BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3263
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus
GN=Mex3c PE=2 SV=2
Length = 652
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/285 (47%), Positives = 168/285 (58%), Gaps = 43/285 (15%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDVA AKREILSAA+HFS +RASR K+G
Sbjct: 245 GCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNG 304
Query: 72 -ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 130
AL LS +PG T++VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDKEPVF
Sbjct: 305 PALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVF 364
Query: 131 EVTGNFPEGPGFESHHGQKIVFILTSNLYSFFDCRIFQRMNHHV-FSGSSGCSSASSSS- 188
EVTG PE + + + T N + F V F G + S+ SS+
Sbjct: 365 EVTG-MPENVDRAREEIEMHIAMRTGNYIELNEENDFHYNGTDVSFEGGTLGSAWLSSNP 423
Query: 189 -----------------------------SSSACAPHSSTQ-LDLGSIWSG--MSSLDKD 216
S+ A S T G+ W G + S+ +
Sbjct: 424 VPPSRARMMSNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFSTGNFWFGDTLPSVGSE 483
Query: 217 EGLGDSPSFDASPVNPSSIWS-YPPVSSTS-----PSGSISGSRQ 255
+ DSP+FD+ P + +IW+ + PV+ S PSG++ R+
Sbjct: 484 DLTVDSPAFDSLPTSAQTIWTPFEPVNPLSGFGSDPSGNMKTQRR 528
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT--CPMCRVPVNQAMRI 304
C +C + EV AL+PCGHN FC ECA + C+ RT CP+C+ V QA++I
Sbjct: 601 CVICFENEVIAALVPCGHNLFCMECANKICE-KRTPSCPVCQTAVTQAIQI 650
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 335 VGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 380
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 97 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134
V +VG +G IK ++ +TNTYI TP R +EP+F VTG
Sbjct: 237 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTG 274
>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
GN=MEX3C PE=1 SV=3
Length = 659
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/285 (47%), Positives = 168/285 (58%), Gaps = 43/285 (15%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDVA AKREILSAA+HFS +RASR K+G
Sbjct: 252 GCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNG 311
Query: 72 -ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 130
AL LS +PG T++VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDKEPVF
Sbjct: 312 PALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVF 371
Query: 131 EVTGNFPEGPGFESHHGQKIVFILTSNLYSFFDCRIFQRMNHHV-FSGSSGCSSASSSS- 188
EVTG PE + + + T N + F V F G + S+ SS+
Sbjct: 372 EVTG-MPENVDRAREEIEMHIAMRTGNYIELNEENDFHYNGTDVSFEGGTLGSAWLSSNP 430
Query: 189 -----------------------------SSSACAPHSSTQ-LDLGSIWSG--MSSLDKD 216
S+ A S T G+ W G + S+ +
Sbjct: 431 VPPSRARMISNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFSTGNFWFGDTLPSVGSE 490
Query: 217 EGLGDSPSFDASPVNPSSIWS-YPPVSSTS-----PSGSISGSRQ 255
+ DSP+FD+ P + +IW+ + PV+ S PSG++ R+
Sbjct: 491 DLAVDSPAFDSLPTSAQTIWTPFEPVNPLSGFGSDPSGNMKTQRR 535
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT--CPMCRVPVNQAMRI 304
C +C + EV AL+PCGHN FC ECA + C+ RT CP+C+ V QA++I
Sbjct: 608 CVICFENEVIAALVPCGHNLFCMECANKICE-KRTPSCPVCQTAVTQAIQI 657
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 342 VGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 387
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 97 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134
V +VG +G IK ++ +TNTYI TP R +EP+F VTG
Sbjct: 244 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTG 281
>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
Length = 601
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 119/140 (85%), Gaps = 5/140 (3%)
Query: 3 IFVVPSINPF--GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADH 60
I PS+ P+ GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+H
Sbjct: 106 ISPTPSLEPWLPGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEH 165
Query: 61 FSALRASR-KSGALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTY 118
FS +RASR K+ AL+ P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TY
Sbjct: 166 FSMIRASRNKNTALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTY 225
Query: 119 IVTPSRDKEPVFEVTGNFPE 138
IVTPSRDKEPVFEVTG PE
Sbjct: 226 IVTPSRDKEPVFEVTG-MPE 244
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDR-TCPMCRVPVNQAMRI 304
GSR C +C + EV AL+PCGHN FC ECA R C+ CP+C V QA+RI
Sbjct: 546 GSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI 599
>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1
Length = 507
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/187 (59%), Positives = 125/187 (66%), Gaps = 8/187 (4%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGA 72
GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+HFS +RASR A
Sbjct: 79 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREIISAAEHFSMIRASRNKNA 138
Query: 73 LS----PLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP 128
+ + P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDKEP
Sbjct: 139 AALNGGSVPAPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 198
Query: 129 VFEVTGNFPEGPGFESHHGQKIVFILTSNLYSFFDCRIFQRMNHHV---FSGSSGCSSAS 185
VFEVTG PE + + + T L D F V GS S
Sbjct: 199 VFEVTG-MPENVDRAREEIEAHIAVRTGGLIEVADENDFHANGTDVGFDLHGSLWSKSNQ 257
Query: 186 SSSSSSA 192
SS S A
Sbjct: 258 SSGSRKA 264
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDR-TCPMCRVPVNQAMRI 304
GSR+C +C + EV AL+PCGHN FC ECA R C+ ++ CP+C V QA+RI
Sbjct: 452 GSRECSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCPVCHAGVTQAIRI 505
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 171 VGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 216
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 51 KREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPY-KVVGLVVGPKGATIK 109
+R + A D S L A+ + P ++T V+VP + V +VG +G IK
Sbjct: 25 QRALQIALDQLSLLGLDNDESAMYD-NEPRKKSINMTECVQVPSSEHVAEIVGRQGCKIK 83
Query: 110 RIQHQTNTYIVTPSRDKEPVFEVTG 134
++ +TNTYI TP R +EPVF VTG
Sbjct: 84 ALRAKTNTYIKTPVRGEEPVFVVTG 108
>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
Length = 569
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/128 (80%), Positives = 113/128 (88%), Gaps = 3/128 (2%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+HFS +RASR K+
Sbjct: 86 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNT 145
Query: 72 ALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 130
AL+ P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDKEPVF
Sbjct: 146 ALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVF 205
Query: 131 EVTGNFPE 138
EVTG PE
Sbjct: 206 EVTG-MPE 212
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD-FDRTCPMCRVPVNQAMRI 304
GSR C +C + EV AL+PCGHN FC ECA R C+ + CP+C V QA+RI
Sbjct: 514 GSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI 567
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 176 VGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 51 KREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPY-KVVGLVVGPKGATIK 109
+R + A D S L GA S P ++T V VP + V +VG +G IK
Sbjct: 31 QRALQLALDQLSLLGLDSDEGASLYDSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIK 90
Query: 110 RIQHQTNTYIVTPSRDKEPVFEVTG 134
++ +TNTYI TP R +EPVF VTG
Sbjct: 91 ALRAKTNTYIKTPVRGEEPVFVVTG 115
>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1
Length = 520
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 111/123 (90%), Gaps = 3/123 (2%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEPVF+VTGR+EDVA A+REI+SAA+HFS +RASR KSG
Sbjct: 152 GCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSG 211
Query: 72 ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFE 131
A ++P +PG VTI VRVPY+VVGLVVGPKGATIKRIQ QTNTYI+TPSRD++PVFE
Sbjct: 212 AAFGVAP--ALPGQVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFE 269
Query: 132 VTG 134
+TG
Sbjct: 270 ITG 272
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCD-FDRTCPMCRVPVNQAMRI 304
C +C + EVT AL+PCGHN FC ECA R C+ D CP+C + QA+RI
Sbjct: 469 CMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVCHITATQAIRI 518
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +TNTYI TP R +PVF +TG +V RA+ EI
Sbjct: 239 VGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERAREEI 284
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 97 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGN 135
V +VG +G IK ++ +TNTYI TP R +EPVF VTG
Sbjct: 144 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGR 182
>sp|Q86XN8|MEX3D_HUMAN RNA-binding protein MEX3D OS=Homo sapiens GN=MEX3D PE=1 SV=3
Length = 651
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 108/128 (84%), Gaps = 3/128 (2%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKREILSAA+HFS +RA+R K+G
Sbjct: 199 GCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAG 258
Query: 72 AL-SPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 130
L P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ +T+TYIVTP RDKEPVF
Sbjct: 259 GLPGAAQGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVF 318
Query: 131 EVTGNFPE 138
VTG PE
Sbjct: 319 AVTG-MPE 325
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 239 PPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTC-DFDRTCPMCRVP 297
PP +S++P+ + R+C +C + EV AL+PCGHN FC +CA R C + CP CR P
Sbjct: 587 PPSASSAPALA----RECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTP 642
Query: 298 VNQAMRI 304
QA+ I
Sbjct: 643 ATQAIHI 649
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 289 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 334
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 97 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134
V +VG +G IK ++ +TNTYI TP R +EPVF VTG
Sbjct: 191 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 228
>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
Length = 643
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 110/128 (85%), Gaps = 4/128 (3%)
Query: 13 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 71
GCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKREILSA +HFS +RA+R K+G
Sbjct: 180 GCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSA-EHFSLIRATRSKAG 238
Query: 72 ALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 130
LS +P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ +T+TYIVTP RDKEPVF
Sbjct: 239 GLSGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVF 298
Query: 131 EVTGNFPE 138
VTG PE
Sbjct: 299 AVTG-MPE 305
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 253 SRQCYLCNDREVTHALIPCGHNFFCSECAERTC-DFDRTCPMCRVPVNQAMRI 304
+R+C +C++ E AL+PCGHN FC +CA R C + CP CR P QA+ I
Sbjct: 589 ARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI 641
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
+ P G IK ++ +T+TYI TP R +EPVF VTG E+V RA+ EI
Sbjct: 269 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 314
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 97 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134
V +VG +G IK ++ +TNTYI TP R +EPVF VTG
Sbjct: 172 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 209
>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis
GN=birc7-a PE=1 SV=1
Length = 401
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 237 SYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRV 296
S PP+S+ + R C +C D++V+ +PCGH C+ECA R CP+CR
Sbjct: 335 SAPPLSTEEQLRRLKEERMCKVCMDKDVSMLFVPCGHLVVCTECAPNL----RHCPICRA 390
Query: 297 PVNQAMRIIFN 307
+ ++R +
Sbjct: 391 AIRGSVRAFMS 401
>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis
GN=birc7-b PE=2 SV=2
Length = 345
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 237 SYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRV 296
S PP+S+ + R C +C D++V+ +PCGH C+ECA R CP+CR
Sbjct: 279 SGPPLSTEEQLQRLKEERMCKVCMDKDVSMLFVPCGHLVVCTECAPNL----RHCPICRA 334
Query: 297 PVNQAMRIIFN 307
+ ++R +
Sbjct: 335 AIRGSVRAFMS 345
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 240 PVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299
P +++S S SI + C +C E A +PCGH C++CA CP+CR P
Sbjct: 375 PSTNSSGSTSIPEEKLCKICYGAEYNTAFLPCGHVVACAKCASSVTK----CPLCRKPFT 430
Query: 300 QAMRIIFN 307
MR+ F+
Sbjct: 431 DVMRVYFS 438
>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus
GN=Birc2 PE=1 SV=1
Length = 612
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C DREV+ IPCGH C ECA R CP+CR + +R +
Sbjct: 559 LQEERTCKVCMDREVSIVFIPCGHLVVCQECAPSL----RKCPICRGTIKGTVRTFLS 612
>sp|A2AWP0|BIRC7_MOUSE Baculoviral IAP repeat-containing protein 7 OS=Mus musculus
GN=Birc7 PE=2 SV=1
Length = 285
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R+C +C DR V+ +PCGH F C+ECA + CP+CRVP+ +R +
Sbjct: 232 QLQEERRCKVCLDRAVSIVFVPCGH-FVCTECAPNL----QLCPICRVPICSCVRTFLS 285
>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus
GN=Birc3 PE=1 SV=2
Length = 600
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C DREV+ IPCGH C +CA R CP+CR + +R +
Sbjct: 547 LQEERMCKVCMDREVSIVFIPCGHLVVCKDCAPSL----RKCPICRGTIKGTVRTFLS 600
>sp|Q95M71|BIRC8_GORGO Baculoviral IAP repeat-containing protein 8 OS=Gorilla gorilla
gorilla GN=BIRC8 PE=2 SV=1
Length = 236
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 241 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCNAVIDF 229
Query: 301 AMRIIFN 307
R+ +
Sbjct: 230 KQRVFMS 236
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1
Length = 611
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C D+EV+ IPCGH C ECA R CP+CR + +R +
Sbjct: 558 LQEERTCKVCMDKEVSIVFIPCGHLVVCKECAPSL----RKCPICRGTIKGTVRTFLS 611
>sp|Q95M72|BIRC8_PANTR Baculoviral IAP repeat-containing protein 8 OS=Pan troglodytes
GN=BIRC8 PE=2 SV=1
Length = 236
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 241 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQDEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCSAVIDF 229
Query: 301 AMRIIFN 307
R+ +
Sbjct: 230 KQRVFMS 236
>sp|Q96P09|BIRC8_HUMAN Baculoviral IAP repeat-containing protein 8 OS=Homo sapiens
GN=BIRC8 PE=1 SV=2
Length = 236
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 241 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCSAVIDF 229
Query: 301 AMRIIFN 307
R+ +
Sbjct: 230 KQRVFMS 236
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 304
+G ++C +C A++PC H CS+CAE CP+CR P+++ ++I
Sbjct: 316 TGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKI 369
>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens
GN=BIRC2 PE=1 SV=2
Length = 618
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306
+ R C +C D+EV+ IPCGH C ECA R CP+CR + +R
Sbjct: 565 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 617
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana
GN=XBAT35 PE=2 SV=1
Length = 462
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 216 DEGLGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNF 275
D+G PS D++PV+ S S P S+ + C +C D +PCGH
Sbjct: 372 DDGPIHYPSIDSTPVDLPSAASLP-ASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVA 430
Query: 276 FCSECAERTCDFDRTCPMCRVPVNQAMRI 304
C C + + CP+CR ++Q +++
Sbjct: 431 GCMSCLKEIKSKNWGCPVCRAKIDQVIKL 459
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens
GN=BIRC3 PE=1 SV=2
Length = 604
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306
+ R C +C D+EV+ IPCGH C +CA R CP+CR + +R
Sbjct: 551 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRSTIKGTVRTFL 603
>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris
GN=BIRC3 PE=2 SV=1
Length = 604
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C D+EV+ IPCGH C +CA R CP+CR V +R +
Sbjct: 551 LQEERTCKVCMDKEVSIVFIPCGHLVVCRDCAPSL----RKCPICRGTVRGTVRTFLS 604
>sp|A9JTP3|BIRC7_XENTR Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis
GN=birc7 PE=2 SV=1
Length = 365
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C D +V+ +PCGH C+ECA R CP+CR + ++R +
Sbjct: 312 LKEERMCKVCMDNDVSMVFVPCGHLVVCTECAPNL----RHCPICRAAIRGSVRAFMS 365
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp.
japonica GN=XBOS34 PE=2 SV=1
Length = 513
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 304
C +C D V A IPCGH C C + CP+CR +NQ +R+
Sbjct: 462 CVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRL 510
>sp|Q96CA5|BIRC7_HUMAN Baculoviral IAP repeat-containing protein 7 OS=Homo sapiens
GN=BIRC7 PE=1 SV=2
Length = 298
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C DR V+ +PCGH C+ECA + CP+CR PV +R +
Sbjct: 246 LQEERTCKVCLDRAVSIVFVPCGH-LVCAECAPGL----QLCPICRAPVRSRVRTFLS 298
>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1
Length = 358
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+ R C +C D+EV+ IPCGH C +CA R CP+CR + +R +
Sbjct: 305 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRGTIKGTVRTFLS 358
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 255 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFNQFLFGKL 314
+C++C D T L CGH FCS C + + CP+C + Q M + +FL G+L
Sbjct: 31 RCHICKDMLQTPVLTQCGHT-FCSLCIREYLNKESRCPLCLAELRQNM--LQKEFLVGEL 87
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 242 SSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT-CPMCRVPVNQ 300
S+ P+GS +G +C +C D EV + CGH C C R R CP+CR P+
Sbjct: 482 SAPEPTGSRNG--ECTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKD 539
Query: 301 AMRI 304
++I
Sbjct: 540 VIKI 543
>sp|Q5M870|NEUL3_RAT E3 ubiquitin-protein ligase NEURL3 OS=Rattus norvegicus GN=Neurl3
PE=2 SV=1
Length = 254
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 246 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
P ++ +C +C L+PCGH+ FC CA CPMCR + +
Sbjct: 187 PESEVTSGEECVICFHNTANTRLMPCGHSQFCGSCAWHIFKDTARCPMCRWQIEE 241
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 218 GLGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFC 277
G+ + + A+ + + +W ++ I R+C +C E++ +PC H C
Sbjct: 726 GMNHTTNTKANSMASAKVWE----NNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLC 781
Query: 278 SECAE-RTCDFDRTCPMCRVPVNQAMRIIF 306
S+C + + CP CR + + ++ F
Sbjct: 782 SKCNQLHEKEAMEDCPSCRAKIQRRIQARF 811
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
Length = 498
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 241 VSSTSPSGSIS---------GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTC 291
+S +P+G++S +R C +C D EV +PCGH C++CA + C
Sbjct: 427 MSVATPNGNLSLEEENRQLKDARLCKVCLDEEVGVVFLPCGHLATCNQCAPSVAN----C 482
Query: 292 PMCRVPVNQAMRIIFN 307
PMCR + +R +
Sbjct: 483 PMCRADIKGFVRTFLS 498
>sp|Q8BUH7|RNF26_MOUSE Ring finger protein 26 OS=Mus musculus GN=Rnf26 PE=2 SV=1
Length = 424
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 254 RQCYLCNDREVTHALIPCGHNFFCSECAE---RTCDFDRTCPMCRVPVNQAMRI 304
++C +C D+ T L+PC H C C E R + R CP+CR + Q + +
Sbjct: 369 KKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRSILQTLNV 422
>sp|Q05AK5|MYLIB_DANRE E3 ubiquitin-protein ligase MYLIP-B OS=Danio rerio GN=mylipb PE=2
SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306
C LC ++E++ A PCGH F C CA + + CP+CR V++ +
Sbjct: 381 CALCCEQEISAAFCPCGHMFCCYNCASQL----QCCPVCRSEVDRVQHVYL 427
>sp|Q6R7C4|IAP4_OSHVF Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF106 PE=4 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECA-ERTCDFDRT--CPMCRVPVNQAMRIIFNQ 308
C C +R+ A IPCGH F C+ C E + + CPMCRV V + +I ++
Sbjct: 405 CKACYERKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIFLDE 460
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 255 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+C +C A++PC H CS+CA+ CP+CR P+ + + I N
Sbjct: 301 ECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMN 353
>sp|Q9BY78|RNF26_HUMAN RING finger protein 26 OS=Homo sapiens GN=RNF26 PE=2 SV=1
Length = 433
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 254 RQCYLCNDREVTHALIPCGHNFFCSECAE---RTCDFDRTCPMCRVPVNQAMRIIF 306
++C +C D+ T L+PC H C C E R + R CP+CR + Q + +
Sbjct: 378 KKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTLNVYL 433
>sp|P41437|IAP3_NPVOP E3 ubiquitin-protein ligase IAP-3 OS=Orgyia pseudotsugata
multicapsid polyhedrosis virus GN=IAP3 PE=1 SV=1
Length = 268
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 239 PPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298
P + + ++ R C +C E T +PCGH C +CA TCP+CR +
Sbjct: 204 PHIERPAVEAEVADDRLCKICLGAEKTVCFVPCGHVVACGKCAAGV----TTCPVCRGQL 259
Query: 299 NQAMRI 304
++A+R+
Sbjct: 260 DKAVRM 265
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 219 LGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCS 278
L S + + NPSS+ S ++ +C +C D ++PC H+F C
Sbjct: 118 LAQSSTSEEPDENPSSVTSCQASLWMGRVKQLTDEEECCICMDGR-ADLILPCAHSF-CQ 175
Query: 279 ECAERTCDFDRTCPMCRVPVNQA 301
+C ++ D R CP+CR+ + A
Sbjct: 176 KCIDKWSDRHRNCPICRLQMTGA 198
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 219 LGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCS 278
L S + + NPSS+ S ++ +C +C D ++PC H+F C
Sbjct: 118 LAQSSTSEEPDGNPSSVTSCQASLWMGRVKQLTDEEECCICMDGR-ADLILPCAHSF-CQ 175
Query: 279 ECAERTCDFDRTCPMCRVPVNQA 301
+C ++ D R CP+CR+ + A
Sbjct: 176 KCIDKWSDRHRNCPICRLQMTGA 198
>sp|A5FJZ1|PNP_FLAJ1 Polyribonucleotide nucleotidyltransferase OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=pnp
PE=3 SV=1
Length = 714
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 77 SPPTGVPGHV--TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134
+P V H I +P +G ++GP G I+ +Q T T IV D++ V E+ G
Sbjct: 548 APRADVKAHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILG 607
Query: 135 NFPEG 139
PEG
Sbjct: 608 TDPEG 612
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2
Length = 497
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 241 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+S+ + + C +C DR + +PCGH C +CAE CPMC +
Sbjct: 435 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 490
Query: 301 AMRIIF 306
+I
Sbjct: 491 KQKIFM 496
>sp|P41436|IAP_GVCPM Apoptosis inhibitor IAP OS=Cydia pomonella granulosis virus
(isolate Mexico/1963) GN=IAP PE=4 SV=1
Length = 275
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 240 PVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299
P + + S+ C +C E +PCGH C++CA CPMCR V
Sbjct: 212 PETKIEKEPQVEDSKLCKICYVEECIVCFVPCGHVVACAKCALSV----DKCPMCRKIVT 267
Query: 300 QAMRIIFN 307
+++ F+
Sbjct: 268 SVLKVYFS 275
>sp|Q8CJC5|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus musculus GN=Neurl3 PE=2
SV=1
Length = 254
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 246 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
P + +C +C L+PCGH+ FC CA CP+CR + +
Sbjct: 187 PESEVISGEECVICFHNTANTRLMPCGHSHFCGSCAWHIFKDTARCPICRWQIEE 241
>sp|Q8VDJ3|VIGLN_MOUSE Vigilin OS=Mus musculus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFE 143
VT+E +P K V+GPKG+ I++I N I P R++ PV V + E G E
Sbjct: 872 AQVTVECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQEN-GDE 930
Query: 144 SHHGQK 149
+ G++
Sbjct: 931 AGEGRE 936
Score = 37.0 bits (84), Expect = 0.22, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVT---------------GRKEDVARAKR- 52
+ P G +I+ + N IK P R E PV V ++ D +R
Sbjct: 889 MGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRC 948
Query: 53 EILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRI- 111
+I+ + A+++ AL L P VTIEV VP+ + ++G KG+ I+++
Sbjct: 949 DIIIISGRKEKCEAAKE--ALEALVP-------VTIEVEVPFDLHRYIIGQKGSGIRKMM 999
Query: 112 -QHQTNTYIVTPSRDKEPVFEVTG 134
+ + N ++ P + + +TG
Sbjct: 1000 DEFEVNIHVPAPELQSDTI-AITG 1022
>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2
Length = 496
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 241 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+S+ + + C +C DR + +PCGH C +CAE CPMC +
Sbjct: 434 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 489
Query: 301 AMRIIF 306
+I
Sbjct: 490 KQKIFM 495
>sp|Q96EH8|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo sapiens GN=NEURL3 PE=2
SV=2
Length = 262
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 246 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCR 295
P + +C +C L+PCGH +FC CA R CP+CR
Sbjct: 192 PEPKATPGEECAICFYHAANTRLVPCGHTYFCRYCAWRVFSDTAKCPVCR 241
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 243 STSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVP 297
STS S S +C LC PCGH FC C C+ + CP+CR P
Sbjct: 314 STSDSTSTEAVGKCTLCLSTRQHPTATPCGH-VFCWSCIMEWCNEKQECPLCRTP 367
>sp|Q9Z1A6|VIGLN_RAT Vigilin OS=Rattus norvegicus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFE 143
VT+E +P K V+GPKG+ I++I N I P R++ PV V + E G E
Sbjct: 872 AQVTLECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQEN-GDE 930
Query: 144 SHHGQK 149
+ G++
Sbjct: 931 AGEGRE 936
Score = 37.0 bits (84), Expect = 0.18, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVT---------------GRKEDVARAKR- 52
+ P G +I+ + N IK P R E PV V ++ D +R
Sbjct: 889 MGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRC 948
Query: 53 EILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQ 112
+I+ + A+++ AL L P VTIEV VP+ + ++G KG+ I+++
Sbjct: 949 DIIVISGRKEKCEAAKE--ALEALVP-------VTIEVEVPFDLHRYIIGQKGSGIRKMM 999
Query: 113 HQTNTYIVTPS 123
+ I P+
Sbjct: 1000 DEFEVNIHVPA 1010
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 245 SPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT-CPMCRVPVNQAMR 303
P+G +G +C +C D EV + CGH C C R R CP+CR P+ ++
Sbjct: 494 EPAGIKNG--ECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIK 551
Query: 304 I 304
I
Sbjct: 552 I 552
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,020,152
Number of Sequences: 539616
Number of extensions: 5455727
Number of successful extensions: 22790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 20353
Number of HSP's gapped (non-prelim): 1891
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)