RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3259
         (69 letters)



>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 26.4 bits (58), Expect = 0.23
 Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 29 LVYCMEQIFLYGFKSSR-LFSRNLNIWDLFIKI 60
              ME    +G K+ +    +N + W     +
Sbjct: 40 FFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELV 72


>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 344

 Score = 24.9 bits (53), Expect = 0.92
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 3/24 (12%)

Query: 6   FEPESFPDSPQHS---LTVLLLGE 26
            E +++PD+         +L  GE
Sbjct: 308 LETQNWPDAVNQPRFPPVLLRPGE 331


>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 340

 Score = 24.7 bits (53), Expect = 1.1
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 4   LGFEPESFPDSPQH 17
           + FE +  P S Q 
Sbjct: 300 ITFECQVSPGSEQI 313


>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite
           (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}
          Length = 129

 Score = 23.7 bits (51), Expect = 2.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 8   PESFPDSPQHSLTVLLLGESGLVYC 32
           P+  P S    +TV L+G++G++ C
Sbjct: 95  PKIAPKSENVVVTVKLVGDNGVLAC 119


>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 23.6 bits (50), Expect = 2.5
 Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 4/25 (16%)

Query: 6   FEPESFPDSPQH----SLTVLLLGE 26
            EP  + D+           L  GE
Sbjct: 307 IEPGRYIDAINQENWKDCVTLKNGE 331


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 329

 Score = 23.6 bits (50), Expect = 2.6
 Identities = 4/15 (26%), Positives = 6/15 (40%)

Query: 4   LGFEPESFPDSPQHS 18
           L  EP+    +P   
Sbjct: 290 LAIEPQFHSAAPNFD 304


>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
          (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 247

 Score = 22.2 bits (47), Expect = 7.9
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 16 QHSLTVLLLGESG 28
               VL+ GESG
Sbjct: 21 CAECPVLITGESG 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 253,511
Number of extensions: 8765
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 10
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)