Query psy3260
Match_columns 100
No_of_seqs 102 out of 582
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:32:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 9.3E-40 3.2E-44 266.5 6.2 97 2-98 162-267 (505)
2 1xv5_A AGT, DNA alpha-glucosyl 19.7 16 0.00055 27.7 -0.8 10 89-98 317-326 (401)
3 2jni_A Arenicin-2; peptide, an 17.6 81 0.0028 15.3 1.8 11 81-91 4-14 (26)
4 2pif_A UPF0317 protein pspto_5 17.1 35 0.0012 25.8 0.5 9 88-96 223-231 (276)
5 2lyd_B Pacman protein; DCP1, X 12.7 11 0.00039 20.1 -2.3 6 92-97 25-30 (38)
6 3sgg_A Hypothetical hydrolase; 10.9 98 0.0033 25.4 1.5 13 87-99 329-341 (536)
7 2bp3_S Platelet glycoprotein I 10.0 63 0.0022 15.7 0.1 7 88-94 2-8 (26)
8 3f08_A Uncharacterized protein 9.1 3.3E+02 0.011 17.3 3.4 24 70-93 56-81 (146)
9 3zy0_A Tumor protein P63; tran 8.3 1.4E+02 0.0049 15.3 1.0 7 84-90 7-13 (32)
10 2ftc_C L3MT, MRP-L3, mitochond 7.5 2.4E+02 0.0082 20.3 2.3 35 58-92 159-195 (211)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-40 Score=266.46 Aligned_cols=97 Identities=36% Similarity=0.585 Sum_probs=88.9
Q ss_pred cccceeeecc---CCCCeEEEEEEeEEEEEEEEECCeeeEEEEEEeeeccccCccceeccCCCCCceeeeEEEEEEEeeC
Q psy3260 2 LHIHLLRFSI---DPSPWLLKIMCGSIEIRTVYVGHRQARAVIISRLSCERAGTRFNVRGVNDDGHVANFVETEQVLFLD 78 (100)
Q Consensus 2 ~~~~l~~~~~---~~~~~~~~ii~G~~~~~~~~~~~~~~~~~LISRrS~~~~GtRy~~RGid~~G~vaNfvEtE~iv~~~ 78 (100)
+..||++.+. +.+.||+|+||||+++..+.+.++++.++||||||++||||||++||+|++|+||||||||||++.+
T Consensus 162 l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVETEqIv~~~ 241 (505)
T 3lwt_X 162 LTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAE 241 (505)
T ss_dssp GGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEEEEEEEEEE
T ss_pred HHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceeeEEEEEEeC
Confidence 4566766554 2458999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C------cEEEEEEeccCceeeEEeC
Q psy3260 79 D------EVTSYVQTRGSVPLFWEQP 98 (100)
Q Consensus 79 ~------~~~SfvqiRGSVPlfW~q~ 98 (100)
+ .++||||+||||||||+|.
T Consensus 242 ~~~~~~~~~~SfvQiRGSVPlfW~Q~ 267 (505)
T 3lwt_X 242 NPESEKIHVFSFLQTRGSVPIYWAEI 267 (505)
T ss_dssp CTTTCCEEEEEEEEEEECCCSBSCCC
T ss_pred CCCCCCccEEEEEEeccccCceeeec
Confidence 7 8999999999999999995
No 2
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=19.74 E-value=16 Score=27.74 Aligned_cols=10 Identities=40% Similarity=1.441 Sum_probs=8.0
Q ss_pred cCceeeEEeC
Q psy3260 89 GSVPLFWEQP 98 (100)
Q Consensus 89 GSVPlfW~q~ 98 (100)
|.||+||...
T Consensus 317 gtipvfwkst 326 (401)
T 1xv5_A 317 GTIPVFWKST 326 (401)
T ss_dssp TSEEEEEHHH
T ss_pred cceeeeeccc
Confidence 8899999653
No 3
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=17.60 E-value=81 Score=15.27 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.7
Q ss_pred EEEEEEeccCc
Q psy3260 81 VTSYVQTRGSV 91 (100)
Q Consensus 81 ~~SfvqiRGSV 91 (100)
++.||.+||-.
T Consensus 4 vyayvrirgvl 14 (26)
T 2jni_A 4 VYAYVRIRGVL 14 (26)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEEEEEE
Confidence 56899999964
No 4
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=17.14 E-value=35 Score=25.83 Aligned_cols=9 Identities=56% Similarity=1.475 Sum_probs=6.1
Q ss_pred ccCceeeEE
Q psy3260 88 RGSVPLFWE 96 (100)
Q Consensus 88 RGSVPlfW~ 96 (100)
-|.||+||-
T Consensus 223 ~geVPVFWa 231 (276)
T 2pif_A 223 PGEVPVFWA 231 (276)
T ss_dssp TTEEEEEEE
T ss_pred CCCcceEec
Confidence 456788884
No 5
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=12.71 E-value=11 Score=20.08 Aligned_cols=6 Identities=83% Similarity=2.062 Sum_probs=3.5
Q ss_pred eeeEEe
Q psy3260 92 PLFWEQ 97 (100)
Q Consensus 92 PlfW~q 97 (100)
||||.+
T Consensus 25 plfwq~ 30 (38)
T 2lyd_B 25 PLFWQQ 30 (38)
T ss_dssp CHHHHH
T ss_pred chHHHH
Confidence 566654
No 6
>3sgg_A Hypothetical hydrolase; 7-stranded beta/alpha barrel, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.25A {Bacteroides thetaiotaomicron}
Probab=10.93 E-value=98 Score=25.42 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=10.5
Q ss_pred eccCceeeEEeCC
Q psy3260 87 TRGSVPLFWEQPG 99 (100)
Q Consensus 87 iRGSVPlfW~q~g 99 (100)
-||+||+-|+-.+
T Consensus 329 ~RG~vPlgWtisP 341 (536)
T 3sgg_A 329 LHGQFPLGYTISP 341 (536)
T ss_dssp TTTSSCEEEEECT
T ss_pred CCCceeeeeEeCH
Confidence 3999999998653
No 7
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=9.96 E-value=63 Score=15.75 Aligned_cols=7 Identities=71% Similarity=1.360 Sum_probs=5.1
Q ss_pred ccCceee
Q psy3260 88 RGSVPLF 94 (100)
Q Consensus 88 RGSVPlf 94 (100)
+||.|.|
T Consensus 2 qgslptf 8 (26)
T 2bp3_S 2 RGSLPTF 8 (26)
T ss_pred Cccccch
Confidence 6788865
No 8
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=9.08 E-value=3.3e+02 Score=17.26 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=18.3
Q ss_pred EEEEEEeeC--CcEEEEEEeccCcee
Q psy3260 70 ETEQVLFLD--DEVTSYVQTRGSVPL 93 (100)
Q Consensus 70 EtE~iv~~~--~~~~SfvqiRGSVPl 93 (100)
-.|++...+ +..++|..+.|..|+
T Consensus 56 ~~Erl~~~D~~~~~~~y~iv~g~~~~ 81 (146)
T 3f08_A 56 IIERLEVFNDKERYYTYSIMNAPFPV 81 (146)
T ss_dssp EEEEEEEEETTTTEEEEEEEECSSSE
T ss_pred EEEEEEEEeCCCCEEEEEEecCCCce
Confidence 457776553 589999999998885
No 9
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=8.25 E-value=1.4e+02 Score=15.27 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=5.5
Q ss_pred EEEeccC
Q psy3260 84 YVQTRGS 90 (100)
Q Consensus 84 fvqiRGS 90 (100)
++||||.
T Consensus 7 ~l~VrGR 13 (32)
T 3zy0_A 7 YLPVRGR 13 (32)
T ss_dssp EEEESSH
T ss_pred EEEEech
Confidence 6799985
No 10
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=7.52 E-value=2.4e+02 Score=20.28 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=21.4
Q ss_pred cCCCCCceeeeEEEEEEEe--eCCcEEEEEEeccCce
Q psy3260 58 GVNDDGHVANFVETEQVLF--LDDEVTSYVQTRGSVP 92 (100)
Q Consensus 58 Gid~~G~vaNfvEtE~iv~--~~~~~~SfvqiRGSVP 92 (100)
|.---|+-.|.--|++=+. .=+.--.++.++||||
T Consensus 159 gkkmaG~mG~~~~T~~Nl~I~~id~e~nlilvKGsVP 195 (211)
T 2ftc_C 159 GTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVP 195 (211)
T ss_pred CcccCCCCCCeeEEEeccEEEEECCCCCEEEEEecCc
Confidence 3344577778777776432 1112234689999998
Done!