BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3259
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ZUT9|DEN5B_HUMAN DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1
            SV=2
          Length = 1274

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query: 12   PDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIKI 60
            P+  + SLTVLL GE+GLV  +EQ+F +GFKS+R+F +N+ IWD   K+
Sbjct: 1110 PEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKV 1158


>sp|Q6NXD8|DEN5B_DANRE DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2
          Length = 1311

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 12   PDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIKI 60
            P+  + SLTVLL GE GLV+ +EQ F +GF+S+R+F +N+ +WD F +I
Sbjct: 1147 PEKERGSLTVLLCGEGGLVWALEQFFHHGFRSARIFQKNVFVWDFFERI 1195


>sp|A2RSQ0|DEN5B_MOUSE DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1
            SV=2
          Length = 1274

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 36/48 (75%)

Query: 12   PDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIK 59
            P+  + SLTVLL GE+GLV  +EQ+F +GFKS+R+F +N+ IWD   K
Sbjct: 1110 PEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFVEK 1157


>sp|Q6PAL8|DEN5A_MOUSE DENN domain-containing protein 5A OS=Mus musculus GN=Dennd5a PE=1
            SV=1
          Length = 1287

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 12   PDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIK 59
            P+  + SLT+LL GE GLV  +EQ F +GFKS RLF +N+ IWD   K
Sbjct: 1126 PEKERGSLTLLLCGECGLVSALEQAFQHGFKSPRLF-KNVFIWDFLEK 1172


>sp|Q6IQ26|DEN5A_HUMAN DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1
            SV=2
          Length = 1287

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 12   PDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIK 59
            P+  + SLT+LL GE GLV  +EQ F +GFKS RLF +N+ IWD   K
Sbjct: 1126 PEKERGSLTLLLCGECGLVSALEQAFQHGFKSPRLF-KNVFIWDFLEK 1172


>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
           OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
          Length = 780

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 7   EPESFPDSPQHSLTVLLLGESGLVYCMEQIF 37
           E ESFPD+  H++ +  +  +GLV   E+IF
Sbjct: 401 ETESFPDACTHTILICSMCRNGLVREAEEIF 431


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.144    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,317,106
Number of Sequences: 539616
Number of extensions: 793261
Number of successful extensions: 1697
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)