RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3262
(103 letters)
>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 133
Score = 76.8 bits (188), Expect = 4e-20
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 4 KVREICEVIASGIQPLQNLTVLIYV----GEEKKREWAQHWIHRGLRAVEKLLSSSAGKY 59
+ ++ SGIQP QNL V+ Y+ E+K W + I +G A+EKLL + AGK+
Sbjct: 12 VNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKH 71
Query: 60 CVGDDISVADCCLIPQVFNA-RRFHVDLRPFPIVLRIDRELENHP 103
GD+I +AD L PQ+ A RF +++ P+P + + P
Sbjct: 72 ATGDEIYLADLFLAPQIHGAINRFQINMEPYPTLAKCYESYNELP 116
>d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 69.2 bits (168), Expect = 2e-17
Identities = 53/100 (53%), Positives = 71/100 (71%)
Query: 4 KVREICEVIASGIQPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGD 63
VR I ++IA GIQPLQNL+VL VGEE + WAQ+ I G A+E++L S+AG YCVGD
Sbjct: 11 SVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGD 70
Query: 64 DISVADCCLIPQVFNARRFHVDLRPFPIVLRIDRELENHP 103
++++AD CL+PQV NA RF VDL P+P + I++ L
Sbjct: 71 EVTMADLCLVPQVANAERFKVDLTPYPTISSINKRLLVLE 110
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 142
Score = 56.7 bits (136), Expect = 3e-12
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 6 REICEVIASGIQPLQNLTVLIYV-----GEEKKREWAQHWIHRGLRAVEKLLSSSAGKYC 60
R + ++ GI L + +L+ V + K + +R A EK+L S Y
Sbjct: 9 RALIDMYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYL 68
Query: 61 VGDDISVADCCLIPQVFNARRFHVDLR-PFPIVLRIDRELENHP 103
VG+ +S AD L+ ++ L FP++ + + N P
Sbjct: 69 VGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLP 112
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas
paucimobilis [TaxId: 13689]}
Length = 121
Score = 51.5 bits (123), Expect = 2e-10
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 3 GKVREICEVIASGIQPLQNLTVLIYVGE-EKKREWAQHWIHRGLRAVEKLLSSSAGKYCV 61
++ + S L ++ + A + L A++K L+ +
Sbjct: 12 YRLLSRLSFLGSEFHK--AFVPLFAPATSDEAKAAAAESVKNHLAALDKELA--GRDHYA 67
Query: 62 GDDISVADCCLIPQVFNARRFHVDLRPFPIVLRIDRELENHP 103
G+ SVAD L + +D+ +P + ++ P
Sbjct: 68 GNAFSVADIYLYVMLGWPAYVGIDMAAYPALGAYAGKIAQRP 109
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides
polygyrus [TaxId: 6339]}
Length = 129
Score = 51.2 bits (122), Expect = 3e-10
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 30 EEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCLIPQVFNARRFHVD-LRP 88
++ K + + L + K L ++ + VGD IS D + V + + +
Sbjct: 41 DKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEG 100
Query: 89 FPIVLRIDRELENHP 103
FP V ++ P
Sbjct: 101 FPEVKAHMERIQQTP 115
>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 49.6 bits (118), Expect = 9e-10
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 3 GKVREICEVIASGIQPLQNLTVLIYVGE-EKKREWAQHWIHRGLRAVEKLLSSSAGKYCV 61
K E IA+ + T L E+ + + + + L+ V + L +
Sbjct: 12 YKTIEWLNYIATELHK--GFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKD--EHWIC 67
Query: 62 GDDISVADCCLIPQVFNARRFHVDLRPFPIVLRIDRELENHP 103
G ++AD L + A ++L + + + P
Sbjct: 68 GQRFTIADAYLFTVLRWAYAVKLNLEGLEHIAAFMQRMAERP 109
>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 140
Score = 50.1 bits (119), Expect = 1e-09
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 6 REICEVIASGIQPLQNLTVLIYV-----GEEKKREWAQHWIHRGLRAVEKLLSSSAGKYC 60
R + ++ G L L ++ +++ AQ I R EK+L +
Sbjct: 9 RTLIDMYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFL 68
Query: 61 VGDDISVADCCLIPQVFNARRFH-VDLRPFPIVLRIDRELENHP 103
VG+ +S+AD L+ + L FP + +L N P
Sbjct: 69 VGNQLSLADVILLQTILALEEKIPNILSAFPFLQEYTVKLSNIP 112
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus),
(a1-4) [TaxId: 10090]}
Length = 143
Score = 49.7 bits (118), Expect = 1e-09
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 6 REICEVIASGIQPLQNLTVLIYV-----GEEKKREWAQHWIHRGLRAVEKLLSSSAGKYC 60
R ++ A G Q L + + EE R EK+L +
Sbjct: 10 RVRIDMYADGTQDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFL 69
Query: 61 VGDDISVADCCLIPQVFNARRFHVD-LRPFPIVLRIDRELENHP 103
VG+ +S AD L+ + L FP++ + N P
Sbjct: 70 VGNQLSWADIQLLEAILMVEELSAPVLSDFPLLQAFKTRISNIP 113
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-6 [TaxId: 123217]}
Length = 125
Score = 45.8 bits (108), Expect = 4e-08
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 13 ASGIQPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCL 72
+ + + + +E+ + + L +E+ ++ Y D ++VAD CL
Sbjct: 17 IGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTER--AYAAADHLTVADICL 74
Query: 73 IPQVFNARRFHVDLRPFPIVLR 94
+ V DL PFP +
Sbjct: 75 LGTVTALNWLKHDLEPFPHIRA 96
>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis
[TaxId: 584]}
Length = 121
Score = 44.6 bits (105), Expect = 8e-08
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Query: 3 GKVREICEVIASGIQPLQNLTVLIYVG-EEKKREWAQHWIHRGLRAVEKLLSSSAGKYCV 61
E +AS + + L E ++ + + +LS K
Sbjct: 12 YHQIEWLNFLASEVHK--GYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLS--KQKCVC 67
Query: 62 GDDISVADCCLIPQVFNARRFHVDLRPFPIVLRIDRELENHP 103
GD +VAD L A +DL + + P
Sbjct: 68 GDHFTVADAYLFTLSQWAPHVALDLTDLSHLQDYLARIAQRP 109
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-3 [TaxId: 123217]}
Length = 123
Score = 43.2 bits (101), Expect = 3e-07
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 4 KVREICEVIASGIQP-LQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVG 62
V + + + ++ + + + + L KY G
Sbjct: 8 VVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDG--HKYVAG 65
Query: 63 DDISVADCCLIPQVFNARRFHVDLRPFPIVLRIDRELENHP 103
D +++AD ++ V +L +P V
Sbjct: 66 DSLTIADLTVLATVSTYDVAGFELAKYPHVAAWYERTRKEA 106
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke
(Schistosoma haematobium) [TaxId: 6185]}
Length = 123
Score = 43.1 bits (101), Expect = 3e-07
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 31 EKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCLIPQVFNARRF--HVDLRP 88
+ +E + L + + L +S GK VGD +++AD LI + +
Sbjct: 38 KIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGK 97
Query: 89 FPIVLR-IDRELENHP 103
+P + + + L + P
Sbjct: 98 YPEIHKHRENLLASSP 113
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes
sloani pacificus) [TaxId: 6634]}
Length = 127
Score = 42.0 bits (98), Expect = 8e-07
Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 4 KVREICEVIASGIQPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAG--KYCV 61
+V EI E + + + +E ++ + R +E LL S+ G + V
Sbjct: 11 RVDEITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFV 70
Query: 62 GDDISVADCCLIPQVFNARRFHVD-LRPFPIVLRIDRELENHP 103
G+ +++AD + + + L+ P ++ + + + P
Sbjct: 71 GNSMTLADLHCYVALEVPLKHTPELLKDCPKIVALRKRVAECP 113
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 126
Score = 41.5 bits (97), Expect = 1e-06
Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 9 CEVIASGIQPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLS------SSAGKYCVG 62
++I G+Q + + ++ + + + + EKLL ++ Y VG
Sbjct: 11 ADMIFCGVQDIHYKFNNTNLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVG 70
Query: 63 DDISVADCCLIPQVFNARRFHVD-LRPFPIVLRIDRELENHP 103
++++ AD + + + L+ FP++ + + N P
Sbjct: 71 NNLTYADLAVFNLYDDIETKYPSSLKNFPLLKAHNEFISNLP 112
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-5 [TaxId: 123217]}
Length = 129
Score = 41.1 bits (96), Expect = 2e-06
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 17 QPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCLIPQV 76
Q + + + + + L E +L ++ + ++AD L V
Sbjct: 22 QRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQY--QWSAANHFTIADIALCVTV 79
Query: 77 FNARRFHVDLRPFPIVLRIDRELENHP 103
F DL P+P V + ++
Sbjct: 80 SQIEAFQFDLHPYPRVRAWLLKCKDEL 106
>d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen
regulation fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 151
Score = 39.9 bits (92), Expect = 7e-06
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 29 GEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCLIPQVFNARRFHVDLRP 88
E A + + + + VGD +++AD +P R ++++
Sbjct: 72 MELDTENAAAYSAGTTPMSQSRFFDY--PVWLVGDKLTIADLAFVPWNNVVDRIGINIKI 129
Query: 89 -FPIVLRIDRELENHP 103
FP V + + + P
Sbjct: 130 EFPEVYKWTKHMMRRP 145
>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-4 [TaxId: 123217]}
Length = 127
Score = 39.6 bits (92), Expect = 8e-06
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 31 EKKREWAQHWIHRGLRAVEKLLSSSAGKYCVGDDISVADCCLIPQVFNARRFHVDLRPFP 90
+ + L + L GDD ++AD ++ + DLR +
Sbjct: 38 PVGDPGRLRSMEQALEFLNTFLEGE-QYVAGGDDPTIADLSILATIATYEVAGYDLRRYE 96
Query: 91 IVLRIDRELENHP 103
V R
Sbjct: 97 NVQRWYERTSAIV 109
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus
[TaxId: 6282]}
Length = 131
Score = 37.7 bits (87), Expect = 4e-05
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 8 ICEVIASGIQPLQN--LTVLIYVGEEKKREWAQHWIHRGLRAVEKLLS--SSAGKYCVGD 63
++ G++ L ++ E +K + + + L EKLL+ + +GD
Sbjct: 9 YIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGD 68
Query: 64 DISVADCCLIPQVFNARRFHVD-LRPFPIVLRIDRELENHP 103
IS AD L ++ + L FP++ + +++ P
Sbjct: 69 KISYADYALFEELDVHQILDPHCLDKFPLLKVFHQRMKDRP 109
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 127
Score = 37.3 bits (86), Expect = 5e-05
Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 4 KVREICEVIASGIQPLQNL--TVLIYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGKYCV 61
++ + + I + + + E+K I L +E+ + + +
Sbjct: 11 QIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDN-DGHLA 69
Query: 62 GDDISVADCCLIPQVFNARRF--HVDLRPFPIVLRIDRELENHP 103
++ AD L P+P + + +
Sbjct: 70 LGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALE 113
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 35.1 bits (80), Expect = 3e-04
Identities = 11/100 (11%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 9 CEVIASGIQPLQNLTVLIYVGEEKKREWAQHW----IHRGLRAVEKLLSSSAGKYCVGDD 64
+ I + + ++ K + ++ ++ L ++ +G
Sbjct: 13 VDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGR--EWLIGMS 70
Query: 65 ISVADCCLIPQVFNARRFHVD-LRPFPIVLRIDRELENHP 103
++ AD F D L P ++ + ++++ P
Sbjct: 71 VTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIP 110
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I
[TaxId: 4577]}
Length = 129
Score = 30.2 bits (67), Expect = 0.019
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 4 KVREICEVIASGIQP-LQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLS-----SSAG 57
V EV A+ L + + + Q + L ++K+L +
Sbjct: 13 MVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKC 72
Query: 58 KYCVGDDISVADCCLIPQVFNARRFH--VDLRPFPIVLRIDRELENHP 103
KY GD +S+AD + L +P V L P
Sbjct: 73 KYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERP 120
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 29.7 bits (66), Expect = 0.034
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 26 IYVGEEKKREWAQHWIHRGLRAVEKLLSSSAGK-YCVGDDISVADCCLIPQVFNARRFH 83
++ + + + A + LR +E L G + D L+P +
Sbjct: 37 LWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYE 95
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1
(clic1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 28.9 bits (64), Expect = 0.065
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 35 EWAQHWIHRGLRAVEKLLSS-SAGKYCVGDDISVADCCLIPQVFNARRFHVDLRPFPI 91
+ + G+ S K+ G+++++ADC L+P++ + R F I
Sbjct: 51 NYLTSPLPEGVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTI 108
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl
transferase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 23.9 bits (52), Expect = 1.7
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 17 QPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKL 51
+ + T + VG + A+ W G R + K+
Sbjct: 5 KSFKLFTSVFGVGLKT----AEKWFRMGFRTLSKI 35
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 23.9 bits (51), Expect = 4.6
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 43 RGLRAVEKLLSSSAGKYCV--GDDISV 67
RG +K++ + G + G
Sbjct: 8 RGFSLAQKMVGRACGVKGIRPGAYCEP 34
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 22.7 bits (49), Expect = 5.2
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 17 QPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKL 51
+ LT + +G A+ ++ G++ +E L
Sbjct: 4 SSINFLTRVSGIGPSA----ARKFVDEGIKTLEDL 34
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
[TaxId: 10298]}
Length = 615
Score = 23.6 bits (51), Expect = 6.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 60 CVGDDISVADCCLIPQ 75
+GD ++V+ C +
Sbjct: 453 MLGDVMAVSTCVPVAA 468
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 22.2 bits (48), Expect = 8.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 16 IQPLQNLTVLIYVGEEKKREWAQHWIHRGLRAVEKLLS 53
+ L+ + + G + AQ W +G R++E + S
Sbjct: 4 VPVLELFSNIWGAGTKT----AQMWYQQGFRSLEDIRS 37
>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia
coli [TaxId: 562]}
Length = 115
Score = 22.7 bits (49), Expect = 8.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 32 KKREWAQHWIHR 43
+KR++ Q WI R
Sbjct: 51 RKRQFRQLWIAR 62
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 22.8 bits (49), Expect = 8.8
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 75 QVFNARRFHVDLRPFPIVLRIDRELENHP 103
++ AR H P P+ +RIDR +E P
Sbjct: 127 EIIAARAHH---NPAPLRVRIDRFMEEKP 152
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 384
Score = 22.9 bits (49), Expect = 9.3
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 29 GEEKKREWAQHWIHRGLR-AVEKLLSSS 55
K EW +++ R AVE L
Sbjct: 206 TAVPKAEWTNGEVYKSARLAVEGLWQEV 233
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.448
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,193
Number of extensions: 16755
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 36
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)