 (647)
T KOG2513|consen 131 PLHDPKQ---------LEKLNKYWYQL--LTKNQPLDDIRAYFGSKIALYFAFLEFFTFALIVPAVFGILLYEFLS---- 195 (647)
T ss_pred cccChHH---------HHHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHhhccc----
Confidence 9999863 45677889863 45669999999999999999999999999999999999999875421
Q ss_pred CCcchhhhhcCCCceeecCCCcCCCCccccccccchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q psy3256 192 NDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLT 271 (512)
Q Consensus 192 ~~~~~~eic~~~~~~~mcP~cd~~c~~w~l~~~c~~~~~~~lfdn~~tv~faifm~lWat~FlE~WKR~~a~la~~Wg~~ 271 (512)
+....+||.|.++|+++|+|+|||+++.++++||+.
T Consensus 196 --------------------------------------------~~s~~~f~~f~vlWttlFlefWkrk~a~l~~~Wgt~ 231 (647)
T KOG2513|consen 196 --------------------------------------------TYSLTFFASFNVLWTTLFLEFWKRKCAELTYRWGTL 231 (647)
T ss_pred --------------------------------------------chhhhHHHHHHHHHHHHHHHHHHhhhhhcccchhhh
Confidence 012448999999999999999999999999999999
Q ss_pred ccccccccCCCcchhhcccccccceeecCCCCceeecCcccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3256 272 HFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRAPFWI-RWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATL 350 (512)
Q Consensus 272 ~~~~~~e~~Rp~f~~~~~~~~~~~~~~npvTg~~e~~~p~~~-r~~r~~~s~~vv~~~i~l~i~~v~~vi~~r~~~~~~~ 350 (512)
...+..|.|||+|.|.. +.|++||+.|||||.|+ +..++++|+|+++.++++++.+++..+.....+.
T Consensus 232 ~~~e~~~~prp~~~g~~--------~~n~itgk~e~~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~~~~--- 300 (647)
T KOG2513|consen 232 LSKELSEEPRPEFLGVL--------RINSITGKAEPYYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEVWVL--- 300 (647)
T ss_pred hhhhhhcCCCchhcccc--------ccCccccccCccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 88866789999999876 89999999999999999 5778999999999888877766665444433332
Q ss_pred hhhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q psy3256 351 SLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAF 430 (512)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~iln~v~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~slfYiAF 430 (512)
+. ..|+ ..+ +.+++|+++.+++|.+|+.+|+++|++||+||||||+++|++|++.|+|+|+|+|+|.|||||||
T Consensus 301 s~-~~~~-~~s----ils~lP~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f 374 (647)
T KOG2513|consen 301 SD-YGGP-LIS----ILSYLPTIVYAVLIPVLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAF 374 (647)
T ss_pred HH-cCCc-hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2334 233 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCcchhhccccccccCCCCchHHHHHHHHHHHHHHHHHHhhhHhhhccccccchh
Q psy3256 431 LKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVIMVGQQTFNSIVAVKIPTPRQPDWG 493 (512)
Q Consensus 431 ~~~~f~g~pg~y~~~f~~r~~~c~~~gCl~eL~~QL~iimv~kQii~n~~E~~lP~l~~~~~~ 493 (512)
+++++ .+|+.||++..++.|++.+++|..+|++ +..++
T Consensus 375 ~l~d~------------------------~~Lk~~l~~~li~sQ~l~~~~e~~~p~f-~~~~~ 412 (647)
T KOG2513|consen 375 LLRDM------------------------ELLKQQLATLLITSQSLLNLMEIALPYF-KIRTK 412 (647)
T ss_pred HhccH------------------------HHHHHHHHHHHHHHHHHHHHHhhcchHH-HHhhh
Confidence 99885 2799999999999999999999999999 55555
No 4
>KOG2514|consensus
Probab=99.47 E-value=5.1e-16 Score=170.97 Aligned_cols=374 Identities=10% Similarity=-0.089 Sum_probs=266.7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCccccCCCccccccccccccCceEEeeeCCCCCCCCCC---C--CcchhHHHHHHhhc
Q psy3256 63 ENSDFLSPPSRSLIIDFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDGDWATGD---P--EKSLRYSLYKEWAH 137 (512)
Q Consensus 63 ~~~~fFt~aeR~rIv~~iL~~~~~~~~~~~~~~~gI~~L~~~gv~~a~fPLHD~~~~~~~---~--~~n~R~~L~~~Wa~ 137 (512)
....++.++.+.+||+.+...+.++. ...+-..+. +...+++|||| ..+... . -.+.+.++...|+.
T Consensus 244 yt~~l~~~ai~glivf~yg~~~~~~~-----~~~~~~c~~--~~~~t~cplcd-~c~~~~l~~sc~~~~~~~lfdn~~tv 315 (861)
T KOG2514|consen 244 YTTMLWPASIVGLIVFIYGLATLENA-----PPSKEICKV--FTNITMCPLCD-MCNYWRLSESCVTAKVTYLFDNPSTV 315 (861)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcC-----CchHHHHhh--cCcEEeccccc-cccceehHHHHHhhHHHHHhccchHH
Confidence 45688999999999999999988732 233333333 77789999999 443332 1 44578889999999
Q ss_pred ccccccCCChhHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhcCCCceeecCCCcCCCC
Q psy3256 138 LRNWIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCD 217 (512)
Q Consensus 138 ~~~~~~~QPld~Ir~YFGEkIalYFAwLgfYT~~Li~~ai~Gl~~fl~g~~~~~~~~~~~eic~~~~~~~mcP~cd~~c~ 217 (512)
+..|+.+++.+..++++|+|++.|++|.+.++..+.+++..|...+.|+- +.+|+ |+
T Consensus 316 ffavfms~wat~f~e~wkr~~~vl~~~wdl~~~~~~ee~~~~~~~~~~~~---------~~~~~--------------~~ 372 (861)
T KOG2514|consen 316 FFAVFMSIWATVFLELWKRKQSVLTYRWDLTGFEEEEEDRPEQFEAKYET---------DPITN--------------EE 372 (861)
T ss_pred HHHHHHHHhHHHHHHHHHhhheeeeeeeccccccccccccchhhhhhhee---------ecccC--------------CC
Confidence 99999999999999999999999999999999999999999999988863 11111 44
Q ss_pred ccccccccchhhhccccCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCccccccccCCCcchhhccccccccee
Q psy3256 218 YWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTI 297 (512)
Q Consensus 218 ~w~l~~~c~~~~~~~lfdn~~tv~faifm~lWat~FlE~WKR~~a~la~~Wg~~~~~~~~e~~Rp~f~~~~~~~~~~~~~ 297 (512)
.=.++++|..+...+++++..++.+|++|+.|.++|++.|++..+-.+. +..++...++..++++...+ .....
T Consensus 373 ~~~~~~~~~r~~~~l~~~~~v~f~iav~~~~~l~V~lyri~~~~a~~~~--~~~~~~~~~~at~~a~~in~----~~i~~ 446 (861)
T KOG2514|consen 373 DEPISPWRDRYIAMLASFSFVLFMIAVVFSAVLGVILYRISMVAALQCG--KFTTSHAWLSATATAVIINL----VVIMI 446 (861)
T ss_pred CcccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccceehhhhHhHHHHHHHHH----HHHHH
Confidence 5556788999999999999999999999999999999999999998888 66666655567778777654 24568
Q ss_pred ecCCCCceeecCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhHHHHH
Q psy3256 298 MNIITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLV 377 (512)
Q Consensus 298 ~npvTg~~e~~~p~~~r~~r~~~s~~vv~~~i~l~i~~v~~vi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iln~v 377 (512)
+|++-|+.+++...+...+....+--.+++++.++..+....-+|+++..--......|. +...+.+...-..+-.
T Consensus 447 L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~yssifYVAFfkg~fvg~pg~----~~~~f~~~r~eeC~p~ 522 (861)
T KOG2514|consen 447 LNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYSSIFYIAFFKGRFVGYPGD----YVYLFGRYRNEECDPG 522 (861)
T ss_pred HHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcCceEEEEEEeceeccCCCC----cceecccceecccccc
Confidence 999999999988877766665555555566666655544444343322111011111111 1222233332233333
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCcchhhcc-ccccccCCC
Q psy3256 378 CIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFN-LRQEECSPG 456 (512)
Q Consensus 378 ~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~slfYiAF~~~~f~g~pg~y~~~f~-~r~~~c~~~ 456 (512)
..+...-++-.++..++..+|. +++....++.. +++||.+.=.+-++| +..+++.++++.+-++.. +. .
T Consensus 523 gCl~eLciQl~iimlgKq~~nn-~~ev~~P~f~~--~~~~~~~~~~s~~~~-~~~~~~~~~w~~d~~L~p~~~------~ 592 (861)
T KOG2514|consen 523 GCLSELCIQLAIIMLGKQIWNN-FMEVGLPKFWK--LIRQYKLKTEARVTI-DDDSANVERWEQDYHLQPMGL------L 592 (861)
T ss_pred chHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHH--HHHHHhhhccCCCcc-chhhhcccchhhccccCCccc------c
Confidence 4444555666788888999999 89899988876 999999999999999 888999888887654332 00 0
Q ss_pred Cc---hHH--HHHHHHHHHH-------HHHHHHhhhHhhhccc
Q psy3256 457 GC---FME--LSIQLAVIMV-------GQQTFNSIVAVKIPTP 487 (512)
Q Consensus 457 gC---l~e--L~~QL~iimv-------~kQii~n~~E~~lP~l 487 (512)
|= -+| +..+..++++ +.-++||+.|+.+|-.
T Consensus 593 gL~~eylemi~q~gFvtlFva~FpLaplfaLLnniieirlda~ 635 (861)
T KOG2514|consen 593 GLTPEYLEMILQFGFVTLFVAAFPLAPLFALLNNIIEIRLDAK 635 (861)
T ss_pred cccHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHhhhhhHH
Confidence 10 012 2222222222 3456799999999986
No 5
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=97.25 E-value=0.0043 Score=64.08 Aligned_cols=58 Identities=17% Similarity=0.448 Sum_probs=47.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHH
Q psy3256 367 IPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTS 424 (512)
Q Consensus 367 ~~~~~~iln~v~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~s 424 (512)
.+++.+++-.+++.+++.+-..+-+++.++|.|.|.++.|.+...|.|.|+|+|.+.-
T Consensus 101 ~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv 158 (325)
T PF02714_consen 101 LSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLV 158 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566667777778888899999999999999999999999999998853
No 6
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=79.59 E-value=6.2 Score=45.62 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=44.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHH
Q psy3256 364 IVIIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTS 424 (512)
Q Consensus 364 ~~~~~~~~~iln~v~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~s 424 (512)
.+++.++|+++..+++.++-.++ +||+.|+---|-+|-|....-|.|.|+|+|.|..
T Consensus 462 ~iltglLptv~~~~l~~ivP~fi----r~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV 518 (827)
T COG5594 462 GILTGLLPTVALSLLMSIVPYFI----RWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLV 518 (827)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHH----HHHHHhcCccchHHHHHHHHhhhhhheeeeehhe
Confidence 34455666666666666555544 5889999999999999999999999999998853
No 7
>KOG1134|consensus
Probab=77.98 E-value=26 Score=40.72 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=41.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHhHHHHHHHHHHHHHHhHH
Q psy3256 366 IIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTS 424 (512)
Q Consensus 366 ~~~~~~~iln~v~I~il~~iY~~lA~~LT~~EnhrT~~eye~sl~~K~FlF~FvN~y~s 424 (512)
++.++|+++..++.. +--.+-.+|+.+|-|-|.++-|.+-..|.|.|+++|-|..
T Consensus 410 I~gfLP~l~l~~~~~----~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~ 464 (728)
T KOG1134|consen 410 ITGFLPTLALVIFLA----LLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLV 464 (728)
T ss_pred HHhhhHHHHHHHHHH----HHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHH
Confidence 444455544444443 4455667899999999999999999999999999998853
No 8
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=76.57 E-value=8 Score=27.10 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCCC
Q psy3256 409 LAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPA 440 (512)
Q Consensus 409 l~~K~FlF~FvN~y~slfYiAF~~~~f~g~pg 440 (512)
+++|+++..-|..|.|||.-+|.-.+-.-.||
T Consensus 2 ~~LK~~Vy~vV~ffv~LFifGflsnDp~RnP~ 33 (36)
T PF02532_consen 2 LTLKIFVYTVVIFFVSLFIFGFLSNDPGRNPG 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTSSSS
T ss_pred eEEEEeehhhHHHHHHHHhccccCCCCCCCCC
Confidence 68999999999999999999998876554444
No 9
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=47.32 E-value=4.4 Score=28.58 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCC
Q psy3256 409 LAIKIYLFQFVNYYTSIFYIAFLKGKFIGYP 439 (512)
Q Consensus 409 l~~K~FlF~FvN~y~slfYiAF~~~~f~g~p 439 (512)
+++|+|+..-|-.|.|||.-+|.-.+=.-.|
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGflsnDP~RnP 32 (38)
T PRK02655 2 LALKISVYIVVFFFVGLFVFGFLSSDPTRNP 32 (38)
T ss_pred eeEEeeehhhHHHHHHHHHcccCCCCCCCCC
Confidence 5789999999999999999888766544334
No 10
>CHL00024 psbI photosystem II protein I
Probab=45.73 E-value=4.8 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCC
Q psy3256 409 LAIKIYLFQFVNYYTSIFYIAFLKGKFIGYP 439 (512)
Q Consensus 409 l~~K~FlF~FvN~y~slfYiAF~~~~f~g~p 439 (512)
+++|+++..-|..|.+||.-+|.-.+-.-.|
T Consensus 2 l~LKi~Vy~vV~ffvsLFifGFlsnDp~RnP 32 (36)
T CHL00024 2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCCCCCC
Confidence 5788999999999999999888766544334
No 11
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.28 E-value=2.4e+02 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy3256 370 TAACINLVCIQILNLVYARL 389 (512)
Q Consensus 370 ~~~iln~v~I~il~~iY~~l 389 (512)
+..++.++++.++|.+|++.
T Consensus 195 l~~~~~~liia~~D~~~qr~ 214 (363)
T COG1377 195 LAVLLLLLIVAAFDYFYQRF 214 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445567788888888765
No 12
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=24.60 E-value=99 Score=30.53 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=17.9
Q ss_pred CCCcee-ecCcccchhhhHHHHHHHH
Q psy3256 301 ITGTEE-PRAPFWIRWPTRILSFSVV 325 (512)
Q Consensus 301 vTg~~e-~~~p~~~r~~r~~~s~~vv 325 (512)
++|+.| +|-|+.||++|-.++..+.
T Consensus 200 IgGTIEGfHDPKFKr~p~~vias~va 225 (240)
T PRK00968 200 IGGTIEGFHDPKFKRWPRAVIASFVA 225 (240)
T ss_pred cCceeecCCCcccccchHHHHHHHHH
Confidence 466665 5678899999977665544
No 13
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=23.27 E-value=2.8e+02 Score=20.06 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3256 320 LSFSVVLILIMCALATVVGVVL 341 (512)
Q Consensus 320 ~s~~vv~~~i~l~i~~v~~vi~ 341 (512)
-|....++|+-++++.++|+|.
T Consensus 3 kSl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888764
No 14
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=20.39 E-value=52 Score=31.40 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=14.3
Q ss_pred HHHhhcCccchhHHHHHHHHHHHH
Q psy3256 149 QIKEYLGVKCAFYFVWLGFYTHML 172 (512)
Q Consensus 149 ~Ir~YFGEkIalYFAwLgfYT~~L 172 (512)
-+-|||||||+= |.=|-+||
T Consensus 140 PvPDYYGEKI~S----l~~YRqWL 159 (173)
T PF08566_consen 140 PVPDYYGEKIGS----LKDYRQWL 159 (173)
T ss_pred CCCchhhhhhcc----HHHHHHHH
Confidence 377999999975 44555555
No 15
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.05 E-value=4.5e+02 Score=31.05 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=26.3
Q ss_pred CChhHHHhhcCccchh---H----HHHHHHHHHHHHHHHHHHHHH
Q psy3256 145 QPADQIKEYLGVKCAF---Y----FVWLGFYTHMLIPASILGLTV 182 (512)
Q Consensus 145 QPld~Ir~YFGEkIal---Y----FAwLgfYT~~Li~~ai~Gl~~ 182 (512)
-|-|.|++-.+++.++ + =.|+.+|..+++.+++ |++.
T Consensus 60 ~P~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~i-~ll~ 103 (806)
T PF05478_consen 60 FPEGYIRKLLNDNSSLGPKVEKNDLELLAYEWGFLVCAVI-GLLF 103 (806)
T ss_pred CCHHHHHHHHccccccchhhHhhHHHHHHHHHHHHHHHHH-HHHH
Confidence 5889998777766544 1 2789999999887775 4443
Done!