RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3256
         (512 letters)



>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium
           salinarum [TaxId: 2242]}
          Length = 239

 Score = 27.3 bits (60), Expect = 4.5
 Identities = 28/156 (17%), Positives = 42/156 (26%), Gaps = 12/156 (7%)

Query: 233 LFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLK 292
           L  ++  V  A       V               R       +       SYL  LS L 
Sbjct: 5   LLSSSLWVNVALAGIAILVFVYMGRTIRPG--RPRLIWGATLMIPLVSISSYLGLLSGLT 62

Query: 293 RTKTIMNI-ITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMS------ 345
                M        E     W R+ T  LS  ++L+ +       +G +   ++      
Sbjct: 63  VGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMC 122

Query: 346 ---LYATLSLSHKADWMNSYGIVIIPFTAACINLVC 378
              L A ++ S        Y I    F      LV 
Sbjct: 123 VTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVT 158


>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
           C-terminal domains {Bacillus anthracis [TaxId: 1392]}
          Length = 223

 Score = 26.8 bits (59), Expect = 4.9
 Identities = 6/71 (8%), Positives = 20/71 (28%), Gaps = 4/71 (5%)

Query: 106 IYKAAYPLHDGDWATGDPEKSLRYSLYKEWAHLR----NWIKNQPADQIKEYLGVKCAFY 161
           I++  + + D      D  +S   +  K++  +     + + +       E+        
Sbjct: 135 IHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLM 194

Query: 162 FVWLGFYTHML 172
                     +
Sbjct: 195 HSTDHAERLKV 205


>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm
           (Helicoverpa armigera) [TaxId: 29058]}
          Length = 92

 Score = 25.6 bits (56), Expect = 5.1
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 2/50 (4%)

Query: 57  HYLFDEENSDFLSPPSRSLIIDFILSRQSFTANNKDLANVGIQR--LIED 104
           H   ++   D  S          ++ +         L   G+Q    +E+
Sbjct: 24  HDFENDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVEN 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,974,854
Number of extensions: 93267
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 11
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)