Query psy3259
Match_columns 69
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 20:29:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4giw_A RUN and SH3 domain-cont 97.4 3.2E-05 1.1E-09 52.9 0.8 47 13-61 41-91 (198)
2 2dwk_A Protein RUFY3; RUN doma 94.7 0.022 7.6E-07 38.4 3.1 35 28-62 46-81 (180)
3 3cwz_B RAB6IP1, RAB6-interacti 78.2 1.7 5.9E-05 32.9 3.3 32 28-62 89-120 (384)
4 1qfj_A Protein (flavin reducta 55.5 5.9 0.0002 25.3 1.8 29 19-47 195-225 (232)
5 2eix_A NADH-cytochrome B5 redu 54.5 8 0.00027 24.8 2.3 30 18-47 211-241 (243)
6 1fdr_A Flavodoxin reductase; f 48.7 11 0.00038 24.2 2.3 30 18-47 206-237 (248)
7 2gpj_A Siderophore-interacting 45.7 8.2 0.00028 25.7 1.3 29 19-47 192-222 (252)
8 4eh1_A Flavohemoprotein; struc 45.2 15 0.00051 23.4 2.5 33 17-49 200-233 (243)
9 3lw5_F Photosystem I reaction 44.6 4.7 0.00016 28.2 0.0 16 15-30 54-69 (154)
10 2r6h_A NADH:ubiquinone oxidore 39.6 17 0.00058 23.9 2.2 29 19-47 256-285 (290)
11 4fk8_A Ferredoxin--NADP reduct 38.0 29 0.00099 22.7 3.1 31 17-47 227-258 (271)
12 1jb0_F Photosystem 1 reaction 37.7 8 0.00027 27.1 0.3 9 22-30 64-72 (164)
13 1qzv_F Plant photosystem I: su 37.5 7.7 0.00026 27.1 0.2 19 15-33 54-72 (154)
14 1umk_A B5R, NADH-cytochrome B5 36.8 13 0.00045 24.3 1.3 29 19-47 243-273 (275)
15 1tvc_A Methane monooxygenase c 36.4 19 0.00064 23.3 1.9 30 19-48 211-241 (250)
16 2c2q_A G/U mismatch-specific D 32.2 25 0.00086 23.9 2.1 45 2-46 9-53 (199)
17 2hzd_A Transcriptional enhance 30.7 38 0.0013 21.1 2.6 30 31-60 11-54 (82)
18 2wsc_F Photosystem I reaction 28.6 12 0.00041 27.6 0.0 16 15-30 131-146 (231)
19 1krh_A Benzoate 1,2-dioxygenas 23.9 37 0.0013 23.0 1.8 30 19-48 302-332 (338)
20 2bgi_A Ferredoxin-NADP(H) redu 21.5 52 0.0018 21.7 2.1 29 19-47 227-256 (272)
No 1
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=97.40 E-value=3.2e-05 Score=52.90 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=37.4
Q ss_pred CCCCccceeeeecCCchHHHHHHHHHHhhcccccc----ccccchHHHHHHHH
Q psy3259 13 DSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRLF----SRNLNIWDLFIKIY 61 (69)
Q Consensus 13 e~~r~sLT~LLCGE~GLV~~LeqvF~~GfkS~RlF----~rn~yiWDy~~kv~ 61 (69)
+....+++.+++| .|.+|||.+|.||.|+.+.+ .++..+||+++.+.
T Consensus 41 ~~~~~~i~~lvl~--~LC~aLe~iL~HGLk~~~~~~~~g~~~~~~W~~ie~~~ 91 (198)
T 4giw_A 41 SRLSPDVGHLVLT--TLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASV 91 (198)
T ss_dssp TTTCHHHHHHHHH--THHHHHHHHHHTTBCSEEEETTTEEEECCHHHHHHHHC
T ss_pred cccCcchHHHHHH--HHHHHHHHHHHcCCccCCcccccccccCChHHHHHHHH
Confidence 4456678888884 59999999999999987654 35678999998763
No 2
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=94.74 E-value=0.022 Score=38.40 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhhccc-cccccccchHHHHHHHHH
Q psy3259 28 GLVYCMEQIFLYGFKSS-RLFSRNLNIWDLFIKIYQ 62 (69)
Q Consensus 28 GLV~~LeqvF~~GfkS~-RlF~rn~yiWDy~~kv~~ 62 (69)
.|-.+||.+|.||.|.. .+|+.+--.||+++++..
T Consensus 46 ~LC~~lE~iL~HGLK~~~~~l~~~~~~W~~l~~~~~ 81 (180)
T 2dwk_A 46 QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEK 81 (180)
T ss_dssp HHHHHHHHHHHTTBCC-------CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccCCCCCcHHHHHHHHHh
Confidence 45689999999999986 478888899999998753
No 3
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=78.19 E-value=1.7 Score=32.90 Aligned_cols=32 Identities=16% Similarity=0.415 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q psy3259 28 GLVYCMEQIFLYGFKSSRLFSRNLNIWDLFIKIYQ 62 (69)
Q Consensus 28 GLV~~LeqvF~~GfkS~RlF~rn~yiWDy~~kv~~ 62 (69)
.|-.+||.+|.||.|..+ .+-.+||++...++
T Consensus 89 ~LC~~LE~il~HGLk~k~---gks~lW~~l~~~~~ 120 (384)
T 3cwz_B 89 SLCDLLERIWSHGLQVKQ---GKSALWSHLLHYQE 120 (384)
T ss_dssp HHHHHHHHHHHSSBCCCS---SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccc---cchHHHHHHHHHHh
Confidence 466899999999999643 35669999986643
No 4
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=55.49 E-value=5.9 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.1
Q ss_pred ceeeeecCCchHHHHHHHH--HHhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIF--LYGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF--~~GfkS~RlF 47 (69)
-...+||..+++.++.+++ ..|+...|+.
T Consensus 195 ~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~ 225 (232)
T 1qfj_A 195 HDIYIAGRFEMAKIARDLFCSERNAREDRLF 225 (232)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHSCCCGGGEE
T ss_pred cEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4579999999999999977 6799988887
No 5
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=54.54 E-value=8 Score=24.79 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=24.5
Q ss_pred cceeeeecCCchHHHHHHHHH-Hhhcccccc
Q psy3259 18 SLTVLLLGESGLVYCMEQIFL-YGFKSSRLF 47 (69)
Q Consensus 18 sLT~LLCGE~GLV~~LeqvF~-~GfkS~RlF 47 (69)
.-...+||..+++.++.+.+. .|+...|++
T Consensus 211 ~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~ 241 (243)
T 2eix_A 211 DIKVMMCGPPMMNKAMQGHLETLGYTPEQWF 241 (243)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 346899999999999988764 688887775
No 6
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=48.70 E-value=11 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=25.0
Q ss_pred cceeeeecCCchHHHHHHHH--HHhhcccccc
Q psy3259 18 SLTVLLLGESGLVYCMEQIF--LYGFKSSRLF 47 (69)
Q Consensus 18 sLT~LLCGE~GLV~~LeqvF--~~GfkS~RlF 47 (69)
.-...+||..+++.++.+++ ..|+...|+.
T Consensus 206 ~~~vy~CGp~~m~~~v~~~l~~~~G~~~~~i~ 237 (248)
T 1fdr_A 206 TSHVMLCGNPQMVRDTQQLLKETRQMTKHLRR 237 (248)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHCCCBCBTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHcCCChHHcC
Confidence 34679999999999999987 5799887764
No 7
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=45.72 E-value=8.2 Score=25.65 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.2
Q ss_pred ceeeeecCCchHHHHHHHHH--Hhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIFL--YGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF~--~GfkS~RlF 47 (69)
-...+||+.+++.++.+.+. .|....|+.
T Consensus 192 ~~vy~CGP~~m~~av~~~l~~~~G~~~~~i~ 222 (252)
T 2gpj_A 192 PAVWIACEFNSMRALRRHFKQAHALPKSHFY 222 (252)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHCCCCGGGEE
T ss_pred cEEEEEcCHHHHHHHHHHHHHhcCCCHHHeE
Confidence 35799999999999999885 699988876
No 8
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=45.23 E-value=15 Score=23.43 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.4
Q ss_pred ccceeeeecCCchHHHHHHHHH-Hhhcccccccc
Q psy3259 17 HSLTVLLLGESGLVYCMEQIFL-YGFKSSRLFSR 49 (69)
Q Consensus 17 ~sLT~LLCGE~GLV~~LeqvF~-~GfkS~RlF~r 49 (69)
..-...+||..+++.++.+.+. .|+...|++.-
T Consensus 200 ~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i~~E 233 (243)
T 4eh1_A 200 EDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYE 233 (243)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4556899999999999988774 68888887643
No 9
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_F*
Probab=44.65 E-value=4.7 Score=28.18 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=12.2
Q ss_pred CCccceeeeecCCchH
Q psy3259 15 PQHSLTVLLLGESGLV 30 (69)
Q Consensus 15 ~r~sLT~LLCGE~GLV 30 (69)
+|=+=+.||||++||=
T Consensus 54 e~Y~~~~lLCG~DGLP 69 (154)
T 3lw5_F 54 DNYGKYGLLCGSDGLP 69 (154)
T ss_dssp SCSCCCCCCCCSSSCC
T ss_pred HHhcccccccCCCCCc
Confidence 4555567999999984
No 10
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=39.63 E-value=17 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=23.9
Q ss_pred ceeeeecCCchHHHHHHHHH-Hhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIFL-YGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF~-~GfkS~RlF 47 (69)
-...+||..+++.++.+++. .|+...|++
T Consensus 256 ~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~ 285 (290)
T 2r6h_A 256 IEYYMCGPGPMANAVKGMLENLGVPRNMLF 285 (290)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 35799999999999988765 688887776
No 11
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=38.02 E-value=29 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.1
Q ss_pred ccceeeeecCCchHHHHHHHH-HHhhcccccc
Q psy3259 17 HSLTVLLLGESGLVYCMEQIF-LYGFKSSRLF 47 (69)
Q Consensus 17 ~sLT~LLCGE~GLV~~LeqvF-~~GfkS~RlF 47 (69)
..-...+||..+++.++.+++ ..|+...|+-
T Consensus 227 ~~~~v~vCGp~~m~~~v~~~l~~~gv~~~~i~ 258 (271)
T 4fk8_A 227 EQDRVMLCGSTAMLKDTTELLKKAGLVEGKNS 258 (271)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHTTCCBCBTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCchhhcC
Confidence 456789999999999998876 4788877764
No 12
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1 PDB: 3pcq_F*
Probab=37.72 E-value=8 Score=27.14 Aligned_cols=9 Identities=56% Similarity=0.770 Sum_probs=7.9
Q ss_pred eeecCCchH
Q psy3259 22 LLLGESGLV 30 (69)
Q Consensus 22 LLCGE~GLV 30 (69)
+|||++||=
T Consensus 64 ~LCG~DGLP 72 (164)
T 1jb0_F 64 ALCGEDGLP 72 (164)
T ss_dssp SEECTTSSB
T ss_pred hccCCCCCc
Confidence 899999974
No 13
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=37.53 E-value=7.7 Score=27.12 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=13.5
Q ss_pred CCccceeeeecCCchHHHH
Q psy3259 15 PQHSLTVLLLGESGLVYCM 33 (69)
Q Consensus 15 ~r~sLT~LLCGE~GLV~~L 33 (69)
++=+=+-||||++||=+-|
T Consensus 54 dkYgkSGLLCG~DGLPHLI 72 (154)
T 1qzv_F 54 XXXXXXXXXXXXXXXXXXX 72 (154)
T ss_pred ccccccccccccccccccc
Confidence 3334567999999996654
No 14
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=36.81 E-value=13 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.8
Q ss_pred ceeeeecCCchHH-HHHHHH-HHhhcccccc
Q psy3259 19 LTVLLLGESGLVY-CMEQIF-LYGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~-~LeqvF-~~GfkS~RlF 47 (69)
-...+||..+++. ++.+.+ ..|+...|+|
T Consensus 243 ~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~ 273 (275)
T 1umk_A 243 PLVLMCGPPPMIQYACLPNLDHVGHPTERCF 273 (275)
T ss_dssp CEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 3578999999999 765544 5799988876
No 15
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=36.43 E-value=19 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.6
Q ss_pred ceeeeecCCchHHHHHHHHH-Hhhccccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIFL-YGFKSSRLFS 48 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF~-~GfkS~RlF~ 48 (69)
-...+||..+++.++.+.+. .|+...|++.
T Consensus 211 ~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~ 241 (250)
T 1tvc_A 211 PDIYLCGPPGMIDAACELVRSRGIPGEQVFF 241 (250)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHCCCCSEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 45899999999999988875 5888888763
No 16
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Probab=32.24 E-value=25 Score=23.94 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=34.0
Q ss_pred CccCCCcccCCCCCCccceeeeecCCchHHHHHHHHHHhhccccc
Q psy3259 2 SLLGFEPESFPDSPQHSLTVLLLGESGLVYCMEQIFLYGFKSSRL 46 (69)
Q Consensus 2 ~~~~~~~~~~pe~~r~sLT~LLCGE~GLV~~LeqvF~~GfkS~Rl 46 (69)
.+...+...-|+--...+..|+||-+-=+.+.++-|.||-.+.|+
T Consensus 9 ~~~~~~~~~~ppil~~~~rvLilGs~Pg~~S~~~g~yYahp~N~F 53 (199)
T 2c2q_A 9 DLTGSGEYLVPDVLQPGLTLVLVGTAPSGISARARAYYANPENKF 53 (199)
T ss_dssp CTTTTTTCSSCCBCCTTCSEEEEESCCCHHHHHHTSSSCSTTCCH
T ss_pred chhhhccCCCCCccCCCCcEEEEecCcChhhhhcCCccCCCCCcH
Confidence 344455556677667789999999554489999999999887774
No 17
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=30.74 E-value=38 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHhh--------c----c--ccccccccchHHHHHHH
Q psy3259 31 YCMEQIFLYGF--------K----S--SRLFSRNLNIWDLFIKI 60 (69)
Q Consensus 31 ~~LeqvF~~Gf--------k----S--~RlF~rn~yiWDy~~kv 60 (69)
+.||++|+-+. + | .|+++||-+|=|||-..
T Consensus 11 ~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~ 54 (82)
T 2hzd_A 11 PDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLR 54 (82)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHH
Confidence 56778887643 3 2 58899999999998743
No 18
>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Probab=28.62 E-value=12 Score=27.57 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=11.8
Q ss_pred CCccceeeeecCCchH
Q psy3259 15 PQHSLTVLLLGESGLV 30 (69)
Q Consensus 15 ~r~sLT~LLCGE~GLV 30 (69)
+|=+=+-+|||++||=
T Consensus 131 e~Y~~~g~LCG~DGLP 146 (231)
T 2wsc_F 131 DNYGKYGLLCGSDGLP 146 (231)
T ss_dssp SCSCCCCCCCCSSCCC
T ss_pred HHhcccccccCCCCCc
Confidence 4555556999999984
No 19
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=23.94 E-value=37 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.4
Q ss_pred ceeeeecCCchHHHHHHHH-HHhhccccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIF-LYGFKSSRLFS 48 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF-~~GfkS~RlF~ 48 (69)
-...+||..+++.++.+.+ ..|+...|++.
T Consensus 302 ~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~ 332 (338)
T 1krh_A 302 VDVYLCGPVPMVEAVRSWLDTQGIQPANFLF 332 (338)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 4589999999999998877 46888877763
No 20
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=21.49 E-value=52 Score=21.67 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=23.3
Q ss_pred ceeeeecCCchHHHHHHHHH-Hhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIFL-YGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF~-~GfkS~RlF 47 (69)
-...+||..+++.++.+.+. .|+...|+.
T Consensus 227 ~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~ 256 (272)
T 2bgi_A 227 DRAMVCGSLAFNVDVMKVLESYGLREGANS 256 (272)
T ss_dssp EEEEEEECHHHHHHHHHHHHTTTCCBCBTT
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCChHHcC
Confidence 45789999999999988875 588876664
Done!