RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3256
(512 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 65/513 (12%), Positives = 135/513 (26%), Gaps = 152/513 (29%)
Query: 56 KHYLFDEENSDFLSPPSRS----LIIDFILSRQSFTANNKDLANVGIQRLIEDGIYKAAY 111
K L EE + + +LS+Q +Q+ +E+ + + Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ----------EEMVQKFVEEVL-RINY 91
Query: 112 PLHDGDWATGDPEKSLRYSLY----------------------KEWAHLRNWIKN-QPAD 148
T + S+ +Y + + LR + +PA
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 149 QI---------KEYL--------GVKCAFYF--VWLGFYTHMLIPASILGLTVFLYGVFT 189
+ K ++ V+C F WL + P ++L + L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQID 210
Query: 190 LNNDSLSRDICNKTLNIIMCPLCDRTCDYWK----------LSDTCKSARVTYLFDNT-- 237
N S S N L I + K L + +A+ F+ +
Sbjct: 211 PNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCK 267
Query: 238 -------FSVIFAFLMSIWAVLFLESW-----KRYSAAITHRW-GLTHFTLEAE----HP 280
V + + L+ ++ ++ L E +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 281 ---------------RPSYLARLSHLKRTKTIMNIITG--TEEPRAPFWIRWPTRILSFS 323
++ K T I + + E R F S
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--------RLS 379
Query: 324 V----VLI--LIMCAL--ATVVGVVLYRMSLYATLSLSHKADWMNSYGI--VIIPFTAAC 373
V I +++ + + V+ ++ SL K ++ I + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 374 INLVCI--QILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFL 431
N + I++ Y T+ + + L Y + + ++
Sbjct: 440 ENEYALHRSIVD-HYNIPKTF--DSDDLIPPYLDQ-------YFYSHIGHH---LKNIEH 486
Query: 432 KGKFIGYPAKYTRVFNLRQEECSPGGCFMELSI 464
+ + + + R F+E I
Sbjct: 487 PERMTLFRMVF---LDFR---------FLEQKI 507
Score = 36.4 bits (83), Expect = 0.029
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 29 FI--KLCIAIEPANMPMKKLPLTAQYTKAKHYLFDEENSDFLSPPSRSL--IIDFILSRQ 84
F+ K+ N L Q K Y+ D + R + I+DF+ +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-----YERLVNAILDFLPKIE 556
Query: 85 SFTANNK--DLANVGIQRLIEDGIYKAAY 111
+K DL + + ++ I++ A+
Sbjct: 557 ENLICSKYTDLLRIALMAE-DEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 56/375 (14%), Positives = 109/375 (29%), Gaps = 123/375 (32%)
Query: 17 NILSEAANFVVLFIKLCIAIEPANMPMKKLPLTAQYTKAKHYLFDEENSDFLSPPSRSLI 76
+I + AA + + K + Y A+ F + +L
Sbjct: 100 DIHALAAKL--------LQENDTTLVKTKELIKN-YITARIMA----KRPFDKKSNSAL- 145
Query: 77 IDFILSRQSFTANNKDLANV----GIQRLIED------GIYKAAYPLHDGDW-------- 118
F A + A + G Q +D +Y+ Y + GD
Sbjct: 146 ---------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETL 195
Query: 119 -----ATGDPEKSLRYSLYKEWAHLRNWIKN---QPADQIKEYLGVKCAFYFVWLGFY-- 168
T D EK ++ + ++ W++N P +YL + +G
Sbjct: 196 SELIRTTLDAEK-----VFTQGLNILEWLENPSNTPDK---DYL-LSIPISCPLIGVIQL 246
Query: 169 THMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWK-LSDTCKS 227
H ++ A +LG T G + ++ ++ + D W+ + +
Sbjct: 247 AHYVVTAKLLGFT---PGELRSYLKGAT--GHSQ--GLVT-AVAIAETDSWESFFVSVRK 298
Query: 228 ARVTYLF------DNTFSVIFAFLMSIWAVLFLESWKR------YSAAITHRWGLTHFTL 275
A +T LF + S+ + +S + +I+ LT +
Sbjct: 299 A-ITVLFFIGVRCYEAYPNT-----SLPPSILEDSLENNEGVPSPMLSIS---NLTQEQV 349
Query: 276 E------------AEH--------PR-------PSYLARL-SHLKRTKTIMNIITGTEEP 307
+ + + P L L L++ K +G ++
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----APSGLDQS 405
Query: 308 RAPFWIRWPTRILSF 322
R PF R F
Sbjct: 406 RIPFSERKLKFSNRF 420
Score = 42.7 bits (100), Expect = 3e-04
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 30/135 (22%)
Query: 120 TGDPEKSLRYSLYKEWAHLRNWIKNQPA-DQIK-EYLGVKCAFYFVWLG----FYTHMLI 173
+G P+ SLY LR K DQ + + K F +L F++H+L+
Sbjct: 380 SGPPQ-----SLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 174 PASILGLTVFLYGVFTLNNDSLS---------RDIC----NKTLNIIMCPLCDRTCDYWK 220
PAS L + + N + D+ + + I+ C + W
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPVK-W- 490
Query: 221 LSDTCKSARVTYLFD 235
+T + T++ D
Sbjct: 491 --ETTTQFKATHILD 503
Score = 34.6 bits (79), Expect = 0.089
Identities = 40/289 (13%), Positives = 71/289 (24%), Gaps = 128/289 (44%)
Query: 131 LYKEWAHLRN-WIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILG--------LT 181
LYK ++ W ++ + GF SIL LT
Sbjct: 1635 LYKTSKAAQDVW------NRADNHFKDT-------YGF--------SILDIVINNPVNLT 1673
Query: 182 VFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFD------ 235
+ G + I +I + D K+ +Y F
Sbjct: 1674 IHFGG-------EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 236 ----NTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHL 291
T + + + L+S GL P + A S L
Sbjct: 1727 SATQFTQPALTLMEKAAFED--LKS-----------KGLI--------PADATFAGHS-L 1764
Query: 292 KRTKTIMNIITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLS 351
G E ++ ALA++ V MS+ + +
Sbjct: 1765 -----------G-E----------------YA--------ALASLADV----MSIESLVE 1784
Query: 352 LSHK------------ADWMNSYGI-------VIIPFTAACINLVCIQI 381
+ ++YG+ V F+ + V ++
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Score = 30.4 bits (68), Expect = 1.7
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 23/94 (24%)
Query: 431 LKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVIMVG-QQTF---NSI--VAVKI 484
L GKF+GY + E S G F ++ L + + + + N I +A K+
Sbjct: 60 LVGKFLGYVS--------SLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKL 108
Query: 485 PTPRQPDWGTCSEV------TSMATKRSCHNEHQ 512
E+ + KR +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Score = 30.4 bits (68), Expect = 2.0
Identities = 47/296 (15%), Positives = 89/296 (30%), Gaps = 105/296 (35%)
Query: 133 KEWAHLRNWIKNQPADQIKEYLGVKCAFYFVWLGFYTH-----MLIPASIL--------G 179
W ++ + + L F ++G + +P SIL G
Sbjct: 287 DSWE---SFFVS--VRKAITVL-------F-FIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 180 LTVFLYGVFTLNNDSLSRDI--CNKTL---------------NIIMC--P--LC--DRTC 216
+ + + L + + + N L N+++ P L + T
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 217 DYWKLSDTCKSARVTY-----LFDNTFSVIFA-F---LMSIWAVLFLE-------SWKRY 260
K +R+ + F N F + + F L+ + L + S+
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 261 SAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRAPFWIRWP---- 316
I + T + R + ++ I++ I R P ++W
Sbjct: 454 DIQIP-----VYDTFDGSDLR-VLSGSI-----SERIVDCII-----RLP--VKWETTTQ 495
Query: 317 ---TRILSF-----SVVLILIMCAL-ATVVGVVLYRMSLYATLSLSHKADWMNSYG 363
T IL F S + +L T V V+ + TL ++ D YG
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGVRVI-----VAGTLDINPDDD----YG 542
Score = 29.2 bits (65), Expect = 3.7
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 50/111 (45%)
Query: 413 IYLFQFVNYYTSIFYIAFLKGKFIGY-PAKYTRVFNLRQEECSPGGC------------- 458
I + Q +Y + K +G+ P LR G
Sbjct: 241 IGVIQLAHYVVT--------AKLLGFTPG------ELRSYLKGATGHSQGLVTAVAIAET 286
Query: 459 -----FMELSIQLAVIM--VG---QQTFN------SIVA------VKIPTP 487
F + ++ +G + + SI+ +P+P
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 31.9 bits (73), Expect = 0.67
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 237 TFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKT 296
SV+ ++++ + + + G ++ L L
Sbjct: 757 GMSVLLGVVLAVGTWITV--------TTMYAQGENGGIVQNFGNMDEVLFLQISLTENWL 808
Query: 297 IMNIITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKA 356
I PFW P+ LS ++ L+ I+ T+ G + + +
Sbjct: 809 IFITRA-----NGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRI--- 860
Query: 357 DWMNSYGIVII 367
W+ S+GI I
Sbjct: 861 -WIFSFGIFCI 870
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 30.0 bits (68), Expect = 2.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 106 IYKAAYP----------LHDGDWATGDPEKSLRYSLYKEW---AHLRNWIKNQPADQ--I 150
IYK P +H + + D E++ KEW H WIK +P + +
Sbjct: 233 IYKNENPRAVCEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTRPDKEHAL 292
Query: 151 KEYLGVKCAFYF 162
KE+ KC +
Sbjct: 293 KEFY-AKCGIKY 303
>3rlf_G Maltose transport system permease protein MALG; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
3puz_G* 3pv0_G* 3puw_G*
Length = 296
Score = 28.1 bits (63), Expect = 7.1
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 313 IRWPTRILSFSVVLILIMCALATVVGVV-LYRMSLYATLSLSHKADWMNSYGIVIIPFTA 371
+R+P + +LI M V+ +V LY + + L +N++G VI +
Sbjct: 113 MRFPGKATLLKGMLIFQM--FPAVLSLVALYAL--FDRLGEYIPFIGLNTHGGVIFAYLG 168
Query: 372 A 372
Sbjct: 169 G 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.436
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,912,938
Number of extensions: 469262
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 20
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)