Query psy3260
Match_columns 100
No_of_seqs 102 out of 582
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 20:32:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cuqa1 g.39.1.3 (A:43-74) Fou 33.8 4.1 0.0003 20.0 0.0 18 48-67 8-25 (32)
2 d1jova_ b.30.5.7 (A:) Hypothet 17.3 17 0.0012 24.3 0.6 12 86-97 68-79 (269)
3 d2nzwa1 c.87.1.11 (A:1-349) Al 14.7 22 0.0016 25.5 0.7 14 86-99 255-268 (349)
4 d1i8fa_ b.38.1.1 (A:) Archaeal 14.0 81 0.0059 16.9 3.0 34 57-91 30-63 (71)
5 d1biaa2 b.34.1.1 (A:271-317) B 13.6 23 0.0017 17.9 0.4 11 55-65 18-28 (47)
6 d2pifa1 d.382.1.1 (A:7-262) Un 13.3 24 0.0018 24.7 0.5 9 88-96 217-225 (256)
7 d2gycb1 b.43.3.2 (B:1-209) Rib 10.0 1E+02 0.0073 20.0 2.9 36 57-92 157-194 (209)
8 d2zjrb1 b.43.3.2 (B:1-205) Rib 8.9 55 0.004 21.6 1.2 34 58-92 153-189 (205)
9 d1mgqa_ b.38.1.1 (A:) Archaeal 8.5 1.2E+02 0.0087 16.1 2.4 34 57-90 34-67 (74)
10 d2j01e1 b.43.3.2 (E:1-205) Rib 8.3 43 0.0032 21.8 0.4 35 58-92 153-189 (205)
No 1
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.75 E-value=4.1 Score=20.04 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=12.9
Q ss_pred cccCccceeccCCCCCceee
Q psy3260 48 ERAGTRFNVRGVNDDGHVAN 67 (100)
Q Consensus 48 ~~~GtRy~~RGid~~G~vaN 67 (100)
.-||.||.+| |+.-+++|
T Consensus 8 ~LaGqrFTSr--de~pYC~~ 25 (32)
T d2cuqa1 8 PLAGQQFTSR--DEDPYCVA 25 (32)
T ss_dssp BCTTCCEEEC--SSSEEEHH
T ss_pred cccCCccccC--CCCccHHH
Confidence 3589999999 66655544
No 2
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]}
Probab=17.26 E-value=17 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=9.4
Q ss_pred EeccCceeeEEe
Q psy3260 86 QTRGSVPLFWEQ 97 (100)
Q Consensus 86 qiRGSVPlfW~q 97 (100)
=|||-||+.|=+
T Consensus 68 ~IRGGiPi~fP~ 79 (269)
T d1jova_ 68 AIRGGVPICYPW 79 (269)
T ss_dssp CCSBSCCEEBSS
T ss_pred cccCCcceeCcc
Confidence 489999998843
No 3
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]}
Probab=14.67 E-value=22 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.861 Sum_probs=11.4
Q ss_pred EeccCceeeEEeCC
Q psy3260 86 QTRGSVPLFWEQPG 99 (100)
Q Consensus 86 qiRGSVPlfW~q~g 99 (100)
...|+||++|..+.
T Consensus 255 ~~~g~iPIy~G~~~ 268 (349)
T d2nzwa1 255 YFSHTIPIYWGSPS 268 (349)
T ss_dssp HHTTCEEEEESCTT
T ss_pred HhCCeEEEEECCCc
Confidence 37899999998664
No 4
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=14.02 E-value=81 Score=16.88 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=17.7
Q ss_pred ccCCCCCceeeeEEEEEEEeeCCcEEEEEEeccCc
Q psy3260 57 RGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSV 91 (100)
Q Consensus 57 RGid~~G~vaNfvEtE~iv~~~~~~~SfvqiRGSV 91 (100)
++.|+..|+ -.-+++.....+..-...+-+||+-
T Consensus 30 ~~~D~~mNi-vL~~~~e~~~~~~~~~g~v~iRG~~ 63 (71)
T d1i8fa_ 30 RSFDQHVNL-LLEDAEEIIDGNVYKRGTMVVRGEN 63 (71)
T ss_dssp EEECTTCCE-EEEEEEEEETTEEEEEEEEEECGGG
T ss_pred EEECCCcce-EEccEEEEECCCEEEcceEEEeCCe
Confidence 456776665 2223333322223445668888873
No 5
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.62 E-value=23 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=9.2
Q ss_pred eeccCCCCCce
Q psy3260 55 NVRGVNDDGHV 65 (100)
Q Consensus 55 ~~RGid~~G~v 65 (100)
.++|||++|.-
T Consensus 18 ~a~gId~~G~L 28 (47)
T d1biaa2 18 ISRGIDKQGAL 28 (47)
T ss_dssp EEEEECTTSCE
T ss_pred EEeeECCCCcE
Confidence 47899999976
No 6
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=13.27 E-value=24 Score=24.66 Aligned_cols=9 Identities=56% Similarity=1.475 Sum_probs=5.5
Q ss_pred ccCceeeEE
Q psy3260 88 RGSVPLFWE 96 (100)
Q Consensus 88 RGSVPlfW~ 96 (100)
-|-||+||.
T Consensus 217 ~gevPVFWa 225 (256)
T d2pifa1 217 PGEVPVFWA 225 (256)
T ss_dssp TTEEEEEEE
T ss_pred CCCcceEee
Confidence 455777773
No 7
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=9.98 E-value=1e+02 Score=19.98 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=24.9
Q ss_pred ccCCCCCceeeeEEEEEEEee--CCcEEEEEEeccCce
Q psy3260 57 RGVNDDGHVANFVETEQVLFL--DDEVTSYVQTRGSVP 92 (100)
Q Consensus 57 RGid~~G~vaNfvEtE~iv~~--~~~~~SfvqiRGSVP 92 (100)
.|.---|+-.|.--||+=+.. =+.--.|+.++||||
T Consensus 157 ~g~~maG~mG~~~~T~~n~~I~~Id~~~n~i~vkGsVP 194 (209)
T d2gycb1 157 KGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVP 194 (209)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEEECCSSSSEEEEESCCS
T ss_pred eccccCCccCCceEEEecCEEEEEeCCCCEEEEEecCc
Confidence 455667888999888875432 111235899999998
No 8
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.88 E-value=55 Score=21.56 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=22.0
Q ss_pred cCCCCCceeeeEEEEEEEe---eCCcEEEEEEeccCce
Q psy3260 58 GVNDDGHVANFVETEQVLF---LDDEVTSYVQTRGSVP 92 (100)
Q Consensus 58 Gid~~G~vaNfvEtE~iv~---~~~~~~SfvqiRGSVP 92 (100)
|.---|+-.|.--|++=+. .+. --.++.++||||
T Consensus 153 GkkMaG~mG~~~~Tv~nl~V~~id~-e~nli~vkGsVP 189 (205)
T d2zjrb1 153 GKRMAGHMGMERVTVQNLEVVEIRA-GENLILVKGAIP 189 (205)
T ss_dssp TCCCCEEEECCEEEEEEEEEEEEET-TTTEEEEESCCS
T ss_pred CCccCCcccceEEEEeCCEEEEEeC-CCCEEEEeccCc
Confidence 4445688888888886433 211 013689999998
No 9
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.51 E-value=1.2e+02 Score=16.09 Aligned_cols=34 Identities=12% Similarity=-0.133 Sum_probs=17.5
Q ss_pred ccCCCCCceeeeEEEEEEEeeCCcEEEEEEeccC
Q psy3260 57 RGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGS 90 (100)
Q Consensus 57 RGid~~G~vaNfvEtE~iv~~~~~~~SfvqiRGS 90 (100)
+|.|...|+.=.--+|..--.+......+-+||+
T Consensus 34 ~~~D~~mNl~L~~~~e~~~~~~~~~~~~~~IRG~ 67 (74)
T d1mgqa_ 34 KSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGD 67 (74)
T ss_dssp EEECTTCCEEEEEEEEEETTEEEEEEEEEEECGG
T ss_pred EEECCCCCeEEeeEEEEeCCCeEeEcceEEEeCC
Confidence 4567777664332233211112245667888887
No 10
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]}
Probab=8.26 E-value=43 Score=21.80 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=21.0
Q ss_pred cCCCCCceeeeEEEEEEEeeC--CcEEEEEEeccCce
Q psy3260 58 GVNDDGHVANFVETEQVLFLD--DEVTSYVQTRGSVP 92 (100)
Q Consensus 58 Gid~~G~vaNfvEtE~iv~~~--~~~~SfvqiRGSVP 92 (100)
|.---|+-.|.-.||+=+..- +.--.++.++||||
T Consensus 153 g~km~G~mG~~~~T~~nl~i~~id~~~n~i~vkGsVP 189 (205)
T d2j01e1 153 GKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVP 189 (205)
T ss_dssp TCCCSEECSSCEEECCCEECCCCCTTTTCEECCSCCC
T ss_pred ecccCCccCCceEEEeCCEEEEEeCCCCEEEEEecCc
Confidence 444457777877777654321 11124678888888
Done!