Query psy3259
Match_columns 69
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 20:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cxfa1 a.256.1.1 (A:83-249) R 97.1 0.00011 7.9E-09 47.0 2.2 35 28-62 39-74 (167)
2 d1qfja2 c.25.1.1 (A:98-232) NA 77.3 0.56 4.1E-05 26.6 1.8 29 19-47 98-128 (135)
3 d1gvha3 c.25.1.5 (A:254-396) F 60.0 2.5 0.00019 23.8 2.1 30 18-47 103-133 (143)
4 d2cnda2 c.25.1.1 (A:125-270) N 56.1 1 7.5E-05 25.1 -0.2 29 19-47 113-143 (146)
5 d1cqxa3 c.25.1.5 (A:262-403) F 51.2 4.4 0.00032 22.6 2.1 29 19-47 102-131 (142)
6 d1umka2 c.25.1.1 (A:154-300) c 42.1 4.8 0.00035 23.0 1.3 30 18-47 114-145 (147)
7 d1tvca2 c.25.1.2 (A:111-251) M 41.6 7.4 0.00054 22.1 2.1 30 19-48 102-132 (141)
8 d1fdra2 c.25.1.1 (A:101-248) F 39.1 9.3 0.00068 21.3 2.2 28 20-47 108-137 (148)
9 d1krha2 c.25.1.2 (A:206-338) B 33.2 11 0.00083 20.9 2.0 31 17-47 95-126 (133)
10 d1jb9a2 c.25.1.1 (A:163-316) F 28.4 21 0.0015 19.7 2.6 20 20-39 108-127 (154)
11 d2piaa2 c.25.1.2 (A:104-223) P 27.7 12 0.00088 20.1 1.4 28 18-46 90-117 (120)
12 d1jb0f_ f.23.16.1 (F:) Subunit 23.6 9.7 0.00071 24.6 0.4 11 21-31 40-50 (141)
13 d1gyta1 c.50.1.1 (A:1-178) Leu 23.1 61 0.0044 18.4 4.1 33 8-40 143-177 (178)
14 d2bmwa2 c.25.1.1 (A:142-303) F 21.1 36 0.0026 18.6 2.6 27 20-46 116-143 (162)
15 d1koza_ g.3.6.2 (A:) Grammotox 21.0 6.8 0.00049 20.3 -0.6 10 46-55 24-33 (36)
16 d1a8pa2 c.25.1.1 (A:101-258) F 20.4 43 0.0032 18.2 2.9 28 18-45 113-141 (158)
17 d1fnda2 c.25.1.1 (A:155-314) F 20.2 27 0.0019 19.3 1.9 19 20-38 114-132 (160)
No 1
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.09 E-value=0.00011 Score=47.01 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhhcccc-ccccccchHHHHHHHHH
Q psy3259 28 GLVYCMEQIFLYGFKSSR-LFSRNLNIWDLFIKIYQ 62 (69)
Q Consensus 28 GLV~~LeqvF~~GfkS~R-lF~rn~yiWDy~~kv~~ 62 (69)
-|..+||++|+||.|+.+ +|+++-.+||+++++..
T Consensus 39 ~Lc~~lE~iL~hGLK~~~~~~~~~~~~W~~l~~~~~ 74 (167)
T d2cxfa1 39 QFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEK 74 (167)
T ss_dssp HHHHHHHHHHTTTBCCCCCTTCCCCTTHHHHHTGGG
T ss_pred HHHHHHHHHHHcCCcccccccCCCCcHHHHHHHHHH
Confidence 356899999999999876 36777789999988753
No 2
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=77.35 E-value=0.56 Score=26.60 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.3
Q ss_pred ceeeeecCCchHHHHHHHH--HHhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIF--LYGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF--~~GfkS~RlF 47 (69)
-...+||-.+.|.++.+++ ..|+...+++
T Consensus 98 ~~~yvCGp~~m~~~~~~~L~~~~G~~~~~i~ 128 (135)
T d1qfja2 98 HDIYIAGRFEMAKIARDLFCSERNAREDRLF 128 (135)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHSCCCGGGEE
T ss_pred CceEeeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 3589999999999998887 4799999988
No 3
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=60.01 E-value=2.5 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=24.8
Q ss_pred cceeeeecCCchHHHHHHHH-HHhhcccccc
Q psy3259 18 SLTVLLLGESGLVYCMEQIF-LYGFKSSRLF 47 (69)
Q Consensus 18 sLT~LLCGE~GLV~~LeqvF-~~GfkS~RlF 47 (69)
+-+.++||..+++.++++.+ ..|+...|++
T Consensus 103 ~~~~~iCGp~~m~~~v~~~L~~~G~~~~~i~ 133 (143)
T d1gvha3 103 TMQFYLCGPVGFMQFTAKQLVDLGVKQENIH 133 (143)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHcCCCHHHEE
Confidence 45789999999999988766 4789888876
No 4
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}
Probab=56.09 E-value=1 Score=25.08 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=23.1
Q ss_pred ceeeeecCCchHH-HHHHHH-HHhhcccccc
Q psy3259 19 LTVLLLGESGLVY-CMEQIF-LYGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~-~LeqvF-~~GfkS~RlF 47 (69)
-..++||-.+.+. ++.... ..|+..+|+|
T Consensus 113 ~~vyiCGp~~m~~~av~~~L~~~G~~~~~i~ 143 (146)
T d2cnda2 113 TLALACGPPPMIQFAISPNLEKMKYDMANSF 143 (146)
T ss_dssp EEEEEECCHHHHHTTTHHHHHTTTCCHHHHE
T ss_pred cEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4689999999998 455444 7899998887
No 5
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=51.17 E-value=4.4 Score=22.58 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=23.4
Q ss_pred ceeeeecCCchHHHHHHHHH-Hhhcccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIFL-YGFKSSRLF 47 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF~-~GfkS~RlF 47 (69)
-...+||-.+.+.++.+.+. .|+...|++
T Consensus 102 ~~vyiCGp~~m~~~v~~~L~~~G~~~~~i~ 131 (142)
T d1cqxa3 102 ADYYICGPIPFMRMQHDALKNLGIHEARIH 131 (142)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCGGGEE
T ss_pred ceEEEECChhHHHHHHHHHHHcCCCHHHEE
Confidence 36899999999999988775 578777765
No 6
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.11 E-value=4.8 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=22.9
Q ss_pred cceeeeecCCchHH-HHHHH-HHHhhcccccc
Q psy3259 18 SLTVLLLGESGLVY-CMEQI-FLYGFKSSRLF 47 (69)
Q Consensus 18 sLT~LLCGE~GLV~-~Leqv-F~~GfkS~RlF 47 (69)
.-..++||-.+.+. +..++ -..|+...|+|
T Consensus 114 ~~~vyiCGP~~m~~~~~~~~L~~~G~~~e~i~ 145 (147)
T d1umka2 114 EPLVLMCGPPPMIQYACLPNLDHVGHPTERCF 145 (147)
T ss_dssp CCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 44689999999995 45444 56699998886
No 7
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=41.60 E-value=7.4 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=24.1
Q ss_pred ceeeeecCCchHHHHHHHH-HHhhccccccc
Q psy3259 19 LTVLLLGESGLVYCMEQIF-LYGFKSSRLFS 48 (69)
Q Consensus 19 LT~LLCGE~GLV~~LeqvF-~~GfkS~RlF~ 48 (69)
-...+||-.++|.++.+.+ ..|+...|++.
T Consensus 102 ~~vyiCGp~~m~~~v~~~l~~~Gv~~~~i~~ 132 (141)
T d1tvca2 102 PDIYLCGPPGMIDAACELVRSRGIPGEQVFF 132 (141)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHCCCCSEEEE
T ss_pred ceeeccCCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 3579999999999998877 46888777764
No 8
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}
Probab=39.06 E-value=9.3 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.0
Q ss_pred eeeeecCCchHHHHHHHHH--Hhhcccccc
Q psy3259 20 TVLLLGESGLVYCMEQIFL--YGFKSSRLF 47 (69)
Q Consensus 20 T~LLCGE~GLV~~LeqvF~--~GfkS~RlF 47 (69)
...+||-.+.|.++.+++. .|+...+..
T Consensus 108 ~vyiCGp~~m~~~v~~~L~e~~g~~e~~~~ 137 (148)
T d1fdra2 108 HVMLCGNPQMVRDTQQLLKETRQMTKHLRR 137 (148)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHCCCBCBTT
T ss_pred eEEEECCHHHHHHHHHHHHHhcCCCccCCC
Confidence 3899999999999999994 688766544
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=33.21 E-value=11 Score=20.94 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=24.5
Q ss_pred ccceeeeecCCchHHHHHHH-HHHhhcccccc
Q psy3259 17 HSLTVLLLGESGLVYCMEQI-FLYGFKSSRLF 47 (69)
Q Consensus 17 ~sLT~LLCGE~GLV~~Leqv-F~~GfkS~RlF 47 (69)
++....+||-.+++.++.+. ...|+...+++
T Consensus 95 ~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~ 126 (133)
T d1krha2 95 GEVDVYLCGPVPMVEAVRSWLDTQGIQPANFL 126 (133)
T ss_dssp GCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEE
T ss_pred ccceEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence 45678999999999988776 45788877765
No 10
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}
Probab=28.39 E-value=21 Score=19.75 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=16.8
Q ss_pred eeeeecCCchHHHHHHHHHH
Q psy3259 20 TVLLLGESGLVYCMEQIFLY 39 (69)
Q Consensus 20 T~LLCGE~GLV~~LeqvF~~ 39 (69)
...+||..+.++.+.+++.-
T Consensus 108 ~~yvCGp~~mm~~v~~~L~~ 127 (154)
T d1jb9a2 108 HIYFCGLKGMMPGIQDTLKK 127 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 68999999999888887753
No 11
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=27.67 E-value=12 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=21.3
Q ss_pred cceeeeecCCchHHHHHHHHHHhhccccc
Q psy3259 18 SLTVLLLGESGLVYCMEQIFLYGFKSSRL 46 (69)
Q Consensus 18 sLT~LLCGE~GLV~~LeqvF~~GfkS~Rl 46 (69)
.-...+||-.++|.++.+.+ .|+-..|+
T Consensus 90 ~~~~y~CGp~~mi~~v~~~~-~~~~~~~i 117 (120)
T d2piaa2 90 AQHVYCCGPQALMDTVRDMT-GHWPSGTV 117 (120)
T ss_dssp TEEEEEESCHHHHHHHHHHT-TTSCTTCE
T ss_pred cCEEEEeCCHHHHHHHHHHH-cCCCHHHe
Confidence 34689999999999999976 46654443
No 12
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=23.59 E-value=9.7 Score=24.56 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=8.4
Q ss_pred eeeecCCchHH
Q psy3259 21 VLLLGESGLVY 31 (69)
Q Consensus 21 ~LLCGE~GLV~ 31 (69)
..|||++||=+
T Consensus 40 ~aLCG~DGLPH 50 (141)
T d1jb0f_ 40 QALCGEDGLPH 50 (141)
T ss_dssp TSEECTTSSBC
T ss_pred HhccCCCCCce
Confidence 35999999843
No 13
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]}
Probab=23.12 E-value=61 Score=18.43 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=20.0
Q ss_pred cccCCCCCCccce--eeeecCCchHHHHHHHHHHh
Q psy3259 8 PESFPDSPQHSLT--VLLLGESGLVYCMEQIFLYG 40 (69)
Q Consensus 8 ~~~~pe~~r~sLT--~LLCGE~GLV~~LeqvF~~G 40 (69)
|+++++++...|. .+++.+..=...++++...|
T Consensus 143 yKskk~~~~~~l~~i~~~~~~~~~~~~~~~ai~~G 177 (178)
T d1gyta1 143 LKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHG 177 (178)
T ss_dssp TCSSCCCCCCCCCEEEEECSSGGGHHHHHHHHHHH
T ss_pred eecCCCCCCCCccEEEEEcCCHHHHHHHHHHHHhh
Confidence 5555555554443 34455666667778887776
No 14
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=21.12 E-value=36 Score=18.57 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=19.9
Q ss_pred eeeeecCCchHHHHHHHHH-Hhhccccc
Q psy3259 20 TVLLLGESGLVYCMEQIFL-YGFKSSRL 46 (69)
Q Consensus 20 T~LLCGE~GLV~~LeqvF~-~GfkS~Rl 46 (69)
...+||-.+.+.++.+++. .|.++...
T Consensus 116 ~vyvCGp~~m~~~v~~~L~~~g~~~~~~ 143 (162)
T d2bmwa2 116 HTYICGPPPMEEGIDAALSAAAAKEGVT 143 (162)
T ss_dssp EEEEEECTTHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCHHHHHHHHHHHHHhhcccCcc
Confidence 5899999999998888764 35554443
No 15
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=20.98 E-value=6.8 Score=20.25 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=8.0
Q ss_pred ccccccchHH
Q psy3259 46 LFSRNLNIWD 55 (69)
Q Consensus 46 lF~rn~yiWD 55 (69)
...||+.+||
T Consensus 24 kwprnicvwd 33 (36)
T d1koza_ 24 KWPRNICVWD 33 (36)
T ss_dssp SSSSSBCEEC
T ss_pred cCCceeEeec
Confidence 4568999998
No 16
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}
Probab=20.37 E-value=43 Score=18.24 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=22.5
Q ss_pred cceeeeecCCchHHHHHHH-HHHhhcccc
Q psy3259 18 SLTVLLLGESGLVYCMEQI-FLYGFKSSR 45 (69)
Q Consensus 18 sLT~LLCGE~GLV~~Leqv-F~~GfkS~R 45 (69)
.-...+||-.+.+..++++ -.+|++..-
T Consensus 113 ~~~~yiCGp~~m~~~v~~~L~~~G~~~~~ 141 (158)
T d1a8pa2 113 DDRAMICGSPSMLDESCEVLDGFGLKISP 141 (158)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHTTCCBCS
T ss_pred cceEEEECCHHHHHHHHHHHHHcCCCccC
Confidence 4468999999999999888 468887543
No 17
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=20.16 E-value=27 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.1
Q ss_pred eeeeecCCchHHHHHHHHH
Q psy3259 20 TVLLLGESGLVYCMEQIFL 38 (69)
Q Consensus 20 T~LLCGE~GLV~~LeqvF~ 38 (69)
...+||-.+.+.++++++.
T Consensus 114 ~vyiCGp~~m~~~v~~~l~ 132 (160)
T d1fnda2 114 YVYMCGLKGMEKGIDDIMV 132 (160)
T ss_dssp EEEEEECHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 3689999999999888775
Done!