RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3259
(69 letters)
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 25.5 bits (57), Expect = 1.3
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 20 TVLLLGESG 28
TVL+ G+SG
Sbjct: 27 TVLIHGDSG 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 1.4
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 5/20 (25%)
Query: 2 SLLGFEPESFPDSPQHSLTV 21
SL + +S P +L +
Sbjct: 28 SLKLYADDSAP-----ALAI 42
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator,
enhancer binding protein, PSPF; 1.7A {Escherichia coli}
PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 24.8 bits (55), Expect = 2.0
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 20 TVLLLGESG 28
VL++GE G
Sbjct: 31 PVLIIGERG 39
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 24.8 bits (55), Expect = 2.1
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 6 FEPESFPDSPQH 17
FE + P S Q
Sbjct: 303 FECQVSPGSEQI 314
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein
binding, structural genomics, NPPSFA; 2.00A {Mus
musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Length = 180
Score = 24.6 bits (53), Expect = 2.5
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 29 LVYCMEQIFLYGFKSSR-LFSRNLNIWDLFIKI 60
ME +G K+ + +N + W +
Sbjct: 47 FFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELV 79
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 24.4 bits (54), Expect = 3.0
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 6 FEPESFPDSPQH 17
EP+ +P
Sbjct: 302 IEPQFHSAAPNF 313
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 24.4 bits (54), Expect = 3.2
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 6 FEPESFPDSPQH 17
E +++PD+
Sbjct: 308 LETQNWPDAVNQ 319
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 24.4 bits (54), Expect = 3.6
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 6 FEPESFPDSPQH 17
FE + P
Sbjct: 298 FEAQCPPAEGND 309
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 24.1 bits (53), Expect = 4.9
Identities = 1/12 (8%), Positives = 4/12 (33%)
Query: 6 FEPESFPDSPQH 17
+ + D+
Sbjct: 306 VQQGRYVDAINR 317
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 23.7 bits (52), Expect = 4.9
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 16 QHSLTVLLLGESG 28
+ + V L GE+G
Sbjct: 25 KRTSPVFLTGEAG 37
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 24.0 bits (53), Expect = 5.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 20 TVLLLGESG 28
VL+ GESG
Sbjct: 162 PVLITGESG 170
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 23.6 bits (52), Expect = 6.0
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 16 QHSLTVLLLGESG 28
+ + V L G G
Sbjct: 22 ETDIAVWLYGAPG 34
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 23.6 bits (52), Expect = 6.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 20 TVLLLGESG 28
VL+ GESG
Sbjct: 154 PVLITGESG 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.144 0.442
Gapped
Lambda K H
0.267 0.0828 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,004,938
Number of extensions: 42562
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 16
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)