RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3256
         (512 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score =  272 bits (697), Expect = 5e-86
 Identities = 121/336 (36%), Positives = 169/336 (50%), Gaps = 69/336 (20%)

Query: 150 IKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMC 209
           I+ Y G K A YF +LGFYT ML+P ++LGL  FLYG  +                    
Sbjct: 1   IRSYFGEKIALYFAFLGFYTKMLLPPAVLGLICFLYGGLS-------------------- 40

Query: 210 PLCDRTCDYWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWG 269
                                T+LFDN F+VIFA  M +W+ LFLE WKR  + + +RWG
Sbjct: 41  ---------------------THLFDNPFTVIFAIFMILWSTLFLEFWKRKQSELAYRWG 79

Query: 270 LTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRAPFWIRWPTRILSFSVVLILI 329
           +  F  E E PRP +          +  ++ ITG  EP  P W R   ++LS  VVL+ I
Sbjct: 80  VLGFEEEQEEPRPEFKG-------DEIEIDPITGELEPYYPPWKRLLRQLLSIPVVLLFI 132

Query: 330 MCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARL 389
              +  ++G+ + R+ L    S         S+   +  F  A +N V I ILN +Y ++
Sbjct: 133 GLVIGIIIGIFILRIFLSEVYS-------GPSFKQSLESFLPAILNSVIILILNFIYEKV 185

Query: 390 ATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLR 449
           AT +T++E  RTQ+E++ SL +K++LFQFVN Y+ +FYIAF KG F GY           
Sbjct: 186 ATKLTDWENHRTQSEYENSLILKVFLFQFVNSYSPLFYIAFFKGPFGGY----------- 234

Query: 450 QEECSPGGCFMELSIQLAVIMVGQQTFNSIVAVKIP 485
              C  GGC  EL  QL  IM+ +Q  N+I  V +P
Sbjct: 235 ---CDFGGCLEELKYQLITIMITKQIINNITEVVLP 267


>gnl|CDD|182021 PRK09662, PRK09662, GspL-like protein; Provisional.
          Length = 286

 Score = 32.4 bits (73), Expect = 0.50
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 299 NIITGTEEPRAPF---WIRWPTRILSFSVVLILIMCALATVVGVVLYRMS 345
           N++TG  +PR  +   W RW   IL     ++LI+ ALA   GV L+ +S
Sbjct: 115 NLLTGPWQPRVSYRKQWARWRVMILP----ILLILVALAVERGVTLWSVS 160


>gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter
           ZntB-like subgroup.  A bacterial subgroup belonging to
           the Escherichia coli CorA-Salmonella typhimurium
           ZntB_like family (EcCorA_ZntB-like) of the MIT
           superfamily of essential membrane proteins involved in
           transporting divalent cations (uptake or efflux) across
           membranes. This subgroup includes the Zn2+ transporter
           Salmonella typhimurium ZntB which mediates the efflux of
           Zn2+ (and Cd2+). Structures of the intracellular domain
           of Vibrio parahaemolyticus and Salmonella typhimurium
           ZntB form funnel-shaped homopentamers, the tip of the
           funnel is formed from two C-terminal transmembrane (TM)
           helices from each monomer, and the large opening of the
           funnel from the N-terminal cytoplasmic domains. The GMN
           signature motif of the MIT superfamily occurs just after
           TM1, mutation within this motif is known to abolish Mg2+
           transport through Salmonella typhimurium CorA, and
           Mrs2p. Natural variants such as GVN and GIN, which occur
           in proteins belonging to this subfamily, may be
           associated with the transport of different divalent
           cations, such as zinc and cadmium. The functional
           diversity of MIT transporters may also be due to minor
           structural differences regulating gating, substrate
           selection, and transport.
          Length = 290

 Score = 30.5 bits (70), Expect = 1.6
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 15/49 (30%)

Query: 298 MNI--ITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRM 344
           +N+  I G E P A FWI               ++  LA  + ++  R 
Sbjct: 252 INVGGIPGAENPWA-FWI------------FCGLLVVLAVGLLLLFRRK 287


>gnl|CDD|237292 PRK13182, racA, polar chromosome segregation protein; Reviewed.
          Length = 175

 Score = 30.0 bits (68), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 43 MKKLPLTAQYTKAKHYLFDEE 63
          +K+L L  +  +  HY+F EE
Sbjct: 21 VKQLNLPCEKNEYGHYIFTEE 41


>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
           transduction mechanisms].
          Length = 890

 Score = 30.3 bits (69), Expect = 2.9
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 281 RPSYLARLSHLKRTKTIMNIITGTEEPRA-PFWIRWPTRILSF---SVVLILIMCALATV 336
           + S   RL+        ++I+     P   P  ++W  +I        ++ +++CALAT 
Sbjct: 353 KGSLADRLAREAPG-IDVHIVALDAPPDKRPNAVKWRPKIQGSWSRDYLVAILICALATA 411

Query: 337 VGVVLYRM 344
           + + L + 
Sbjct: 412 IAIQLDKF 419


>gnl|CDD|184264 PRK13708, PRK13708, plasmid maintenance protein CcdB;
          Provisional.
          Length = 101

 Score = 27.9 bits (62), Expect = 4.5
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 51 QYTKAKHY-LFDEENSDFLSPPSRSLIIDFILSRQSFTANNKDL 93
           Y +   Y LF +  SD +  P R ++I    +R      +++L
Sbjct: 7  TYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSREL 50


>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like.
           MDR/AHD-like proteins, including a protein annotated as
           a threonine dehydrogenase. L-threonine dehydrogenase
           (TDH) catalyzes the zinc-dependent formation of
           2-amino-3-ketobutyrate from L-threonine via
           NAD(H)-dependent oxidation. The zinc-dependent alcohol
           dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent
           interconversion of alcohols to aldehydes or ketones.
           Zinc-dependent ADHs are medium chain
           dehydrogenase/reductase type proteins (MDRs) and have a
           NAD(P)(H)-binding domain in a Rossmann fold of an
           beta-alpha form. The N-terminal region typically has an
           all-beta catalytic domain. In addition to alcohol
           dehydrogenases, this group includes quinone reductase,
           sorbitol dehydrogenase, formaldehyde dehydrogenase,
           butanediol DH, ketose reductase, cinnamyl reductase, and
           numerous others.  These proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 339

 Score = 29.2 bits (66), Expect = 5.0
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 232 YLFDNTFSVIFAFLMSIW----AVLFLESWK-RYSAAITHRWGL 270
            L     ++I ++  S+        FL   K      +THR+GL
Sbjct: 274 DLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHRFGL 317


>gnl|CDD|221943 pfam13156, Mrr_cat_2, Restriction endonuclease.  Prokaryotic family
           found in type II restriction enzymes containing the
           hallmark (D/E)-(D/E)XK active site. Presence of
           catalytic residues implicates this region in the
           enzymatic cleavage of DNA.
          Length = 130

 Score = 27.8 bits (62), Expect = 6.9
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 120 TGDPEKSLRYS---LYKEWAHLRNWIKN--------QPADQIKEYLGVKCAFY 161
             DP +   YS    Y +WA  + W K         +  D    Y  ++C FY
Sbjct: 1   RNDPTQKQEYSKVQTYADWAKEQGWDKRDTGIDLVAKLRDD-DGYAAIQCKFY 52


>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum
           protein 44 (ERp44)-like subfamily; composed of
           uncharacterized PDI-like eukaryotic proteins containing
           only one redox active TRX (a) domain with a CXXS motif,
           similar to ERp44. CXXS is still a redox active motif;
           however, the mixed disulfide formed with the substrate
           is more stable than those formed by CXXC motif proteins.
           PDI-related proteins are usually involved in the
           oxidative protein folding in the ER by acting as
           catalysts and folding assistants. ERp44 is involved in
           thiol-mediated retention in the ER.
          Length = 100

 Score = 26.9 bits (60), Expect = 8.5
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 250 AVLFLESWKRYSAAI--------THRWGLTHFTLEAEHPRPSYLAR 287
           AVLF  SW  +SA+         +    + H  +E    +PS L+R
Sbjct: 22  AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSR 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,196,543
Number of extensions: 2566436
Number of successful extensions: 3223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3217
Number of HSP's successfully gapped: 36
Length of query: 512
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 411
Effective length of database: 6,457,848
Effective search space: 2654175528
Effective search space used: 2654175528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)