RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3260
         (100 letters)



>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
           endoplasmic reticulum, hydrolase, membrane,
           transmembrane; 1.96A {Saccharomyces cerevisiae}
          Length = 505

 Score =  103 bits (257), Expect = 1e-27
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 4   IHLLRFSIDPSPWLLKIMCGSIEIRTVYVGHRQARAVIISRLSCERAGTRFNVRGVNDDG 63
            +          ++  ++ G  +     +        +I+R S  RAGTR+  RGV+ DG
Sbjct: 167 RNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDG 226

Query: 64  HVANFVETEQVLFLDDE------VTSYVQTRGSVPLFWEQPG 99
           +V NF ETEQ+L  ++       V S++QTRGSVP++W +  
Sbjct: 227 NVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEIN 268


>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer,
           kinetochore, mitosis, spindle checkpoint protein,
           nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
          Length = 123

 Score = 28.3 bits (63), Expect = 0.22
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 54  FNVRGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSVPLF 94
              +  +  G     +ETE    + + +  +++ + S+P F
Sbjct: 68  LIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAF 108


>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
           hydrolase-transcription regulator-Pro binding complex,
           acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
           PDB: 3mhh_A 3m99_A
          Length = 476

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 2   LHIHLLRFSIDPSPWLLKI 20
           L + L RF    +    K+
Sbjct: 363 LVLQLKRFEHLLNGSNRKL 381


>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
           hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
           PDB: 1nbf_A
          Length = 353

 Score = 25.6 bits (56), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 2   LHIHLLRFSIDPS 14
           LH+ L+RF  DP 
Sbjct: 195 LHLQLMRFMYDPQ 207


>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
           deubiquitinating enzyme, substrate recognition; 3.20A
           {Homo sapiens}
          Length = 522

 Score = 25.3 bits (55), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 2   LHIHLLRFSIDPS 14
           LH+ L+RF  DP 
Sbjct: 364 LHLQLMRFMYDPQ 376


>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
           hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
           2gk7_A 2xzo_A* 2xzp_A
          Length = 624

 Score = 24.4 bits (53), Expect = 8.9
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 17/66 (25%)

Query: 4   IHLLRFSIDPSPWLLKIMCGSIEIRTV--YVGHRQARAVIIS--R---------LSCERA 50
              L   +  S  L   +   +EI +V  + G R+   +I+S  R         L+  R 
Sbjct: 510 RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG-REKDFIILSCVRANEHQGIGFLNDPR- 567

Query: 51  GTRFNV 56
             R NV
Sbjct: 568 --RLNV 571


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,602,013
Number of extensions: 83422
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)