RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3261
(342 letters)
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.9 bits (68), Expect = 0.16
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 52 ELVGYLKS-MTNFDRPSPRFVLYGEHGVGKS-MALVYALQYAHENNYLLVHIPWVLRWFA 109
+L L + + N PR L G G GK+ Y + V+I +
Sbjct: 27 QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 86
Query: 110 Y 110
Sbjct: 87 T 87
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.8 bits (65), Expect = 0.39
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 52 ELVGYLKSMTNFDRPSPRFVLYGEHGVGK-SMALVYALQYAHENNYLLVHIPWVLRWFAY 110
EL +LKS+++ R P +LYG +G GK + + Y L +
Sbjct: 18 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 77
Query: 111 PKEVSHSLTKEGMVDLN-IDAAMWLRHFQKQNTKW 144
K + ++ +++ D R ++ K
Sbjct: 78 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 112
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 28.1 bits (62), Expect = 0.78
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 266 PDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLN 307
P RES Y + A + I + +N + + LN
Sbjct: 83 PKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLN 124
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.6 bits (62), Expect = 1.0
Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 1/123 (0%)
Query: 61 TNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTK 120
T + ++ G++G GKS +L+ A+ + I ++ L
Sbjct: 17 TVVEFKEGINLIIGQNGSGKS-SLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIF 75
Query: 121 EGMVDLNIDAAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITR 180
E +L+ + ++ + + A + +
Sbjct: 76 EKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNA 135
Query: 181 VKY 183
+
Sbjct: 136 IYI 138
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.4 bits (62), Expect = 1.3
Identities = 12/133 (9%), Positives = 36/133 (27%), Gaps = 7/133 (5%)
Query: 46 IRNCMLELVGYLKSMTNFDRPSPRFVL-YGEHGVGKSMALVYALQYAHENNYLLVHIPWV 104
+ + + ++ N DR VL G GK+ L + ++ + P
Sbjct: 18 VTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTA-LAAKIAEESNFPFIKICSPDK 76
Query: 105 LRWFAYPKEVSHSLTKEGMVDLNIDAAMWLRHFQK-----QNTKWLEDPRLTTSQEYVWS 159
+ F+ + + + + + ++ + L +
Sbjct: 77 MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 136
Query: 160 PREKSEANIPLAA 172
+ + +
Sbjct: 137 APPQGRKLLIIGT 149
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/112 (16%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Query: 71 VLYGEHGVGKSM-ALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNID 129
L G GKSM AL A Q A + L V P E + + L
Sbjct: 33 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH 92
Query: 130 AAMWLRHFQKQNTKWLEDPRLTTSQEYVWSPREKSEANIPLAALIEHGITRV 181
+ R + A ++ + R
Sbjct: 93 LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRF 144
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 1.7
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 52 ELVGYLKSMTNFDRPSPRFV-LYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAY 110
+ K + + G GKS + + + L + R +
Sbjct: 13 DFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 72
Query: 111 PKEVSHSLTKEGMVDLNIDAAMWLRHFQKQNTKW 144
K+ L KE + ++ Q
Sbjct: 73 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 106
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 27.3 bits (60), Expect = 1.8
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 262 RANLPDRRESHLPLYMLKKAGFESIDPFVPIHVPELNDEEFHNLLN 307
P R++ Y + A +D I + +N ++ + ++
Sbjct: 78 EKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIH 123
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 27.7 bits (61), Expect = 2.3
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 71 VLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNIDA 130
+L GE GVGK+ + + V + ++ G + A
Sbjct: 43 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GTKYRGDFEKRFKA 101
Query: 131 AMWLRHFQKQNTKWLEDP 148
+ + ++++
Sbjct: 102 LLKQLEQDTNSILFIDEI 119
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 26.7 bits (59), Expect = 3.7
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 46 IRNCMLELVGYLKSMTNFD----RPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHI 101
+ + E+V +LK+ + F R +L G GVGK+ L A+ A E +
Sbjct: 17 AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH-LARAV--AGEARVPFITA 73
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.2 bits (56), Expect = 4.9
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 64 DRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSH 116
+ P+ + V+ G+ GVGKS + Q +Y L+ + +
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI 53
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 5.5
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 71 VLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVLRWFAYPKEVSHSLTKEGMVDLNIDA 130
++ G G GK++ +++Q+ + N + P V F E + + D
Sbjct: 30 LVSGTSGTGKTL---FSIQFLY-NGIIEFDEPGVFVTF----EETPQDIIKNARSFGWDL 81
Query: 131 AMWLRHFQKQNTKWLEDP 148
A + + DP
Sbjct: 82 AKLVDEGKLFILDASPDP 99
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.3 bits (56), Expect = 6.0
Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 5/102 (4%)
Query: 46 IRNCMLELVGYLKSMTNFDRPSPRFVLYGEHGVGKSMALVYALQYAHENNYLLVHIPWVL 105
+ L S + + G G+GK+ + ++ E L
Sbjct: 25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA-----AAKEGL 79
Query: 106 RWFAYPKEVSHSLTKEGMVDLNIDAAMWLRHFQKQNTKWLED 147
++ ++ L + + + +
Sbjct: 80 TVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 121
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 25.9 bits (57), Expect = 6.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 46 IRNCMLELVGYLKSMTNFDR---PSPRFVL-YGEHGVGKSMALVYALQYAHENNYLLVHI 101
+ + ELV YL+ + F + P+ VL G G GK++ L A+ A E I
Sbjct: 20 AKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL-LAKAI--AGEAKVPFFTI 76
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 25.5 bits (54), Expect = 8.6
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 57 LKSMTNFDRPSPRFVLYGEHGVGKS-----MALVYALQYAHENNYLLVHIPWVLRWFAYP 111
L + R ++ G+G ++ Q + L
Sbjct: 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73
Query: 112 KEVSHSLTKEGMVDLNIDAAMWLRHFQKQNTKW 144
+ ++G L +DA + ++ +
Sbjct: 74 PDYYTLAPEKGKNTLGVDAVREVTEKLNEHARL 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,284,239
Number of extensions: 58846
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 27
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)