Query psy3261
Match_columns 342
No_of_seqs 128 out of 256
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:33:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1u_A Cell division control p 98.9 1.1E-07 3.6E-12 90.6 18.8 211 46-340 23-250 (387)
2 1njg_A DNA polymerase III subu 98.8 1.1E-07 3.7E-12 83.6 15.4 104 203-340 125-229 (250)
3 2qby_A CDC6 homolog 1, cell di 98.8 1E-07 3.5E-12 90.5 15.8 213 45-340 23-246 (386)
4 2qby_B CDC6 homolog 3, cell di 98.7 6.6E-07 2.2E-11 85.4 19.6 208 45-340 23-246 (384)
5 1fnn_A CDC6P, cell division co 98.7 4.1E-07 1.4E-11 86.8 17.5 208 45-340 20-248 (389)
6 1w5s_A Origin recognition comp 98.7 5.3E-07 1.8E-11 86.8 17.3 214 44-340 24-267 (412)
7 2qen_A Walker-type ATPase; unk 98.7 8.1E-07 2.8E-11 83.2 17.9 49 291-339 197-246 (350)
8 2chg_A Replication factor C sm 98.7 6.8E-07 2.3E-11 77.6 15.4 103 203-339 101-204 (226)
9 2fna_A Conserved hypothetical 98.6 1.3E-06 4.3E-11 82.0 16.6 123 188-339 124-250 (357)
10 3bos_A Putative DNA replicatio 98.4 3.2E-06 1.1E-10 74.7 12.4 49 291-339 168-217 (242)
11 3h4m_A Proteasome-activating n 98.4 1.5E-05 5.3E-10 73.0 17.3 119 203-340 109-232 (285)
12 3uk6_A RUVB-like 2; hexameric 98.4 2.2E-05 7.5E-10 74.6 18.4 109 205-340 190-304 (368)
13 4b4t_J 26S protease regulatory 98.3 7.5E-05 2.6E-09 72.9 20.0 122 203-340 240-363 (405)
14 3te6_A Regulatory protein SIR3 98.3 2.1E-05 7.3E-10 74.5 15.7 55 47-102 25-87 (318)
15 1xwi_A SKD1 protein; VPS4B, AA 98.3 8.8E-05 3E-09 70.0 20.0 117 203-340 104-224 (322)
16 1jr3_A DNA polymerase III subu 98.2 1.7E-05 5.9E-10 75.2 14.8 103 203-339 118-221 (373)
17 1sxj_B Activator 1 37 kDa subu 98.2 1.2E-05 4.1E-10 74.5 13.2 103 203-339 106-209 (323)
18 3eie_A Vacuolar protein sortin 98.2 0.00012 3.9E-09 69.0 19.4 117 203-340 109-229 (322)
19 4b4t_H 26S protease regulatory 98.2 0.00013 4.4E-09 72.4 19.4 122 203-340 301-424 (467)
20 1iqp_A RFCS; clamp loader, ext 98.2 5.7E-05 1.9E-09 70.0 16.1 103 203-339 109-212 (327)
21 2chq_A Replication factor C sm 98.1 4.1E-05 1.4E-09 70.7 14.8 103 203-339 101-204 (319)
22 4b4t_L 26S protease subunit RP 98.1 7E-05 2.4E-09 73.9 16.8 121 203-340 273-396 (437)
23 4b4t_M 26S protease regulatory 98.1 2.7E-05 9.2E-10 76.8 13.6 121 203-340 273-396 (434)
24 3pfi_A Holliday junction ATP-d 98.1 0.00012 4.2E-09 68.7 17.0 49 291-339 178-227 (338)
25 1hqc_A RUVB; extended AAA-ATPa 98.1 5.3E-05 1.8E-09 70.5 14.2 49 291-339 162-211 (324)
26 4b4t_K 26S protease regulatory 98.0 0.00021 7.2E-09 70.3 18.1 121 203-340 264-388 (428)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00029 9.8E-09 63.3 17.8 123 203-340 97-223 (262)
28 1sxj_E Activator 1 40 kDa subu 98.0 0.00018 6.1E-09 67.8 16.9 102 204-339 134-237 (354)
29 2qp9_X Vacuolar protein sortin 98.0 0.00015 5.3E-09 69.3 16.5 117 203-340 142-262 (355)
30 1lv7_A FTSH; alpha/beta domain 98.0 0.00053 1.8E-08 61.9 19.0 121 203-340 103-226 (257)
31 4b4t_I 26S protease regulatory 98.0 0.00017 5.9E-09 70.8 16.7 122 203-340 274-397 (437)
32 2zan_A Vacuolar protein sortin 98.0 0.00019 6.7E-09 70.7 17.1 117 203-340 226-346 (444)
33 1l8q_A Chromosomal replication 97.9 0.00011 3.9E-09 68.7 13.4 37 66-102 36-72 (324)
34 2c9o_A RUVB-like 1; hexameric 97.9 0.00037 1.3E-08 68.8 17.4 106 205-339 296-410 (456)
35 1a5t_A Delta prime, HOLB; zinc 97.9 0.00045 1.5E-08 65.3 17.0 117 185-340 90-206 (334)
36 3d8b_A Fidgetin-like protein 1 97.9 0.00061 2.1E-08 65.1 17.6 116 203-340 175-296 (357)
37 3vfd_A Spastin; ATPase, microt 97.8 0.00068 2.3E-08 65.3 16.8 115 204-340 207-327 (389)
38 3syl_A Protein CBBX; photosynt 97.8 0.00027 9.3E-09 65.3 13.3 115 206-339 132-255 (309)
39 3cf0_A Transitional endoplasmi 97.8 0.001 3.5E-08 61.8 17.2 121 203-340 107-230 (301)
40 1sxj_D Activator 1 41 kDa subu 97.8 0.00042 1.4E-08 65.0 14.5 102 204-339 133-235 (353)
41 3pvs_A Replication-associated 97.8 0.00073 2.5E-08 66.8 16.5 103 203-339 105-215 (447)
42 3b9p_A CG5977-PA, isoform A; A 97.7 0.0028 9.7E-08 58.1 18.4 116 204-340 113-234 (297)
43 1ofh_A ATP-dependent HSL prote 97.7 0.00079 2.7E-08 61.8 14.4 120 205-340 117-267 (310)
44 2z4s_A Chromosomal replication 97.6 0.00045 1.5E-08 68.1 12.8 48 292-339 258-306 (440)
45 1sxj_A Activator 1 95 kDa subu 97.6 0.0005 1.7E-08 69.0 13.4 105 203-339 147-252 (516)
46 3hu3_A Transitional endoplasmi 97.6 0.0015 5.3E-08 65.2 16.8 119 203-340 296-416 (489)
47 3u61_B DNA polymerase accessor 97.5 0.00085 2.9E-08 62.6 12.9 103 204-339 105-216 (324)
48 2ce7_A Cell division protein F 97.5 0.0016 5.4E-08 64.9 15.5 122 203-340 107-230 (476)
49 1ixz_A ATP-dependent metallopr 97.5 0.0035 1.2E-07 56.3 16.0 122 203-340 107-230 (254)
50 1iy2_A ATP-dependent metallopr 97.5 0.0061 2.1E-07 55.6 17.9 122 203-340 131-254 (278)
51 1sxj_C Activator 1 40 kDa subu 97.5 0.0037 1.3E-07 58.8 16.7 101 205-339 111-212 (340)
52 1d2n_A N-ethylmaleimide-sensit 97.5 0.005 1.7E-07 55.9 16.7 111 203-339 123-242 (272)
53 3cf2_A TER ATPase, transitiona 97.4 0.002 6.7E-08 68.2 14.8 118 203-340 296-416 (806)
54 2x8a_A Nuclear valosin-contain 97.3 0.017 5.7E-07 53.0 18.2 119 203-340 102-227 (274)
55 1z6t_A APAF-1, apoptotic prote 97.3 0.0053 1.8E-07 61.9 15.9 45 295-339 284-328 (591)
56 2dhr_A FTSH; AAA+ protein, hex 97.3 0.007 2.4E-07 60.6 16.4 122 203-340 122-245 (499)
57 3ec2_A DNA replication protein 97.2 0.00028 9.7E-09 60.1 4.4 35 66-100 37-72 (180)
58 1qvr_A CLPB protein; coiled co 97.1 0.0049 1.7E-07 65.5 14.2 95 188-310 251-345 (854)
59 1jbk_A CLPB protein; beta barr 97.0 0.0015 5.2E-08 54.7 7.1 44 45-93 25-69 (195)
60 2a5y_B CED-4; apoptosis; HET: 97.0 0.015 5E-07 58.6 15.6 49 291-339 287-337 (549)
61 2p65_A Hypothetical protein PF 97.0 0.0013 4.3E-08 55.2 6.6 44 45-93 25-69 (187)
62 2w58_A DNAI, primosome compone 96.9 0.0018 6.1E-08 56.0 6.8 34 68-101 55-88 (202)
63 3cf2_A TER ATPase, transitiona 96.8 0.0058 2E-07 64.6 11.1 132 188-340 559-692 (806)
64 2orw_A Thymidine kinase; TMTK, 96.7 0.0018 6.1E-08 56.1 5.5 37 67-103 3-40 (184)
65 3sfz_A APAF-1, apoptotic pepti 96.7 0.048 1.6E-06 59.1 17.8 49 291-339 279-328 (1249)
66 2kjq_A DNAA-related protein; s 96.5 0.0018 6.3E-08 54.0 4.3 48 50-102 24-71 (149)
67 3uie_A Adenylyl-sulfate kinase 96.4 0.0026 8.8E-08 55.2 4.7 38 65-102 23-60 (200)
68 2b8t_A Thymidine kinase; deoxy 96.3 0.0032 1.1E-07 56.4 4.7 37 65-101 10-46 (223)
69 2qgz_A Helicase loader, putati 96.2 0.0072 2.5E-07 56.5 6.8 36 66-101 151-187 (308)
70 3n70_A Transport activator; si 96.1 0.0037 1.3E-07 51.4 3.9 42 49-93 9-50 (145)
71 1knq_A Gluconate kinase; ALFA/ 96.0 0.0076 2.6E-07 50.6 5.3 34 65-101 6-39 (175)
72 2dr3_A UPF0273 protein PH0284; 95.9 0.0069 2.4E-07 53.4 4.9 37 65-101 21-57 (247)
73 2yvu_A Probable adenylyl-sulfa 95.9 0.008 2.7E-07 51.2 5.1 38 64-101 10-47 (186)
74 3io5_A Recombination and repai 95.9 0.0061 2.1E-07 57.7 4.4 37 65-102 27-65 (333)
75 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0065 2.2E-07 52.9 4.3 37 65-101 21-57 (235)
76 3hr8_A Protein RECA; alpha and 95.8 0.0069 2.3E-07 58.1 4.6 37 65-101 59-95 (356)
77 2zts_A Putative uncharacterize 95.7 0.0074 2.5E-07 53.3 4.3 37 65-101 28-65 (251)
78 2v9p_A Replication protein E1; 95.7 0.0088 3E-07 56.1 4.8 43 65-109 124-166 (305)
79 4eun_A Thermoresistant glucoki 95.7 0.011 3.9E-07 51.0 5.1 33 65-100 27-59 (200)
80 2z0h_A DTMP kinase, thymidylat 95.7 0.011 3.7E-07 50.4 4.9 33 69-101 2-34 (197)
81 3bh0_A DNAB-like replicative h 95.7 0.012 4.1E-07 55.1 5.6 38 65-102 66-103 (315)
82 3lw7_A Adenylate kinase relate 95.6 0.0084 2.9E-07 49.5 4.0 29 69-101 3-31 (179)
83 2bjv_A PSP operon transcriptio 95.6 0.011 3.7E-07 53.3 4.9 50 49-101 14-63 (265)
84 2zr9_A Protein RECA, recombina 95.6 0.011 3.6E-07 56.5 5.0 38 65-102 59-96 (349)
85 1tue_A Replication protein E1; 95.6 0.01 3.4E-07 52.8 4.4 40 51-90 42-81 (212)
86 1nks_A Adenylate kinase; therm 95.5 0.011 3.9E-07 49.9 4.4 34 69-102 3-36 (194)
87 1vt4_I APAF-1 related killer D 95.5 0.32 1.1E-05 53.0 16.3 42 45-90 131-173 (1221)
88 2iut_A DNA translocase FTSK; n 95.4 0.46 1.6E-05 48.2 16.5 68 67-137 214-286 (574)
89 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.012 4.1E-07 53.4 4.5 36 67-102 4-39 (260)
90 1ly1_A Polynucleotide kinase; 95.4 0.013 4.5E-07 48.9 4.4 32 68-101 3-34 (181)
91 1cr0_A DNA primase/helicase; R 95.4 0.015 5.3E-07 53.3 5.1 37 65-101 33-70 (296)
92 2ehv_A Hypothetical protein PH 95.4 0.012 4.2E-07 51.9 4.3 28 65-92 28-55 (251)
93 2pez_A Bifunctional 3'-phospho 95.3 0.016 5.4E-07 49.0 4.6 36 66-101 4-39 (179)
94 1kht_A Adenylate kinase; phosp 95.3 0.019 6.3E-07 48.5 5.1 29 67-95 3-31 (192)
95 1kag_A SKI, shikimate kinase I 95.3 0.016 5.6E-07 48.3 4.6 30 67-99 4-33 (173)
96 1zp6_A Hypothetical protein AT 95.3 0.0091 3.1E-07 50.7 3.1 35 65-100 7-41 (191)
97 2cvh_A DNA repair and recombin 95.3 0.015 5.1E-07 50.3 4.5 34 65-101 18-51 (220)
98 4b3f_X DNA-binding protein smu 95.3 0.011 3.7E-07 60.9 4.1 34 68-101 206-239 (646)
99 2pbr_A DTMP kinase, thymidylat 95.2 0.016 5.4E-07 49.1 4.5 33 69-101 2-34 (195)
100 1rz3_A Hypothetical protein rb 95.2 0.033 1.1E-06 48.2 6.6 45 50-96 7-51 (201)
101 3tlx_A Adenylate kinase 2; str 95.2 0.019 6.6E-07 51.5 4.9 34 65-101 27-60 (243)
102 3t15_A Ribulose bisphosphate c 95.1 0.02 6.8E-07 52.9 5.0 27 65-91 34-60 (293)
103 1xx6_A Thymidine kinase; NESG, 95.1 0.025 8.5E-07 49.3 5.2 37 65-101 6-42 (191)
104 3upu_A ATP-dependent DNA helic 95.0 0.039 1.3E-06 54.2 7.2 35 69-103 47-83 (459)
105 1u0j_A DNA replication protein 95.0 0.027 9.3E-07 51.8 5.5 38 52-89 88-126 (267)
106 1u94_A RECA protein, recombina 95.0 0.022 7.6E-07 54.5 5.0 38 65-102 61-98 (356)
107 1ye8_A Protein THEP1, hypothet 95.0 0.013 4.6E-07 50.2 3.2 23 69-91 2-24 (178)
108 2rhm_A Putative kinase; P-loop 95.0 0.02 6.7E-07 48.6 4.2 33 66-101 4-36 (193)
109 3tr0_A Guanylate kinase, GMP k 94.9 0.02 6.8E-07 49.1 4.1 25 66-90 6-30 (205)
110 3bgw_A DNAB-like replicative h 94.9 0.029 9.9E-07 55.2 5.7 38 65-102 195-232 (444)
111 3c8u_A Fructokinase; YP_612366 94.8 0.029 9.8E-07 48.8 4.9 32 64-95 19-50 (208)
112 1w4r_A Thymidine kinase; type 94.8 0.025 8.4E-07 49.7 4.4 37 65-101 18-54 (195)
113 1n0w_A DNA repair protein RAD5 94.8 0.028 9.4E-07 49.4 4.8 28 65-92 22-49 (243)
114 1kgd_A CASK, peripheral plasma 94.8 0.021 7.2E-07 48.6 3.9 25 66-90 4-28 (180)
115 4a1f_A DNAB helicase, replicat 94.7 0.033 1.1E-06 52.9 5.6 38 65-102 44-81 (338)
116 2bdt_A BH3686; alpha-beta prot 94.7 0.029 9.7E-07 47.7 4.6 30 69-100 4-33 (189)
117 1lvg_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 50.2 3.1 26 66-91 3-28 (198)
118 1y63_A LMAJ004144AAA protein; 94.7 0.033 1.1E-06 47.4 5.0 34 66-101 9-42 (184)
119 3t61_A Gluconokinase; PSI-biol 94.7 0.029 9.8E-07 48.3 4.6 32 67-101 18-49 (202)
120 2if2_A Dephospho-COA kinase; a 94.6 0.025 8.6E-07 48.6 4.0 31 69-103 3-33 (204)
121 3vaa_A Shikimate kinase, SK; s 94.6 0.03 1E-06 48.2 4.5 33 65-100 23-55 (199)
122 1xp8_A RECA protein, recombina 94.6 0.031 1.1E-06 53.7 5.0 38 65-102 72-109 (366)
123 1nlf_A Regulatory protein REPA 94.6 0.031 1.1E-06 50.9 4.8 28 65-92 28-55 (279)
124 1xjc_A MOBB protein homolog; s 94.6 0.036 1.2E-06 47.4 4.9 35 67-101 4-38 (169)
125 4a74_A DNA repair and recombin 94.5 0.03 1E-06 48.6 4.5 28 65-92 23-50 (231)
126 2z43_A DNA repair and recombin 94.5 0.033 1.1E-06 52.2 4.9 37 65-101 105-147 (324)
127 1ojl_A Transcriptional regulat 94.5 0.024 8.3E-07 52.7 3.9 44 49-95 10-53 (304)
128 1gvn_B Zeta; postsegregational 94.5 0.044 1.5E-06 50.6 5.6 35 65-100 31-65 (287)
129 3fb4_A Adenylate kinase; psych 94.5 0.027 9.2E-07 48.9 3.9 30 69-101 2-31 (216)
130 3co5_A Putative two-component 94.5 0.017 5.7E-07 47.4 2.5 34 51-87 14-47 (143)
131 3jvv_A Twitching mobility prot 94.5 0.048 1.6E-06 52.1 6.0 39 66-104 122-161 (356)
132 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.7E-07 48.2 3.6 32 66-101 7-38 (203)
133 2c95_A Adenylate kinase 1; tra 94.4 0.042 1.4E-06 46.6 5.0 33 66-101 8-40 (196)
134 2r8r_A Sensor protein; KDPD, P 94.4 0.037 1.3E-06 49.7 4.6 33 67-99 6-38 (228)
135 1aky_A Adenylate kinase; ATP:A 94.4 0.044 1.5E-06 47.8 5.1 34 65-101 2-35 (220)
136 4fcw_A Chaperone protein CLPB; 94.3 0.031 1.1E-06 51.2 4.2 30 66-95 46-75 (311)
137 3cm0_A Adenylate kinase; ATP-b 94.3 0.033 1.1E-06 47.0 4.1 30 67-99 4-33 (186)
138 2j41_A Guanylate kinase; GMP, 94.3 0.03 1E-06 48.0 3.7 26 66-91 5-30 (207)
139 3dl0_A Adenylate kinase; phosp 94.3 0.027 9.3E-07 48.9 3.5 30 69-101 2-31 (216)
140 3kb2_A SPBC2 prophage-derived 94.2 0.028 9.4E-07 46.6 3.4 30 69-101 3-32 (173)
141 4gp7_A Metallophosphoesterase; 94.2 0.021 7.2E-07 48.2 2.6 21 66-86 8-28 (171)
142 2i3b_A HCR-ntpase, human cance 94.2 0.026 8.9E-07 49.0 3.2 28 68-95 2-29 (189)
143 1gtv_A TMK, thymidylate kinase 94.1 0.022 7.4E-07 49.2 2.6 34 69-102 2-35 (214)
144 3iij_A Coilin-interacting nucl 94.1 0.049 1.7E-06 45.9 4.8 33 66-101 10-42 (180)
145 1nn5_A Similar to deoxythymidy 94.1 0.055 1.9E-06 46.5 5.1 34 66-99 8-41 (215)
146 1jjv_A Dephospho-COA kinase; P 94.1 0.029 9.9E-07 48.4 3.3 29 69-101 4-32 (206)
147 2r6a_A DNAB helicase, replicat 94.1 0.044 1.5E-06 53.8 5.0 37 65-101 201-238 (454)
148 2eyu_A Twitching motility prot 94.1 0.053 1.8E-06 49.4 5.2 35 65-99 23-59 (261)
149 1tev_A UMP-CMP kinase; ploop, 94.1 0.049 1.7E-06 45.9 4.6 32 67-101 3-34 (196)
150 3e1s_A Exodeoxyribonuclease V, 94.0 0.045 1.5E-06 55.6 5.1 38 67-104 204-242 (574)
151 3p32_A Probable GTPase RV1496/ 94.0 0.074 2.5E-06 50.5 6.3 34 65-98 77-110 (355)
152 3asz_A Uridine kinase; cytidin 94.0 0.028 9.7E-07 48.6 3.1 26 65-90 4-29 (211)
153 3hws_A ATP-dependent CLP prote 94.0 0.05 1.7E-06 51.5 5.0 25 66-90 50-74 (363)
154 1v5w_A DMC1, meiotic recombina 93.9 0.047 1.6E-06 51.6 4.7 37 65-101 120-162 (343)
155 1e4v_A Adenylate kinase; trans 93.9 0.04 1.4E-06 48.0 3.9 30 69-101 2-31 (214)
156 3tau_A Guanylate kinase, GMP k 93.9 0.04 1.4E-06 48.0 3.9 26 65-90 6-31 (208)
157 1np6_A Molybdopterin-guanine d 93.9 0.056 1.9E-06 46.3 4.8 33 67-99 6-38 (174)
158 3be4_A Adenylate kinase; malar 93.9 0.046 1.6E-06 47.8 4.3 33 66-101 4-36 (217)
159 2cdn_A Adenylate kinase; phosp 93.9 0.056 1.9E-06 46.4 4.7 33 66-101 19-51 (201)
160 2p5t_B PEZT; postsegregational 93.9 0.062 2.1E-06 48.3 5.2 35 65-100 30-64 (253)
161 3trf_A Shikimate kinase, SK; a 93.9 0.052 1.8E-06 45.8 4.4 32 67-101 5-36 (185)
162 2wwf_A Thymidilate kinase, put 93.9 0.072 2.5E-06 45.8 5.4 31 65-95 8-38 (212)
163 1zd8_A GTP:AMP phosphotransfer 93.8 0.046 1.6E-06 48.0 4.2 33 66-101 6-38 (227)
164 1via_A Shikimate kinase; struc 93.8 0.043 1.5E-06 46.0 3.8 21 69-89 6-26 (175)
165 2plr_A DTMP kinase, probable t 93.8 0.049 1.7E-06 46.7 4.2 29 67-95 4-32 (213)
166 3a00_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 47.4 3.2 33 69-101 3-36 (186)
167 1nij_A Hypothetical protein YJ 93.8 0.026 9E-07 52.8 2.7 34 67-100 4-37 (318)
168 1m7g_A Adenylylsulfate kinase; 93.8 0.051 1.8E-06 47.2 4.4 34 66-99 24-60 (211)
169 2ged_A SR-beta, signal recogni 93.8 0.04 1.4E-06 46.4 3.6 25 65-89 46-70 (193)
170 2bwj_A Adenylate kinase 5; pho 93.8 0.06 2E-06 45.7 4.7 32 67-101 12-43 (199)
171 2hf9_A Probable hydrogenase ni 93.8 0.097 3.3E-06 45.4 6.1 30 65-94 36-65 (226)
172 2px0_A Flagellar biosynthesis 93.7 0.062 2.1E-06 49.9 5.0 38 65-102 103-141 (296)
173 1q57_A DNA primase/helicase; d 93.7 0.051 1.7E-06 54.0 4.6 37 66-102 241-278 (503)
174 1s96_A Guanylate kinase, GMP k 93.7 0.042 1.4E-06 48.8 3.6 27 65-91 14-40 (219)
175 1znw_A Guanylate kinase, GMP k 93.6 0.043 1.5E-06 47.6 3.6 27 65-91 18-44 (207)
176 1z6g_A Guanylate kinase; struc 93.6 0.041 1.4E-06 48.5 3.4 33 65-99 21-53 (218)
177 3pxg_A Negative regulator of g 93.6 0.075 2.6E-06 52.4 5.7 45 44-93 182-227 (468)
178 2qor_A Guanylate kinase; phosp 93.6 0.047 1.6E-06 47.2 3.7 27 65-91 10-36 (204)
179 1qf9_A UMP/CMP kinase, protein 93.6 0.06 2E-06 45.3 4.3 32 67-101 6-37 (194)
180 2j9r_A Thymidine kinase; TK1, 93.6 0.083 2.8E-06 46.9 5.3 37 65-101 26-62 (214)
181 1e6c_A Shikimate kinase; phosp 93.5 0.072 2.5E-06 44.2 4.7 30 68-100 3-32 (173)
182 1ko7_A HPR kinase/phosphatase; 93.5 0.082 2.8E-06 49.7 5.5 79 29-107 93-187 (314)
183 1cke_A CK, MSSA, protein (cyti 93.5 0.055 1.9E-06 47.1 4.1 23 67-89 5-27 (227)
184 2q6t_A DNAB replication FORK h 93.5 0.071 2.4E-06 52.2 5.3 37 65-101 198-235 (444)
185 2r62_A Cell division protease 93.5 0.027 9.1E-07 50.7 2.0 49 292-340 178-227 (268)
186 1qhx_A CPT, protein (chloramph 93.5 0.052 1.8E-06 45.4 3.7 33 68-101 4-36 (178)
187 1vht_A Dephospho-COA kinase; s 93.5 0.07 2.4E-06 46.4 4.7 31 67-101 4-34 (218)
188 2v54_A DTMP kinase, thymidylat 93.5 0.044 1.5E-06 46.8 3.3 26 66-91 3-28 (204)
189 2bbw_A Adenylate kinase 4, AK4 93.4 0.049 1.7E-06 48.5 3.6 25 66-90 26-50 (246)
190 2iyv_A Shikimate kinase, SK; t 93.4 0.065 2.2E-06 45.1 4.2 31 68-101 3-33 (184)
191 1vma_A Cell division protein F 93.3 0.07 2.4E-06 49.9 4.7 36 66-101 103-138 (306)
192 1ukz_A Uridylate kinase; trans 93.3 0.085 2.9E-06 45.2 4.9 32 67-101 15-46 (203)
193 3lda_A DNA repair protein RAD5 93.3 0.071 2.4E-06 51.8 4.8 27 66-92 177-203 (400)
194 1in4_A RUVB, holliday junction 93.3 0.054 1.9E-06 50.8 3.8 48 292-339 175-223 (334)
195 2xb4_A Adenylate kinase; ATP-b 93.2 0.082 2.8E-06 46.5 4.7 30 69-101 2-31 (223)
196 2ze6_A Isopentenyl transferase 93.2 0.047 1.6E-06 49.3 3.2 33 69-104 3-35 (253)
197 1rj9_A FTSY, signal recognitio 93.2 0.099 3.4E-06 48.8 5.4 34 66-99 101-134 (304)
198 3llm_A ATP-dependent RNA helic 93.2 0.18 6.2E-06 44.5 6.9 34 50-90 66-99 (235)
199 2i1q_A DNA repair and recombin 93.1 0.073 2.5E-06 49.5 4.5 26 66-91 97-122 (322)
200 3ney_A 55 kDa erythrocyte memb 93.1 0.066 2.2E-06 46.9 3.9 25 66-90 18-42 (197)
201 1ex7_A Guanylate kinase; subst 93.1 0.057 1.9E-06 46.8 3.4 23 68-90 2-24 (186)
202 1um8_A ATP-dependent CLP prote 93.1 0.094 3.2E-06 49.7 5.3 26 65-90 70-95 (376)
203 3kl4_A SRP54, signal recogniti 93.0 0.067 2.3E-06 52.5 4.2 36 66-101 96-131 (433)
204 2wsm_A Hydrogenase expression/ 93.0 0.088 3E-06 45.5 4.6 28 66-93 29-56 (221)
205 3lnc_A Guanylate kinase, GMP k 93.0 0.04 1.4E-06 48.6 2.4 25 66-90 26-51 (231)
206 3dm5_A SRP54, signal recogniti 93.0 0.077 2.6E-06 52.2 4.6 36 66-101 99-134 (443)
207 2jaq_A Deoxyguanosine kinase; 93.0 0.064 2.2E-06 45.6 3.5 31 69-102 2-32 (205)
208 3e70_C DPA, signal recognition 92.9 0.089 3.1E-06 49.6 4.8 37 65-101 127-163 (328)
209 3tif_A Uncharacterized ABC tra 92.9 0.064 2.2E-06 48.0 3.5 26 65-90 29-54 (235)
210 1pzn_A RAD51, DNA repair and r 92.9 0.083 2.8E-06 50.1 4.5 28 65-92 129-156 (349)
211 2pt5_A Shikimate kinase, SK; a 92.8 0.07 2.4E-06 44.1 3.5 29 69-100 2-30 (168)
212 3tqf_A HPR(Ser) kinase; transf 92.8 0.087 3E-06 45.5 4.1 37 66-102 15-54 (181)
213 1z2a_A RAS-related protein RAB 92.8 0.055 1.9E-06 44.0 2.8 24 66-89 4-27 (168)
214 3b9q_A Chloroplast SRP recepto 92.8 0.093 3.2E-06 48.8 4.7 33 66-98 99-131 (302)
215 1ky3_A GTP-binding protein YPT 92.8 0.058 2E-06 44.5 3.0 25 65-89 6-30 (182)
216 1u8z_A RAS-related protein RAL 92.8 0.068 2.3E-06 43.3 3.3 24 66-89 3-26 (168)
217 2dyk_A GTP-binding protein; GT 92.8 0.064 2.2E-06 43.4 3.1 22 68-89 2-23 (161)
218 4ag6_A VIRB4 ATPase, type IV s 92.7 0.11 3.7E-06 49.7 5.2 36 66-101 34-69 (392)
219 1fzq_A ADP-ribosylation factor 92.7 0.047 1.6E-06 45.9 2.3 24 65-88 14-37 (181)
220 2erx_A GTP-binding protein DI- 92.7 0.058 2E-06 44.0 2.8 23 67-89 3-25 (172)
221 2cbz_A Multidrug resistance-as 92.7 0.071 2.4E-06 47.8 3.5 33 65-97 29-62 (237)
222 4eaq_A DTMP kinase, thymidylat 92.7 0.1 3.4E-06 46.4 4.5 35 65-100 24-58 (229)
223 3b85_A Phosphate starvation-in 92.7 0.089 3E-06 46.2 4.1 31 67-97 22-52 (208)
224 1zak_A Adenylate kinase; ATP:A 92.7 0.082 2.8E-06 46.2 3.9 25 66-90 4-28 (222)
225 2lkc_A Translation initiation 92.7 0.081 2.8E-06 43.6 3.7 25 65-89 6-30 (178)
226 2www_A Methylmalonic aciduria 92.6 0.1 3.5E-06 49.5 4.8 30 65-94 72-101 (349)
227 1p9r_A General secretion pathw 92.6 0.13 4.5E-06 50.2 5.6 35 65-99 165-200 (418)
228 1zcb_A G alpha I/13; GTP-bindi 92.6 0.081 2.8E-06 50.6 4.0 44 52-96 18-61 (362)
229 2ewv_A Twitching motility prot 92.6 0.092 3.2E-06 50.3 4.4 35 65-99 134-170 (372)
230 2f9l_A RAB11B, member RAS onco 92.6 0.068 2.3E-06 45.6 3.2 24 67-90 5-28 (199)
231 2ce2_X GTPase HRAS; signaling 92.6 0.076 2.6E-06 42.8 3.3 22 68-89 4-25 (166)
232 2nzj_A GTP-binding protein REM 92.5 0.066 2.3E-06 43.9 3.0 23 66-88 3-25 (175)
233 1zu4_A FTSY; GTPase, signal re 92.5 0.11 3.7E-06 48.9 4.7 36 66-101 104-139 (320)
234 3cmu_A Protein RECA, recombina 92.5 0.093 3.2E-06 60.4 5.0 38 65-102 1425-1462(2050)
235 1svi_A GTP-binding protein YSX 92.5 0.083 2.8E-06 44.4 3.6 25 65-89 21-45 (195)
236 1kao_A RAP2A; GTP-binding prot 92.5 0.069 2.3E-06 43.2 3.0 23 67-89 3-25 (167)
237 3pqc_A Probable GTP-binding pr 92.5 0.085 2.9E-06 44.1 3.6 23 66-88 22-44 (195)
238 1oix_A RAS-related protein RAB 92.5 0.07 2.4E-06 45.4 3.1 23 67-89 29-51 (191)
239 1ltq_A Polynucleotide kinase; 92.5 0.1 3.5E-06 47.7 4.4 33 68-102 3-35 (301)
240 2pcj_A ABC transporter, lipopr 92.5 0.073 2.5E-06 47.2 3.3 35 65-99 28-63 (224)
241 1ek0_A Protein (GTP-binding pr 92.4 0.082 2.8E-06 43.0 3.4 23 67-89 3-25 (170)
242 1tf7_A KAIC; homohexamer, hexa 92.4 0.11 3.8E-06 51.9 4.9 36 65-100 279-314 (525)
243 2gj8_A MNME, tRNA modification 92.4 0.071 2.4E-06 44.5 3.0 24 66-89 3-26 (172)
244 2r44_A Uncharacterized protein 92.4 0.11 3.7E-06 48.3 4.5 23 67-89 46-68 (331)
245 1upt_A ARL1, ADP-ribosylation 92.4 0.086 2.9E-06 43.0 3.4 25 65-89 5-29 (171)
246 2zej_A Dardarin, leucine-rich 92.3 0.064 2.2E-06 45.1 2.7 22 68-89 3-24 (184)
247 1m2o_B GTP-binding protein SAR 92.3 0.084 2.9E-06 44.8 3.4 25 65-89 21-45 (190)
248 1moz_A ARL1, ADP-ribosylation 92.3 0.1 3.6E-06 43.2 3.9 24 65-88 16-39 (183)
249 1g8p_A Magnesium-chelatase 38 92.3 0.047 1.6E-06 50.8 1.9 24 67-90 45-68 (350)
250 1htw_A HI0065; nucleotide-bind 92.3 0.083 2.8E-06 44.4 3.2 27 65-91 31-57 (158)
251 3tqc_A Pantothenate kinase; bi 92.2 0.24 8.2E-06 46.6 6.7 26 67-92 92-117 (321)
252 1z08_A RAS-related protein RAB 92.2 0.089 3E-06 42.9 3.4 24 66-89 5-28 (170)
253 2vli_A Antibiotic resistance p 92.2 0.071 2.4E-06 44.6 2.8 23 67-89 5-27 (183)
254 2yhs_A FTSY, cell division pro 92.2 0.2 6.8E-06 50.0 6.4 34 66-99 292-326 (503)
255 2orv_A Thymidine kinase; TP4A 92.2 0.12 4.2E-06 46.5 4.4 36 66-101 18-53 (234)
256 1jr3_D DNA polymerase III, del 92.2 1.8 6.1E-05 40.1 12.8 90 238-337 93-183 (343)
257 3ice_A Transcription terminati 92.2 0.17 6E-06 49.1 5.8 48 50-101 161-210 (422)
258 2v3c_C SRP54, signal recogniti 92.2 0.065 2.2E-06 52.5 2.8 36 67-102 99-134 (432)
259 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.09 3.1E-06 43.3 3.3 24 66-89 6-29 (177)
260 1nrj_B SR-beta, signal recogni 92.2 0.1 3.6E-06 44.8 3.9 26 65-90 10-35 (218)
261 2fn4_A P23, RAS-related protei 92.2 0.092 3.1E-06 43.2 3.4 26 65-90 7-32 (181)
262 4e22_A Cytidylate kinase; P-lo 92.2 0.094 3.2E-06 47.1 3.7 31 65-98 25-55 (252)
263 2wji_A Ferrous iron transport 92.1 0.086 2.9E-06 43.5 3.2 22 67-88 3-24 (165)
264 2qt1_A Nicotinamide riboside k 92.1 0.086 2.9E-06 45.4 3.3 34 66-101 20-53 (207)
265 1b0u_A Histidine permease; ABC 92.1 0.09 3.1E-06 47.8 3.5 35 65-99 30-65 (262)
266 4edh_A DTMP kinase, thymidylat 92.1 0.14 4.7E-06 45.2 4.6 36 66-101 5-40 (213)
267 3q72_A GTP-binding protein RAD 92.1 0.095 3.2E-06 42.6 3.3 22 67-88 2-23 (166)
268 1sgw_A Putative ABC transporte 92.1 0.085 2.9E-06 46.7 3.2 35 65-99 33-68 (214)
269 1z0j_A RAB-22, RAS-related pro 92.0 0.097 3.3E-06 42.6 3.3 24 66-89 5-28 (170)
270 1g16_A RAS-related protein SEC 92.0 0.089 3E-06 42.8 3.1 23 67-89 3-25 (170)
271 2f6r_A COA synthase, bifunctio 92.0 0.14 4.7E-06 47.0 4.7 31 67-101 75-105 (281)
272 2wjg_A FEOB, ferrous iron tran 92.0 0.079 2.7E-06 44.3 2.8 24 66-89 6-29 (188)
273 2gk6_A Regulator of nonsense t 92.0 0.12 4.3E-06 52.7 4.8 34 67-100 195-229 (624)
274 1mv5_A LMRA, multidrug resista 92.0 0.084 2.9E-06 47.4 3.1 35 65-99 26-61 (243)
275 2ff7_A Alpha-hemolysin translo 92.0 0.091 3.1E-06 47.4 3.4 26 65-90 33-58 (247)
276 2zu0_C Probable ATP-dependent 92.0 0.1 3.4E-06 47.7 3.7 26 65-90 44-69 (267)
277 1sq5_A Pantothenate kinase; P- 92.0 0.25 8.7E-06 45.7 6.5 35 65-99 78-115 (308)
278 4gzl_A RAS-related C3 botulinu 92.0 0.089 3.1E-06 45.1 3.2 27 64-90 27-53 (204)
279 2pze_A Cystic fibrosis transme 91.9 0.094 3.2E-06 46.7 3.4 35 65-99 32-67 (229)
280 3def_A T7I23.11 protein; chlor 91.9 0.061 2.1E-06 48.5 2.2 37 50-89 22-58 (262)
281 2bme_A RAB4A, RAS-related prot 91.9 0.088 3E-06 43.8 3.0 25 65-89 8-32 (186)
282 2ghi_A Transport protein; mult 91.9 0.098 3.4E-06 47.5 3.5 35 65-99 44-78 (260)
283 2jeo_A Uridine-cytidine kinase 91.9 0.095 3.2E-06 46.7 3.4 26 65-90 23-48 (245)
284 1vg8_A RAS-related protein RAB 91.9 0.087 3E-06 44.7 3.0 26 65-90 6-31 (207)
285 1ji0_A ABC transporter; ATP bi 91.9 0.096 3.3E-06 46.9 3.4 35 65-99 30-65 (240)
286 4dsu_A GTPase KRAS, isoform 2B 91.9 0.078 2.7E-06 44.1 2.6 24 66-89 3-26 (189)
287 1ak2_A Adenylate kinase isoenz 91.8 0.19 6.5E-06 44.3 5.3 33 66-101 15-47 (233)
288 1f6b_A SAR1; gtpases, N-termin 91.8 0.12 4.1E-06 44.2 3.8 25 64-88 22-46 (198)
289 2onk_A Molybdate/tungstate ABC 91.8 0.11 3.6E-06 46.8 3.6 34 65-99 23-57 (240)
290 2ixe_A Antigen peptide transpo 91.8 0.1 3.5E-06 47.8 3.5 35 65-99 43-78 (271)
291 3ihw_A Centg3; RAS, centaurin, 91.8 0.11 3.7E-06 43.9 3.4 25 65-89 18-42 (184)
292 3q85_A GTP-binding protein REM 91.8 0.1 3.4E-06 42.6 3.2 21 68-88 3-23 (169)
293 2og2_A Putative signal recogni 91.8 0.15 5E-06 48.8 4.7 34 66-99 156-190 (359)
294 1odf_A YGR205W, hypothetical 3 91.8 0.17 5.8E-06 46.8 5.1 42 52-93 15-57 (290)
295 2y8e_A RAB-protein 6, GH09086P 91.8 0.1 3.6E-06 42.8 3.3 23 67-89 14-36 (179)
296 3tw8_B RAS-related protein RAB 91.8 0.077 2.6E-06 43.7 2.4 24 65-88 7-30 (181)
297 3clv_A RAB5 protein, putative; 91.7 0.12 4.3E-06 43.1 3.8 26 65-90 5-30 (208)
298 2d2e_A SUFC protein; ABC-ATPas 91.7 0.11 3.7E-06 46.9 3.5 35 65-99 27-64 (250)
299 1g6h_A High-affinity branched- 91.7 0.1 3.5E-06 47.3 3.4 35 65-99 31-66 (257)
300 2olj_A Amino acid ABC transpor 91.7 0.11 3.6E-06 47.5 3.5 35 65-99 48-83 (263)
301 3gfo_A Cobalt import ATP-bindi 91.7 0.1 3.5E-06 48.0 3.4 26 65-90 32-57 (275)
302 2qi9_C Vitamin B12 import ATP- 91.7 0.1 3.5E-06 47.2 3.4 35 65-99 24-58 (249)
303 1e9r_A Conjugal transfer prote 91.7 0.14 4.8E-06 49.5 4.6 41 66-106 52-93 (437)
304 1r2q_A RAS-related protein RAB 91.7 0.11 3.9E-06 42.1 3.4 23 67-89 6-28 (170)
305 1z0f_A RAB14, member RAS oncog 91.6 0.11 3.9E-06 42.6 3.4 24 66-89 14-37 (179)
306 2yz2_A Putative ABC transporte 91.6 0.11 3.7E-06 47.3 3.5 35 65-99 31-66 (266)
307 3kkq_A RAS-related protein M-R 91.6 0.11 3.7E-06 43.2 3.3 25 65-89 16-40 (183)
308 1c1y_A RAS-related protein RAP 91.6 0.11 3.7E-06 42.1 3.2 23 67-89 3-25 (167)
309 1h65_A Chloroplast outer envel 91.6 0.15 5.1E-06 46.1 4.4 40 47-89 22-61 (270)
310 1r8s_A ADP-ribosylation factor 91.6 0.12 4E-06 41.9 3.4 21 69-89 2-22 (164)
311 3kta_A Chromosome segregation 91.6 0.1 3.4E-06 43.9 3.0 23 69-92 28-50 (182)
312 1r6b_X CLPA protein; AAA+, N-t 91.6 0.21 7.2E-06 52.0 6.0 41 46-91 190-231 (758)
313 3bwd_D RAC-like GTP-binding pr 91.5 0.13 4.6E-06 42.4 3.7 25 65-89 6-30 (182)
314 1jwy_B Dynamin A GTPase domain 91.5 0.2 6.7E-06 46.0 5.2 41 50-90 3-47 (315)
315 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.09 3.1E-06 49.8 2.8 24 67-90 123-146 (331)
316 2cxx_A Probable GTP-binding pr 91.5 0.11 3.7E-06 43.3 3.1 22 68-89 2-23 (190)
317 3qf7_A RAD50; ABC-ATPase, ATPa 91.5 0.11 3.7E-06 49.6 3.5 23 69-92 25-47 (365)
318 1svm_A Large T antigen; AAA+ f 91.5 0.19 6.4E-06 48.4 5.2 25 65-89 167-191 (377)
319 1zuh_A Shikimate kinase; alpha 91.5 0.12 4.1E-06 42.8 3.4 29 68-99 8-36 (168)
320 4g1u_C Hemin import ATP-bindin 91.4 0.11 3.8E-06 47.4 3.4 35 65-99 35-70 (266)
321 3bc1_A RAS-related protein RAB 91.4 0.12 4.1E-06 43.0 3.4 24 66-89 10-33 (195)
322 3hjn_A DTMP kinase, thymidylat 91.4 0.17 6E-06 43.8 4.5 32 70-101 3-34 (197)
323 1vpl_A ABC transporter, ATP-bi 91.4 0.12 4.1E-06 46.9 3.5 35 65-99 39-74 (256)
324 2qm8_A GTPase/ATPase; G protei 91.4 0.18 6.1E-06 47.6 4.8 30 65-94 53-82 (337)
325 1tq4_A IIGP1, interferon-induc 91.4 0.16 5.4E-06 49.5 4.6 32 67-98 69-101 (413)
326 2hxs_A RAB-26, RAS-related pro 91.4 0.11 3.9E-06 42.7 3.1 25 65-89 4-28 (178)
327 2f1r_A Molybdopterin-guanine d 91.4 0.1 3.5E-06 44.4 2.9 29 68-96 3-31 (171)
328 2efe_B Small GTP-binding prote 91.3 0.13 4.3E-06 42.5 3.4 24 66-89 11-34 (181)
329 3fvq_A Fe(3+) IONS import ATP- 91.3 0.12 4.2E-06 49.4 3.6 35 65-99 28-63 (359)
330 2g6b_A RAS-related protein RAB 91.3 0.11 3.8E-06 42.8 3.0 25 65-89 8-32 (180)
331 3pxi_A Negative regulator of g 91.3 0.18 6.3E-06 52.6 5.3 42 44-90 182-224 (758)
332 1uj2_A Uridine-cytidine kinase 91.3 0.12 4.1E-06 46.2 3.4 24 66-89 21-44 (252)
333 1yrb_A ATP(GTP)binding protein 91.3 0.17 5.8E-06 45.0 4.3 36 65-101 12-47 (262)
334 2grj_A Dephospho-COA kinase; T 91.2 0.21 7.1E-06 43.2 4.8 32 67-101 12-43 (192)
335 2nq2_C Hypothetical ABC transp 91.2 0.12 4.2E-06 46.7 3.4 33 65-97 29-62 (253)
336 3crm_A TRNA delta(2)-isopenten 91.2 0.24 8.3E-06 46.6 5.5 35 68-105 6-40 (323)
337 2aka_B Dynamin-1; fusion prote 91.1 0.24 8.3E-06 44.8 5.3 25 65-89 24-48 (299)
338 2gf0_A GTP-binding protein DI- 91.1 0.15 5E-06 42.9 3.6 25 65-89 6-30 (199)
339 2a9k_A RAS-related protein RAL 91.1 0.13 4.4E-06 42.6 3.2 24 66-89 17-40 (187)
340 3qks_A DNA double-strand break 91.1 0.14 4.7E-06 44.6 3.5 24 68-92 24-47 (203)
341 3tkl_A RAS-related protein RAB 91.1 0.11 3.8E-06 43.6 2.8 24 66-89 15-38 (196)
342 1ypw_A Transitional endoplasmi 91.1 0.17 5.7E-06 53.5 4.8 23 65-87 236-258 (806)
343 3nwj_A ATSK2; P loop, shikimat 91.1 0.13 4.4E-06 46.6 3.4 31 67-100 48-78 (250)
344 1j8m_F SRP54, signal recogniti 91.1 0.15 5.2E-06 47.3 4.0 35 67-101 98-132 (297)
345 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.12 4E-06 42.8 2.9 24 66-89 4-27 (186)
346 2yyz_A Sugar ABC transporter, 91.1 0.14 4.7E-06 49.0 3.7 35 65-99 27-62 (359)
347 1zj6_A ADP-ribosylation factor 91.1 0.14 4.7E-06 42.9 3.3 25 65-89 14-38 (187)
348 2vp4_A Deoxynucleoside kinase; 91.0 0.11 3.8E-06 45.8 2.9 32 65-99 18-49 (230)
349 1pui_A ENGB, probable GTP-bind 91.0 0.1 3.5E-06 44.5 2.6 24 65-88 24-47 (210)
350 3rlf_A Maltose/maltodextrin im 91.0 0.14 4.7E-06 49.4 3.7 35 65-99 27-62 (381)
351 2ihy_A ABC transporter, ATP-bi 91.0 0.13 4.4E-06 47.3 3.4 35 65-99 45-80 (279)
352 2atv_A RERG, RAS-like estrogen 91.0 0.14 4.8E-06 43.3 3.4 25 65-89 26-50 (196)
353 2it1_A 362AA long hypothetical 90.9 0.14 4.9E-06 48.9 3.7 35 65-99 27-62 (362)
354 3con_A GTPase NRAS; structural 90.9 0.14 5E-06 42.7 3.4 24 66-89 20-43 (190)
355 2gno_A DNA polymerase III, gam 90.9 0.13 4.3E-06 48.0 3.2 54 239-310 99-152 (305)
356 1m7b_A RND3/RHOE small GTP-bin 90.9 0.13 4.3E-06 43.1 2.9 25 65-89 5-29 (184)
357 3foz_A TRNA delta(2)-isopenten 90.9 0.28 9.6E-06 46.0 5.5 38 65-105 8-45 (316)
358 3lxx_A GTPase IMAP family memb 90.9 0.12 4E-06 45.7 2.8 24 65-88 27-50 (239)
359 1v43_A Sugar-binding transport 90.9 0.15 5E-06 49.1 3.7 35 65-99 35-70 (372)
360 3d31_A Sulfate/molybdate ABC t 90.8 0.12 4.1E-06 49.2 3.0 35 65-99 24-59 (348)
361 3t5g_A GTP-binding protein RHE 90.8 0.14 4.7E-06 42.4 3.1 23 66-88 5-27 (181)
362 1z06_A RAS-related protein RAB 90.8 0.13 4.5E-06 43.1 3.0 25 65-89 18-42 (189)
363 2ocp_A DGK, deoxyguanosine kin 90.8 0.16 5.6E-06 44.9 3.7 35 67-103 2-36 (241)
364 1z47_A CYSA, putative ABC-tran 90.8 0.14 4.9E-06 48.8 3.5 35 65-99 39-74 (355)
365 3cph_A RAS-related protein SEC 90.8 0.14 4.9E-06 43.6 3.2 24 66-89 19-42 (213)
366 2bbs_A Cystic fibrosis transme 90.8 0.15 5E-06 47.3 3.5 33 65-97 62-95 (290)
367 1q3t_A Cytidylate kinase; nucl 90.8 0.18 6.1E-06 44.6 3.9 33 65-100 14-46 (236)
368 2oil_A CATX-8, RAS-related pro 90.7 0.15 5.2E-06 42.8 3.3 24 66-89 24-47 (193)
369 1w36_D RECD, exodeoxyribonucle 90.7 0.21 7.1E-06 51.0 4.9 38 67-104 164-206 (608)
370 2j37_W Signal recognition part 90.7 0.2 6.7E-06 50.2 4.6 36 66-101 100-135 (504)
371 2npi_A Protein CLP1; CLP1-PCF1 90.7 0.12 4.2E-06 51.0 3.1 37 65-101 136-175 (460)
372 1ls1_A Signal recognition part 90.7 0.22 7.4E-06 46.1 4.6 36 66-101 97-132 (295)
373 2gza_A Type IV secretion syste 90.7 0.14 4.7E-06 48.8 3.3 35 66-100 174-209 (361)
374 1zd9_A ADP-ribosylation factor 90.7 0.13 4.4E-06 43.3 2.8 25 65-89 20-44 (188)
375 2obl_A ESCN; ATPase, hydrolase 90.7 0.18 6.2E-06 47.9 4.1 28 65-92 69-96 (347)
376 1lw7_A Transcriptional regulat 90.6 0.13 4.3E-06 48.9 3.0 25 67-91 170-194 (365)
377 2h17_A ADP-ribosylation factor 90.6 0.13 4.5E-06 42.9 2.8 25 65-89 19-43 (181)
378 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.17 5.8E-06 41.8 3.5 24 68-92 24-47 (149)
379 3cmw_A Protein RECA, recombina 90.6 0.2 6.9E-06 56.9 5.0 38 65-102 381-418 (1706)
380 2fh5_B SR-beta, signal recogni 90.6 0.16 5.6E-06 43.5 3.5 26 65-90 5-30 (214)
381 1ksh_A ARF-like protein 2; sma 90.6 0.13 4.3E-06 43.0 2.7 25 65-89 16-40 (186)
382 2x77_A ADP-ribosylation factor 90.6 0.18 6.1E-06 42.2 3.6 23 65-87 20-42 (189)
383 4tmk_A Protein (thymidylate ki 90.6 0.35 1.2E-05 42.5 5.7 30 67-96 3-32 (213)
384 2iwr_A Centaurin gamma 1; ANK 90.6 0.14 4.6E-06 42.4 2.8 25 65-89 5-29 (178)
385 2xau_A PRE-mRNA-splicing facto 90.6 0.43 1.5E-05 50.1 7.2 48 49-103 98-149 (773)
386 3gd7_A Fusion complex of cysti 90.6 0.16 5.4E-06 49.2 3.6 35 65-99 45-79 (390)
387 3dz8_A RAS-related protein RAB 90.6 0.15 5.1E-06 42.9 3.1 25 66-90 22-46 (191)
388 2wjy_A Regulator of nonsense t 90.5 0.2 6.8E-06 52.9 4.6 32 68-99 372-404 (800)
389 2bov_A RAla, RAS-related prote 90.5 0.15 5.3E-06 43.0 3.2 25 65-89 12-36 (206)
390 2a5j_A RAS-related protein RAB 90.5 0.16 5.6E-06 42.7 3.3 24 66-89 20-43 (191)
391 1g29_1 MALK, maltose transport 90.5 0.16 5.4E-06 48.8 3.5 35 65-99 27-62 (372)
392 2qmh_A HPR kinase/phosphorylas 90.5 0.14 4.6E-06 45.2 2.8 25 66-90 33-57 (205)
393 2gxq_A Heat resistant RNA depe 90.4 0.99 3.4E-05 38.1 8.3 23 67-89 38-60 (207)
394 2fg5_A RAB-22B, RAS-related pr 90.4 0.17 5.7E-06 42.7 3.3 24 66-89 22-45 (192)
395 2b6h_A ADP-ribosylation factor 90.4 0.17 5.8E-06 42.9 3.3 24 65-88 27-50 (192)
396 3c5c_A RAS-like protein 12; GD 90.4 0.15 5.2E-06 42.9 3.0 25 65-89 19-43 (187)
397 1of1_A Thymidine kinase; trans 90.3 0.13 4.3E-06 49.6 2.7 38 65-102 47-84 (376)
398 3sop_A Neuronal-specific septi 90.3 0.15 5.2E-06 46.6 3.1 23 69-91 4-26 (270)
399 1x3s_A RAS-related protein RAB 90.3 0.18 6.1E-06 42.1 3.4 24 66-89 14-37 (195)
400 2p67_A LAO/AO transport system 90.3 0.41 1.4E-05 45.0 6.2 31 65-95 54-84 (341)
401 1qde_A EIF4A, translation init 90.3 0.76 2.6E-05 39.5 7.6 32 47-85 38-69 (224)
402 2xxa_A Signal recognition part 90.3 0.24 8.3E-06 48.5 4.7 35 67-101 100-135 (433)
403 2gf9_A RAS-related protein RAB 90.3 0.17 5.8E-06 42.4 3.2 23 67-89 22-44 (189)
404 3dkp_A Probable ATP-dependent 90.2 0.56 1.9E-05 41.2 6.7 19 68-86 67-85 (245)
405 4bas_A ADP-ribosylation factor 90.2 0.14 4.8E-06 43.0 2.6 25 65-89 15-39 (199)
406 2va8_A SSO2462, SKI2-type heli 90.2 0.44 1.5E-05 49.1 6.9 69 27-104 14-85 (715)
407 2p5s_A RAS and EF-hand domain 90.2 0.17 5.9E-06 42.9 3.2 25 65-89 26-50 (199)
408 2fz4_A DNA repair protein RAD2 90.2 0.52 1.8E-05 41.8 6.5 50 45-103 93-142 (237)
409 3szr_A Interferon-induced GTP- 90.2 0.23 7.9E-06 50.7 4.7 42 49-90 26-68 (608)
410 3aez_A Pantothenate kinase; tr 90.1 0.17 5.7E-06 47.3 3.3 28 65-92 88-115 (312)
411 3m6a_A ATP-dependent protease 90.1 0.2 6.7E-06 50.5 4.1 27 65-91 106-132 (543)
412 1e2k_A Thymidine kinase; trans 90.1 0.13 4.5E-06 48.6 2.6 36 67-102 4-39 (331)
413 2cjw_A GTP-binding protein GEM 90.1 0.17 6E-06 42.9 3.2 23 66-88 5-27 (192)
414 3cmu_A Protein RECA, recombina 90.1 0.23 8E-06 57.2 5.0 38 65-102 381-418 (2050)
415 3lfu_A DNA helicase II; SF1 he 90.1 0.27 9.3E-06 49.8 5.1 29 66-94 21-49 (647)
416 1zbd_A Rabphilin-3A; G protein 90.0 0.18 6.1E-06 42.7 3.2 23 67-89 8-30 (203)
417 3lxw_A GTPase IMAP family memb 90.0 0.15 5.1E-06 45.6 2.8 25 65-89 19-43 (247)
418 3l0o_A Transcription terminati 90.0 0.48 1.6E-05 46.0 6.4 50 48-101 160-211 (427)
419 2bcg_Y Protein YP2, GTP-bindin 90.0 0.19 6.4E-06 42.8 3.3 24 66-89 7-30 (206)
420 3lv8_A DTMP kinase, thymidylat 90.0 0.33 1.1E-05 43.6 5.0 32 66-97 26-57 (236)
421 2o52_A RAS-related protein RAB 90.0 0.18 6.1E-06 43.0 3.1 25 65-89 23-47 (200)
422 2qu8_A Putative nucleolar GTP- 89.9 0.19 6.6E-06 43.8 3.4 25 65-89 27-51 (228)
423 3b6e_A Interferon-induced heli 89.9 0.49 1.7E-05 40.2 5.9 41 45-92 33-73 (216)
424 1gwn_A RHO-related GTP-binding 89.9 0.17 5.8E-06 43.6 2.9 25 65-89 26-50 (205)
425 3reg_A RHO-like small GTPase; 89.9 0.2 6.8E-06 42.2 3.4 25 65-89 21-45 (194)
426 3r20_A Cytidylate kinase; stru 89.8 0.22 7.6E-06 44.6 3.8 31 67-100 9-39 (233)
427 3cmw_A Protein RECA, recombina 89.8 0.26 8.8E-06 56.0 5.0 37 65-101 730-766 (1706)
428 1oxx_K GLCV, glucose, ABC tran 89.8 0.13 4.5E-06 49.0 2.3 35 65-99 29-64 (353)
429 3e2i_A Thymidine kinase; Zn-bi 89.8 0.29 1E-05 43.5 4.4 34 66-99 27-60 (219)
430 2xtp_A GTPase IMAP family memb 89.7 0.18 6.2E-06 44.9 3.1 25 65-89 20-44 (260)
431 3oes_A GTPase rhebl1; small GT 89.7 0.19 6.5E-06 42.7 3.1 25 65-89 22-46 (201)
432 3t34_A Dynamin-related protein 89.7 0.32 1.1E-05 45.9 4.9 24 66-89 33-56 (360)
433 3pxi_A Negative regulator of g 89.7 0.27 9.1E-06 51.3 4.8 34 68-101 522-555 (758)
434 3t1o_A Gliding protein MGLA; G 89.7 0.2 6.8E-06 41.8 3.2 23 66-89 13-35 (198)
435 3nh6_A ATP-binding cassette SU 89.7 0.17 5.8E-06 47.3 2.9 35 65-99 78-113 (306)
436 2dpy_A FLII, flagellum-specifi 89.6 0.24 8.2E-06 48.6 4.1 28 65-92 155-182 (438)
437 1sky_E F1-ATPase, F1-ATP synth 89.6 0.32 1.1E-05 48.2 5.0 46 52-101 140-186 (473)
438 2ga8_A Hypothetical 39.9 kDa p 89.6 0.41 1.4E-05 45.7 5.6 38 50-88 8-45 (359)
439 3nbx_X ATPase RAVA; AAA+ ATPas 89.6 0.16 5.4E-06 50.7 2.9 25 67-91 41-65 (500)
440 2q3h_A RAS homolog gene family 89.6 0.19 6.6E-06 42.4 3.0 25 65-89 18-42 (201)
441 3sr0_A Adenylate kinase; phosp 89.5 0.23 7.9E-06 43.5 3.5 28 69-99 2-29 (206)
442 2oap_1 GSPE-2, type II secreti 89.5 0.17 5.7E-06 50.7 2.9 34 66-99 259-293 (511)
443 3tmk_A Thymidylate kinase; pho 89.5 0.39 1.3E-05 42.4 5.0 36 66-102 4-39 (216)
444 2r2a_A Uncharacterized protein 89.4 0.22 7.4E-06 43.5 3.3 19 69-87 7-25 (199)
445 2ew1_A RAS-related protein RAB 89.4 0.22 7.6E-06 42.8 3.3 24 66-89 25-48 (201)
446 3llu_A RAS-related GTP-binding 89.4 0.23 7.8E-06 42.1 3.4 23 65-87 18-40 (196)
447 2pjz_A Hypothetical protein ST 89.4 0.21 7.2E-06 45.5 3.3 33 67-99 30-62 (263)
448 2v6i_A RNA helicase; membrane, 89.4 0.21 7.1E-06 48.6 3.4 37 67-103 2-40 (431)
449 1tf7_A KAIC; homohexamer, hexa 89.3 0.27 9.2E-06 49.1 4.3 24 65-88 37-60 (525)
450 2il1_A RAB12; G-protein, GDP, 89.3 0.21 7.2E-06 42.2 3.0 23 67-89 26-48 (192)
451 2f7s_A C25KG, RAS-related prot 89.2 0.22 7.5E-06 42.7 3.2 24 66-89 24-47 (217)
452 2ffh_A Protein (FFH); SRP54, s 89.2 0.31 1.1E-05 47.6 4.6 36 66-101 97-132 (425)
453 2h57_A ADP-ribosylation factor 89.2 0.17 5.6E-06 42.5 2.3 25 65-89 19-43 (190)
454 2h92_A Cytidylate kinase; ross 89.2 0.37 1.3E-05 41.6 4.6 31 68-101 4-34 (219)
455 3zvl_A Bifunctional polynucleo 89.1 0.21 7.1E-06 48.5 3.2 32 67-101 258-289 (416)
456 2j1l_A RHO-related GTP-binding 89.1 0.21 7.1E-06 43.1 2.9 25 65-89 32-56 (214)
457 3exa_A TRNA delta(2)-isopenten 89.1 0.44 1.5E-05 44.8 5.3 35 67-104 3-37 (322)
458 3v9p_A DTMP kinase, thymidylat 89.0 0.28 9.6E-06 43.7 3.8 35 65-99 23-61 (227)
459 3k53_A Ferrous iron transport 89.0 0.22 7.6E-06 45.0 3.1 22 67-88 3-24 (271)
460 2c61_A A-type ATP synthase non 89.0 0.26 9E-06 48.7 3.8 57 65-141 150-210 (469)
461 2fv8_A H6, RHO-related GTP-bin 89.0 0.25 8.5E-06 42.2 3.3 24 66-89 24-47 (207)
462 2gco_A H9, RHO-related GTP-bin 88.9 0.25 8.6E-06 42.0 3.3 23 67-89 25-47 (201)
463 4dhe_A Probable GTP-binding pr 88.9 0.17 5.7E-06 43.6 2.1 25 65-89 27-51 (223)
464 3ake_A Cytidylate kinase; CMP 88.9 0.24 8.4E-06 42.1 3.2 21 69-89 4-24 (208)
465 2fu5_C RAS-related protein RAB 88.8 0.13 4.3E-06 42.7 1.3 24 66-89 7-30 (183)
466 3tui_C Methionine import ATP-b 88.8 0.27 9.2E-06 47.1 3.7 35 65-99 52-87 (366)
467 1p5z_B DCK, deoxycytidine kina 88.8 0.12 4.1E-06 46.5 1.2 36 65-102 22-57 (263)
468 2pt7_A CAG-ALFA; ATPase, prote 88.8 0.16 5.6E-06 47.7 2.1 34 66-99 170-204 (330)
469 3ly5_A ATP-dependent RNA helic 88.7 0.89 3E-05 40.7 7.0 20 68-87 92-111 (262)
470 2xzl_A ATP-dependent helicase 88.7 0.29 1E-05 51.6 4.2 27 67-93 375-401 (802)
471 3iby_A Ferrous iron transport 88.7 0.25 8.6E-06 44.6 3.2 21 68-88 2-22 (256)
472 1qvr_A CLPB protein; coiled co 88.6 0.29 1E-05 51.8 4.2 36 66-101 587-622 (854)
473 3cbq_A GTP-binding protein REM 88.6 0.21 7.1E-06 42.6 2.5 22 66-87 22-43 (195)
474 3q3j_B RHO-related GTP-binding 88.5 0.28 9.5E-06 42.4 3.4 25 65-89 25-49 (214)
475 1u0l_A Probable GTPase ENGC; p 88.5 0.27 9.1E-06 45.5 3.4 34 66-99 168-202 (301)
476 2g3y_A GTP-binding protein GEM 88.5 0.26 8.9E-06 43.0 3.2 23 66-88 36-58 (211)
477 2atx_A Small GTP binding prote 88.5 0.28 9.6E-06 41.1 3.3 24 66-89 17-40 (194)
478 2j0v_A RAC-like GTP-binding pr 88.5 0.28 9.7E-06 41.8 3.3 25 65-89 7-31 (212)
479 3umf_A Adenylate kinase; rossm 88.4 0.31 1.1E-05 43.1 3.6 30 66-98 28-57 (217)
480 1hv8_A Putative ATP-dependent 88.3 1.1 3.9E-05 40.9 7.7 24 68-91 45-68 (367)
481 3ld9_A DTMP kinase, thymidylat 88.3 0.25 8.4E-06 44.0 2.9 36 65-100 19-55 (223)
482 2hup_A RAS-related protein RAB 88.3 0.29 1E-05 41.7 3.3 24 66-89 28-51 (201)
483 2yv5_A YJEQ protein; hydrolase 88.3 0.3 1E-05 45.2 3.5 33 66-99 164-197 (302)
484 3pey_A ATP-dependent RNA helic 88.3 1.4 4.7E-05 40.9 8.2 40 47-91 29-68 (395)
485 2rcn_A Probable GTPase ENGC; Y 88.1 0.3 1E-05 46.6 3.6 26 66-91 214-239 (358)
486 2pl3_A Probable ATP-dependent 88.1 2.1 7E-05 37.2 8.8 20 67-86 62-81 (236)
487 1g41_A Heat shock protein HSLU 88.1 0.31 1.1E-05 47.9 3.7 80 207-306 253-345 (444)
488 1osn_A Thymidine kinase, VZV-T 88.0 0.2 6.9E-06 47.6 2.2 40 66-106 11-51 (341)
489 4dkx_A RAS-related protein RAB 88.0 0.31 1.1E-05 42.8 3.4 23 67-89 13-35 (216)
490 1knx_A Probable HPR(Ser) kinas 88.0 0.33 1.1E-05 45.5 3.6 36 66-101 146-184 (312)
491 2z0m_A 337AA long hypothetical 88.0 1.8 6.1E-05 39.2 8.6 35 47-88 18-52 (337)
492 1vec_A ATP-dependent RNA helic 87.9 1.7 5.6E-05 36.7 7.9 22 67-88 40-61 (206)
493 1a7j_A Phosphoribulokinase; tr 87.9 0.24 8.3E-06 45.6 2.7 39 66-104 4-44 (290)
494 3a8t_A Adenylate isopentenyltr 87.8 0.54 1.8E-05 44.6 5.0 37 66-105 39-75 (339)
495 3gqb_B V-type ATP synthase bet 87.7 0.36 1.2E-05 47.6 3.9 56 65-140 145-211 (464)
496 3cpj_B GTP-binding protein YPT 87.5 0.35 1.2E-05 41.9 3.3 24 66-89 12-35 (223)
497 2zpa_A Uncharacterized protein 87.5 0.45 1.5E-05 49.1 4.6 36 68-105 193-228 (671)
498 2qnr_A Septin-2, protein NEDD5 87.5 0.29 9.8E-06 45.3 2.9 23 67-89 18-40 (301)
499 2p6r_A Afuhel308 helicase; pro 87.5 0.47 1.6E-05 48.9 4.8 38 67-104 40-78 (702)
500 3vr4_D V-type sodium ATPase su 87.5 0.35 1.2E-05 47.7 3.6 57 65-141 149-209 (465)
No 1
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.87 E-value=1.1e-07 Score=90.56 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=116.1
Q ss_pred ech-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhC------CeEEEEeCCccccccCCcceeccC
Q psy3261 46 IRN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHEN------NYLLVHIPWVLRWFAYPKEVSHSL 118 (342)
Q Consensus 46 vR~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~------gwiVl~vP~~~~~~~~~~~~~~s~ 118 (342)
-|+ ...+|.+.++. .-.......++|+|++|||||+++..+....... ++.++++.....
T Consensus 23 gr~~~~~~l~~~l~~-~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------ 89 (387)
T 2v1u_A 23 HREAELRRLAEVLAP-ALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR------------ 89 (387)
T ss_dssp TCHHHHHHHHHTTGG-GTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS------------
T ss_pred CHHHHHHHHHHHHHH-HHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC------------
Confidence 365 33444555555 3223456789999999999999999888876554 788887732211
Q ss_pred CCCCccccHHHHHHHHHHHHHhCccccCCCCcccccceecCCCCCCCCCCCHHHHHHhhcccccchhHHHHHHHHHHhcc
Q psy3261 119 TKEGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLFTEIKKL 198 (342)
Q Consensus 119 ~~~~~~~qP~~a~~~L~~~~~~N~~~L~~~~l~~s~~~~~~~~e~~~~g~tL~dlv~~gi~~~~~a~~~~~~l~~EL~~~ 198 (342)
.........++..+ . ... ...|.+.. ..+..+.+.+..
T Consensus 90 -----~~~~~~~~~l~~~l--------~---~~~-----------~~~~~~~~--------------~~~~~l~~~l~~- 127 (387)
T 2v1u_A 90 -----ETPYRVASAIAEAV--------G---VRV-----------PFTGLSVG--------------EVYERLVKRLSR- 127 (387)
T ss_dssp -----CSHHHHHHHHHHHH--------S---CCC-----------CSSCCCHH--------------HHHHHHHHHHTT-
T ss_pred -----CCHHHHHHHHHHHh--------C---CCC-----------CCCCCCHH--------------HHHHHHHHHHhc-
Confidence 00011223333333 1 100 01122222 234445555543
Q ss_pred ccCCCceEEEEEeCccccccCC-CcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchh
Q psy3261 199 STEGVCRTFVCVDGYNSFFAEK-TNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPL 275 (342)
Q Consensus 199 ~~~~~~pVLvavD~~n~~~~~s-~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~ 275 (342)
...|++|.|||+..+.... . ..+...+++..... -.+..+|++++... ... .+..
T Consensus 128 ---~~~~~vlilDEi~~l~~~~~~--------------~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~-~~~----~l~~ 185 (387)
T 2v1u_A 128 ---LRGIYIIVLDEIDFLPKRPGG--------------QDLLYRITRINQELGDRVWVSLVGITNSLG-FVE----NLEP 185 (387)
T ss_dssp ---SCSEEEEEEETTTHHHHSTTH--------------HHHHHHHHHGGGCC-----CEEEEECSCST-TSS----SSCH
T ss_pred ---cCCeEEEEEccHhhhcccCCC--------------ChHHHhHhhchhhcCCCceEEEEEEECCCc-hHh----hhCH
Confidence 2569999999998775431 1 23333334433321 22334555554331 111 1222
Q ss_pred HHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCC----CccCcchHHHHHHhhC---CCHHHHhhhcc
Q psy3261 276 YMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKK----WLQTSEGREEIAFLTK---RVPQKMYEFCS 340 (342)
Q Consensus 276 ~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~----~l~~e~~~~el~~lSg---GNP~~l~~lc~ 340 (342)
.+..+.+. ..+.++.|+.+|...++......+ .+ +++....+.-.++ |||+.+.++|.
T Consensus 186 ~l~~r~~~------~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 186 RVKSSLGE------VELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp HHHTTTTS------EECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHhcCCC------eEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33332111 247899999999999998876542 22 4555556777888 99999888763
No 2
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.81 E-value=1.1e-07 Score=83.56 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=67.1
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..|.+|.|||+..+-. .....|++++.....+..+|++++.... ++..+..+
T Consensus 125 ~~~~vlviDe~~~l~~------------------~~~~~l~~~l~~~~~~~~~i~~t~~~~~--------~~~~l~~r-- 176 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR------------------HSFNALLKTLEEPPEHVKFLLATTDPQK--------LPVTILSR-- 176 (250)
T ss_dssp SSSEEEEEETGGGSCH------------------HHHHHHHHHHHSCCTTEEEEEEESCGGG--------SCHHHHTT--
T ss_pred CCceEEEEECcccccH------------------HHHHHHHHHHhcCCCceEEEEEeCChHh--------CCHHHHHH--
Confidence 4688999999966521 2334566666544455666666654221 22233322
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhcc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFCS 340 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc~ 340 (342)
+..++++.++.+|...++..+.. .+.-.+++...++...|+|||+.+..+|.
T Consensus 177 ------~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 177 ------CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp ------SEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------hhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23589999999999999977654 34321454555677799999999988763
No 3
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=1e-07 Score=90.50 Aligned_cols=213 Identities=13% Similarity=0.135 Sum_probs=117.0
Q ss_pred EechhH-HHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhC---CeEEEEeCCccccccCCcceeccCCC
Q psy3261 45 LIRNCM-LELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHEN---NYLLVHIPWVLRWFAYPKEVSHSLTK 120 (342)
Q Consensus 45 lvR~~t-~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~---gwiVl~vP~~~~~~~~~~~~~~s~~~ 120 (342)
.-|+.. .+|.+.++. .........++|+|++|||||+++..+....... ++-++++......
T Consensus 23 ~gr~~e~~~l~~~l~~-~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~------------- 88 (386)
T 2qby_A 23 PHREDQIRKIASILAP-LYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID------------- 88 (386)
T ss_dssp TTCHHHHHHHHHSSGG-GGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-------------
T ss_pred CChHHHHHHHHHHHHH-HHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-------------
Confidence 346633 334445544 2123556789999999999999999988776554 7777777432110
Q ss_pred CCccccHHHHHHHHHHHHHhCccccCCCCcccccceecCCCCCCCCCCCHHHHHHhhcccccchhHHHHHHHHHHhcccc
Q psy3261 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLFTEIKKLST 200 (342)
Q Consensus 121 ~~~~~qP~~a~~~L~~~~~~N~~~L~~~~l~~s~~~~~~~~e~~~~g~tL~dlv~~gi~~~~~a~~~~~~l~~EL~~~~~ 200 (342)
....++..+ +. .+... . ...+.+. ...+..+.+.+..
T Consensus 89 --------~~~~~~~~i-------~~--~l~~~----~-----~~~~~~~--------------~~~~~~l~~~l~~--- 125 (386)
T 2qby_A 89 --------TPYRVLADL-------LE--SLDVK----V-----PFTGLSI--------------AELYRRLVKAVRD--- 125 (386)
T ss_dssp --------SHHHHHHHH-------TT--TTSCC----C-----CSSSCCH--------------HHHHHHHHHHHHT---
T ss_pred --------CHHHHHHHH-------HH--HhCCC----C-----CCCCCCH--------------HHHHHHHHHHHhc---
Confidence 012234444 44 33110 0 0112222 2334445555543
Q ss_pred CCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhh
Q psy3261 201 EGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLK 279 (342)
Q Consensus 201 ~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg 279 (342)
...|++|.+|++..+..... -.+...+++.+.. .-.+..+|++++.... .. .+...+..
T Consensus 126 -~~~~~vlilDE~~~l~~~~~--------------~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~-~~----~~~~~~~~ 185 (386)
T 2qby_A 126 -YGSQVVIVLDEIDAFVKKYN--------------DDILYKLSRINSEVNKSKISFIGITNDVKF-VD----LLDPRVKS 185 (386)
T ss_dssp -CCSCEEEEEETHHHHHHSSC--------------STHHHHHHHHHHSCCC--EEEEEEESCGGG-GG----GCTTHHHH
T ss_pred -cCCeEEEEEcChhhhhccCc--------------CHHHHHHhhchhhcCCCeEEEEEEECCCCh-Hh----hhCHHHhc
Confidence 25699999999988765432 2344455555532 2234455666554210 00 01112222
Q ss_pred hcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCC--cc-CcchHHHHHHhhC---CCHHHHhhhcc
Q psy3261 280 KAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKW--LQ-TSEGREEIAFLTK---RVPQKMYEFCS 340 (342)
Q Consensus 280 ~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~--l~-~e~~~~el~~lSg---GNP~~l~~lc~ 340 (342)
+ +. + ..+.++.|+.+|...++......+. .. +++....+...++ |||+.+.++|.
T Consensus 186 r--~~---~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~ 246 (386)
T 2qby_A 186 S--LS---E-EEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLR 246 (386)
T ss_dssp T--TT---T-EEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred c--CC---C-eeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2 10 0 2589999999999999987655322 11 3444445666888 99999888763
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.74 E-value=6.6e-07 Score=85.42 Aligned_cols=208 Identities=10% Similarity=0.095 Sum_probs=113.3
Q ss_pred Eech-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhC--------CeEEEEeCCccccccCCccee
Q psy3261 45 LIRN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHEN--------NYLLVHIPWVLRWFAYPKEVS 115 (342)
Q Consensus 45 lvR~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~--------gwiVl~vP~~~~~~~~~~~~~ 115 (342)
.-|+ ...+|.+.++. .........++|+|++|||||+++..+...+... ++.++++...... +
T Consensus 23 ~gr~~~~~~l~~~l~~-~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----- 94 (384)
T 2qby_B 23 PFREDILRDAAIAIRY-FVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG--G----- 94 (384)
T ss_dssp TTCHHHHHHHHHHHHH-HHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC--S-----
T ss_pred CChHHHHHHHHHHHHH-HHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC--C-----
Confidence 3466 34445556665 2223445689999999999999998888876554 7888777432110 0
Q ss_pred ccCCCCCccccHHHHHHHHHHHHHhCccccCCCCcccccceecCCCCCCCCCCCHHHHHHhhcccccchhHHHHHHHHHH
Q psy3261 116 HSLTKEGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLFTEI 195 (342)
Q Consensus 116 ~s~~~~~~~~qP~~a~~~L~~~~~~N~~~L~~~~l~~s~~~~~~~~e~~~~g~tL~dlv~~gi~~~~~a~~~~~~l~~EL 195 (342)
+ .-.....+++.+. . ... ...+.+ ....+..+.+.+
T Consensus 95 -~--------~~~~~~~l~~~l~-------~---~~~-----------~~~~~~--------------~~~~~~~l~~~l 130 (384)
T 2qby_B 95 -T--------PQAVLSSLAGKLT-------G---FSV-----------PKHGIN--------------LGEYIDKIKNGT 130 (384)
T ss_dssp -C--------HHHHHHHHHHHHH-------C---SCC-----------CSSSSC--------------THHHHHHHHHHH
T ss_pred -C--------HHHHHHHHHHHhc-------C---CCC-----------CCCCCC--------------HHHHHHHHHHHh
Confidence 0 0011222233221 1 110 001111 123344445545
Q ss_pred hccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccch-HHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcch
Q psy3261 196 KKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTL-TRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLP 274 (342)
Q Consensus 196 ~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l-~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p 274 (342)
.. ..+ +|.|||+..+..... ..+ ...+++.. .+..+|++++... ... .+.
T Consensus 131 ~~-----~~~-vlilDEi~~l~~~~~--------------~~~~l~~l~~~~----~~~~iI~~t~~~~-~~~----~l~ 181 (384)
T 2qby_B 131 RN-----IRA-IIYLDEVDTLVKRRG--------------GDIVLYQLLRSD----ANISVIMISNDIN-VRD----YME 181 (384)
T ss_dssp SS-----SCE-EEEEETTHHHHHSTT--------------SHHHHHHHHTSS----SCEEEEEECSSTT-TTT----TSC
T ss_pred cc-----CCC-EEEEECHHHhccCCC--------------CceeHHHHhcCC----cceEEEEEECCCc-hHh----hhC
Confidence 33 234 999999988754421 122 33333333 4445555554332 101 122
Q ss_pred hHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCC--cc-CcchHHHHHHhhC---CCHHHHhhhcc
Q psy3261 275 LYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKW--LQ-TSEGREEIAFLTK---RVPQKMYEFCS 340 (342)
Q Consensus 275 ~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~--l~-~e~~~~el~~lSg---GNP~~l~~lc~ 340 (342)
..+..+ | .. .+.++.|+.+|...++......++ .. +++....+.-.++ |||+.+.++|.
T Consensus 182 ~~l~sr--~---~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 182 PRVLSS--L---GP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp HHHHHT--C---CC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHhc--C---CC--eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 233332 2 11 489999999999999988765432 11 4544555666888 99999887763
No 5
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=4.1e-07 Score=86.80 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=115.2
Q ss_pred Eech-hHHHHHHHHHhccCCCCCCC--eEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEeCCccccccCCcceeccCCC
Q psy3261 45 LIRN-CMLELVGYLKSMTNFDRPSP--RFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHIPWVLRWFAYPKEVSHSLTK 120 (342)
Q Consensus 45 lvR~-~t~el~~~l~~~~~~~~~~~--r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~vP~~~~~~~~~~~~~~s~~~ 120 (342)
.-|+ ...+|.+.++.... ..... .++|+|++|||||+++..+....... +|-++++.....
T Consensus 20 ~gr~~~~~~l~~~l~~~~~-~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-------------- 84 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLR-NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-------------- 84 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHH-STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC--------------
T ss_pred CChHHHHHHHHHHHHHHHc-CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC--------------
Confidence 3466 44455566665222 22334 79999999999999999888877766 688877742211
Q ss_pred CCccccHHHHHHHHHHHHHhCccccCCCCcccccceecCCCCCCCCCCCHHHHHHhhcccccchhHHHHHHHHHHhcccc
Q psy3261 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLFTEIKKLST 200 (342)
Q Consensus 121 ~~~~~qP~~a~~~L~~~~~~N~~~L~~~~l~~s~~~~~~~~e~~~~g~tL~dlv~~gi~~~~~a~~~~~~l~~EL~~~~~ 200 (342)
. . ...+++.+ +. .+... ....+.+.. ..+..+.+.+...
T Consensus 85 ---~-~---~~~~~~~l-------~~--~l~~~---------~~~~~~~~~--------------~~~~~l~~~l~~~-- 123 (389)
T 1fnn_A 85 ---R-N---FTAIIGEI-------AR--SLNIP---------FPRRGLSRD--------------EFLALLVEHLRER-- 123 (389)
T ss_dssp ---C-S---HHHHHHHH-------HH--HTTCC---------CCSSCCCHH--------------HHHHHHHHHHHHT--
T ss_pred ---C-C---HHHHHHHH-------HH--HhCcc---------CCCCCCCHH--------------HHHHHHHHHHhhc--
Confidence 0 0 11223333 11 11100 001122222 2333344444432
Q ss_pred CCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCC----CCeEEEEEeCCCCCCCCCccCcchhH
Q psy3261 201 EGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDW----NNGAIVLALSPRANLPDRRESHLPLY 276 (342)
Q Consensus 201 ~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~----~~G~vv~AtS~~~~~~~~~~~~~p~~ 276 (342)
..|++|.+|++..+ + -.....|++++..-. .+-.+|++++... ... . +...
T Consensus 124 --~~~~vlilDE~~~l----~--------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~-~~~---~-l~~~ 178 (389)
T 1fnn_A 124 --DLYMFLVLDDAFNL----A--------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDA-VLN---N-LDPS 178 (389)
T ss_dssp --TCCEEEEEETGGGS----C--------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH-HHH---T-SCHH
T ss_pred --CCeEEEEEECcccc----c--------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCch-HHH---H-hCHH
Confidence 56899999999776 1 234555556654211 2445555544321 000 0 1112
Q ss_pred HhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhC----CCccCcchHHHHHHhh---------CCCHHHHhhhcc
Q psy3261 277 MLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYESK----KWLQTSEGREEIAFLT---------KRVPQKMYEFCS 340 (342)
Q Consensus 277 llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~----~~l~~e~~~~el~~lS---------gGNP~~l~~lc~ 340 (342)
+..+.+. ..+.++.|+.+|...++...... +.+ +++....+...+ +|||+.+..+|.
T Consensus 179 ~~~r~~~------~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 179 TRGIMGK------YVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HHHHHTT------CEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred hhhcCCC------ceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 2222211 13899999999999999877653 233 455555677788 899999988874
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.69 E-value=5.3e-07 Score=86.80 Aligned_cols=214 Identities=12% Similarity=0.096 Sum_probs=112.7
Q ss_pred EEech-hHHHHHHHH-HhccCC-CCCCCeEEE--EccCCCcHHHHHHHHHHHHHhC------CeEEEEeCCccccccCCc
Q psy3261 44 ILIRN-CMLELVGYL-KSMTNF-DRPSPRFVL--YGEHGVGKSMALVYALQYAHEN------NYLLVHIPWVLRWFAYPK 112 (342)
Q Consensus 44 ~lvR~-~t~el~~~l-~~~~~~-~~~~~r~vL--~G~~GsGKS~~L~q~~~~A~~~------gwiVl~vP~~~~~~~~~~ 112 (342)
+.-|+ +..+|.+.+ +..... ......++| +|++|+|||+++.++...+... ++.++++.....
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 97 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA------ 97 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC------
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC------
Confidence 44466 444555566 552221 034557888 9999999999999998876653 788888753211
Q ss_pred ceeccCCCCCccccHHHHHHHHHHHHHhCccccCCCCcccccceecCCCCCCCCCCCHHHHHHhhcccccchhHHHHHHH
Q psy3261 113 EVSHSLTKEGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRVKYASDVVDVLF 192 (342)
Q Consensus 113 ~~~~s~~~~~~~~qP~~a~~~L~~~~~~N~~~L~~~~l~~s~~~~~~~~e~~~~g~tL~dlv~~gi~~~~~a~~~~~~l~ 192 (342)
. . ...+++.+ +. .+... ....+.+. ...+..+.
T Consensus 98 --------~----~---~~~~~~~l-------~~--~l~~~---------~~~~~~~~--------------~~~~~~l~ 130 (412)
T 1w5s_A 98 --------P----N---LYTILSLI-------VR--QTGYP---------IQVRGAPA--------------LDILKALV 130 (412)
T ss_dssp --------C----S---HHHHHHHH-------HH--HHTCC---------CCCTTCCH--------------HHHHHHHH
T ss_pred --------C----C---HHHHHHHH-------HH--HhCCC---------CCCCCCCH--------------HHHHHHHH
Confidence 0 0 11233333 11 11100 00012121 23344455
Q ss_pred HHHhccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-C--C--CCeEEEEEeCCCCCCCC
Q psy3261 193 TEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-D--W--NNGAIVLALSPRANLPD 267 (342)
Q Consensus 193 ~EL~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~--~--~~G~vv~AtS~~~~~~~ 267 (342)
+.|... ..|++|.|||+..+..... ..-.....+.+++.. . - .+..+|++++...
T Consensus 131 ~~l~~~----~~~~llvlDe~~~l~~~~~------------~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~---- 190 (412)
T 1w5s_A 131 DNLYVE----NHYLLVILDEFQSMLSSPR------------IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR---- 190 (412)
T ss_dssp HHHHHH----TCEEEEEEESTHHHHSCTT------------SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETH----
T ss_pred HHHHhc----CCeEEEEEeCHHHHhhccC------------cchHHHHHHHHHHHhcccCCCCceEEEEEEecccc----
Confidence 555432 5699999999977754210 002222223333321 1 1 2334555543221
Q ss_pred CccCcchhHHh---hhcCCCCCCCc-ceeecCCCCHHHHHHHHHHHHhC----CCccCcchHHHHHHhhC------CCHH
Q psy3261 268 RRESHLPLYML---KKAGFESIDPF-VPIHVPELNDEEFHNLLNLYESK----KWLQTSEGREEIAFLTK------RVPQ 333 (342)
Q Consensus 268 ~~~~~~p~~ll---g~~g~~~~dP~-~~i~v~~~s~~E~~~ll~yy~~~----~~l~~e~~~~el~~lSg------GNP~ 333 (342)
+...+. ... ..++ ..+.++.|+.+|+..++...... +.+ +++....+.-.|+ |||+
T Consensus 191 -----~~~~l~~~~~~~----~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 191 -----ALSYMREKIPQV----ESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW-EPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp -----HHHHHHHHCHHH----HTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC-CHHHHHHHHHHHCGGGTSCCCHH
T ss_pred -----HHHHHhhhcchh----hhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC-ChHHHHHHHHHHHHhccCCCcHH
Confidence 111111 000 0111 12899999999999999766442 123 3444556777999 9999
Q ss_pred HHhhhcc
Q psy3261 334 KMYEFCS 340 (342)
Q Consensus 334 ~l~~lc~ 340 (342)
.+..+|.
T Consensus 261 ~~~~l~~ 267 (412)
T 1w5s_A 261 RAIVALK 267 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888763
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.68 E-value=8.1e-07 Score=83.23 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=36.7
Q ss_pred eeecCCCCHHHHHHHHHHHH-hCCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPELNDEEFHNLLNLYE-SKKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~~s~~E~~~ll~yy~-~~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.++++.||.+|+..++.... ..|.-.+++...++...|||||..+..+|
T Consensus 197 ~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~ 246 (350)
T 2qen_A 197 EVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFG 246 (350)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 58999999999999986543 33432144455678889999999888776
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.66 E-value=6.8e-07 Score=77.59 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=64.6
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.|||++.+... ....|+.++.....+..+|++++.... +...+..+
T Consensus 101 ~~~~vliiDe~~~l~~~------------------~~~~l~~~l~~~~~~~~~i~~~~~~~~--------~~~~l~~r-- 152 (226)
T 2chg_A 101 APFKIIFLDEADALTAD------------------AQAALRRTMEMYSKSCRFILSCNYVSR--------IIEPIQSR-- 152 (226)
T ss_dssp CSCEEEEEETGGGSCHH------------------HHHHHHHHHHHTTTTEEEEEEESCGGG--------SCHHHHTT--
T ss_pred cCceEEEEeChhhcCHH------------------HHHHHHHHHHhcCCCCeEEEEeCChhh--------cCHHHHHh--
Confidence 46889999999766331 234455555544445666666543210 12233322
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+..++++.++.+|...++..+.. .|.--+++....+...++|||+.+..++
T Consensus 153 ------~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 ------CAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ------SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------CceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22489999999999999976654 2432145555567779999999987764
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.60 E-value=1.3e-06 Score=81.97 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=69.3
Q ss_pred HHHHHHHHhccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCC
Q psy3261 188 VDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPD 267 (342)
Q Consensus 188 ~~~l~~EL~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~ 267 (342)
+..+++.|.... . .|++|+|||++.+..... ..+...+..+... ..+..+|++.+....
T Consensus 124 ~~~l~~~l~~~~--~-~~~vlvlDe~~~~~~~~~--------------~~~~~~l~~~~~~-~~~~~~i~~g~~~~~--- 182 (357)
T 2fna_A 124 FANLLESFEQAS--K-DNVIIVLDEAQELVKLRG--------------VNLLPALAYAYDN-LKRIKFIMSGSEMGL--- 182 (357)
T ss_dssp HHHHHHHHHHTC--S-SCEEEEEETGGGGGGCTT--------------CCCHHHHHHHHHH-CTTEEEEEEESSHHH---
T ss_pred HHHHHHHHHhcC--C-CCeEEEEECHHHhhccCc--------------hhHHHHHHHHHHc-CCCeEEEEEcCchHH---
Confidence 556667776543 1 399999999977654212 2333444443332 135666776653210
Q ss_pred CccCcchhHHhhhcCC--CCCCC-cceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 268 RRESHLPLYMLKKAGF--ESIDP-FVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 268 ~~~~~~p~~llg~~g~--~~~dP-~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+ ..+++.... ..... ...+++++||.+|+..++..... .+.- .++ ..++...|||||..+..+|
T Consensus 183 -----l-~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~-~~~i~~~t~G~P~~l~~~~ 250 (357)
T 2fna_A 183 -----L-YDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD-YEVVYEKIGGIPGWLTYFG 250 (357)
T ss_dssp -----H-HHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC-HHHHHHHHCSCHHHHHHHH
T ss_pred -----H-HHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc-HHHHHHHhCCCHHHHHHHH
Confidence 0 011100000 00111 13589999999999999975432 3332 122 2678889999999988776
No 10
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=3.2e-06 Score=74.74 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=37.2
Q ss_pred eeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.++++.++.+|...++..+.. .|+--+++....+...++||++++..++
T Consensus 168 ~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 168 TYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 488999999999999987754 3432245555567778999999998765
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=1.5e-05 Score=73.01 Aligned_cols=119 Identities=19% Similarity=0.327 Sum_probs=68.5
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhh---cC-CCCCeEEEEEeCCCCCCCCCccCcchhHHh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLV---QS-DWNNGAIVLALSPRANLPDRRESHLPLYML 278 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~---~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~ll 278 (342)
..|.+|.+|+++.+......- .....-...+.+..++ .+ ....+++|.+++... ..++..++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~-------~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~-------~~l~~~l~ 174 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDA-------LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP-------DILDPAIL 174 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSS-------CCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG-------GGBCHHHH
T ss_pred cCCeEEEEECHHHhcccCccc-------cCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc-------hhcCHHHc
Confidence 457889999999987653200 1111112223333333 22 334556666665432 11333444
Q ss_pred hhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 279 KKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 279 g~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
....|+. .+.++.++.+|...+++.+...--+..+....++...+.| +|+++..+|.
T Consensus 175 ~~~Rf~~-----~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 175 RPGRFDR-----IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp STTSEEE-----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCcCCe-----EEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 3222321 4788999999999999988765444333345566666665 9999998874
No 12
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=2.2e-05 Score=74.57 Aligned_cols=109 Identities=6% Similarity=0.117 Sum_probs=64.8
Q ss_pred eEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCC----CCCccCcchhHHhhh
Q psy3261 205 RTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANL----PDRRESHLPLYMLKK 280 (342)
Q Consensus 205 pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~----~~~~~~~~p~~llg~ 280 (342)
|.+|.||+++.+- -.....|++++.... ..+++++++..... .......++..+..+
T Consensus 190 ~~vl~IDEi~~l~------------------~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR 250 (368)
T 3uk6_A 190 PGVLFIDEVHMLD------------------IESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDR 250 (368)
T ss_dssp BCEEEEESGGGSB------------------HHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTT
T ss_pred CceEEEhhccccC------------------hHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhh
Confidence 6788899997652 234456666665432 33555555532100 000011233344433
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhC-CCccCcchHHHHHHhhC-CCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESK-KWLQTSEGREEIAFLTK-RVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~-~~l~~e~~~~el~~lSg-GNP~~l~~lc~ 340 (342)
+..+.++.++.+|...+++..... +.--+++....+...+. |||+++..+|.
T Consensus 251 --------~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 251 --------LLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp --------EEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --------ccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 234799999999999999876554 33214544555666888 99999998874
No 13
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=7.5e-05 Score=72.91 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=70.6
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.+|++-++++.-. ... ..-+...-.++..|+..+.| +-.++++|.|+|... + .+...+++.-
T Consensus 240 ~aP~IIFiDEiDai~~~R~--~~~--~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrp---d----~LDpAllRpG 308 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRV--EGS--GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRL---D----ILDPALLRPG 308 (405)
T ss_dssp TCSEEEEEESSSCCTTSCS--CSS--SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCS---S----SSCHHHHSTT
T ss_pred hCCceEeeecchhhccCCC--CCC--CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCCh---h----hCCHhHcCCC
Confidence 4689999999998876522 000 00011112344555555555 334556555544332 1 1334565433
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHH-hhCCCHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAF-LTKRVPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~-lSgGNP~~l~~lc~ 340 (342)
.|+. .|+|+.-+.++-..+++.|...--+..+....+|-- .-|-++.++..+|.
T Consensus 309 RfD~-----~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 309 RIDR-----KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp SSCC-----EEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cCce-----EEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3543 478888888999999998876544422223345544 44679999999984
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.1e-05 Score=74.54 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=39.7
Q ss_pred ch-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhC-------CeEEEEeC
Q psy3261 47 RN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHEN-------NYLLVHIP 102 (342)
Q Consensus 47 R~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-------gwiVl~vP 102 (342)
|+ +..+|...|.. +-...+...++|+|++|||||++...++.-..+. ++.+++|.
T Consensus 25 Re~E~~~i~~~L~~-~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 25 QVEDFTRIFLPIYD-SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp HHHHHHHHHHHHHH-HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 44 55566667766 3344678899999999999999999988766532 45556653
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.26 E-value=8.8e-05 Score=70.03 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=67.7
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.||++.++..... -.. ....-.+...|+..+.+- ...+++|.+++... . .+...++.+
T Consensus 104 ~~~~vl~iDEid~l~~~~~-~~~------~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~---~----~ld~al~rR 169 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRS-ENE------SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP---W----VLDSAIRRR 169 (322)
T ss_dssp TSSEEEEEETTTGGGCCSS-SCC------TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT---T----TSCHHHHHT
T ss_pred cCCcEEEeecHHHhccccc-ccc------chHHHHHHHHHHHHHhcccccCCCEEEEEecCCc---c----cCCHHHHhh
Confidence 3577888999999876532 100 011114555566666542 23455544444321 1 133345543
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
|+. .+.++..+.++-..++..+....-.. .+....++-..|.| +|+++..+|.
T Consensus 170 --f~~-----~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 170 --FEK-----RIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp --CCE-----EEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred --cCe-----EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 432 37888899999999998876544332 34444455556655 6999999884
No 16
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.24 E-value=1.7e-05 Score=75.18 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=66.1
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.||++..+-. .....|++++.....+..+|++++.... ++..+..+
T Consensus 118 ~~~~vliiDe~~~l~~------------------~~~~~Ll~~le~~~~~~~~Il~~~~~~~--------l~~~l~sr-- 169 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------------------HSFNALLKTLEEPPEHVKFLLATTDPQK--------LPVTILSR-- 169 (373)
T ss_dssp SSSEEEEEECGGGSCH------------------HHHHHHHHHHHSCCSSEEEEEEESCGGG--------SCHHHHTT--
T ss_pred CCeEEEEEECcchhcH------------------HHHHHHHHHHhcCCCceEEEEEeCChHh--------CcHHHHhh--
Confidence 4567888999965521 2345667777655556667777653221 22223222
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
...++++.++.+|...++..+.. .|+-.+++....+...++|||+.+..+|
T Consensus 170 ------~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 170 ------CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp ------SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred ------eeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 13489999999999999976654 3443244445557779999999998776
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.2e-05 Score=74.52 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=62.6
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.||++..+... ....|++++.....+..+|++++... . ++..+..+
T Consensus 106 ~~~~viiiDe~~~l~~~------------------~~~~L~~~le~~~~~~~~il~~~~~~------~--l~~~l~sr-- 157 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAG------------------AQQALRRTMELYSNSTRFAFACNQSN------K--IIEPLQSQ-- 157 (323)
T ss_dssp TCCEEEEEESGGGSCHH------------------HHHTTHHHHHHTTTTEEEEEEESCGG------G--SCHHHHTT--
T ss_pred CCceEEEEECcccCCHH------------------HHHHHHHHHhccCCCceEEEEeCChh------h--chhHHHhh--
Confidence 34788999999665321 12334555544445566676664321 1 12223222
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
...++++.++.+|...++..... .|+--+++....+...++|||+.+..++
T Consensus 158 ------~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 158 ------CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp ------SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12489999999999999976643 3432145545567779999999876654
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.20 E-value=0.00012 Score=68.95 Aligned_cols=117 Identities=10% Similarity=0.122 Sum_probs=68.5
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.||++.++...... .. ....-.+...|+..+.+- ...+++|.+++... . .++..+..+
T Consensus 109 ~~~~vl~iDEid~l~~~~~~---~~----~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~---~----~ld~al~~R 174 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGE---GE----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP---W----QLDSAIRRR 174 (322)
T ss_dssp TSSEEEEEECGGGGSCC-------------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG---G----GSCHHHHHH
T ss_pred cCCeEEEechhhhhhccCCC---Cc----chHHHHHHHHHHHHhccccccCCceEEEEecCCh---h----hCCHHHHcc
Confidence 45778889999988764220 00 001124455566666542 34556555554321 1 133445543
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
|+. .+.++..+.+|-..+++.+....-.. .+....++--.|.| +++++..+|.
T Consensus 175 --f~~-----~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 175 --FER-----RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp --CCE-----EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred --cCe-----EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 422 37888899999999999887654432 34444455556665 9999999884
No 19
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.00013 Score=72.41 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=67.6
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.+|++-+++..-. . ....-+.........|+..+.| .-.++++|.++|... + .+...+++.-
T Consensus 301 ~aP~IIfiDEiDai~~~R~--~--~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp---d----~LDpALlRpG 369 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARF--D--DGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP---N----TLDPALLRPG 369 (467)
T ss_dssp TCSEEEEEECCTTTSBCCS--S--SSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT---T----SBCHHHHSTT
T ss_pred cCCceEeeccccccccccc--C--cCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc---c----cCChhhhccc
Confidence 4699999999988876521 0 1111111111223334444434 334555555544322 1 1334565433
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHh-hCCCHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFL-TKRVPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~l-SgGNP~~l~~lc~ 340 (342)
.|+. .|+|+.-+.++-..+++.|...--+..+-...+|--+ .|-++.++..+|.
T Consensus 370 RFD~-----~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 370 RIDR-----KVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp TCCE-----EECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cccE-----EEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3543 3788878888989999988765444222223344444 4669999999984
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=5.7e-05 Score=70.01 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=64.2
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.||+++.+.. .....|++++.....+..+|++++.... ++..+..+
T Consensus 109 ~~~~vliiDe~~~l~~------------------~~~~~L~~~le~~~~~~~~i~~~~~~~~--------l~~~l~sr-- 160 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ------------------DAQQALRRTMEMFSSNVRFILSCNYSSK--------IIEPIQSR-- 160 (327)
T ss_dssp CSCEEEEEETGGGSCH------------------HHHHHHHHHHHHTTTTEEEEEEESCGGG--------SCHHHHHT--
T ss_pred CCCeEEEEeCCCcCCH------------------HHHHHHHHHHHhcCCCCeEEEEeCCccc--------cCHHHHhh--
Confidence 3467888999976632 1234566666544445566666543211 22223322
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+..+.++.++.+|+..++.......-+. +++....+...++|||+.+..++
T Consensus 161 ------~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 161 ------CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp ------EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1237889999999999998775543222 55555667779999999887654
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.15 E-value=4.1e-05 Score=70.74 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=63.9
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.||++..+... ....|++++.....+..+|++++.... +...+..+
T Consensus 101 ~~~~vliiDe~~~l~~~------------------~~~~L~~~le~~~~~~~~i~~~~~~~~--------l~~~l~sr-- 152 (319)
T 2chq_A 101 APFKIIFLDEADALTAD------------------AQAALRRTMEMYSKSCRFILSCNYVSR--------IIEPIQSR-- 152 (319)
T ss_dssp CCCEEEEEETGGGSCHH------------------HHHTTGGGTSSSSSSEEEEEEESCGGG--------SCHHHHTT--
T ss_pred CCceEEEEeCCCcCCHH------------------HHHHHHHHHHhcCCCCeEEEEeCChhh--------cchHHHhh--
Confidence 45788899999665321 223355555544455566666543210 12223222
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+..++++.++.+|...++.......-+. +++....+...++||++.+...+
T Consensus 153 ------~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 153 ------CAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp ------CEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred ------CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1248999999999999998776543232 55555567779999999987654
No 22
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=7e-05 Score=73.93 Aligned_cols=121 Identities=7% Similarity=0.033 Sum_probs=68.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCC-CCe-EEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDW-NNG-AIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~-~~G-~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.+|++-+++..-. . ....-+..--.....|+..+.|-. .++ +||+||..-.. +...+++.
T Consensus 273 ~~P~IifiDEiDai~~~R~--~--~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~--------LDpAllRp 340 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRF--S--EGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT--------LDPALLRP 340 (437)
T ss_dssp SCSEEEEEECCCSSSCCCS--S--SCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS--------SCTTTTST
T ss_pred cCCceeeeecccccccccc--c--CCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh--------hCHHHhCC
Confidence 4699999999988876521 0 011111111234455666665533 334 45555544221 22334433
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhh-CCCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLT-KRVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lS-gGNP~~l~~lc~ 340 (342)
-.|+. .|+|+.-+.++-..++..|...--+..+....++--.| |-++.++..+|.
T Consensus 341 GRfD~-----~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 341 GRLDR-----KVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp TSEEE-----EECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred Cccce-----eeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 22432 37788778888889998887654442232344555555 569999999884
No 23
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.7e-05 Score=76.85 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=68.5
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCcc-chHHHHHHhhcCC-CCCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRV-TLTRSVINLVQSD-WNNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l-~l~~~~~~~~~~~-~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.+|++-++++.-..-.+. ...+. .+...|+..+.|- -..+++|.|+|... +. +...+++.
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~-----~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp---~~----LD~AllRp 340 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKS-----GDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV---DV----LDPALLRS 340 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGG-----TTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC---CC----CCTTTCST
T ss_pred cCCeEEeecchhhhhhccCCCCCC-----CchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc---hh----cCHhHhcC
Confidence 358999999999887652200000 01111 3445566666553 34555555555432 11 22334332
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhh-CCCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLT-KRVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lS-gGNP~~l~~lc~ 340 (342)
-.|+. .|+++.-+.++-..+++.|...--+..+-...+|--.| |-++.++..+|.
T Consensus 341 GRfD~-----~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 341 GRLDR-----KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp TSEEE-----EEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred CceeE-----EEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 22432 37888788888899999887654442222334555554 569999999984
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=0.00012 Score=68.68 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=37.1
Q ss_pred eeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.+.++.++.+|...++..+....-+. +++....+...++|||+++..++
T Consensus 178 ~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 178 QFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 48999999999999998776543332 45445566668999999998765
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.08 E-value=5.3e-05 Score=70.52 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=37.5
Q ss_pred eeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.+.++.++.+|...+++.+....-+. +++....+...++|||+++..+|
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 48899999999999998876543222 45555667778999999998875
No 26
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00021 Score=70.33 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=67.0
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC-CCCeE-EEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD-WNNGA-IVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~-~~~G~-vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.++.+|++.+++..-..-...... ..-.++..|+..+.|- -..++ ||+||..-. .+...+++.
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~----~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~--------~LD~AllRp 331 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDR----EVQRILIELLTQMDGFDQSTNVKVIMATNRAD--------TLDPALLRP 331 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCC----HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS--------SCCHHHHSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCCh----HHHHHHHHHHHHhhCCCCCCCEEEEEecCChh--------hcChhhhcC
Confidence 469999999999988753211111110 0113455566666653 23444 455554322 134456543
Q ss_pred cCCCCCCCcceeecCCCC-HHHHHHHHHHHHhCCCccCcchHHHHHH-hhCCCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELN-DEEFHNLLNLYESKKWLQTSEGREEIAF-LTKRVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s-~~E~~~ll~yy~~~~~l~~e~~~~el~~-lSgGNP~~l~~lc~ 340 (342)
-.|+. .|++++++ .++-+.++..+...--+..+....++-. .-|-++.++..+|.
T Consensus 332 GRfd~-----~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 332 GRLDR-----KIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SSEEE-----EEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcceE-----EEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 23432 37888775 5555667787766544422323345544 45679999999984
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.03 E-value=0.00029 Score=63.32 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=57.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.||++..+..... -..... -..........|+..+.+ ....+++|.+++... . .++..+....
T Consensus 97 ~~~~vl~iDeid~l~~~~~-~~~~~~--~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~---~----~ld~~l~~~~ 166 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRS-TTMSGF--SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA---D----ILDGALMRPG 166 (262)
T ss_dssp TCSEEEEEECC----------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG---G----GGGSGGGSTT
T ss_pred cCCeEEEEeCcchhhcccc-ccccCc--cchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh---h----hcCHHHhcCC
Confidence 3588999999988865422 000000 011112333334443333 334455555555322 0 1222333221
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcch--HHHHHHhhCC-CHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEG--REEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~--~~el~~lSgG-NP~~l~~lc~ 340 (342)
.|+ ..+.++..+.+|...+++.+...--+..+.. ...+...+.| +|+++..+|.
T Consensus 167 R~~-----~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 167 RLD-----RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp SCC-----EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCC-----eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 232 1367888899999999988765433321211 2345556665 5778888773
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=0.00018 Score=67.83 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=64.3
Q ss_pred ceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCC
Q psy3261 204 CRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGF 283 (342)
Q Consensus 204 ~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~ 283 (342)
.|-++.+|+...+ .. .....|++++.....+..+|+++..... ++..+..+
T Consensus 134 ~~~vlilDE~~~L-~~-----------------~~~~~L~~~le~~~~~~~~Il~t~~~~~--------l~~~l~sR--- 184 (354)
T 1sxj_E 134 RYKCVIINEANSL-TK-----------------DAQAALRRTMEKYSKNIRLIMVCDSMSP--------IIAPIKSQ--- 184 (354)
T ss_dssp CCEEEEEECTTSS-CH-----------------HHHHHHHHHHHHSTTTEEEEEEESCSCS--------SCHHHHTT---
T ss_pred CCeEEEEeCcccc-CH-----------------HHHHHHHHHHHhhcCCCEEEEEeCCHHH--------HHHHHHhh---
Confidence 4667789998663 22 2245566666544445666776654321 22223222
Q ss_pred CCCCCcceeecCCCCHHHHHHHHHHHHhC-CCccC-cchHHHHHHhhCCCHHHHhhhc
Q psy3261 284 ESIDPFVPIHVPELNDEEFHNLLNLYESK-KWLQT-SEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 284 ~~~dP~~~i~v~~~s~~E~~~ll~yy~~~-~~l~~-e~~~~el~~lSgGNP~~l~~lc 339 (342)
...++++.++.+|....+...... |+--+ ++....+...++||+|.+..++
T Consensus 185 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 185 -----CLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp -----SEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----ceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 134899999999999999876543 44224 5555667779999999988765
No 29
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.02 E-value=0.00015 Score=69.28 Aligned_cols=117 Identities=10% Similarity=0.124 Sum_probs=67.0
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.||++..+......- .. ...-.+...|+..+.+- ...+++|.+++... . .++..++.+
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~---~~----~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~---~----~ld~al~rR 207 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEG---ES----EASRRIKTELLVQMNGVGNDSQGVLVLGATNIP---W----QLDSAIRRR 207 (355)
T ss_dssp TSSEEEEEECGGGGTC---------C----THHHHHHHHHHHHHHHCC---CCEEEEEEESCG---G----GSCHHHHHT
T ss_pred cCCeEEEEechHhhcccCCCC---cc----hHHHHHHHHHHHHhhcccccCCCeEEEeecCCc---c----cCCHHHHcc
Confidence 458889999998886542100 00 00113455566665542 23445555444321 1 133445543
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
|+. .+.++..+.+|...+++.+....-+. .+.....|...|.| +|+++..+|.
T Consensus 208 --f~~-----~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 208 --FER-----RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp --CCE-----EEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --cCE-----EEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 422 36788899999999998887654322 34444556667777 9999999984
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.00 E-value=0.00053 Score=61.87 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeE-EEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGA-IVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~-vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.++.+|++..+..... -. ...-....-.++..++..+.+ .-+.++ ||+||..... +...+...
T Consensus 103 ~~~~il~iDeid~l~~~~~-~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~--------l~~~l~r~ 170 (257)
T 1lv7_A 103 AAPCIIFIDEIDAVGRQRG-AG---LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV--------LDPALLRP 170 (257)
T ss_dssp TCSEEEEETTHHHHTCCCS-TT---SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT--------SCGGGGST
T ss_pred cCCeeehhhhhhhhccCCC-CC---cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh--------CCHHHcCC
Confidence 4588889999988765422 00 000011112344555555543 223444 4555443221 22233322
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
..|+. ++.++..+.+|-..+++.+...--+..+.....+-..+.| |++++..+|.
T Consensus 171 ~rf~~-----~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 171 GRFDR-----QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp TSSCE-----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCe-----EEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 22322 4777777888989999888765333222223455567788 9999998874
No 31
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00017 Score=70.85 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=66.3
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.+|++-+++..-..-.+.. +..--.....|+..+.| +-.++++|.|+|... +. +...+++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~----~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp---d~----LDpALlRpG 342 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGG----EREIQRTMLELLNQLDGFDDRGDVKVIMATNKI---ET----LDPALIRPG 342 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSS----CCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS---TT----CCTTSSCTT
T ss_pred cCCcEEEEehhhhhcccCCCCCCCc----cHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh---hh----cCHHHhcCC
Confidence 4699999999998877522011100 01111333344444444 344555554444322 11 222343322
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHH-hhCCCHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAF-LTKRVPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~-lSgGNP~~l~~lc~ 340 (342)
.|+. .|+|+.-+.++-+.+++.|...--+..+....+|-- .-|-++.++..+|.
T Consensus 343 RfD~-----~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 343 RIDR-----KILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp TEEE-----EECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred ceeE-----EEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 2332 377887788888899998876544422223344444 44679999999884
No 32
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.99 E-value=0.00019 Score=70.73 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=68.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.||++.+++.... -. . ....-.+...|+..+.+- ...+++|.+++... . .++..++.+
T Consensus 226 ~~~~vl~iDEid~l~~~~~-~~--~----~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~---~----~ld~al~rR 291 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRS-EN--E----SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP---W----VLDSAIRRR 291 (444)
T ss_dssp SCSEEEEESCTTTTCCCSS-CC--C----CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG---G----GSCHHHHTT
T ss_pred cCCeEEEEechHhhccCCC-Cc--c----ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc---c----ccCHHHHhh
Confidence 3577888999998876422 00 0 011124556666666552 23445544444321 1 133345542
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
|+. .+.++..+.++...++..+....-+. .+....+|-..|.| +++++..+|.
T Consensus 292 --f~~-----~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 292 --FEK-----RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp --CCE-----EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --cce-----EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 431 37788889999999998876543322 34444556667777 9999999884
No 33
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.92 E-value=0.00011 Score=68.69 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
....++|+|++|||||+++..+.......|+-+++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678999999999999999988888877777666663
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.91 E-value=0.00037 Score=68.84 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=66.4
Q ss_pred eEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCC-------CCCCCCccCcchhHH
Q psy3261 205 RTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPR-------ANLPDRRESHLPLYM 277 (342)
Q Consensus 205 pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~-------~~~~~~~~~~~p~~l 277 (342)
|-++.||+.+.+ + -.....|++.+.....+ ++|+++... .....+ ..+|..+
T Consensus 296 ~~VliIDEa~~l----~--------------~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~--~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHML----D--------------IECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSP--HGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGC----B--------------HHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEE--TTCCHHH
T ss_pred ceEEEEechhhc----C--------------HHHHHHHHHHhhccCCC-EEEEecCCcccccccccccccc--ccCChhH
Confidence 348889999877 2 34667788888766555 677676221 000001 1233334
Q ss_pred hhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhh-CCCHHHHhhhc
Q psy3261 278 LKKAGFESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLT-KRVPQKMYEFC 339 (342)
Q Consensus 278 lg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lS-gGNP~~l~~lc 339 (342)
..+ +..+.++.|+.+|...++..-.. .++--+++....+..++ +|+|+....+|
T Consensus 355 ~sR--------~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 355 LDR--------VMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HTT--------EEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred Hhh--------cceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 333 23478999999999999976543 23321455455566688 99999988776
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=0.00045 Score=65.32 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCC
Q psy3261 185 SDVVDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRAN 264 (342)
Q Consensus 185 ~~~~~~l~~EL~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~ 264 (342)
.+.+..+++++......+ .+-++.||+...+-. .-...|++++.....+..+|++++....
T Consensus 90 i~~ir~l~~~~~~~~~~~-~~kvviIdead~l~~------------------~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLG-GAKVVWVTDAALLTD------------------AAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp HHHHHHHHHHTTSCCTTS-SCEEEEESCGGGBCH------------------HHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred HHHHHHHHHHHhhccccC-CcEEEEECchhhcCH------------------HHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 344555666655432122 355667999965521 2346788888776677777887764321
Q ss_pred CCCCccCcchhHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCCHHHHhhhcc
Q psy3261 265 LPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRVPQKMYEFCS 340 (342)
Q Consensus 265 ~~~~~~~~~p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGNP~~l~~lc~ 340 (342)
++..+..+ ...++++.++.+|....+.... .+ +++....+..+|+|+|+....++.
T Consensus 151 --------l~~ti~SR--------c~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 151 --------LLATLRSR--------CRLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp --------SCHHHHTT--------SEEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred --------CcHHHhhc--------ceeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 22223222 1248889999999998887653 33 454445677799999999988764
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.00061 Score=65.05 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=66.0
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC---CCCeEE-EEEeCCCCCCCCCccCcchhHHh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD---WNNGAI-VLALSPRANLPDRRESHLPLYML 278 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~---~~~G~v-v~AtS~~~~~~~~~~~~~p~~ll 278 (342)
..|.+|.||++..+...... ..+.....+...|+..+.+. ....++ |+||.... .+...+.
T Consensus 175 ~~~~vl~iDEid~l~~~~~~-------~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~--------~l~~~l~ 239 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGD-------GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ--------EIDEAAR 239 (357)
T ss_dssp TCSEEEEEETHHHHTBC-------------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG--------GBCHHHH
T ss_pred cCCeEEEEeCchhhhccCCC-------CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh--------hCCHHHH
Confidence 34778889999888764220 01111234555555555542 233444 55543311 1333444
Q ss_pred hhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 279 KKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 279 g~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
.+ |. ..+.++..+.+|...++..+....-+. .++...++...|.| +|+++..+|.
T Consensus 240 ~R--f~-----~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 240 RR--LV-----KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp TT--CC-----EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hh--Cc-----eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 42 32 136788899999999998776543222 44444556667777 8999999885
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.80 E-value=0.00068 Score=65.35 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=60.8
Q ss_pred ceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC---CCCeE-EEEEeCCCCCCCCCccCcchhHHhh
Q psy3261 204 CRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD---WNNGA-IVLALSPRANLPDRRESHLPLYMLK 279 (342)
Q Consensus 204 ~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~---~~~G~-vv~AtS~~~~~~~~~~~~~p~~llg 279 (342)
.|.+|.||+++.++.... - ..+.....+...|+..+.+. ....+ ||+||.... .++..++.
T Consensus 207 ~~~il~iDEid~l~~~~~-~------~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~--------~l~~~l~~ 271 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLCERR-E------GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ--------ELDEAVLR 271 (389)
T ss_dssp SSEEEEEETGGGGC---------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG--------GCCHHHHT
T ss_pred CCeEEEEECchhhcccCC-C------ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch--------hcCHHHHc
Confidence 466778999999876532 0 00111123444455544431 22334 455553211 13334443
Q ss_pred hcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 280 KAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 280 ~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
+ |. ..+.++..+.+|...++..+....-.. .++...++...+.| +++++..+|.
T Consensus 272 R--~~-----~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 272 R--FI-----KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp T--CC-----EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred C--cc-----eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 32 137888899999999998877654332 34444455556655 7778888774
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.79 E-value=0.00027 Score=65.26 Aligned_cols=115 Identities=10% Similarity=0.098 Sum_probs=65.2
Q ss_pred EEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCCCC
Q psy3261 206 TFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFES 285 (342)
Q Consensus 206 VLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~~~ 285 (342)
-+|.||++..++.... . ....-.+...|++++...-.+..+|+++.... .+.. ..+...+..+ |.
T Consensus 132 ~vl~iDEid~l~~~~~------~---~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~--~~~~-~~~~~~l~~R--~~- 196 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDN------E---RDYGQEAIEILLQVMENNRDDLVVILAGYADR--MENF-FQSNPGFRSR--IA- 196 (309)
T ss_dssp SEEEEETGGGSCCCC------------CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH--HHHH-HHHSTTHHHH--EE-
T ss_pred CEEEEEChhhhccCCC------c---ccccHHHHHHHHHHHhcCCCCEEEEEeCChHH--HHHH-HhhCHHHHHh--CC-
Confidence 3788999988875422 0 11224566777777765545556666654321 0000 0000112222 21
Q ss_pred CCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHh--------hCCCHHHHhhhc
Q psy3261 286 IDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFL--------TKRVPQKMYEFC 339 (342)
Q Consensus 286 ~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~l--------SgGNP~~l~~lc 339 (342)
..+.++.++.+|...+++.+....-+. +++....+.-. ..||.+++.++|
T Consensus 197 ----~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 197 ----HHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp ----EEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred ----eEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 258999999999999998876643333 44333333333 349999998876
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.78 E-value=0.001 Score=61.83 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=65.2
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CC-CCeEEEEEeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DW-NNGAIVLALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~-~~G~vv~AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.++.+|++.++..... -...+.. ...-.+...|+..+.+ .- .+..||+||..... +...++..
T Consensus 107 ~~p~il~iDEid~l~~~~~-~~~~~~~---~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~--------ld~al~r~ 174 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARG-GNIGDGG---GAADRVINQILTEMDGMSTKKNVFIIGATNRPDI--------IDPAILRP 174 (301)
T ss_dssp TCSEEEEECSTTHHHHHHT-TTTCCSS---CSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG--------SCGGGGST
T ss_pred cCCeEEEEEChHHHhhccC-CCcCCcc---hHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc--------cChHHhcC
Confidence 3588999999988875421 0000000 0112345556666654 22 34444555533211 22233332
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhC-CCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTK-RVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSg-GNP~~l~~lc~ 340 (342)
..|+. .+.++..+.+|-..+++++....-+..+.....+-.++. -++.+|..+|.
T Consensus 175 gRf~~-----~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 175 GRLDQ-----LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp TSSCE-----EEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred Cccce-----EEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 22431 478888999999999988876543322222334444454 46778888873
No 40
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00042 Score=64.98 Aligned_cols=102 Identities=8% Similarity=-0.008 Sum_probs=64.3
Q ss_pred ceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCC
Q psy3261 204 CRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGF 283 (342)
Q Consensus 204 ~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~ 283 (342)
.+.+|.||+++.+... ....|++++.....+..+|++++... . +...+..+ +
T Consensus 133 ~~~vliiDE~~~l~~~------------------~~~~Ll~~le~~~~~~~~il~~~~~~------~--l~~~l~sR--~ 184 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD------------------AQSALRRTMETYSGVTRFCLICNYVT------R--IIDPLASQ--C 184 (353)
T ss_dssp SCEEEEETTGGGSCHH------------------HHHHHHHHHHHTTTTEEEEEEESCGG------G--SCHHHHHH--S
T ss_pred CceEEEEECCCccCHH------------------HHHHHHHHHHhcCCCceEEEEeCchh------h--Ccchhhcc--C
Confidence 4578889999776332 12456666665445666676664321 0 22233333 1
Q ss_pred CCCCCcceeecCCCCHHHHHHHHHHHHhC-CCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 284 ESIDPFVPIHVPELNDEEFHNLLNLYESK-KWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 284 ~~~dP~~~i~v~~~s~~E~~~ll~yy~~~-~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
..+.++.++.+|....+...... |+--+++....+...++||++.+..++
T Consensus 185 ------~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 ------SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ------EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ------ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 13889999999999999876543 442145555567779999999976654
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.75 E-value=0.00073 Score=66.81 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=62.2
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.++.||++..+-.. . -..|+..+.. ....+|+||+.... ..+...++.+
T Consensus 105 ~~~~iLfIDEI~~l~~~-~-----------------q~~LL~~le~--~~v~lI~att~n~~------~~l~~aL~sR-- 156 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKS-Q-----------------QDAFLPHIED--GTITFIGATTENPS------FELNSALLSR-- 156 (447)
T ss_dssp TCCEEEEEETTTCC------------------------CCHHHHHT--TSCEEEEEESSCGG------GSSCHHHHTT--
T ss_pred CCCcEEEEeChhhhCHH-H-----------------HHHHHHHHhc--CceEEEecCCCCcc------cccCHHHhCc--
Confidence 35778999999665321 1 1123444433 23566777765321 1133344433
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHhC-------CCcc-CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYESK-------KWLQ-TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~-------~~l~-~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+..+.+..++.+|...+++.+... .-+. +++....+...++||+|++..+|
T Consensus 157 ------~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ------ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp ------EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ------eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 224788999999999999988765 1121 44445556668999999998776
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.68 E-value=0.0028 Score=58.09 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=60.8
Q ss_pred ceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCC----CCeEEEEEeCCCCCCCCCccCcchhHHhh
Q psy3261 204 CRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDW----NNGAIVLALSPRANLPDRRESHLPLYMLK 279 (342)
Q Consensus 204 ~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~----~~G~vv~AtS~~~~~~~~~~~~~p~~llg 279 (342)
.|.+|.+|++.++..... -.. +...-.+...|+..+.+-. ..+++|.+++... . .++..++.
T Consensus 113 ~~~vl~iDEid~l~~~~~-~~~------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~---~----~l~~~l~~ 178 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERS-SSE------HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP---Q----ELDEAALR 178 (297)
T ss_dssp CSEEEEEETGGGTSBCC------------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG---G----GBCHHHHH
T ss_pred CCcEEEeccHHHhccccc-cCc------chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh---h----hCCHHHHh
Confidence 467777999998876533 111 0111133334444444321 1345554444321 0 13334444
Q ss_pred hcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCcc-CcchHHHHHHhhCCCH-HHHhhhcc
Q psy3261 280 KAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQ-TSEGREEIAFLTKRVP-QKMYEFCS 340 (342)
Q Consensus 280 ~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~-~e~~~~el~~lSgGNP-~~l~~lc~ 340 (342)
+ |.. .+.++..+.++-..++..+....-.. .++....+...|.|++ +++..+|.
T Consensus 179 R--~~~-----~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 179 R--FTK-----RVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp H--CCE-----EEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred h--CCe-----EEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3 321 36777788999899987776543221 3444445666777765 48877774
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.67 E-value=0.00079 Score=61.76 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=64.4
Q ss_pred eEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC---------CCCeEEEEEeCCCCCCCCCccCcchh
Q psy3261 205 RTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD---------WNNGAIVLALSPRANLPDRRESHLPL 275 (342)
Q Consensus 205 pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~---------~~~G~vv~AtS~~~~~~~~~~~~~p~ 275 (342)
+.+|.+|++..+..... ...-....-.+...|+.++.+. ....+++.+++.... ..+ ..++.
T Consensus 117 ~~vl~iDEi~~l~~~~~------~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~l~~ 187 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGE------YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV-ARP--SDLIP 187 (310)
T ss_dssp HCEEEEECGGGGSCCSS------CCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS-SCG--GGSCH
T ss_pred CCEEEEEChhhcCcccc------ccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCccc-CCc--ccCCH
Confidence 56788999988765421 0000111123456677777643 122344444432110 011 12334
Q ss_pred HHhhhcCCCCCCCcceeecCCCCHHHHHHHHHH----H--------HhCCC-cc-CcchHHHHHHhh--------CCCHH
Q psy3261 276 YMLKKAGFESIDPFVPIHVPELNDEEFHNLLNL----Y--------ESKKW-LQ-TSEGREEIAFLT--------KRVPQ 333 (342)
Q Consensus 276 ~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~y----y--------~~~~~-l~-~e~~~~el~~lS--------gGNP~ 333 (342)
.+..+ |. ..+.++.++.+|...+++. + ...+. +. +++....+.-.+ +||+|
T Consensus 188 ~l~~R--~~-----~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R 260 (310)
T 1ofh_A 188 ELQGR--LP-----IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 260 (310)
T ss_dssp HHHHT--CC-----EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTH
T ss_pred HHHhh--CC-----ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcH
Confidence 55544 21 2489999999999998872 1 12343 11 444444444455 79999
Q ss_pred HHhhhcc
Q psy3261 334 KMYEFCS 340 (342)
Q Consensus 334 ~l~~lc~ 340 (342)
++.++|.
T Consensus 261 ~l~~~l~ 267 (310)
T 1ofh_A 261 RLHTVME 267 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.63 E-value=0.00045 Score=68.08 Aligned_cols=48 Identities=6% Similarity=-0.094 Sum_probs=34.9
Q ss_pred eecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 292 IHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 292 i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+.++.++.+|...++..... .++--.++....+...++||+|++..++
T Consensus 258 i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 258 AKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 68888999999999977654 2332145444556668999999998765
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.0005 Score=68.99 Aligned_cols=105 Identities=9% Similarity=0.116 Sum_probs=61.8
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcC
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAG 282 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g 282 (342)
..+.+|.||++..+.... ......|+.++... +.-+|++++... .+. ++. + ...
T Consensus 147 ~~~~vliIDEid~l~~~~---------------~~~l~~L~~~l~~~--~~~iIli~~~~~-~~~-----l~~-l-~~r- 200 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD---------------RGGVGQLAQFCRKT--STPLILICNERN-LPK-----MRP-F-DRV- 200 (516)
T ss_dssp TTSEEEEECSGGGCCTTS---------------TTHHHHHHHHHHHC--SSCEEEEESCTT-SST-----TGG-G-TTT-
T ss_pred CCCeEEEEECCCccchhh---------------HHHHHHHHHHHHhc--CCCEEEEEcCCC-Ccc-----chh-h-Hhc-
Confidence 568899999997775431 12345566666532 222444433321 111 111 1 111
Q ss_pred CCCCCCcceeecCCCCHHHHHHHHHHHHh-CCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 283 FESIDPFVPIHVPELNDEEFHNLLNLYES-KKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 283 ~~~~dP~~~i~v~~~s~~E~~~ll~yy~~-~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
...+.++.++.+|...++..... .|+--.++....+...|+||++.+..++
T Consensus 201 ------~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 201 ------CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ------SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred ------eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12478899999999998866543 3442245555667778999999987764
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.0015 Score=65.22 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=68.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC-CCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD-WNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~-~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.+|++.++..... .... .....+...|+.++.+. -...++|.|++... . .++..+....
T Consensus 296 ~~p~iLfLDEId~l~~~~~----~~~~---~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~---~----~Ld~al~r~g 361 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAPKRE----KTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRP---N----SIDPALRRFG 361 (489)
T ss_dssp TCSEEEEEESHHHHCBCTT----SCCC---HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG---G----GBCGGGGSTT
T ss_pred cCCcEEEecchhhhccccc----cccc---hHHHHHHHHHHHHhhccccCCceEEEEecCCc---c----ccCHHHhCCC
Confidence 4588899999988876422 0000 11135666677777643 33445544444322 0 1223333322
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhh-CCCHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLT-KRVPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lS-gGNP~~l~~lc~ 340 (342)
.|.. .+.++..+.+|-..+++.+...--+..+....++-..+ |.+++++..+|.
T Consensus 362 Rf~~-----~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 362 RFDR-----EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp SSCE-----EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCce-----EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 3422 37888899999999999887654443222334555444 558999998874
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00085 Score=62.55 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=58.5
Q ss_pred ceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCC
Q psy3261 204 CRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGF 283 (342)
Q Consensus 204 ~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~ 283 (342)
.+-++.||++..+.+.. ....|+.++.....+..+|+++..... ++..+..+ +
T Consensus 105 ~~~vliiDEi~~l~~~~-----------------~~~~L~~~le~~~~~~~iI~~~n~~~~--------l~~~l~sR--~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-----------------SQRHLRSFMEAYSSNCSIIITANNIDG--------IIKPLQSR--C 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-----------------HHHHHHHHHHHHGGGCEEEEEESSGGG--------SCTTHHHH--S
T ss_pred CCeEEEEECCcccCcHH-----------------HHHHHHHHHHhCCCCcEEEEEeCCccc--------cCHHHHhh--C
Confidence 57788999997664221 234555555433345566776654321 22233333 1
Q ss_pred CCCCCcceeecCCCCHHHHHH----HHHHH----HhCCCccCc-chHHHHHHhhCCCHHHHhhhc
Q psy3261 284 ESIDPFVPIHVPELNDEEFHN----LLNLY----ESKKWLQTS-EGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 284 ~~~dP~~~i~v~~~s~~E~~~----ll~yy----~~~~~l~~e-~~~~el~~lSgGNP~~l~~lc 339 (342)
..++++.++.+|... +++.. ...|+--++ +....+...++||.|++...+
T Consensus 158 ------~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 158 ------RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp ------EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred ------cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 248999999998433 33332 233432145 545556678999999877654
No 48
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.0016 Score=64.93 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=65.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.+|.||++.++..... ....-.++....+...|+..+.+ .-+.+++|.+++.... .+...++...
T Consensus 107 ~~p~ILfIDEid~l~~~r~----~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~-------~Ld~allR~g 175 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRG----AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD-------ILDPALLRPG 175 (476)
T ss_dssp TCSEEEEEETGGGTCCC-------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG-------GSCGGGGSTT
T ss_pred cCCCEEEEechhhhhhhcc----cccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh-------hhchhhcccC
Confidence 3588999999988765421 00011122222333444443432 2234565555554321 1222344332
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCCH-HHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRVP-QKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGNP-~~l~~lc~ 340 (342)
.|+. .+.++..+.+|-..+++.+....-+..+.....+-..|.||. ++|..+|.
T Consensus 176 RFd~-----~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 176 RFDK-----KIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp SSCE-----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccee-----EeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 3432 377888888888899988876544422223445666787876 88988873
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.0035 Score=56.27 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=65.6
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|-++.+|++..+..... . ....-.......+..++..++| +-.+.+++.|++.... .++..++...
T Consensus 107 ~~~~i~~~Deid~l~~~~~--~--~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~-------~ld~~l~r~~ 175 (254)
T 1ixz_A 107 HAPCIVFIDEIDAVGRKRG--S--GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-------ILDPALLRPG 175 (254)
T ss_dssp SSSEEEEEETHHHHHC-------------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-------GSCGGGGSTT
T ss_pred cCCeEEEehhhhhhhcccC--c--cccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch-------hCCHHHcCCC
Confidence 4678899999977654321 0 0000011112444555555554 4456666666665321 1223344332
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
.|+. .+.++..+.+|-..+++.+...--+..+.....+-..+.| +++++..+|.
T Consensus 176 rf~~-----~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 176 RFDR-----QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp SSCE-----EEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCe-----EEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 3432 3778888899999999887653333222224445555655 5689988874
No 50
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=0.0061 Score=55.60 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=66.0
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcC-CCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQS-DWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~-~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|-++.+|++..+..... .. ...-.......+..++..+++ .-.+.+++.|++.... .+...++...
T Consensus 131 ~~~~i~~iDeid~l~~~~~--~~--~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~-------~ld~~l~r~~ 199 (278)
T 1iy2_A 131 HAPCIVFIDEIDAVGRKRG--SG--VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-------ILDPALLRPG 199 (278)
T ss_dssp SCSEEEEEETHHHHHCC------------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT-------SSCHHHHSTT
T ss_pred cCCcEEehhhhHhhhcccc--cc--cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch-------hCCHhHcCCC
Confidence 3578899999976654311 00 000011112344445555554 4455566666655321 1333444433
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCC-HHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRV-PQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGN-P~~l~~lc~ 340 (342)
.|+. .+.++..+.+|-..+++.+....-+..+.....+-..+.|| +++|..+|.
T Consensus 200 rf~~-----~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 200 RFDR-----QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp SSCC-----EEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCe-----EEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 3432 47888889999999999886543332222244455566665 488888774
No 51
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.0037 Score=58.84 Aligned_cols=101 Identities=8% Similarity=0.083 Sum_probs=61.8
Q ss_pred eEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCCC
Q psy3261 205 RTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFE 284 (342)
Q Consensus 205 pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~~ 284 (342)
+-++.||++..+-. ..-..|++++.....+..+|+++..... +...+..+
T Consensus 111 ~~viiiDe~~~l~~------------------~~~~~L~~~le~~~~~~~~il~~n~~~~--------i~~~i~sR---- 160 (340)
T 1sxj_C 111 FKLIILDEADAMTN------------------AAQNALRRVIERYTKNTRFCVLANYAHK--------LTPALLSQ---- 160 (340)
T ss_dssp CEEEEETTGGGSCH------------------HHHHHHHHHHHHTTTTEEEEEEESCGGG--------SCHHHHTT----
T ss_pred ceEEEEeCCCCCCH------------------HHHHHHHHHHhcCCCCeEEEEEecCccc--------cchhHHhh----
Confidence 56788999865421 1234566666554456666766643210 11223222
Q ss_pred CCCCcceeecCCCCHHHHHHHHHHHHhC-CCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 285 SIDPFVPIHVPELNDEEFHNLLNLYESK-KWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 285 ~~dP~~~i~v~~~s~~E~~~ll~yy~~~-~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
...+.+.+++.+|....+...... ++--+++....+..+|+|+++.+..++
T Consensus 161 ----~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 161 ----CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp ----SEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ----ceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 124788999999999988777643 432145445557779999999876554
No 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.47 E-value=0.005 Score=55.89 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=61.2
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC--CCCeEEEEEeCCCCCCCCCccCcchh-HHhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD--WNNGAIVLALSPRANLPDRRESHLPL-YMLK 279 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~--~~~G~vv~AtS~~~~~~~~~~~~~p~-~llg 279 (342)
..+.+|.+|++..+++... .. + ...-.+.+.|..++.+. ....++|.+++.... .++. .+.+
T Consensus 123 ~~~~vl~iDEid~l~~~~~-~~-~------~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~-------~l~~~~l~~ 187 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVP-IG-P------RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD-------VLQEMEMLN 187 (272)
T ss_dssp SSEEEEEECCHHHHTTCBT-TT-T------BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH-------HHHHTTCTT
T ss_pred cCCcEEEEEChhhhhccCC-CC-h------hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh-------hcchhhhhc
Confidence 3578899999999876532 11 0 01124566777776642 234555555554220 0110 1111
Q ss_pred hcCCCCCCCcceeecCCCCH-HHHHHHHHHHHhCCCccCcchHHHHHHhhCC-----CHHHHhhhc
Q psy3261 280 KAGFESIDPFVPIHVPELND-EEFHNLLNLYESKKWLQTSEGREEIAFLTKR-----VPQKMYEFC 339 (342)
Q Consensus 280 ~~g~~~~dP~~~i~v~~~s~-~E~~~ll~yy~~~~~l~~e~~~~el~~lSgG-----NP~~l~~lc 339 (342)
.|. ..+.++.++. +++..++.. .+-+ +++....+...+.| |.+++..++
T Consensus 188 --rf~-----~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 188 --AFS-----TTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp --TSS-----EEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred --ccc-----eEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 121 2478888887 676666654 2334 45545556667777 888877654
No 53
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.41 E-value=0.002 Score=68.17 Aligned_cols=118 Identities=11% Similarity=0.162 Sum_probs=69.3
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCC-CCeEEEE-EeCCCCCCCCCccCcchhHHhhh
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDW-NNGAIVL-ALSPRANLPDRRESHLPLYMLKK 280 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~-~~G~vv~-AtS~~~~~~~~~~~~~p~~llg~ 280 (342)
..|.+|.||++-+++.... ... ...+-.++..|+..+.+-. +++++|. ||..-.. ++..+.+.
T Consensus 296 ~~PsIIfIDEiDal~~~r~----~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~--------LD~ALrR~ 360 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKRE----KTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------IDPALRRF 360 (806)
T ss_dssp SCSEEEEEESGGGTCCTTT----TCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT--------SCTTTTST
T ss_pred cCCeEEEEehhcccccccC----CCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh--------cCHHHhCC
Confidence 4688999999988876522 011 1112356677777776532 3445544 4443322 22333332
Q ss_pred cCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHH-hhCCCHHHHhhhcc
Q psy3261 281 AGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAF-LTKRVPQKMYEFCS 340 (342)
Q Consensus 281 ~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~-lSgGNP~~l~~lc~ 340 (342)
..|+. .|+++.-+.++=..+++.+....-+..+....++-. ..|-.|.+|..+|.
T Consensus 361 GRFd~-----~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 361 GRFDR-----EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TSSCE-----EEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cccce-----EEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 23542 378888889999999998865443422223334444 55678999988884
No 54
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.30 E-value=0.017 Score=53.03 Aligned_cols=119 Identities=9% Similarity=0.115 Sum_probs=65.4
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhc-CCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQ-SDWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~-~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|.++.+|++..+..... .... . ..-.+...++..++ ++-.+.+++.|++.... .+...+++..
T Consensus 102 ~~p~i~~~Deid~~~~~r~---~~~~---~-~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~-------~LD~al~r~g 167 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRS---DRET---G-ASVRVVNQLLTEMDGLEARQQVFIMAATNRPD-------IIDPAILRPG 167 (274)
T ss_dssp TCSEEEEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG-------GSCHHHHSTT
T ss_pred cCCCeEeeehhhhhhcccC---CCcc---h-HHHHHHHHHHHhhhcccccCCEEEEeecCChh-------hCCHhhcCcc
Confidence 4688999999987654311 1110 0 11244555555555 45566666666654321 1223444332
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCC---ccCcchHHHHHHh---hCCCHHHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKW---LQTSEGREEIAFL---TKRVPQKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~---l~~e~~~~el~~l---SgGNP~~l~~lc~ 340 (342)
.|+. .|.|+.-+.++-..+++.+...+- +..+....++-.. .|-.+.+|..+|.
T Consensus 168 Rfd~-----~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 168 RLDK-----TLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp SSCE-----EEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred cCCe-----EEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 3542 377888889999999998875432 1112222334332 2788999998884
No 55
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.28 E-value=0.0053 Score=61.92 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 295 PELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 295 ~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.+|+.+|+..++.-+.....-..++...++.-.++|+|..+.-++
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHH
Confidence 589999999999877654222124445678889999999887654
No 56
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.27 E-value=0.007 Score=60.60 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=65.9
Q ss_pred CceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhc-CCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhc
Q psy3261 203 VCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQ-SDWNNGAIVLALSPRANLPDRRESHLPLYMLKKA 281 (342)
Q Consensus 203 ~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~-~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~ 281 (342)
..|-++.+|++.++..... .. ...-+.........++..++ ++-..+++|.|++..... +...++...
T Consensus 122 ~~p~il~IDEId~l~~~r~--~~--~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~-------LD~aLlr~g 190 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRG--SG--VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-------LDPALLRPG 190 (499)
T ss_dssp SSSCEEEEECGGGTCCCSS--SS--TTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG-------SCTTTSSTT
T ss_pred cCCCEEEEehHHHHHHhhc--cC--cCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh-------cCccccccc
Confidence 3577899999977754321 00 00001111234444554454 455566777776653211 222233222
Q ss_pred CCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCCH-HHHhhhcc
Q psy3261 282 GFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRVP-QKMYEFCS 340 (342)
Q Consensus 282 g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGNP-~~l~~lc~ 340 (342)
.|+. .+.|+..+.++-..++..+....-+..+.....+-..+.||- ++|..+|.
T Consensus 191 Rfdr-----~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 191 RFDR-----QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp SSCC-----EEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred ccce-----EEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2332 477888888999999988765332312222334555777765 89988873
No 57
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.00028 Score=60.12 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=29.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLVH 100 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~ 100 (342)
+...++|+|++|||||+++..+...+. ..|..|++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 467899999999999999999988876 67766555
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.12 E-value=0.0049 Score=65.55 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHhccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCCCCCeEEEEEeCCCCCCCC
Q psy3261 188 VDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSDWNNGAIVLALSPRANLPD 267 (342)
Q Consensus 188 ~~~l~~EL~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~ 267 (342)
+..+++++... ..|+++.||+++.+.+...... ...+...|+.++.. .+..+|+||+....
T Consensus 251 l~~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~g----------~~~~~~~L~~~l~~--~~i~~I~at~~~~~--- 311 (854)
T 1qvr_A 251 LKAVIQEVVQS----QGEVILFIDELHTVVGAGKAEG----------AVDAGNMLKPALAR--GELRLIGATTLDEY--- 311 (854)
T ss_dssp HHHHHHHHHTT----CSSEEEEECCC-----------------------------HHHHHT--TCCCEEEEECHHHH---
T ss_pred HHHHHHHHHhc----CCCeEEEEecHHHHhccCCccc----------hHHHHHHHHHHHhC--CCeEEEEecCchHH---
Confidence 45566677652 4689999999988876533110 12233445555532 12346777654210
Q ss_pred CccCcchhHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHH
Q psy3261 268 RRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYE 310 (342)
Q Consensus 268 ~~~~~~p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~ 310 (342)
+. ..+...+.. -|.++.|+.++.+|...+++.+.
T Consensus 312 ~~-~~~d~aL~r--------Rf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 RE-IEKDPALER--------RFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HH-HTTCTTTCS--------CCCCEEECCCCHHHHHHHHHHHH
T ss_pred hh-hccCHHHHh--------CCceEEeCCCCHHHHHHHHHhhh
Confidence 00 000011111 12348999999999999997544
No 59
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.0015 Score=54.67 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=30.6
Q ss_pred Eechh-HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 45 LIRNC-MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 45 lvR~~-t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
+-|+. ..++++.+.. .....++|+|++|||||+++.++......
T Consensus 25 ~g~~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQR-----RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCHHHHHHHHHHHTS-----SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhc-----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34553 3344444433 34567999999999999999888877655
No 60
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.98 E-value=0.015 Score=58.58 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=33.8
Q ss_pred eeecCCCCHHHHHHHHHHHHhCCCcc--CcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPELNDEEFHNLLNLYESKKWLQ--TSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~~s~~E~~~ll~yy~~~~~l~--~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+++|+.|+.+|+..++..+.-..-.. .++-..++.-.+||+|-.+.-+.
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g 337 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFF 337 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHH
Confidence 48999999999999998774322210 11123457779999999887554
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.0013 Score=55.22 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred Eechh-HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 45 LIRNC-MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 45 lvR~~-t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
+-|+. ..++++.+.. .....++|+|++|||||+++..+......
T Consensus 25 ~g~~~~~~~l~~~l~~-----~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 25 IGRDTEIRRAIQILSR-----RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCHHHHHHHHHHHTS-----SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhC-----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34553 3344444433 44667899999999999999888777655
No 62
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.87 E-value=0.0018 Score=55.98 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.8
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..++|+|++|||||+++..+...+..+|.-|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999999888888777766555443
No 63
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.0058 Score=64.61 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=55.2
Q ss_pred HHHHHHHHhccccCCCceEEEEEeCccccccCCCcCCCCCCCcccCCccchHHHHHHhhcCC-CCCeEEEEEeCCCCCCC
Q psy3261 188 VDVLFTEIKKLSTEGVCRTFVCVDGYNSFFAEKTNCKPEDKSKVLPSRVTLTRSVINLVQSD-WNNGAIVLALSPRANLP 266 (342)
Q Consensus 188 ~~~l~~EL~~~~~~~~~pVLvavD~~n~~~~~s~~y~~~~~~~I~~~~l~l~~~~~~~~~~~-~~~G~vv~AtS~~~~~~ 266 (342)
+..++++-+. ..|.+|.+|++-+++..-..-.... +...=.++..|+..+.|- -..+++|.|+|...
T Consensus 559 vr~lF~~Ar~-----~~P~IifiDEiDsl~~~R~~~~~~~----~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p--- 626 (806)
T 3cf2_A 559 VREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIGDG----GGAADRVINQILTEMDGMSTKKNVFIIGATNRP--- 626 (806)
T ss_dssp HHHHHHHHHT-----TCSEEEECSCGGGCC------------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS---
T ss_pred HHHHHHHHHH-----cCCceeechhhhHHhhccCCCCCCC----chHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc---
Confidence 3445555544 4689999999999986521010000 001114667777777653 34566666555432
Q ss_pred CCccCcchhHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHH-hhCCCHHHHhhhcc
Q psy3261 267 DRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAF-LTKRVPQKMYEFCS 340 (342)
Q Consensus 267 ~~~~~~~p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~-lSgGNP~~l~~lc~ 340 (342)
+ .+...+++.-.|+. .|.|+.-+.++=..+++.+....-+..+....+|-- .-|-.+.++..+|.
T Consensus 627 ~----~lD~AllRpgRfd~-----~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 627 D----IIDPAILRPGRLDQ-----LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp S----SSCHHHHSTTTSCC-----EEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred h----hCCHhHcCCCcceE-----EEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 1 13445665333543 356664455555566665554333321211222322 33456677777663
No 64
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.72 E-value=0.0018 Score=56.07 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=30.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe-CC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI-PW 103 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v-P~ 103 (342)
+.-++++|++|||||++|.+++..+...|.=|+.+ |.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 44688999999999999999999888887766555 44
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.69 E-value=0.048 Score=59.09 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=35.3
Q ss_pred eeecCC-CCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 291 PIHVPE-LNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 291 ~i~v~~-~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
.+.++. |+.+|+..++.-+....--..++...++--.++|.|-.+.-++
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHH
Confidence 378884 9999999999877643322133445678889999999887554
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.54 E-value=0.0018 Score=54.02 Aligned_cols=48 Identities=29% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
..+++..|+++ +...++|+|+.|||||+++.-+...+...|.-+++++
T Consensus 24 n~~~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 24 NAELVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp THHHHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred cHHHHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 33556666662 5778999999999999999999988877775555554
No 67
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.44 E-value=0.0026 Score=55.21 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=31.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+...++|+|+.||||||++..+.......|++++++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 45678999999999999999998887777899876663
No 68
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.30 E-value=0.0032 Score=56.44 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=32.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++.-++++|+.|+|||++|.|+++.+...|.-|+++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3567889999999999999999999999888777766
No 69
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.22 E-value=0.0072 Score=56.51 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~v 101 (342)
....++|+|++|||||.++..+...+. ..|.-|+++
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 367899999999999999988888887 777655554
No 70
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.15 E-value=0.0037 Score=51.44 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 49 CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 49 ~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
...++.+.++. +. .....++|+|++|||||++...+...+..
T Consensus 9 ~~~~~~~~~~~-~a--~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 9 WINQYRRRLQQ-LS--ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp HHHHHHHHHHH-HT--TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHH-Hh--CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34456666665 22 34567999999999999877666554433
No 71
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.00 E-value=0.0076 Score=50.64 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+...++|.|+.||||||++..+...- |++++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeC
Confidence 345689999999999999988876532 8877653
No 72
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0069 Score=53.41 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=31.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++.-++|.|++|||||+++.|++..+..+|.=|+|+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4577899999999999999999988877777666666
No 73
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.008 Score=51.19 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=30.3
Q ss_pred CCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 64 DRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 64 ~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..+...++|.|..||||||+...+..+....|+-|.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34567899999999999999999988877777544444
No 74
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.87 E-value=0.0061 Score=57.69 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=30.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC--CeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN--NYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~--gwiVl~vP 102 (342)
.+. ++.|+|++|||||++++|+++.+.++ |-.|+||.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 445 79999999999999999999988765 66677773
No 75
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.84 E-value=0.0065 Score=52.88 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=28.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++.-++|.|+.|||||+++.+++..+...+.=|+++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4667899999999999999999997665444334443
No 76
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.80 E-value=0.0069 Score=58.10 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+..-++|+|++|||||+++.|++..+...|--|+||
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4567889999999999999999999888777777777
No 77
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.0074 Score=53.26 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH-HHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY-AHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~-A~~~gwiVl~v 101 (342)
.++.-++|.|++|+|||+++.|++.. |...|+-|+|+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 46778999999999999999998765 55668878776
No 78
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.70 E-value=0.0088 Score=56.13 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCcccccc
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFA 109 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~~~~~~ 109 (342)
.++..+.|.|+.||||||+|.-+.-.. .|-|+.++|.-..+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~ 166 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWL 166 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCcccccc
Confidence 678899999999999999999888776 8999998876544433
No 79
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.67 E-value=0.011 Score=51.00 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.+...++|.|+.||||||++..+.... |++++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEc
Confidence 456789999999999999998876543 887765
No 80
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.66 E-value=0.011 Score=50.42 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++|+|..||||||+...+..+....|+-|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 478999999999999999998888889888755
No 81
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.66 E-value=0.012 Score=55.06 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.++.-++|.|++|+|||+++.|+...+..+|.-|+|+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46778999999999999999999988887887777763
No 82
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.65 E-value=0.0084 Score=49.52 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
-++|.|++||||||+...+ ...||.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEEEH
Confidence 5889999999999988877 5668877764
No 83
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.59 E-value=0.011 Score=53.33 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 49 CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 49 ~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++++.++..+ .....++|+|++|||||+++..+.......+.-+++|
T Consensus 14 ~~~~~~~~~~~~~---~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 14 SFLEVLEQVSHLA---PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp HHHHHHHHHHHHT---TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred HHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 3344555665522 2347899999999999977666655544444333444
No 84
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.59 E-value=0.011 Score=56.52 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|||||+++.|++..+...|--|+||.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46778999999999999999999998888887777774
No 85
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.58 E-value=0.01 Score=52.78 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 51 LELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 51 ~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+.+..|+.+....++.+.++++||+|||||++...++..
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554433445667999999999999987666554
No 86
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.50 E-value=0.011 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.++|.|.+||||||+...+.......|.-+.++|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 5899999999999999998887666676566664
No 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.48 E-value=0.32 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=29.8
Q ss_pred Eech-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 45 LIRN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 45 lvR~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
+-|+ ...+|.+.|.. . ....-+.|+|+.|+|||++..++.+.
T Consensus 131 VGRe~eLeeL~elL~~-~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 5676 44455556654 2 23567899999999999999888653
No 88
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.43 E-value=0.46 Score=48.19 Aligned_cols=68 Identities=24% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhC---CeEEEEe--CCccccccCCcceeccCCCCCccccHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHEN---NYLLVHI--PWVLRWFAYPKEVSHSLTKEGMVDLNIDAAMWLRHF 137 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~---gwiVl~v--P~~~~~~~~~~~~~~s~~~~~~~~qP~~a~~~L~~~ 137 (342)
...+++.|.+|||||++|..++...... +-+-+++ |....+..... .|.- -......|..+...|+.+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~--lPHl-~~~Vvtd~~~a~~~L~~l 286 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEG--IPHL-LCPVVTDMKEAANALRWS 286 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTT--CTTB-SSSCBCCHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcC--CCcc-cceeeCCHHHHHHHHHHH
Confidence 5789999999999999999987754432 3343443 44433322110 0110 112356688888888776
No 89
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.41 E-value=0.012 Score=53.36 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
...++|.|.+||||||+...+..+....||.++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 356899999999999999998888777899888663
No 90
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.41 E-value=0.013 Score=48.95 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=25.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..++|.|++||||||+...+... ..||.++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh--cCCcEEecH
Confidence 35889999999999998887662 568877764
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.36 E-value=0.015 Score=53.32 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=30.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~v 101 (342)
.++.-++|.|++|||||+++.++....... |+=|+++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 567889999999999999999999877654 8655555
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.36 E-value=0.012 Score=51.87 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.++.-+.|.|+.||||||++.++.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999986544
No 93
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.31 E-value=0.016 Score=49.00 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
++..++|+|..||||||++..+..+-...|+-++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 456789999999999999998888766678655555
No 94
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.30 E-value=0.019 Score=48.51 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
+..++|.|+.||||||+...+....-.+|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45799999999999999988887655554
No 95
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.29 E-value=0.016 Score=48.31 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=22.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
...++|+|+.||||||++..+.. ..|+.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~---~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ---QLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH---HTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHH---HhCCCEE
Confidence 35799999999999999877644 3455444
No 96
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.29 E-value=0.0091 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=26.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.++..++|.|+.||||||++..+... ...|.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEc
Confidence 34668999999999999999888664 344655443
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.28 E-value=0.015 Score=50.31 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+..-++|.|+.|||||+++.+++. ..|--|+|+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i 51 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYV 51 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEE
Confidence 5677899999999999999999988 445555555
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.27 E-value=0.011 Score=60.87 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.-.+|.||+|||||+++.+++.+...+|+=|+-+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3579999999999999999999999887765544
No 99
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.24 E-value=0.016 Score=49.06 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++|+|..||||||+...+.......|+-|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999888776778877765
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.23 E-value=0.033 Score=48.18 Aligned_cols=45 Identities=13% Similarity=-0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCe
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNY 96 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gw 96 (342)
..+|++.+.+ . ...+...+.|+|+.||||||++..+.......|.
T Consensus 7 ~~~l~~~~~~-~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 7 IDFLCKTILA-I-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp HHHHHHHHHT-S-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-h-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3446666654 2 2244567999999999999999988877655444
No 101
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.15 E-value=0.019 Score=51.47 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+..+++|.|++||||||+...+... .|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~---~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS---HCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH---hCCeEEec
Confidence 45678999999999999988887643 27777765
No 102
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.10 E-value=0.02 Score=52.92 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
++...++|+|++|||||++...+...+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999998766554443
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.06 E-value=0.025 Score=49.28 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=31.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++.-++++|+.|+|||++|.++++.+...|.-|+-+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3456789999999999999999999998887766655
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.04 E-value=0.039 Score=54.18 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=29.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCe--EEEEeCC
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNY--LLVHIPW 103 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gw--iVl~vP~ 103 (342)
.++|.|++|||||+++.+++.+....|. |++.-|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 8999999999999999999999988775 4444354
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.98 E-value=0.027 Score=51.80 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=27.1
Q ss_pred HHHHHHHhccCCC-CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 52 ELVGYLKSMTNFD-RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 52 el~~~l~~~~~~~-~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+|.++.... ++.+.++|+||+|||||++..-++.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3444555555544 5567899999999999998775544
No 106
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.96 E-value=0.022 Score=54.48 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|||||++..|++..+..+|--|+||.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46678999999999999999999998888877777774
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.96 E-value=0.013 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
++.|.|+.||||||+|.-+.-.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999998887664
No 108
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.96 E-value=0.02 Score=48.56 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|.+||||||+...+...- ||.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCeEecH
Confidence 34578999999999999988776532 7776664
No 109
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.88 E-value=0.02 Score=49.12 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
++.-+.|.|+.||||||++..+...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567899999999999999988765
No 110
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.86 E-value=0.029 Score=55.23 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=33.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.++.-++|.|++|+|||+++.|++..+..+|.=|+|+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 46778999999999999999999998888898888884
No 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.79 E-value=0.029 Score=48.82 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCCCCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 64 DRPSPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 64 ~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
..+...+.|.|+.||||||++..+...-...|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 35677889999999999999998887766434
No 112
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.79 E-value=0.025 Score=49.66 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..+.-++++|+-|||||+.|.|+++.+...|-=|+++
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~ 54 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 54 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 3466889999999999999999999999888777777
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.78 E-value=0.028 Score=49.40 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=24.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.+..-++|.|+.|||||+++.+++..+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4678899999999999999999988654
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.77 E-value=0.021 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
++.-++|.|+.||||||++..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3567899999999999999998775
No 115
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.75 E-value=0.033 Score=52.94 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=33.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.++.-++|.|++|+|||+++.|+...+..+|.-|+|+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46778999999999999999999998888998888873
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.71 E-value=0.029 Score=47.72 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=22.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
-++|.|+.||||||++..+.. ...|.+.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~ 33 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA--QLDNSAYIE 33 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HSSSEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhc--ccCCeEEEc
Confidence 478999999999999998854 344555544
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.71 E-value=0.017 Score=50.18 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
+...++|.|+.||||||++..+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999988754
No 118
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.70 E-value=0.033 Score=47.38 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|+|..|||||++...+.... .||.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l--~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL--DGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS--TTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc--CCCEEeeH
Confidence 45689999999999999887664421 58877764
No 119
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.68 E-value=0.029 Score=48.32 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|.|+.||||||+...+...- |+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeC
Confidence 4579999999999999888765542 7776654
No 120
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.60 E-value=0.025 Score=48.63 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=25.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCC
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPW 103 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~ 103 (342)
++.|+|+.||||||++..+.. .|+.+++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~----~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE----LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH----CCCEEEEccH
Confidence 689999999999999888765 3888887643
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.59 E-value=0.03 Score=48.22 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=24.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.+...++|.|++||||||+...+.... ||.++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~~i~ 55 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL---NVPFID 55 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 356789999999999999988776543 554443
No 122
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.59 E-value=0.031 Score=53.69 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|||||+++.|++..+..+|--|+||.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 45678999999999999999999998888777777774
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.57 E-value=0.031 Score=50.87 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=24.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.++.-++|.|+.|||||+++.|+...+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3577899999999999999999998554
No 124
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.57 E-value=0.036 Score=47.42 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=29.3
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
-..+.|.|..||||||++..++.+....|+=|-.|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 45788999999999999999999888888755444
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.54 E-value=0.03 Score=48.62 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.+..-+.|.|+.||||||++.++.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4677899999999999999999987544
No 126
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.51 E-value=0.033 Score=52.21 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC------CeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN------NYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~------gwiVl~v 101 (342)
.+..-++|+|++|||||+++.|++..+... |.-|+||
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi 147 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI 147 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE
Confidence 356789999999999999999999876544 5566666
No 127
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.50 E-value=0.024 Score=52.71 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 49 CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 49 ~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
...++.+.++..+ .....++|+|++|||||++...+.......+
T Consensus 10 ~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 53 (304)
T 1ojl_A 10 AMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHACSARSD 53 (304)
T ss_dssp HHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHHhCcccC
Confidence 3445666666622 3467899999999999987666655543333
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.48 E-value=0.044 Score=50.57 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
....-++|.|++||||||+...+.... ..+|++|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~-~~~~~~Is 65 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET-QGNVIVID 65 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT-TTCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEe
Confidence 345679999999999999988776532 24676664
No 129
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.48 E-value=0.027 Score=48.91 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=23.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+++|+|++||||||+...+... .|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~---~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK---YEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH---HCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCcEeeH
Confidence 6899999999999988877443 36666654
No 130
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.48 E-value=0.017 Score=47.39 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHH
Q psy3261 51 LELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 51 ~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~ 87 (342)
.++.+.++.++ .....++|+|++|||||++...+
T Consensus 14 ~~l~~~~~~~~---~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 14 QEMNREVEAAA---KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HHHHHHHHHHH---TCSSCEEEEEETTCCHHHHHGGG
T ss_pred HHHHHHHHHHh---CCCCcEEEECCCCccHHHHHHHH
Confidence 34555555422 23567999999999999765443
No 131
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.45 E-value=0.048 Score=52.11 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEeCCc
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHIPWV 104 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~vP~~ 104 (342)
+...++|.|+.||||||+|.-++.+.... +-.|+.+-+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 45589999999999999999988876643 6666666433
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.41 E-value=0.026 Score=48.24 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+.|+|+.||||||+...+... |+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----CCEEEcc
Confidence 4567899999999999998877653 8777754
No 133
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.41 E-value=0.042 Score=46.56 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|+.||||||+...+... .||.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~---l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK---YGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---hCCeEEcH
Confidence 4678999999999999988777543 37766554
No 134
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.38 E-value=0.037 Score=49.73 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
..++++.|+.|||||++..++.+.+.++|.=|+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 467999999999999999999999888886443
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.36 E-value=0.044 Score=47.83 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=25.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
++...++|.|.+||||||+...+..+ .|+.++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~---l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER---FHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH---cCceEEeh
Confidence 45678999999999999988777543 36665554
No 136
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.35 E-value=0.031 Score=51.18 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
+...++|+|++|||||++...+.......+
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 345799999999999998887777665443
No 137
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.35 E-value=0.033 Score=46.96 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
+..++|.|++||||||+...+... .|+.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~---l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE---LGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH---HTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH---hCCeEe
Confidence 457999999999999998877543 266544
No 138
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.03 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
++..++|.|+.||||||++..+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46689999999999999998887653
No 139
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.27 E-value=0.027 Score=48.93 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=23.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+++|+|++||||||+...+.. ..|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~---~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE---KYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH---HhCCcEEeH
Confidence 689999999999998877643 457777765
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.24 E-value=0.028 Score=46.56 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=22.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++|.|+.||||||+...+... .||.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~---l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE---LKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH---HCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeeecC
Confidence 5899999999999998876543 25544433
No 141
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.23 E-value=0.021 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCCeEEEEccCCCcHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVY 86 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q 86 (342)
++.-+.|.|+.||||||++..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999999997
No 142
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.17 E-value=0.026 Score=48.95 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.7
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
.++.|.|+.||||||++.-+..+...+|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 3688999999999999999998777778
No 143
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.14 E-value=0.022 Score=49.20 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=28.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
-++|.|+.||||||++..+..+....|+-|..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4789999999999999999888777787776553
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.13 E-value=0.049 Score=45.85 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|+|.+|||||++...+.... |+.++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS---GLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH---CCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh---CCeEEEH
Confidence 35679999999999999888765442 5555443
No 145
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.10 E-value=0.055 Score=46.55 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=27.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
++..++|+|..||||||+...+.......+.-|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 4678999999999999999998876555555443
No 146
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.09 E-value=0.029 Score=48.38 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=23.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+.|+|+.||||||+...+.. .|+.++.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~----lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD----LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT----TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCcccch
Confidence 578999999999999888754 58777654
No 147
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.09 E-value=0.044 Score=53.81 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=31.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl~v 101 (342)
.++.-++|.|++|+|||+++.|+...+.. +|.-|+|+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 36778999999999999999999987764 67766666
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.08 E-value=0.053 Score=49.38 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-h-CCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-E-NNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~-~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+..+-. . .|-|++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 5677899999999999999999887654 3 576654
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.049 Score=45.93 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|.|.+||||||+...+... .|+.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~---~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK---YGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH---hCCeEEeH
Confidence 356899999999999988776543 36766543
No 150
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.05 E-value=0.045 Score=55.62 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=32.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe-CCc
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI-PWV 104 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v-P~~ 104 (342)
...++|+|++|||||+++..++..+...|.-|+.+ |..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~ 242 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG 242 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcH
Confidence 56899999999999999999999988888766665 543
No 151
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.05 E-value=0.074 Score=50.46 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLL 98 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiV 98 (342)
....+++|.|.+|+|||+++.++.......|.=|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV 110 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCce
Confidence 4577899999999999999999988776655433
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.04 E-value=0.028 Score=48.57 Aligned_cols=26 Identities=12% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+...+.|+|+.||||||++..+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45667899999999999999887764
No 153
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.99 E-value=0.05 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
+...++|+|++|||||++...+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999965555443
No 154
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.93 E-value=0.047 Score=51.64 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=29.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh------CCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE------NNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~------~gwiVl~v 101 (342)
.+..-++|+|++|||||+++.|++..+.. .|--|+||
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi 162 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE
Confidence 35667899999999999999999988654 35556666
No 155
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.93 E-value=0.04 Score=47.99 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=23.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+++|.|++||||||....+...- |+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEeH
Confidence 68999999999999888776532 6666554
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.93 E-value=0.04 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.++.-++|.|+.||||||++..+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35677999999999999999888654
No 157
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.93 E-value=0.056 Score=46.27 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=27.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
-..++|.|+.|||||+++..++......|.-|-
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 467899999999999999999988666665443
No 158
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.91 E-value=0.046 Score=47.79 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|.+||||||....+..+- |+.++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~ 36 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY---GLAHLST 36 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CceEEeh
Confidence 45689999999999999877765542 6766654
No 159
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.88 E-value=0.056 Score=46.41 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
....++|.|.+||||||+...+..+ .|+.++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~---l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK---LGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH---HTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH---hCCcEEeh
Confidence 4568999999999999987777553 26665554
No 160
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.87 E-value=0.062 Score=48.28 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=24.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.....++|.|++||||||+...+.... ..+++++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l-~~~~~~~~ 64 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF-QGNIVIID 64 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT-TTCCEEEC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc-CCCcEEEe
Confidence 345689999999999999887776542 23455543
No 161
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.87 E-value=0.052 Score=45.76 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|.|+.||||||+...+... -||.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~---l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL---TKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH---HCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH---hCCCEEEC
Confidence 467999999999999988776543 36655543
No 162
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.86 E-value=0.072 Score=45.76 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
.++..++|+|..||||||+...+..+....+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3467899999999999999998887654444
No 163
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.85 E-value=0.046 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|++||||||+...+.. ..|+.++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~---~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT---HFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH---HSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH---HcCCeEEec
Confidence 356899999999999998877754 347776654
No 164
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.84 E-value=0.043 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.0
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.++|.|++||||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999998777643
No 165
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.84 E-value=0.049 Score=46.67 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=23.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
+..++|.|..||||||+...+.......|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 45789999999999999999887654444
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.84 E-value=0.034 Score=47.40 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=24.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAH-ENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~v 101 (342)
-++|.|+.||||||++..+...-. ..|..|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~ 36 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeecc
Confidence 478999999999999998887654 234444444
No 167
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.83 E-value=0.026 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
-.-++|+|+.||||||+|.++........|.|+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~ 37 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE 37 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence 4568999999999999999998765444555543
No 168
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.82 E-value=0.051 Score=47.20 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=27.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCC--eEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENN--YLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~g--wiVl 99 (342)
++..++|.|..||||||+...+..+-. ..| ++++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 466789999999999999998887665 567 4444
No 169
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.04 Score=46.39 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|+.|||||+++.++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999998765
No 170
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.80 E-value=0.06 Score=45.71 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|+|.+||||||+...+.... |+.++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---GFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---TCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcH
Confidence 5689999999999999887776542 5665544
No 171
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.77 E-value=0.097 Score=45.38 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN 94 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~ 94 (342)
.+..+++|.|..|||||+++.+++......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 356889999999999999999999876544
No 172
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.72 E-value=0.062 Score=49.89 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~vP 102 (342)
.+...++|.|+.|+||||++..+..+.. .+|.=|+.++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3567899999999999999999998877 4787666664
No 173
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.69 E-value=0.051 Score=53.98 Aligned_cols=37 Identities=5% Similarity=-0.190 Sum_probs=31.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEeC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHIP 102 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~vP 102 (342)
++.-++|.|++|+|||+++.|++..+..+ |+-|+|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 56679999999999999999999888765 88888773
No 174
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.67 E-value=0.042 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.++.-++|.||.||||||++..+...-
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999999887653
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.64 E-value=0.043 Score=47.62 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.++..+.|.|+.||||||++.-+.-.-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346788999999999999999887664
No 176
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.62 E-value=0.041 Score=48.45 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.++..+.|.|+.||||||++..+.-.- . |-+.+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~ 53 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF 53 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE
Confidence 457789999999999999999888754 3 66555
No 177
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.60 E-value=0.075 Score=52.41 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.8
Q ss_pred EEechh-HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 44 ILIRNC-MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 44 ~lvR~~-t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
++=|+. ...+++.|.. ...+.++|+|++|||||++...+......
T Consensus 182 iiGr~~~i~~l~~~l~r-----~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSR-----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CCCCHHHHHHHHHHHHC-----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHhc-----cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 444553 3345555544 34567899999999999987666555433
No 178
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.60 E-value=0.047 Score=47.17 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.+..-++|.|+.||||||+...+....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999988886653
No 179
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.59 E-value=0.06 Score=45.28 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=24.0
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|+|..||||||+...+... .||.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~---l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD---FGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH---hCCeEeeH
Confidence 357899999999999987776543 36766554
No 180
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.56 E-value=0.083 Score=46.94 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=31.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+..-++++|+-|+|||+.|.+.+..+...|.=|+-+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3456677999999999999999999999888766665
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.55 E-value=0.072 Score=44.19 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=22.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
..++|+|..|||||++...+... -|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~---lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA---LGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH---HTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHH---hCCcEEc
Confidence 36899999999999988776553 2565554
No 182
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.54 E-value=0.082 Score=49.70 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred ChhhHHhhhhcCCceEEechhHHHHHHHHHhccCC-------------CCCCCeEEEEccCCCcHHHHHHHHHHHHH---
Q psy3261 29 TRVFNEQTQIFNESSILIRNCMLELVGYLKSMTNF-------------DRPSPRFVLYGEHGVGKSMALVYALQYAH--- 92 (342)
Q Consensus 29 ~~~~~~~~~~~~~~~~lvR~~t~el~~~l~~~~~~-------------~~~~~r~vL~G~~GsGKS~~L~q~~~~A~--- 92 (342)
|..+.+.-+..+-|.+-....|-++++.|..+.+. .-.+..++|.|+.|+|||++...++....
T Consensus 93 peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv 172 (314)
T 1ko7_A 93 PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRGHRLV 172 (314)
T ss_dssp CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhcCCcee
Confidence 44555555555666666666777777766543211 01356899999999999999999988643
Q ss_pred hCCeEEEEeCCcccc
Q psy3261 93 ENNYLLVHIPWVLRW 107 (342)
Q Consensus 93 ~~gwiVl~vP~~~~~ 107 (342)
..+.+.+..-....+
T Consensus 173 ~dD~~~i~~~~~~~l 187 (314)
T 1ko7_A 173 ADDNVEIREISKDEL 187 (314)
T ss_dssp ESSEEEEEESSSSCE
T ss_pred cCCeEEEEEcCCCeE
Confidence 456666666444333
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.53 E-value=0.055 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+.|+|+.||||||++..+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999887754
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.53 E-value=0.071 Score=52.15 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=30.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl~v 101 (342)
.++.-++|.|++|+|||+++.|+...+.. +|.=|+|+
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 46778999999999999999999987765 57666666
No 185
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.51 E-value=0.027 Score=50.66 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=30.0
Q ss_pred eecCCCCHHHHHHHHHHHHhCCCccCcchHHHHHHhhCC-CHHHHhhhcc
Q psy3261 292 IHVPELNDEEFHNLLNLYESKKWLQTSEGREEIAFLTKR-VPQKMYEFCS 340 (342)
Q Consensus 292 i~v~~~s~~E~~~ll~yy~~~~~l~~e~~~~el~~lSgG-NP~~l~~lc~ 340 (342)
+.++..+.+|-..+++.+...--+..+.....+..++.| +|+++..+|.
T Consensus 178 i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 178 VLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp CBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred EEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 677778888889999887653222112212234445665 5678887763
No 186
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.49 E-value=0.052 Score=45.37 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=23.7
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.-++|+|..||||||+...+... ...+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~-l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV-LPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-SSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-cCCCeEEecc
Confidence 46899999999999987776543 2345665544
No 187
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.49 E-value=0.07 Score=46.38 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|+|..||||||++..+.. .|+.++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCCEEEEc
Confidence 45789999999999998887743 57766654
No 188
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.48 E-value=0.044 Score=46.85 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
++..++|.|..||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999998876643
No 189
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.38 E-value=0.049 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
+...++|.|+.||||||++..+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999887654
No 190
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.37 E-value=0.065 Score=45.14 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=23.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..++|+|.+|||||++...+.. ..||.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~---~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK---ALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH---HHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHH---HcCCCEEeC
Confidence 4699999999999998777654 336766654
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.34 E-value=0.07 Score=49.87 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|+.||||||++..+..+...+|.=|+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 345688999999999999999998877766544444
No 192
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.32 E-value=0.085 Score=45.17 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...++|+|..||||||+...+.. ..|+.++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~---~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK---DYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH---HSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH---HcCceEEeH
Confidence 35789999999999998777654 357777665
No 193
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.30 E-value=0.071 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
+..-+.|.|++|||||+++.|+...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 677899999999999999999876554
No 194
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.27 E-value=0.054 Score=50.80 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=29.9
Q ss_pred eecCCCCHHHHHHHHHHHHhC-CCccCcchHHHHHHhhCCCHHHHhhhc
Q psy3261 292 IHVPELNDEEFHNLLNLYESK-KWLQTSEGREEIAFLTKRVPQKMYEFC 339 (342)
Q Consensus 292 i~v~~~s~~E~~~ll~yy~~~-~~l~~e~~~~el~~lSgGNP~~l~~lc 339 (342)
+.++.++.+|...++...... ++-..++...++.-.|.|+||.+.++|
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 566677888888877666432 322244444555567788888776665
No 195
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.23 E-value=0.082 Score=46.48 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=23.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.++|.|++||||||+...+..+. |+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEch
Confidence 58999999999999888776543 6665554
No 196
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.20 E-value=0.047 Score=49.29 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=25.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCc
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWV 104 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~ 104 (342)
-++|.|+.||||||+...+.. .-|+.++.....
T Consensus 3 li~I~G~~GSGKSTla~~La~---~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ---ETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH---HHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHh---cCCCeEEeccHH
Confidence 478999999999998877743 447777776543
No 197
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.18 E-value=0.099 Score=48.75 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
+...+.|.|+.||||||++.-+..+....+-=|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 4568889999999999999999988775544333
No 198
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.15 E-value=0.18 Score=44.47 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
-.+++..+.+ +..+++.|+.|||||+++...+..
T Consensus 66 q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 66 ESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 3455566655 567999999999999988777654
No 199
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.13 E-value=0.073 Score=49.50 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
+..-++|+|++|||||+++.|+...+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678999999999999999998865
No 200
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=0.066 Score=46.91 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
+..-++|.||.|||||+++..++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 5678899999999999999988754
No 201
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.11 E-value=0.057 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=19.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
..+||.||.|+|||+++..++.-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999887654
No 202
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.10 E-value=0.094 Score=49.75 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+...++|+|++|||||++...+...
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999776655443
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.03 E-value=0.067 Score=52.53 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+++.|+.||||||++..+..+...+|.=|+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356788999999999999999999998888777665
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.02 E-value=0.088 Score=45.49 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
....++|.|..|+|||+++.+++.....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999887543
No 205
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.01 E-value=0.04 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=16.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH-HH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL-QY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~-~~ 90 (342)
++.-+.|.|+.||||||++..+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999998887 54
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.00 E-value=0.077 Score=52.23 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+++.|+.|+||||+++.+..+..++|.=|+-|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356889999999999999999999999888877666
No 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.97 E-value=0.064 Score=45.61 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=23.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.++|.|..||||||+...+..+. |+.++..|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l---~~~~~~e~ 32 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL---GYEIFKEP 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---CCEEECCC
T ss_pred EEEEECCCccCHHHHHHHHHHhc---CCcEEccc
Confidence 58999999999999988876543 45544433
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.92 E-value=0.089 Score=49.64 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+...+.|.|+.||||||++.-+..+....+.=|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 3567889999999999999999998877665544433
No 209
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.87 E-value=0.064 Score=47.99 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.++..+.|.|+.||||||+|.-+.-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46778999999999999998876543
No 210
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.85 E-value=0.083 Score=50.15 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.+..-+.|.|++|||||+++.|+...+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567889999999999999999998763
No 211
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.85 E-value=0.07 Score=44.10 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=22.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
+++|+|..||||||+...+... .|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~---l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS---LNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH---HTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHH---hCCCEEE
Confidence 5899999999999988777653 2555554
No 212
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.84 E-value=0.087 Score=45.47 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH---hCCeEEEEeC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH---ENNYLLVHIP 102 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~---~~gwiVl~vP 102 (342)
....++|.|+.|+|||++...++.... ..+++++..-
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQE 54 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEe
Confidence 356899999999999999999888543 3455555543
No 213
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.82 E-value=0.055 Score=44.00 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...++++.|+.|+|||+++.++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999998874
No 214
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.82 E-value=0.093 Score=48.85 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLL 98 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiV 98 (342)
++..+.|.|+.||||||++.-+..+....+.=|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 456788999999999999999998877554333
No 215
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.82 E-value=0.058 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|+.|+|||+++.++..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999998875
No 216
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.76 E-value=0.068 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..++++.|..|+|||+++.++..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999988774
No 217
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.75 E-value=0.064 Score=43.37 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred CeEEEEccCCCcHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.++++.|+.|+|||+++.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998874
No 218
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.74 E-value=0.11 Score=49.72 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+...+|.|+.|+|||+++..++......|--|+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 466789999999999999999998777665555445
No 219
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.72 E-value=0.047 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+..+++|.|+.|+|||+++.++.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999998865
No 220
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.058 Score=43.97 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..++++.|..|+|||+++.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998764
No 221
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.68 E-value=0.071 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYL 97 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwi 97 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4677899999999999999987765432 33544
No 222
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.67 E-value=0.1 Score=46.44 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.+...++|.|+.||||||++..+..+-.. |.-|+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 35678999999999999999998887665 654443
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.67 E-value=0.089 Score=46.23 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=25.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYL 97 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwi 97 (342)
+..+.|.|+.||||||+|.-+.-..-..|-|
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcCCee
Confidence 6789999999999999999988772356665
No 224
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.67 E-value=0.082 Score=46.16 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=20.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
....++|.|++||||||+...+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999988777553
No 225
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.66 E-value=0.081 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999988753
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.64 E-value=0.1 Score=49.45 Aligned_cols=30 Identities=30% Similarity=0.270 Sum_probs=25.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN 94 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~ 94 (342)
.....+.|.|++|+||||++..++.+....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 346789999999999999999999876554
No 227
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.63 E-value=0.13 Score=50.17 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=27.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl 99 (342)
.+..-++|.|+.||||||+|.-++.+-.. .|-|++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~ 200 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT 200 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 45667899999999999999998887643 455554
No 228
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.61 E-value=0.081 Score=50.63 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=24.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCe
Q psy3261 52 ELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNY 96 (342)
Q Consensus 52 el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gw 96 (342)
+|=+.|++-.....+..|++|-|..||||||++.|.- .-+..||
T Consensus 18 ~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~-i~~~~~~ 61 (362)
T 1zcb_A 18 MIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMR-IIHGQDF 61 (362)
T ss_dssp -------------CCCEEEEEECSTTSSHHHHHHHHH-HHHSCCC
T ss_pred HHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHH-HHhCCCC
Confidence 3334454412223557899999999999999999983 2234444
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.58 E-value=0.092 Score=50.30 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh--CCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE--NNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~--~gwiVl 99 (342)
.+...++|.|+.||||||+|.-+..+-.. .|-|++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 45667999999999999999999887653 566643
No 230
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.58 E-value=0.068 Score=45.56 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
..+++|.|+.|||||+++..+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 368899999999999999988753
No 231
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.57 E-value=0.076 Score=42.80 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.7
Q ss_pred CeEEEEccCCCcHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.++++.|..|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988864
No 232
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.55 E-value=0.066 Score=43.93 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
+..+++|.|+.|+|||+++.++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHh
Confidence 45689999999999999998775
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.53 E-value=0.11 Score=48.87 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+.+.|+.|+||||++..+..+....|.=|+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 455788999999999999999998777666655544
No 234
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.52 E-value=0.093 Score=60.40 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|||||++..|+++-|..+|+-|++|.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 46788999999999999999999999999999998884
No 235
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.52 E-value=0.083 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++.+++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999998863
No 236
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.52 E-value=0.069 Score=43.20 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|+.|+|||+++.++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999988775
No 237
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.51 E-value=0.085 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
...+++|.|..|+|||+++.+++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999998875
No 238
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.50 E-value=0.07 Score=45.39 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|+.|||||+++..+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46899999999999999998765
No 239
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.50 E-value=0.1 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=25.2
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
..++|.|.+||||||+...+... ..||.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~--~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh--CCCcEEeccc
Confidence 35899999999999988777651 2488877553
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.48 E-value=0.073 Score=47.21 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3577889999999999999986654322 2354443
No 241
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.42 E-value=0.082 Score=42.95 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..++++.|+.|+|||+++.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.41 E-value=0.11 Score=51.93 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.++..++|.|+.|||||+++.++......+|--|+|
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~ 314 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAIL 314 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 467889999999999999999999877666653333
No 243
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.38 E-value=0.071 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|+.|+|||+++..+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999988753
No 244
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.36 E-value=0.11 Score=48.27 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...++|+|++|||||+++..+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45899999999999988776544
No 245
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.36 E-value=0.086 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..++++.|..|+|||+++.++..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467999999999999999998854
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.34 E-value=0.064 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+++|.|+.|||||+++..++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998764
No 247
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.33 E-value=0.084 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|+.|+|||+++.++..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999988764
No 248
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.31 E-value=0.1 Score=43.21 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+..+++|.|+.|+|||+++.++.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999997654
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.29 E-value=0.047 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
...++|+|++|||||+++..+...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 345999999999999887765553
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.27 E-value=0.083 Score=44.39 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.++..+.|.|+.||||||++.-+.-.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456688999999999999999887653
No 251
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.24 E-value=0.24 Score=46.57 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=20.9
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
..-+-|.|+.||||||++..+...-.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999987766544
No 252
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.23 E-value=0.089 Score=42.90 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...++++.|..|+|||+++.++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999988764
No 253
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.23 E-value=0.071 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=15.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...++|+|..||||||+...+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998877643
No 254
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.23 E-value=0.2 Score=50.04 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=27.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl 99 (342)
+...+.|.|+.||||||++.-+..+.... |-|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 45678899999999999999998877654 55554
No 255
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.22 E-value=0.12 Score=46.46 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+.-++++|+-|+|||+.|.+.++.+...|.=|+-+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~ 53 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 53 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 467889999999999999999999999888766665
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.21 E-value=1.8 Score=40.13 Aligned_cols=90 Identities=2% Similarity=0.019 Sum_probs=52.5
Q ss_pred hHHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHH-hCCCcc
Q psy3261 238 LTRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYE-SKKWLQ 316 (342)
Q Consensus 238 l~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~-~~~~l~ 316 (342)
....|++++.....+..+|.+++.-.....++. ++..+ ...+ ..+++..++.+|+...+.... +.|+--
T Consensus 93 ~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k--~~~~i-~sr~-------~~~~~~~l~~~~l~~~l~~~~~~~g~~i 162 (343)
T 1jr3_D 93 INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAA--WFTAL-ANRS-------VQVTCQTPEQAQLPRWVAARAKQLNLEL 162 (343)
T ss_dssp HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSH--HHHHH-TTTC-------EEEEECCCCTTHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhH--HHHHH-HhCc-------eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 456788888765566677777654321111111 22112 1222 137788889999988885544 444322
Q ss_pred CcchHHHHHHhhCCCHHHHhh
Q psy3261 317 TSEGREEIAFLTKRVPQKMYE 337 (342)
Q Consensus 317 ~e~~~~el~~lSgGNP~~l~~ 337 (342)
+++....+-..+|||.+.+..
T Consensus 163 ~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 163 DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CHHHHHHHHHSSTTCHHHHHH
T ss_pred CHHHHHHHHHHhchHHHHHHH
Confidence 454455566689999987665
No 257
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.20 E-value=0.17 Score=49.08 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhC--CeEEEEe
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHEN--NYLLVHI 101 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~--gwiVl~v 101 (342)
.+.+|+.+-. -.++.|+.|.|++|||||+++.++..++.++ +..++++
T Consensus 161 GiraID~~~p----i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 161 TARVLDLASP----IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp HHHHHHHHSC----CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cceeeeeeee----ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 4445554432 2468899999999999999999998887653 4444443
No 258
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.19 E-value=0.065 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
...+++.|+.|+||||+.+.+..++.++|+=|+.|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357899999999999999999999988888777773
No 259
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.18 E-value=0.09 Score=43.26 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|+.|+|||+++..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999998864
No 260
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.17 E-value=0.1 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
....+++|.|+.|+|||+++.++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999987653
No 261
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.16 E-value=0.092 Score=43.21 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+..+++|.|..|+|||+++..+..-
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44679999999999999999888754
No 262
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.15 E-value=0.094 Score=47.13 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLL 98 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiV 98 (342)
.+...+.|+|+.||||||++..+.. .-|+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~---~Lg~~~ 55 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE---SLNWRL 55 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH---HTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH---hcCCCc
Confidence 3467899999999999999887653 335543
No 263
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.14 E-value=0.086 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=19.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
..+++|.|+.|+|||+++..+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999885
No 264
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.14 E-value=0.086 Score=45.41 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=24.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+.|+|+.||||||++..+.... .++.++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~--~~~~~i~~ 53 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQ 53 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS--TTEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc--CCcEEEeC
Confidence 45678899999999999887765421 15655554
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.10 E-value=0.09 Score=47.83 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4677899999999999999987654432 2354443
No 266
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.10 E-value=0.14 Score=45.17 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
++.-++|.|..||||||....+..+-...|+-|+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 356789999999999999999999988888766543
No 267
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.09 E-value=0.095 Score=42.64 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
..+++|.|..|+|||+++..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999998764
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.08 E-value=0.085 Score=46.65 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 3577899999999999999987654432 2355543
No 269
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.04 E-value=0.097 Score=42.60 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..++++.|+.|+|||+++..+..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999998764
No 270
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.04 E-value=0.089 Score=42.82 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..++++.|+.|+|||+++..+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998874
No 271
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.01 E-value=0.14 Score=46.97 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=24.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...+.|+|..||||||+...+.. .|+-++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~----lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN----LGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH----HTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCcEEeh
Confidence 34689999999999999887763 37777665
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.01 E-value=0.079 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|+.|+|||+++.++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998863
No 273
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.00 E-value=0.12 Score=52.74 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLVH 100 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl~ 100 (342)
....+|.|++|||||+++..++.+... .++-|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 346899999999999999999988765 4544433
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.00 E-value=0.084 Score=47.37 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=26.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4677899999999999999988765433 3566655
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.98 E-value=0.091 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.++..+.|.|+.||||||+|.-+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45778999999999999999877554
No 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.98 E-value=0.1 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.++..+.|.|+.||||||+|.-+.-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999887764
No 277
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.97 E-value=0.25 Score=45.71 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH---hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH---ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~---~~gwiVl 99 (342)
.+...+.|.|+.||||||++..+..... ..|-+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4456788999999999999998877543 3455544
No 278
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.95 E-value=0.089 Score=45.13 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 64 DRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 64 ~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
..+..+++|.|..|+|||+++..+..-
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999999887743
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.94 E-value=0.094 Score=46.65 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 3577899999999999999987765433 3466643
No 280
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.93 E-value=0.061 Score=48.53 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
-.++++.+.. ...+..+++|.|..|+|||+++..+..
T Consensus 22 l~~~~~~~~~---~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 22 LIEFFGKLKQ---KDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHH---TTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHhh---ccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3355555544 234578999999999999999988874
No 281
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.93 E-value=0.088 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|+.|+|||+++.++..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3457999999999999999998864
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.91 E-value=0.098 Score=47.53 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-...|-|.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i 78 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKI 78 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence 46779999999999999999987654323455443
No 283
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.90 E-value=0.095 Score=46.71 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+...+-|+|+.||||||++..+...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999887664
No 284
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.88 E-value=0.087 Score=44.72 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+..+++|.|..|+|||+++..+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45679999999999999999988653
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.87 E-value=0.096 Score=46.94 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3577899999999999999987765432 2354443
No 286
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.87 E-value=0.078 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++..+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 287
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.85 E-value=0.19 Score=44.29 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
....++|.|.+||||||+...+... .|+.++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~---l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN---FCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH---HTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH---hCCceecH
Confidence 3468999999999999987776554 25555543
No 288
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.81 E-value=0.12 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 64 DRPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 64 ~~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
..+..+++|.|+.|+|||+++.++.
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3456799999999999999999875
No 289
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.81 E-value=0.11 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.+ ..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 45 7888999999999999998765433 3455544
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.80 E-value=0.1 Score=47.76 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4678899999999999999987765432 3354443
No 291
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.80 E-value=0.11 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|||||+++..++.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999988775
No 292
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.80 E-value=0.1 Score=42.62 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.8
Q ss_pred CeEEEEccCCCcHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+++|.|..|+|||+++..+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998875
No 293
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.79 E-value=0.15 Score=48.85 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl 99 (342)
+...+.|.|+.||||||++.-+..+.... |-|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 45678899999999999999999887754 44443
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.79 E-value=0.17 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHhc-cCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 52 ELVGYLKSM-TNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 52 el~~~l~~~-~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
.|.+.+.++ .....+...+.|.|+.||||||+...+......
T Consensus 15 ~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 15 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 344444442 112344567889999999999998887776554
No 295
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.78 E-value=0.1 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|+.|+|||+++..++.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998863
No 296
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.75 E-value=0.077 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+..+++|.|..|+|||+++..+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 446799999999999999998875
No 297
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.74 E-value=0.12 Score=43.08 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+..+++|.|+.|+|||+++..++.-
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 35679999999999999999988763
No 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.73 E-value=0.11 Score=46.92 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH---HHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY---AHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~---A~~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-. --..|-|.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 35778999999999999999987764 123455544
No 299
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.72 E-value=0.1 Score=47.29 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4677899999999999999997765432 3355544
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.71 E-value=0.11 Score=47.51 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=25.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 4678899999999999999987665432 2354443
No 301
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.69 E-value=0.1 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.++..+.|.|+.||||||+|.-+.-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45778999999999999999877654
No 302
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.67 E-value=0.1 Score=47.16 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-.-.|-|.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~ 58 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence 46778999999999999999977654321154443
No 303
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.66 E-value=0.14 Score=49.54 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=32.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe-CCccc
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI-PWVLR 106 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v-P~~~~ 106 (342)
....+++.|+.|||||+++..++..+...|.-|+-+ |.+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 467899999999999999999998888776555445 66544
No 304
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.65 E-value=0.11 Score=42.07 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|..|+|||+++..+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988765
No 305
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.64 E-value=0.11 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999998865
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.63 E-value=0.11 Score=47.34 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 4677899999999999999987654432 2355443
No 307
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.62 E-value=0.11 Score=43.16 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999998873
No 308
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.59 E-value=0.11 Score=42.12 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..++++.|..|+|||+++..+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998874
No 309
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.57 E-value=0.15 Score=46.08 Aligned_cols=40 Identities=35% Similarity=0.470 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 47 RNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 47 R~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
++...++++.+.. ...+..++++.|..|+|||+++..+..
T Consensus 22 ~~~l~~~~~~~~~---~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 22 QTKLLELLGNLKQ---EDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHHH---TTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh---cCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3334455555544 234568999999999999999998774
No 310
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.56 E-value=0.12 Score=41.95 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+++|.|..|+|||+++.++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999998865
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.55 E-value=0.1 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
-.+|+|+.|||||++|. ++.++.
T Consensus 28 ~~~i~G~NGsGKStll~-ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD-AILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHH-HHHHHT
T ss_pred cEEEECCCCCCHHHHHH-HHHHHH
Confidence 78999999999998875 455543
No 312
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.55 E-value=0.21 Score=51.99 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=29.0
Q ss_pred ech-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 46 IRN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 46 vR~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
-|+ ...++++.|.. .....++|+|++|||||+++..+....
T Consensus 190 Gr~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 190 GREKELERAIQVLCR-----RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCHHHHHHHHHHHTS-----SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-----cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 355 33445555544 356789999999999999887777655
No 313
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.53 E-value=0.13 Score=42.38 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..++++.|..|+|||+++..+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999987764
No 314
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.53 E-value=0.2 Score=45.97 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccC----CCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 50 MLELVGYLKSMTN----FDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 50 t~el~~~l~~~~~----~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+++++.|++... ......++++.|..|+|||+++..++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 3 LIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4566777765221 1235679999999999999999998754
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.52 E-value=0.09 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
..-++|+|++|||||++..|+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445799999999999999998664
No 316
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.50 E-value=0.11 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred CeEEEEccCCCcHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+++|.|..|+|||+++.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998763
No 317
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.49 E-value=0.11 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
-++|+|+.|+|||++| .++.||.
T Consensus 25 ~~~i~G~NGaGKTTll-~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF-EAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Confidence 6789999999999888 6777764
No 318
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.49 E-value=0.19 Score=48.37 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+...++|.|++||||||++..+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5677999999999999999987775
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.45 E-value=0.12 Score=42.82 Aligned_cols=29 Identities=24% Similarity=0.109 Sum_probs=21.0
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.-++|+|..||||||+...+... .||-++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~---lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA---LKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH---HTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHH---hCCCEE
Confidence 35889999999999987766442 355444
No 320
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.44 E-value=0.11 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 4678899999999999999987765432 3455544
No 321
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.44 E-value=0.12 Score=42.96 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999988764
No 322
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.43 E-value=0.17 Score=43.83 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 70 FVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 70 ~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+++-|..||||||....+..+-.++|.=|+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 57889999999999999999999888766554
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.41 E-value=0.12 Score=46.93 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4677899999999999999987754432 2355443
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.40 E-value=0.18 Score=47.60 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN 94 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~ 94 (342)
.+...+.|.|++||||||+|..+..+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 567899999999999999999999876643
No 325
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.40 E-value=0.16 Score=49.55 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAH-ENNYLL 98 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiV 98 (342)
...+.|.|+.|+||||+|.-+.-.-. ..|-|.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 44888999999999999998875322 345443
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.39 E-value=0.11 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3467899999999999999998764
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.38 E-value=0.1 Score=44.44 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=24.6
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNY 96 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gw 96 (342)
..+.|.|+.||||||++.-++-+....|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~ 31 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGL 31 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCC
Confidence 36789999999999999999888776654
No 328
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.34 E-value=0.13 Score=42.52 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999988864
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.32 E-value=0.12 Score=49.38 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=26.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 4577889999999999999987765443 3465544
No 330
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.31 E-value=0.11 Score=42.81 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4467999999999999999988764
No 331
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.29 E-value=0.18 Score=52.55 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=28.0
Q ss_pred EEech-hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 44 ILIRN-CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 44 ~lvR~-~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
++-|+ ....++..|.. ...+.++|+|++|||||++...+...
T Consensus 182 iiG~~~~i~~l~~~l~~-----~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSR-----RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCHHHHHHHHHHHHC-----SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhC-----CCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34455 34445555544 44567999999999999976555444
No 332
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.28 E-value=0.12 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=19.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+...+.|+|+.||||||+...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999998876655
No 333
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.26 E-value=0.17 Score=44.97 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+...+++.|+.|+||||++.++..+.. .|.=|+-|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 3456788899999999999999998776 66444333
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.24 E-value=0.21 Score=43.24 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...+.|+|..||||||+...+... .|+-|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~---lg~~vid~ 43 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK---YGAHVVNV 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh---cCCEEEEC
Confidence 457889999999999998877654 26666553
No 335
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.21 E-value=0.12 Score=46.72 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYL 97 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwi 97 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3577899999999999999987765432 33555
No 336
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.17 E-value=0.24 Score=46.63 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=27.7
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCcc
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVL 105 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~~ 105 (342)
..++|.|+.|||||++...+ |...|+.++.+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~L---a~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL---ADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH---HHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHH---HHHcCCcEEeccchh
Confidence 47899999999999986655 456789998886543
No 337
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.14 E-value=0.24 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|.+|+|||+++..++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 3567999999999999999998864
No 338
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.13 E-value=0.15 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++.++..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567999999999999999998875
No 339
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.13 E-value=0.13 Score=42.57 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++..+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 457999999999999999988774
No 340
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.13 E-value=0.14 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.3
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.-.+|+|+.|+|||++|- ++.||.
T Consensus 24 ~~~~I~G~NgsGKStil~-ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD-AILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH-HHHHHh
Confidence 467899999999999874 556655
No 341
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.12 E-value=0.11 Score=43.57 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 457999999999999999988863
No 342
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.11 E-value=0.17 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=19.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~ 87 (342)
.+...++|+|++|||||+++..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHH
Confidence 56778999999999999877655
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.11 E-value=0.13 Score=46.61 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
...++|+|+.||||||++..+... -||-++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~---lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS---LGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH---HTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh---cCCcEEe
Confidence 568999999999999998776543 3665444
No 344
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.10 E-value=0.15 Score=47.26 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
...+++.|+.|+||||++..+..+....|.=|+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45678899999999999999998887777655555
No 345
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.08 E-value=0.12 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++.++..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999988764
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.07 E-value=0.14 Score=49.03 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 4577899999999999999987765433 3466654
No 347
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.06 E-value=0.14 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999998763
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.03 E-value=0.11 Score=45.81 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.++.-+.|.|+.||||||++..+..+ .|-+++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~ 49 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICL 49 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEE
Confidence 45667899999999999999887766 553443
No 349
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.02 E-value=0.1 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+..+++|.|+.|||||+++..+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 457789999999999999997654
No 350
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.01 E-value=0.14 Score=49.42 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 4577899999999999999987765443 3466654
No 351
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.00 E-value=0.13 Score=47.30 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 4677899999999999999987765432 3455544
No 352
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.98 E-value=0.14 Score=43.29 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999988775
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.91 E-value=0.14 Score=48.93 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 4577889999999999999987765433 3466655
No 354
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.91 E-value=0.14 Score=42.74 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..++++.|..|+|||+++.++..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 355
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.91 E-value=0.13 Score=47.97 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEeCCCCCCCCCccCcchhHHhhhcCCCCCCCcceeecCCCCHHHHHHHHHHHH
Q psy3261 239 TRSVINLVQSDWNNGAIVLALSPRANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLNLYE 310 (342)
Q Consensus 239 ~~~~~~~~~~~~~~G~vv~AtS~~~~~~~~~~~~~p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll~yy~ 310 (342)
...|++++.....+..+|++|+... . ++..+..+ .++++.++.+|+...+....
T Consensus 99 ~naLLk~LEep~~~t~fIl~t~~~~------k--l~~tI~SR----------~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 99 ANAFLKALEEPPEYAVIVLNTRRWH------Y--LLPTIKSR----------VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTHHHHHSCCTTEEEEEEESCGG------G--SCHHHHTT----------SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECChH------h--ChHHHHce----------eEeCCCCCHHHHHHHHHHHh
Confidence 4667788776667777777775421 1 22222222 27788888888888876554
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.88 E-value=0.13 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|+.|+|||+++.++..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998775
No 357
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.87 E-value=0.28 Score=46.05 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=28.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCcc
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVL 105 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~~ 105 (342)
+....++|.||.|||||++...+ |...+..|+...+.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~L---a~~~~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIEL---RKILPVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHH---HHHSCEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHH---HHhCCCcEEeccccc
Confidence 33457889999999999997666 455688888875543
No 358
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.86 E-value=0.12 Score=45.69 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
....+++|.|+.|+|||+++..++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHc
Confidence 356799999999999999998876
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.85 E-value=0.15 Score=49.06 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 4577899999999999999987765433 3466655
No 360
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.83 E-value=0.12 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=26.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 4567899999999999999998765433 3466655
No 361
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.83 E-value=0.14 Score=42.42 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
+..+++|.|..|+|||+++..++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999887
No 362
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.79 E-value=0.13 Score=43.11 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3457999999999999999998764
No 363
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.79 E-value=0.16 Score=44.88 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPW 103 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~ 103 (342)
+..++|.|..||||||+...+..+. +++.++..|-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l--~~~~~~~Ep~ 36 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY--PEWHVATEPV 36 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC--TTSEEECCCG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc--CCCeeeecch
Confidence 3568999999999999988876653 3566655553
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.78 E-value=0.14 Score=48.81 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 3577899999999999999997765433 3466654
No 365
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.78 E-value=0.14 Score=43.57 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|+.|+|||+++..+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999988764
No 366
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.76 E-value=0.15 Score=47.29 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYL 97 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwi 97 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 4677899999999999999987765432 34554
No 367
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.75 E-value=0.18 Score=44.55 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
.+...+.|+|+.|||||++...+.. ..|+.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~---~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK---DFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH---HHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH---HcCCceec
Confidence 5667899999999999998876654 23654443
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.74 E-value=0.15 Score=42.79 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 357899999999999999988765
No 369
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.74 E-value=0.21 Score=50.97 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHh----CC-eEEEEeCCc
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHE----NN-YLLVHIPWV 104 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~----~g-wiVl~vP~~ 104 (342)
..-++|+|++|||||+++..++..... .+ -+++--|..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg 206 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh
Confidence 567999999999999999999887663 34 344545754
No 370
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.71 E-value=0.2 Score=50.16 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|.|..||||||++..+..++.+.|.=|+-|
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 345788999999999999999999988877755544
No 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.12 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCC-e-EEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENN-Y-LLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~g-w-iVl~v 101 (342)
.++.++.|.|+.||||||+|.-+.-++. ..| - |.+.-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 4688999999999999999999999886 446 3 55543
No 372
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.68 E-value=0.22 Score=46.09 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=28.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+.+.|+.|+||||++..+..+....|.=|+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 455788889999999999999998777665544444
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.67 E-value=0.14 Score=48.79 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLVH 100 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~ 100 (342)
+...++|.|+.||||||+|.-+..+-. ..|-|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 467899999999999999998877543 34555443
No 374
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.66 E-value=0.13 Score=43.31 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
++..+++|.|..|+|||+++.++..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999998864
No 375
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.66 E-value=0.18 Score=47.86 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.++-++.|.|+.||||||+|..+.-...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999998888864
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.65 E-value=0.13 Score=48.88 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
..++.|.|+.||||||++..+.-.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887763
No 377
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.64 E-value=0.13 Score=42.89 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=20.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3567999999999999999998864
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.64 E-value=0.17 Score=41.79 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.3
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.-.+|+|+.|||||++|- ++.||.
T Consensus 24 g~~~I~G~NGsGKStil~-Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLD-AILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 467899999999999854 666665
No 379
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.62 E-value=0.2 Score=56.89 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|||||+++.|++..+..+|--|+||.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 36778999999999999999999999998888888884
No 380
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.62 E-value=0.16 Score=43.45 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
.+..+++|.|..|+|||+++.++..-
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999988764
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.61 E-value=0.13 Score=42.97 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..++++.|..|+|||+++.++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999988763
No 382
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.58 E-value=0.18 Score=42.22 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~ 87 (342)
++..++++.|..|+|||+++.++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999876
No 383
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.58 E-value=0.35 Score=42.54 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNY 96 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gw 96 (342)
+.-+++.|..||||||....+..+-...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 456889999999999999999999888886
No 384
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.57 E-value=0.14 Score=42.36 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.+.+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999998765
No 385
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.56 E-value=0.43 Score=50.13 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHH-hC--Ce-EEEEeCC
Q psy3261 49 CMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAH-EN--NY-LLVHIPW 103 (342)
Q Consensus 49 ~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~--gw-iVl~vP~ 103 (342)
...+|...++. +..++|.|+.|||||+++.+++.... .. |- +++-.|.
T Consensus 98 q~~~i~~~l~~-------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 98 QRDEFLKLYQN-------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp GHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred HHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 34455666655 55799999999999998888755433 12 44 4444575
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.56 E-value=0.16 Score=49.15 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-...|-|.+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i 79 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEE
Confidence 46789999999999999999877654334455544
No 387
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.55 E-value=0.15 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
...+++|.|..|+|||+++..+..-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4579999999999999999988754
No 388
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.53 E-value=0.2 Score=52.94 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.8
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEE
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHE-NNYLLV 99 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl 99 (342)
.-.+|.|++|||||+++..++.+..+ .+.-|+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~il 404 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVL 404 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 46899999999999999999988775 444443
No 389
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.52 E-value=0.15 Score=43.02 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999988774
No 390
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.51 E-value=0.16 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++..+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 356899999999999999988764
No 391
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.51 E-value=0.16 Score=48.83 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=26.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 3577889999999999999988765433 3466654
No 392
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.46 E-value=0.14 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
....++|.|++|+|||++...++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999998887654
No 393
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.41 E-value=0.99 Score=38.14 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=17.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++.++.|||||.+....+.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~ 60 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIA 60 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHH
Confidence 35699999999999987544443
No 394
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.40 E-value=0.17 Score=42.73 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++..+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhc
Confidence 457999999999999999988864
No 395
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.35 E-value=0.17 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.+..+++|.|+.|+|||+++.++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999764
No 396
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.35 E-value=0.15 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.+++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 4567999999999999999998774
No 397
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.33 E-value=0.13 Score=49.60 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+...++|.|.-||||||++..+..+....|+++..-|
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEP 84 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 84 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CCEEEECCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCC
Confidence 34567899999999999999999988888884444445
No 398
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.30 E-value=0.15 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.+.|.|+.||||||++.-+.-.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999887653
No 399
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.29 E-value=0.18 Score=42.14 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
+..+++|.|..|+|||+++..+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357999999999999999988864
No 400
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.28 E-value=0.41 Score=44.96 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENN 95 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~g 95 (342)
.+...+.|.|+.|+||||++..+.......|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~ 84 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREG 84 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 5678899999999999999999988776544
No 401
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.26 E-value=0.76 Score=39.55 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHH
Q psy3261 47 RNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALV 85 (342)
Q Consensus 47 R~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~ 85 (342)
|.-=.+.+..+.+ +..+++.++.|||||.+..
T Consensus 38 ~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~ 69 (224)
T 1qde_A 38 SAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFS 69 (224)
T ss_dssp CHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHH
Confidence 4433345555544 3459999999999998733
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.26 E-value=0.24 Score=48.45 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~v 101 (342)
...+++.|+.|+||||+...+.++...+ |.=|+-|
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4577888999999999999999988887 8777766
No 403
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.25 E-value=0.17 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|..|+|||+++.++..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988764
No 404
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.20 E-value=0.56 Score=41.16 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.6
Q ss_pred CeEEEEccCCCcHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVY 86 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q 86 (342)
..+++.++.|||||.+..-
T Consensus 67 ~~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHH
Confidence 4589999999999987433
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.20 E-value=0.14 Score=43.00 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++.++..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567999999999999999988753
No 406
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.19 E-value=0.44 Score=49.08 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=41.7
Q ss_pred CCChhhHHhhhhcCCceEEechhHHHHHHH-HHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEEEe-CC
Q psy3261 27 GITRVFNEQTQIFNESSILIRNCMLELVGY-LKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLVHI-PW 103 (342)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~lvR~~t~el~~~-l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl~v-P~ 103 (342)
++|+.+.+.++.++- .-.+..=.+++.. +.+ +..+++.|+.|||||+...+.+..+.. +|--++++ |.
T Consensus 14 ~l~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 14 KLPSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE-------GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp SSCHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred CCCHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC-------CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 466666555544321 1234433344443 222 578999999999999999888865543 55555555 85
Q ss_pred c
Q psy3261 104 V 104 (342)
Q Consensus 104 ~ 104 (342)
-
T Consensus 85 r 85 (715)
T 2va8_A 85 R 85 (715)
T ss_dssp H
T ss_pred H
Confidence 4
No 407
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.18 E-value=0.17 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|+.|+|||+++..+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999988764
No 408
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.18 E-value=0.52 Score=41.79 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred EechhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCC
Q psy3261 45 LIRNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPW 103 (342)
Q Consensus 45 lvR~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~ 103 (342)
-.|+.=.+.+..+.+ ..+.+|.|+.|+|||.+...++... .+.+++-+|.
T Consensus 93 ~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~--~~~~liv~P~ 142 (237)
T 2fz4_A 93 SLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPT 142 (237)
T ss_dssp CCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHS--CSCEEEEESS
T ss_pred CcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEeCC
Confidence 445544455554433 2459999999999999876665543 3444444443
No 409
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.17 E-value=0.23 Score=50.68 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhc-cCCCCCCCeEEEEccCCCcHHHHHHHHHHH
Q psy3261 49 CMLELVGYLKSM-TNFDRPSPRFVLYGEHGVGKSMALVYALQY 90 (342)
Q Consensus 49 ~t~el~~~l~~~-~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~ 90 (342)
+.+++++.+... .+.+-.-+.+.|.|+.||||||+|.-++-.
T Consensus 26 ~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 26 PCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 456677777652 112234467999999999999999988764
No 410
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.15 E-value=0.17 Score=47.32 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=23.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.++..+.|.|+.||||||++..+...-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4566788999999999999988776654
No 411
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.14 E-value=0.2 Score=50.45 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
.+...++|+|++|||||+++..+....
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 367789999999999998887665544
No 412
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=90.12 E-value=0.13 Score=48.63 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=25.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
...++|-|.-||||||++..+..+....|+++..-|
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEP 39 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CCEEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCC
Confidence 356889999999999999999988888884444444
No 413
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.11 E-value=0.17 Score=42.93 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=20.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
+..+++|.|.+|+|||+++.+.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998866
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.07 E-value=0.23 Score=57.18 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=33.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+..-++|+|++|+|||+++.|++..+..+|.-|+||.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 36778999999999999999999999998887788874
No 415
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=90.05 E-value=0.27 Score=49.79 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN 94 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~ 94 (342)
....++|.|++|||||++|.+-+.|..++
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ri~~l~~~ 49 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVHRIAWLMSV 49 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35668999999999999999999988765
No 416
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.05 E-value=0.18 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|..|+|||+++..+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988753
No 417
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.04 E-value=0.15 Score=45.63 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.2
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|.+|+|||+++..+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 4568999999999999999988763
No 418
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.02 E-value=0.48 Score=46.04 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHHh--CCeEEEEe
Q psy3261 48 NCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHE--NNYLLVHI 101 (342)
Q Consensus 48 ~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~--~gwiVl~v 101 (342)
+..+.+|+.|-- -.++-|..|.|++|+|||+++.++...+.. .+..+|++
T Consensus 160 ~tGiraID~l~P----igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~ 211 (427)
T 3l0o_A 160 IYSTRLIDLFAP----IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIIL 211 (427)
T ss_dssp CHHHHHHHHHSC----CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hccchhhhhccc----ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEE
Confidence 355566666633 246889999999999999999888877654 36555554
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.98 E-value=0.19 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999988764
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.96 E-value=0.33 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYL 97 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwi 97 (342)
++.-++|.|..||||||.+..+..+-...|.-
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999988877754
No 421
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.95 E-value=0.18 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++.+++.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3457999999999999999998864
No 422
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.90 E-value=0.19 Score=43.79 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++..++.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999988753
No 423
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.90 E-value=0.49 Score=40.18 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.1
Q ss_pred EechhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 45 LIRNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 45 lvR~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
-.|+-=.+.+..+.+ ...++|.++.|+|||.+...++....
T Consensus 33 ~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 33 QLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355544555665544 35799999999999998877776543
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.89 E-value=0.17 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++.++..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3567999999999999999998775
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.88 E-value=0.2 Score=42.16 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 3467999999999999999988764
No 426
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.83 E-value=0.22 Score=44.63 Aligned_cols=31 Identities=19% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVH 100 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~ 100 (342)
...+.|+|+.||||||+...+... .|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~---lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA---LGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH---HTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH---hCCCccc
Confidence 467999999999999988766433 3555443
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.82 E-value=0.26 Score=56.03 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
.+..-++|+|++|+|||+++.|++..+..+|.-|+||
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 3567899999999999999999999998888777777
No 428
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.81 E-value=0.13 Score=48.99 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 4577899999999999999987765433 3466654
No 429
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.78 E-value=0.29 Score=43.51 Aligned_cols=34 Identities=21% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
.+.=.+++|+-|||||+.|.+.+..+...|--|+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvl 60 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVV 60 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 3566789999999999988888887776654443
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.75 E-value=0.18 Score=44.95 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3567999999999999999998864
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.73 E-value=0.19 Score=42.69 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 3567999999999999999998874
No 432
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.73 E-value=0.32 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.-++++|.|+.|||||++|..++.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Confidence 345999999999999999999886
No 433
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.72 E-value=0.27 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..++|+|++|||||.+...+.......+.-+++|
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 3699999999999988777766665444333333
No 434
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.71 E-value=0.2 Score=41.78 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++ +.+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~-~~l~ 35 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNL-KWIY 35 (198)
T ss_dssp EEEEEEEECSTTSSHHHHH-HHHH
T ss_pred cccEEEEECCCCCCHHHHH-HHHH
Confidence 4579999999999999998 5444
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.68 E-value=0.17 Score=47.29 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=25.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-... ..|-|.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i 113 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEE
Confidence 5688999999999999999976654322 3455443
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.64 E-value=0.24 Score=48.57 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH 92 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~ 92 (342)
.++.++.|.|+.||||||+|..+.-+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5688999999999999999988887754
No 437
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.64 E-value=0.32 Score=48.19 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEEEe
Q psy3261 52 ELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLVHI 101 (342)
Q Consensus 52 el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl~v 101 (342)
..|+.|..+ .++.+.+|.|++|+|||+++.+++.... ..+-+.+++
T Consensus 140 r~ID~L~pi----~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 140 KVVDLLAPY----IKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp HHHHHHSCE----ETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred hHHHHHhhh----ccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 356666441 2466899999999999999999988644 455555554
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.63 E-value=0.41 Score=45.72 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 50 MLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 50 t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
+-++++.++. .-.......++|.|+.|||||++...+.
T Consensus 8 ~~~il~~l~~-~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDN-RIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHH-TTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 3445666654 2222334569999999999999886543
No 439
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.63 E-value=0.16 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
...++|+|++|||||++...+...+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 4689999999999998776665543
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.60 E-value=0.19 Score=42.45 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4577999999999999999988764
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.50 E-value=0.23 Score=43.50 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 69 RFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
+++|.|++||||+|....+. ...|+..|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La---~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA---KEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH---HHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---HHHCCeEE
Confidence 57899999999998655554 34465443
No 442
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.49 E-value=0.17 Score=50.71 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl 99 (342)
+...++|.|+.||||||+|.-++.+-.. .|-+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 3455999999999999999887765432 344333
No 443
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.46 E-value=0.39 Score=42.41 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
++.-+++.|..||||||....+..+-.. ...++..|
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~~ep 39 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLLKFP 39 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEEEec
Confidence 4678999999999999999988887654 33444444
No 444
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.43 E-value=0.22 Score=43.48 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=15.9
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~ 87 (342)
-++++|++|||||+.....
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 5789999999999986553
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.39 E-value=0.22 Score=42.78 Aligned_cols=24 Identities=33% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 357999999999999999998765
No 446
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.39 E-value=0.23 Score=42.06 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.7
Q ss_pred CCCCeEEEEccCCCcHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~ 87 (342)
.+..+++|.|..|+|||+++..+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999998743
No 447
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.38 E-value=0.21 Score=45.50 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=24.6
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEE
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLV 99 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl 99 (342)
+..+.|.|+.||||||+|.-+.-.--..|-|.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEE
Confidence 678999999999999999887654322355543
No 448
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=89.35 E-value=0.21 Score=48.57 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCeEEEEccCCCcHHHH-HHHHHHHHHhCCeEEEEe-CC
Q psy3261 67 SPRFVLYGEHGVGKSMA-LVYALQYAHENNYLLVHI-PW 103 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~-L~q~~~~A~~~gwiVl~v-P~ 103 (342)
+..+++.|+.|||||.+ +..++..+..+|.-++++ |.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 45789999999999998 577776777777555554 64
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.28 E-value=0.27 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
.++..+.|.|+.||||||++.+++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999999964
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.26 E-value=0.21 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|..|+|||+++.++..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998753
No 451
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.24 E-value=0.22 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 357899999999999999987753
No 452
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.22 E-value=0.31 Score=47.60 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...+++.|+.||||||++..+..+....|.=|+-+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 455688889999999999999999888777666554
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.20 E-value=0.17 Score=42.53 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567999999999999999988754
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.19 E-value=0.37 Score=41.57 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=22.7
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..+.|+|+.|||||++...+. ...|+-++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~---~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA---SELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH---HHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHH---HhcCCceecC
Confidence 468999999999999877653 3346655443
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.10 E-value=0.21 Score=48.45 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
..-++|.|.+||||||+..++. ...||.+|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~---~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL---VSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT---GGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHH---HhcCcEEEcc
Confidence 4578899999999999887754 3447776643
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.09 E-value=0.21 Score=43.11 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++..+..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3467999999999999999988763
No 457
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.05 E-value=0.44 Score=44.83 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCc
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWV 104 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~ 104 (342)
..-++|.||.|||||++...+ |...+..||...+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~L---a~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML---AKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH---HHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHH---HHhCccceeecCcc
Confidence 346889999999999997666 45567777776554
No 458
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.01 E-value=0.28 Score=43.72 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC----CeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN----NYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~----gwiVl 99 (342)
.++.-++|.|+.||||||....+..+-... |.-|+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 356789999999999999999998887665 65443
No 459
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.99 E-value=0.22 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCcHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
..+++|.|++|||||+++..+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 460
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.98 E-value=0.26 Score=48.73 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=43.0
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhC----CeEEEEeCCccccccCCcceeccCCCCCccccHHHHHHHHHHHHHh
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHEN----NYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNIDAAMWLRHFQKQ 140 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~----gwiVl~vP~~~~~~~~~~~~~~s~~~~~~~~qP~~a~~~L~~~~~~ 140 (342)
.++-|..|.|.+|+|||+++.|+..++..| |.++||+--+++ +....++++.|...
T Consensus 150 grGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER--------------------~~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 150 VRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT--------------------NEEAQYFMSDFEKT 209 (469)
T ss_dssp BTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC--------------------HHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC--------------------cHHHHHHHHHHHhc
Confidence 468899999999999999999999988754 467777743322 23667788888754
Q ss_pred C
Q psy3261 141 N 141 (342)
Q Consensus 141 N 141 (342)
.
T Consensus 210 g 210 (469)
T 2c61_A 210 G 210 (469)
T ss_dssp S
T ss_pred c
Confidence 3
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.25 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 356899999999999999988765
No 462
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.92 E-value=0.25 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
..+++|.|..|+|||+++..+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999987764
No 463
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.88 E-value=0.17 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
....+++|.|..|+|||+++..++.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3568999999999999999988753
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.87 E-value=0.24 Score=42.09 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.2
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy3261 69 RFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 69 r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+.|+|+.|||||++...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999998877654
No 465
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.80 E-value=0.13 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=11.4
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999988764
No 466
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.80 E-value=0.27 Score=47.15 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
.++..+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 4677899999999999999877665433 3455544
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.76 E-value=0.12 Score=46.46 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.6
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeC
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIP 102 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP 102 (342)
.+...++|.|..||||||+...+..+. .++.++..|
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l--~~~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC--EDWEVVPEP 57 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC--TTEEEECCC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc--CCCEEEecc
Confidence 345789999999999999988776553 256666554
No 468
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.75 E-value=0.16 Score=47.74 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
+...+.|.|+.||||||+|.-+..+-. ..|-|.+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 356899999999999999887776533 3344433
No 469
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=88.68 E-value=0.89 Score=40.71 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.0
Q ss_pred CeEEEEccCCCcHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~ 87 (342)
..+++.++.|||||.+..-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHH
Confidence 46899999999999874433
No 470
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.29 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHh
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHE 93 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~ 93 (342)
....+|.|++|||||+++.+++.+...
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999987654
No 471
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.66 E-value=0.25 Score=44.56 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred CeEEEEccCCCcHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~ 88 (342)
++++|.|.+|||||+++..+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999874
No 472
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.60 E-value=0.29 Score=51.85 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~v 101 (342)
+...++|+|++|||||++...+.......+.-+++|
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 345899999999999987766666555434333333
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.57 E-value=0.21 Score=42.58 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=19.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYA 87 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~ 87 (342)
...+++|.|..|+|||+++.++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHT
T ss_pred cEEEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999876
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.55 E-value=0.28 Score=42.41 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.+++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3467999999999999999998875
No 475
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.53 E-value=0.27 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.030 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
....+.|.|+.||||||+|..+.-... ..|-|.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 356788999999999999998875443 3355554
No 476
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.52 E-value=0.26 Score=43.05 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=20.0
Q ss_pred CCCeEEEEccCCCcHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
...+++|.|.+|+|||+++.+.+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998765
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.52 E-value=0.28 Score=41.14 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999988774
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.46 E-value=0.28 Score=41.81 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.+..+++|.|..|+|||+++.++..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999988763
No 479
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.39 E-value=0.31 Score=43.14 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLL 98 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiV 98 (342)
+..-++|.|++||||+|....+.. ..|+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~---~~g~~h 57 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ---KFHFNH 57 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH---HHCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH---HHCCce
Confidence 445567899999999996655543 335543
No 480
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.33 E-value=1.1 Score=40.93 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=19.3
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
..+++.++.|||||.+....+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 679999999999999876655443
No 481
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.30 E-value=0.25 Score=44.02 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=28.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh-CCeEEEE
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE-NNYLLVH 100 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-~gwiVl~ 100 (342)
.++.-+++.|..||||||....+..+-.. .|.-|+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45778999999999999999999888776 6654433
No 482
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.28 E-value=0.29 Score=41.68 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++.++..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 357899999999999999998754
No 483
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.28 E-value=0.3 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=24.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH-hCCeEEE
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH-ENNYLLV 99 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~gwiVl 99 (342)
....+.|.|+.|+||||++..+. ... ..|-|-+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 35678999999999999999988 433 3465555
No 484
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.27 E-value=1.4 Score=40.87 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 47 RNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 47 R~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
|..=.+.+..+-+ .....+++.++.|+|||.+....+...
T Consensus 29 ~~~Q~~~i~~~~~-----~~~~~~lv~a~TGsGKT~~~~~~~~~~ 68 (395)
T 3pey_A 29 SKIQERALPLLLH-----NPPRNMIAQSQSGTGKTAAFSLTMLTR 68 (395)
T ss_dssp CHHHHHHHHHHHC-----SSCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3333345555544 234789999999999998766655544
No 485
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.14 E-value=0.3 Score=46.63 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYA 91 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A 91 (342)
++..+.|.|+.|+||||++..+.-..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 35689999999999999998887543
No 486
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.10 E-value=2.1 Score=37.18 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.4
Q ss_pred CCeEEEEccCCCcHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVY 86 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q 86 (342)
+..+++.++.|||||.+...
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 45699999999999997444
No 487
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.08 E-value=0.31 Score=47.94 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=47.5
Q ss_pred EEEEeCccccccCCCcCCCCCCCcccCCccc---hHHHHHHhhcCC----------CCCeEEEEEeCCCCCCCCCccCcc
Q psy3261 207 FVCVDGYNSFFAEKTNCKPEDKSKVLPSRVT---LTRSVINLVQSD----------WNNGAIVLALSPRANLPDRRESHL 273 (342)
Q Consensus 207 LvavD~~n~~~~~s~~y~~~~~~~I~~~~l~---l~~~~~~~~~~~----------~~~G~vv~AtS~~~~~~~~~~~~~ 273 (342)
++.+|++-.+...+.. ...+.+ +=+.|++++.+. -.+-.+|+|..-.. .++.. .+
T Consensus 253 il~~DEidki~~~~~~---------~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~--~~~~d-li 320 (444)
T 1g41_A 253 IVFIDEIDKICKKGEY---------SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV--ARPSD-LI 320 (444)
T ss_dssp EEEEETGGGGSCCSSC---------SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS--CCGGG-SC
T ss_pred eeeHHHHHHHhhccCC---------CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc--CChhh-cc
Confidence 4459999777654321 122332 446888888763 35556666643221 12222 23
Q ss_pred hhHHhhhcCCCCCCCcceeecCCCCHHHHHHHH
Q psy3261 274 PLYMLKKAGFESIDPFVPIHVPELNDEEFHNLL 306 (342)
Q Consensus 274 p~~llg~~g~~~~dP~~~i~v~~~s~~E~~~ll 306 (342)
| ++.|+ |+. .++++.|+.+|+..++
T Consensus 321 p-el~~R--~~i-----~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 321 P-ELQGR--LPI-----RVELTALSAADFERIL 345 (444)
T ss_dssp H-HHHTT--CCE-----EEECCCCCHHHHHHHH
T ss_pred h-HHhcc--cce-----eeeCCCCCHHHHHHHH
Confidence 4 56666 321 3688999999999988
No 488
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=88.02 E-value=0.2 Score=47.57 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCCeEEEEccCCCcHHHHH-HHHHHHHHhCCeEEEEeCCccc
Q psy3261 66 PSPRFVLYGEHGVGKSMAL-VYALQYAHENNYLLVHIPWVLR 106 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L-~q~~~~A~~~gwiVl~vP~~~~ 106 (342)
+...++|.|.-||||||++ ..+..+....|- |++++++-.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~-vv~trEPgg 51 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAITPNR-ILLIGEPLS 51 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTSGGG-EEEECCCHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc-EEEEeCCCc
Confidence 4578899999999999999 777777666663 666666544
No 489
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.98 E-value=0.31 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
.-+++|-|..|+|||+++.+.+.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHh
Confidence 35899999999999999998764
No 490
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.98 E-value=0.33 Score=45.54 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHH---hCCeEEEEe
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAH---ENNYLLVHI 101 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~---~~gwiVl~v 101 (342)
.+..++|.|+.|+|||++....+.... ..+++.+..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYR 184 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 356899999999999999988876443 335555554
No 491
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.96 E-value=1.8 Score=39.15 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHhccCCCCCCCeEEEEccCCCcHHHHHHHHH
Q psy3261 47 RNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 47 R~~t~el~~~l~~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
|..=.+++..+.+ ...+++.++.|+|||.+....+
T Consensus 18 ~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~ 52 (337)
T 2z0m_A 18 TEVQSKTIPLMLQ-------GKNVVVRAKTGSGKTAAYAIPI 52 (337)
T ss_dssp CHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-------CCCEEEEcCCCCcHHHHHHHHH
Confidence 3333345555544 3579999999999998755443
No 492
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.94 E-value=1.7 Score=36.74 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCeEEEEccCCCcHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYAL 88 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~ 88 (342)
+..+++.++.|+|||.+..-.+
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHHHH
Confidence 3569999999999997655433
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.89 E-value=0.24 Score=45.62 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=24.3
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhC--CeEEEEeCCc
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHEN--NYLLVHIPWV 104 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~--gwiVl~vP~~ 104 (342)
+...+.|+|+.||||||+...+....... ...|++...-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 35568999999999999998887743322 2456654433
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.82 E-value=0.54 Score=44.55 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCcc
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVL 105 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~~ 105 (342)
+..-++|.|+.|||||++...+ |..-|+-||...+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~L---A~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDL---AAHFPLEVINSDKMQ 75 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH---HTTSCEEEEECCSST
T ss_pred CCceEEEECCCCCCHHHHHHHH---HHHCCCcEEcccccc
Confidence 3457999999999999987655 566788888876653
No 495
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.69 E-value=0.36 Score=47.62 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh-----------CCeEEEEeCCccccccCCcceeccCCCCCccccHHHHHHH
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE-----------NNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNIDAAMW 133 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~-----------~gwiVl~vP~~~~~~~~~~~~~~s~~~~~~~~qP~~a~~~ 133 (342)
.+.-|..|.|.+|+|||+++.++..++.. .++++||+--+++ +....++
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR--------------------~~Ev~e~ 204 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGIT--------------------QRELSYF 204 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEEC--------------------HHHHHHH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCc--------------------hHHHHHH
Confidence 46789999999999999999999888764 3567777743322 2366777
Q ss_pred HHHHHHh
Q psy3261 134 LRHFQKQ 140 (342)
Q Consensus 134 L~~~~~~ 140 (342)
++.|...
T Consensus 205 ~~~l~~~ 211 (464)
T 3gqb_B 205 IQEFERT 211 (464)
T ss_dssp HHHHHHT
T ss_pred HHHhhhc
Confidence 8887664
No 496
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.54 E-value=0.35 Score=41.87 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCcHHHHHHHHHH
Q psy3261 66 PSPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 66 ~~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...+++|.|..|+|||+++..+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 346899999999999999988764
No 497
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.53 E-value=0.45 Score=49.13 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=28.4
Q ss_pred CeEEEEccCCCcHHHHHHHHHHHHHhCCeEEEEeCCcc
Q psy3261 68 PRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVL 105 (342)
Q Consensus 68 ~r~vL~G~~GsGKS~~L~q~~~~A~~~gwiVl~vP~~~ 105 (342)
..++|+|.||.|||+++--+++.+..+. +|.-|...
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~~~--~vtAP~~~ 228 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAGRA--IVTAPAKA 228 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSSCE--EEECSSCC
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCc--EEECCCHH
Confidence 4689999999999999999999887654 44455443
No 498
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.53 E-value=0.29 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCcHHHHHHHHHH
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQ 89 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~ 89 (342)
...++|.|+.|+|||++|..+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45779999999999999999653
No 499
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.51 E-value=0.47 Score=48.86 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCeEEEEccCCCcHHHHHHHHHHHHHhC-CeEEEEeCCc
Q psy3261 67 SPRFVLYGEHGVGKSMALVYALQYAHEN-NYLLVHIPWV 104 (342)
Q Consensus 67 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~-gwiVl~vP~~ 104 (342)
+..+++.||.|||||++..+.+..+..+ +-+|+-.|.-
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r 78 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLR 78 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcH
Confidence 5679999999999999998888766554 4444444854
No 500
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.49 E-value=0.35 Score=47.74 Aligned_cols=57 Identities=9% Similarity=0.206 Sum_probs=42.5
Q ss_pred CCCCeEEEEccCCCcHHHHHHHHHHHHHh----CCeEEEEeCCccccccCCcceeccCCCCCccccHHHHHHHHHHHHHh
Q psy3261 65 RPSPRFVLYGEHGVGKSMALVYALQYAHE----NNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNIDAAMWLRHFQKQ 140 (342)
Q Consensus 65 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~----~gwiVl~vP~~~~~~~~~~~~~~s~~~~~~~~qP~~a~~~L~~~~~~ 140 (342)
.+.-|..|.|.+|+|||+++.++..++.. .++++||+--+++ +....++++.|...
T Consensus 149 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR--------------------~~Ev~e~~~~~~~~ 208 (465)
T 3vr4_D 149 VRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT--------------------FEEAEFFMEDFRQT 208 (465)
T ss_dssp BTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC--------------------HHHHHHHHHHHHHH
T ss_pred ccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC--------------------cHHHHHHHHHHhhc
Confidence 46889999999999999999998888865 3567777744422 23667778888664
Q ss_pred C
Q psy3261 141 N 141 (342)
Q Consensus 141 N 141 (342)
.
T Consensus 209 g 209 (465)
T 3vr4_D 209 G 209 (465)
T ss_dssp T
T ss_pred C
Confidence 3
Done!