BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3261
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82922|RT29_BOVIN 28S ribosomal protein S29, mitochondrial OS=Bos taurus GN=DAP3 PE=1
SV=3
Length = 397
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 203/346 (58%), Gaps = 10/346 (2%)
Query: 1 TKHSKQDLYKFYTLPDEVRSAIFELGGITRVFNEQTQIFNESSILIRNCMLELVGYLKSM 60
KH +Q + + Y + + +F G R F Q + FNE+ +++R LEL+ YLK+
Sbjct: 56 AKHGEQHVGQHYNISIQELKTVFPHGLPPR-FVMQVKTFNEACLMVRKPALELLHYLKN- 113
Query: 61 TNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTK 120
TNF P+ R+VLYGE G GK+++L + + + + ++L++HIP W +++ S
Sbjct: 114 TNFAHPAVRYVLYGEKGTGKTLSLCHIIHFCAKQDWLILHIPDAHLWVKNCRDLLQSTYN 173
Query: 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITR 180
+ D ++A++WL++F+ N ++L ++ +YVW+ RE +E PLA ++E GI R
Sbjct: 174 KQRFDQPLEASIWLKNFKTANERFLS--QIKVQDKYVWNKRESTEKGSPLAEVVEQGIMR 231
Query: 181 VKYASDVVDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTR 240
V+ A+D V ++ E+K+ S+ GV R V VDG N+ + +T K EDKS + P + L
Sbjct: 232 VRNATDAVGIVLKELKRQSSLGVFRLLVAVDGVNALWG-RTTLKREDKSPITPEELALIY 290
Query: 241 SVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDE 300
++ +V++DW GAIVL +S +L R+++LP +L K GF+++DPF+PI V N +
Sbjct: 291 NLRKMVKNDWQGGAIVLTVSQTGSLFKPRKAYLPQELLGKEGFDTLDPFIPILVSNYNPK 350
Query: 301 EFHNLLNLYESKKWLQ-----TSEGREEIAFLTKRVPQKMYEFCSF 341
EF + Y WLQ T EG++E+ FL+ R P + C++
Sbjct: 351 EFEGCIQYYLENNWLQHEKAHTEEGKKELLFLSNRNPGLLERLCAY 396
>sp|Q9ER88|RT29_MOUSE 28S ribosomal protein S29, mitochondrial OS=Mus musculus GN=Dap3
PE=2 SV=1
Length = 391
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 204/345 (59%), Gaps = 10/345 (2%)
Query: 1 TKHSKQDLYKFYTLPDEVRSAIFELGGITRVFNEQTQIFNESSILIRNCMLELVGYLKSM 60
KH +Q + Y++P + +F G R + Q + F E+ +++R LEL+GYLK+
Sbjct: 50 AKHGEQHEGQHYSIPLQDLKTVFPHGLPPR-YMMQVKTFGEACLMVRKPALELLGYLKN- 107
Query: 61 TNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTK 120
TNF P+ R++LYGE G GK+++L +A+ + +++L++HIP W +E+ S
Sbjct: 108 TNFAHPAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHN 167
Query: 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITR 180
+ D ++A+ WL++F+ N ++L ++ ++YVW+ RE +E PL ++E G+TR
Sbjct: 168 KQRFDQPLEASTWLKNFKTTNERFLS--QIKVQEKYVWNKRESTEKGSPLGEVVEQGLTR 225
Query: 181 VKYASDVVDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTR 240
V+ A+D V V+ E+K S G+ V VDG N+ + +T K ED++ + P ++L
Sbjct: 226 VRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWG-RTTLKKEDRTLIAPEELSLVH 284
Query: 241 SVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDE 300
++ +V++DW+ GAIVL+LS +L R ++LP +L K GF +++PF+PI +P N +
Sbjct: 285 NLRKMVKNDWHGGAIVLSLSQTGSLFKSRTAYLPHELLGKEGFNALEPFLPILIPNYNPK 344
Query: 301 EFHNLLNLYESKKWLQ-----TSEGREEIAFLTKRVPQKMYEFCS 340
EF + Y WLQ T EGR+E+ FL+ P+++ C+
Sbjct: 345 EFESSFQYYLENNWLQHEKASTEEGRKELRFLSNCNPEQLERLCA 389
>sp|P51398|RT29_HUMAN 28S ribosomal protein S29, mitochondrial OS=Homo sapiens GN=DAP3
PE=1 SV=1
Length = 398
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 201/346 (58%), Gaps = 10/346 (2%)
Query: 1 TKHSKQDLYKFYTLPDEVRSAIFELGGITRVFNEQTQIFNESSILIRNCMLELVGYLKSM 60
KH Q + Y + + +F G R F Q + F+E+ +++R LEL+ YLK+
Sbjct: 57 AKHGDQHEGQHYNISPQDLETVFPHGLPPR-FVMQVKTFSEACLMVRKPALELLHYLKN- 114
Query: 61 TNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTK 120
T+F P+ R++LYGE G GK+++L + + + + ++L++HIP W +++ S
Sbjct: 115 TSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYN 174
Query: 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITR 180
+ D ++A+ WL++F+ N ++L ++ ++YVW+ RE +E PL ++E GITR
Sbjct: 175 KQRFDQPLEASTWLKNFKTTNERFLN--QIKVQEKYVWNKRESTEKGSPLGEVVEQGITR 232
Query: 181 VKYASDVVDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTR 240
V+ A+D V ++ E+K+ S+ G+ V VDG N+ + +T K EDKS + P + L
Sbjct: 233 VRNATDAVGIVLKELKRQSSLGMFHLLVAVDGINALWG-RTTLKREDKSPIAPEELALVH 291
Query: 241 SVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDE 300
++ ++++DW+ GAIV ALS +L R+++LP +L K GF+++DPF+PI V N +
Sbjct: 292 NLRKMMKNDWHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPK 351
Query: 301 EFHNLLNLYESKKWLQ-----TSEGREEIAFLTKRVPQKMYEFCSF 341
EF + + Y WLQ T EG++E+ FL+ P + C++
Sbjct: 352 EFESCIQYYLENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAY 397
>sp|O59677|RT23_SCHPO 37S ribosomal protein S23, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rsm23 PE=3 SV=1
Length = 476
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 10 KFYTLPDEVRSAIFELGGITRVFNEQTQIFNESSILIRNCMLELVGYLKSMTNFDRPSPR 69
K + +P+E+ + + G + + + F +S+L R ELV L+ + R
Sbjct: 137 KMFKIPEELLNKLNGFGALEKQ-KKSFSFFTSASLLHRKITTELVNVLQRSKDQGTKDGR 195
Query: 70 FVLYGEHGVGKSMALVYALQYA 91
F+L G G G+S+AL+ A +A
Sbjct: 196 FLLDGAPGSGRSIALIQAELFA 217
>sp|Q01163|RT23_YEAST 37S ribosomal protein S23, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RSM23 PE=1
SV=3
Length = 450
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 137/328 (41%), Gaps = 74/328 (22%)
Query: 32 FNEQTQIFNESSILIRNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYA 91
FNE +F + L+R +LK + + P +F++ GE GVGK++ L A YA
Sbjct: 115 FNE---LFQKPVCLVREDATN--SFLKKLVS--HPVKKFIITGEPGVGKTVLLSQAHAYA 167
Query: 92 HENNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNID-------AAMWLRHFQKQNTKW 144
++ ++++I +YP+ L G D + D M+L+ ++ K
Sbjct: 168 VDSKQIIINI-------SYPE-----LFLNGRNDFSYDDDLKLFIQPMYLKKLIRKILKA 215
Query: 145 LEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLFTE---------- 194
DP L S E + + S AN P A ++ +T K + V+D+L
Sbjct: 216 -NDPALLKSIE-LSKDYKFSNAN-PKNASVKPFVTLNKTKNTVLDLLSVMTHPHNRGKLM 272
Query: 195 ---IKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPS-RVTLTRSVINLV--QS 248
I +LS + VD ++ + ++K + S + + + +++++ ++
Sbjct: 273 KAIIDELSVQSKVPIMFTVDNFSKVLTTAYSAYRNTENKQIYSLDLQMGKLMMDIISGET 332
Query: 249 DWNNG--AIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVP--------------- 291
+ NG + +LA+S DR LP+ + G +DP+V
Sbjct: 333 KFANGESSTILAISGV----DRTNKTLPVAL----GKIPVDPYVTRYHYEPKFVELLQKG 384
Query: 292 ----IHVPELNDEEFHNLLNLYESKKWL 315
VP+LN +E + L++ Y+ L
Sbjct: 385 NVTEFEVPKLNKQEVNELIDYYKQSNVL 412
>sp|P34840|COX2_ANOGA Cytochrome c oxidase subunit 2 OS=Anopheles gambiae GN=COII PE=3
SV=1
Length = 228
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 34 EQTQIFNESSILIRNCMLELVGYLKSMTNFDRPSPRFVLYGE 75
EQ F++ ++LI + LVGY+ M +F++ + RF+L+G+
Sbjct: 18 EQLNFFHDHTLLILTMITILVGYIMGMLSFNKFTNRFLLHGQ 59
>sp|Q9HHR1|CDC65_HALSA Cell division control protein 6 homolog 5 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=cdc6-5 PE=3 SV=2
Length = 428
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 14 LPDEVRSAIFELGGITRVFNEQTQIFNESSILIRNCMLE-LVGYLKSMTNFDRPSPRFVL 72
L D+ +++F + R E I +E I+ R+ LE +V +LK +RP P +L
Sbjct: 2 LHDDGDASVF----VNRDLVEPDTIIDEERIVGRDEQLESVVSFLKPTLQGNRP-PNMLL 56
Query: 73 YGEHGVGKSMALVYALQ 89
YG G GKS+ + Q
Sbjct: 57 YGPAGTGKSLIIGAVTQ 73
>sp|P33505|COX2_ANOQU Cytochrome c oxidase subunit 2 OS=Anopheles quadrimaculatus
GN=COXII PE=3 SV=1
Length = 228
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 34 EQTQIFNESSILIRNCMLELVGYLKSMTNFDRPSPRFVLYGE 75
EQ F++ ++LI + LVGY+ M F++ + R++L+G+
Sbjct: 18 EQLNFFHDHTLLILTMITILVGYIMGMLMFNQFTNRYLLHGQ 59
>sp|A8Z4X9|ATKB_STAAT Potassium-transporting ATPase B chain OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=kdpB PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|A6QIS1|ATKB_STAAE Potassium-transporting ATPase B chain OS=Staphylococcus aureus
(strain Newman) GN=kdpB PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|Q5HEC4|ATKB_STAAC Potassium-transporting ATPase B chain OS=Staphylococcus aureus
(strain COL) GN=kdpB PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|P63684|ATKB2_STAAN Potassium-transporting ATPase B chain 2 OS=Staphylococcus aureus
(strain N315) GN=kdpB2 PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|P63683|ATKB2_STAAM Potassium-transporting ATPase B chain 2 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=kdpB2 PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|Q8NVI2|ATKB_STAAW Potassium-transporting ATPase B chain OS=Staphylococcus aureus
(strain MW2) GN=kdpB PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|Q6G7N3|ATKB_STAAS Potassium-transporting ATPase B chain OS=Staphylococcus aureus
(strain MSSA476) GN=kdpB PE=3 SV=1
Length = 675
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 164 SEANIPLAALIEHGITRVKYASDVV-DVL---FTEIKKLSTEGV---------CRTFVCV 210
S+ PL + + + V Y DV+ D L FTE++K+ E V T
Sbjct: 420 SKGGTPLIVIENNVMLGVIYLKDVIKDGLVERFTELRKMGIETVMCTGDNALTAATIAKE 479
Query: 211 DGYNSFFAEKTNCKPEDKSKVL 232
G + F AE CKPEDK KV+
Sbjct: 480 AGVDRFVAE---CKPEDKIKVI 498
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 52 ELVGYLKSMTNFDRPSPRFVLYGEHGVGK---SMALVYAL 88
EL +LKS+++ R P +LYG +G GK MAL+ ++
Sbjct: 21 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
>sp|P41467|Y066_NPVAC Uncharacterized 94.0 kDa protein in POL-LEF3 intergenic region
OS=Autographa californica nuclear polyhedrosis virus
PE=4 SV=1
Length = 808
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 214 NSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHL 273
N E K E+ + L V +T +V LVQ S + N+ R+E +
Sbjct: 631 NRILKENYKVKVENVNAELLESVAVTSAVSALVQQ--------YERSEKQNVKLRQEFEI 682
Query: 274 PLYMLKK------AGFESIDPFV---PIHVPELNDEEFHNLLNLYE--SKKW--LQTSEG 320
L L++ FESI F+ P LNDE F NL Y+ S K+ L+T++
Sbjct: 683 KLNDLQRLLEQNQTDFESISEFISRDPAFNRNLNDERFQNLRQQYDEMSSKYSALETTKI 742
Query: 321 REEIAFLTKRVPQKM 335
+E + + V +M
Sbjct: 743 KEMESIADQAVKSEM 757
>sp|Q926K7|ATKB2_LISIN Potassium-transporting ATPase B chain 2 OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=kdpB2 PE=3 SV=1
Length = 686
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 169 PLAALIEHGITRVKYASDVVDVLFTE-IKKLSTEGVCRTFVCVD-------------GYN 214
PL E I V Y D + E ++L + G+ +T +C G +
Sbjct: 430 PLVVCAEEKIYGVIYLKDTIKPGLVERFERLRSIGI-KTIMCTGDNPLTAATIAHEAGVD 488
Query: 215 SFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLA 258
SF AE CKPEDK KV+ + ++S + + D N A LA
Sbjct: 489 SFIAE---CKPEDKIKVI--KDAQSKSKVVAMTGDGTNDAPALA 527
>sp|Q8MT06|GNL3_DROME Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila
melanogaster GN=ns1 PE=1 SV=2
Length = 581
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 180 RVKYASDVVDVLFTEIKKLSTEGVCRTFVCV--DGYNSFFAEKTNCKPEDKSKVLPSRVT 237
RV D + + +K+ S E C + D + FFA+K + K +P V
Sbjct: 340 RVGDVKDPFTIAESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVA 399
Query: 238 LTRSVINLVQSDWNNGAIVLALSP 261
RSV+N DWN G I P
Sbjct: 400 AARSVLN----DWNTGKIKYCTQP 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,822,304
Number of Sequences: 539616
Number of extensions: 5196795
Number of successful extensions: 13088
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13065
Number of HSP's gapped (non-prelim): 22
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)