Query psy3256
Match_columns 512
No_of_seqs 217 out of 642
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:25:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_I Photosystem II reaction 78.8 3.7 0.00013 28.0 4.7 32 409-440 2-33 (38)
2 2bai_A Genome polyprotein; zin 23.3 8.7 0.0003 25.0 -1.4 20 195-214 5-24 (32)
3 3j1r_A Archaeal adhesion filam 20.3 1.2E+02 0.0042 18.9 3.4 20 323-342 3-22 (26)
4 1pi7_A VPU protein, U ORF prot 13.0 1.7E+02 0.0058 19.7 3.0 22 240-261 13-34 (36)
5 1ews_A RK-1 defensin, alpha-de 12.9 53 0.0018 20.9 0.4 17 211-227 4-21 (32)
6 3bej_E Nuclear receptor coacti 12.9 1.1E+02 0.0039 18.8 1.9 16 69-84 7-22 (26)
7 3s3x_D Psalmotoxin-1; acid-sen 9.8 24 0.00082 23.2 -2.0 9 254-262 20-28 (37)
8 1afo_A Glycophorin A; integral 7.9 2.8E+02 0.0096 19.0 2.6 16 326-341 13-28 (40)
9 2nr1_A NR1 M2, M2; receptor, s 6.8 1.5E+02 0.0053 18.7 0.8 6 159-164 12-17 (27)
10 3mk7_C Cytochrome C oxidase, C 5.5 1.5E+03 0.052 21.5 7.9 24 164-187 4-27 (311)
No 1
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=78.76 E-value=3.7 Score=28.04 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCCC
Q psy3256 409 LAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPA 440 (512)
Q Consensus 409 l~~K~FlF~FvN~y~slfYiAF~~~~f~g~pg 440 (512)
+|+|+++..-|-.|.|||.-+|.-.+=.-.||
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGfLsnDP~RNP~ 33 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLLFVFGFLSGDPARNPK 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGCSSS
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCCCCCCC
Confidence 68999999999999999999998776544444
No 2
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=23.28 E-value=8.7 Score=24.97 Aligned_cols=20 Identities=25% Similarity=0.875 Sum_probs=15.6
Q ss_pred chhhhhcCCCceeecCCCcC
Q psy3256 195 LSRDICNKTLNIIMCPLCDR 214 (512)
Q Consensus 195 ~~~eic~~~~~~~mcP~cd~ 214 (512)
..+|+|.-+..+-.||+|..
T Consensus 5 ~~~~aCkHgyp~~~CP~CtA 24 (32)
T 2bai_A 5 MEQEICAHSMTFEECPKCSA 24 (32)
T ss_dssp CCSCCCSSSSCGGGHHHHHC
T ss_pred HHHHHHhcCCCcccccccce
Confidence 35789997767778999874
No 3
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.27 E-value=1.2e+02 Score=18.86 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3256 323 SVVLILIMCALATVVGVVLY 342 (512)
Q Consensus 323 ~vv~~~i~l~i~~v~~vi~~ 342 (512)
|++...++++++..-++.+|
T Consensus 3 piVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 3 PVIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 4
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=13.02 E-value=1.7e+02 Score=19.75 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy3256 240 VIFAFLMSIWAVLFLESWKRYS 261 (512)
Q Consensus 240 v~faifm~lWat~FlE~WKR~~ 261 (512)
+.+-+-+++|+..|.|+.|-+.
T Consensus 13 valIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667899999999998654
No 5
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=12.90 E-value=53 Score=20.90 Aligned_cols=17 Identities=29% Similarity=0.962 Sum_probs=12.8
Q ss_pred CCcCCCCccccc-cccch
Q psy3256 211 LCDRTCDYWKLS-DTCKS 227 (512)
Q Consensus 211 ~cd~~c~~w~l~-~~c~~ 227 (512)
.|.+.|+.|+.- .+|..
T Consensus 4 sckkycdpwevidgscgl 21 (32)
T 1ews_A 4 SCKKYCDPWEVIDGSCGL 21 (32)
T ss_dssp EEESSCCTTEEEEECCSS
T ss_pred ccccccChhheecccccc
Confidence 377899999965 47864
No 6
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=12.89 E-value=1.1e+02 Score=18.84 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHhcC
Q psy3256 69 SPPSRSLIIDFILSRQ 84 (512)
Q Consensus 69 t~aeR~rIv~~iL~~~ 84 (512)
|-.||++|.+.+|++-
T Consensus 7 sL~EkHkILHrLLQ~~ 22 (26)
T 3bej_E 7 SLTERHKILHRLLQEG 22 (26)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 4579999999999863
No 7
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=9.79 E-value=24 Score=23.17 Aligned_cols=9 Identities=56% Similarity=1.069 Sum_probs=6.6
Q ss_pred HHHHhhhhh
Q psy3256 254 LESWKRYSA 262 (512)
Q Consensus 254 lE~WKR~~a 262 (512)
||.|||+.+
T Consensus 20 lecwkrrrs 28 (37)
T 3s3x_D 20 LECWKRRRS 28 (37)
T ss_dssp EEEECCSSS
T ss_pred HHHHHhccc
Confidence 578888754
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=7.89 E-value=2.8e+02 Score=19.05 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3256 326 LILIMCALATVVGVVL 341 (512)
Q Consensus 326 ~~~i~l~i~~v~~vi~ 341 (512)
.+.+..++|.++|.++
T Consensus 13 ~lII~~vmaGiIG~Il 28 (40)
T 1afo_A 13 TLIIFGVMAGVIGTIL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455666666554
No 9
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.80 E-value=1.5e+02 Score=18.66 Aligned_cols=6 Identities=50% Similarity=1.569 Sum_probs=4.8
Q ss_pred hhHHHH
Q psy3256 159 AFYFVW 164 (512)
Q Consensus 159 alYFAw 164 (512)
|+||+|
T Consensus 12 a~wF~W 17 (27)
T 2nr1_A 12 AMWFSW 17 (27)
T ss_dssp HHHHHH
T ss_pred hHHHhh
Confidence 678888
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=5.48 E-value=1.5e+03 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.366 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy3256 164 WLGFYTHMLIPASILGLTVFLYGV 187 (512)
Q Consensus 164 wLgfYT~~Li~~ai~Gl~~fl~g~ 187 (512)
|-+.|...|...+++|.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (311)
T 3mk7_C 4 FWSGYIALLTLGTIVALFWLIFAT 27 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888888887777654
Done!