Query psy3263
Match_columns 329
No_of_seqs 374 out of 2369
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 5E-25 1.7E-29 193.3 4.8 144 4-150 16-173 (178)
2 3krm_A Insulin-like growth fac 99.9 2.5E-24 8.4E-29 186.1 7.5 133 4-151 13-155 (163)
3 2jvz_A KH type-splicing, FAR u 99.9 3.2E-24 1.1E-28 185.1 8.0 139 4-151 12-159 (164)
4 2jzx_A Poly(RC)-binding protei 99.9 2.6E-24 8.8E-29 185.5 5.4 137 4-150 15-157 (160)
5 1j4w_A FUSE binding protein; s 99.9 5.4E-24 1.8E-28 186.1 6.0 145 4-149 13-173 (174)
6 3n89_A Defective in GERM LINE 99.7 5.2E-19 1.8E-23 171.2 4.4 149 4-155 40-266 (376)
7 2qnd_A FMR1 protein; KH domain 99.7 1.2E-18 4E-23 148.5 1.8 113 4-148 14-138 (144)
8 2dgr_A Ring finger and KH doma 99.6 2.9E-16 1E-20 121.5 5.3 69 80-149 4-73 (83)
9 2e3u_A PH-DIM2P, hypothetical 99.6 5.4E-16 1.9E-20 140.5 6.1 128 5-150 45-189 (219)
10 2dgr_A Ring finger and KH doma 99.5 9.3E-15 3.2E-19 113.1 2.8 55 4-58 20-74 (83)
11 1tua_A Hypothetical protein AP 99.5 3.3E-14 1.1E-18 126.1 5.3 122 5-144 15-151 (191)
12 2axy_A Poly(RC)-binding protei 99.4 4E-13 1.4E-17 101.3 4.5 56 4-59 15-71 (73)
13 1x4m_A FAR upstream element bi 99.3 7.6E-13 2.6E-17 104.5 4.7 69 82-151 11-85 (94)
14 1vig_A Vigilin; RNA-binding pr 99.3 6E-13 2.1E-17 99.7 3.7 55 4-58 15-70 (71)
15 1zzk_A Heterogeneous nuclear r 99.3 1.6E-12 5.5E-17 100.0 5.6 56 4-59 17-75 (82)
16 2axy_A Poly(RC)-binding protei 99.3 3E-13 1E-17 101.9 1.3 65 85-150 4-70 (73)
17 2ctl_A Vigilin; K homology typ 99.3 1.9E-12 6.5E-17 102.9 6.0 56 4-59 27-86 (97)
18 1ec6_A RNA-binding protein NOV 99.3 2E-12 6.8E-17 100.5 5.8 63 4-66 13-81 (87)
19 1wvn_A Poly(RC)-binding protei 99.3 5.6E-13 1.9E-17 102.5 2.3 68 83-151 3-74 (82)
20 2p2r_A Poly(RC)-binding protei 99.3 1.6E-12 5.4E-17 98.5 4.5 56 4-59 15-73 (76)
21 1wvn_A Poly(RC)-binding protei 99.3 1.5E-12 5.1E-17 100.1 4.4 56 4-59 16-74 (82)
22 1dtj_A RNA-binding neurooncolo 99.3 1.9E-12 6.4E-17 97.9 4.7 55 4-58 13-73 (76)
23 1x4n_A FAR upstream element bi 99.3 2E-12 6.7E-17 101.7 5.0 56 4-59 25-83 (92)
24 1x4n_A FAR upstream element bi 99.3 1E-12 3.5E-17 103.3 3.1 70 83-153 12-85 (92)
25 1zzk_A Heterogeneous nuclear r 99.3 1.4E-12 4.8E-17 100.3 3.9 66 85-151 6-75 (82)
26 1dtj_A RNA-binding neurooncolo 99.3 7.6E-13 2.6E-17 100.1 2.1 64 86-150 3-73 (76)
27 2ctf_A Vigilin; K homology typ 99.3 4.7E-14 1.6E-18 113.2 -5.0 85 39-150 4-90 (102)
28 2ctm_A Vigilin; K homology typ 99.3 3.4E-12 1.2E-16 101.0 5.6 58 4-61 27-86 (95)
29 2cte_A Vigilin; K homology typ 99.3 2E-12 7E-17 102.0 4.2 70 81-151 12-83 (94)
30 1vig_A Vigilin; RNA-binding pr 99.3 2.3E-12 7.9E-17 96.5 4.1 64 85-149 4-69 (71)
31 2opv_A KHSRP protein; KH domai 99.3 3.3E-12 1.1E-16 98.9 5.0 55 4-58 24-83 (85)
32 2ctm_A Vigilin; K homology typ 99.3 3E-12 1E-16 101.4 4.8 70 81-151 12-84 (95)
33 1j5k_A Heterogeneous nuclear r 99.3 2.4E-12 8.2E-17 100.5 4.1 56 4-59 24-82 (89)
34 2p2r_A Poly(RC)-binding protei 99.3 8.5E-13 2.9E-17 100.0 1.2 65 85-150 4-72 (76)
35 2hh3_A KH-type splicing regula 99.3 4.1E-12 1.4E-16 102.6 5.2 56 4-59 21-79 (106)
36 2vje_A E3 ubiquitin-protein li 99.3 1.1E-12 3.8E-17 96.2 1.6 56 251-306 6-63 (64)
37 1we8_A Tudor and KH domain con 99.2 4.8E-12 1.6E-16 101.7 5.3 62 4-65 25-91 (104)
38 2cte_A Vigilin; K homology typ 99.2 3.2E-12 1.1E-16 100.9 4.0 56 4-59 27-83 (94)
39 2hh2_A KH-type splicing regula 99.2 4.9E-12 1.7E-16 102.2 5.3 56 4-59 17-78 (107)
40 1x4m_A FAR upstream element bi 99.2 2.8E-12 9.6E-17 101.2 3.6 56 4-59 25-85 (94)
41 2ea5_A Cell growth regulator w 99.2 5E-12 1.7E-16 93.9 4.5 53 251-307 13-65 (68)
42 2ctk_A Vigilin; K homology typ 99.2 7.3E-12 2.5E-16 100.7 5.7 60 4-63 27-87 (104)
43 2d8t_A Dactylidin, ring finger 99.2 7.4E-12 2.5E-16 93.0 5.3 52 248-300 10-61 (71)
44 1j5k_A Heterogeneous nuclear r 99.2 1.4E-12 4.8E-17 101.9 1.3 69 83-152 11-83 (89)
45 2opv_A KHSRP protein; KH domai 99.2 3.6E-12 1.2E-16 98.7 3.1 65 85-150 13-83 (85)
46 2vje_B MDM4 protein; proto-onc 99.2 1.9E-12 6.4E-17 94.7 1.4 56 251-306 5-62 (63)
47 2hh2_A KH-type splicing regula 99.2 3.5E-12 1.2E-16 103.1 3.0 64 87-151 8-78 (107)
48 2yur_A Retinoblastoma-binding 99.2 6.9E-12 2.4E-16 94.1 4.3 57 243-300 5-64 (74)
49 4ayc_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 108.0 2.0 61 251-312 51-111 (138)
50 1ec6_A RNA-binding protein NOV 99.2 2.2E-12 7.5E-17 100.3 1.1 65 86-151 3-74 (87)
51 2ctl_A Vigilin; K homology typ 99.2 8.3E-12 2.8E-16 99.2 4.0 66 85-151 16-86 (97)
52 2egp_A Tripartite motif-contai 99.2 9.9E-12 3.4E-16 93.7 3.9 53 247-300 6-65 (79)
53 2csy_A Zinc finger protein 183 99.2 1.2E-11 4.2E-16 94.1 4.4 51 248-299 10-60 (81)
54 2hh3_A KH-type splicing regula 99.2 4.6E-12 1.6E-16 102.3 2.0 68 85-153 10-81 (106)
55 2ea6_A Ring finger protein 4; 99.2 1.1E-11 3.7E-16 90.9 3.6 54 246-300 8-68 (69)
56 2djb_A Polycomb group ring fin 99.2 1.9E-11 6.4E-16 91.1 4.7 55 246-301 8-63 (72)
57 1we8_A Tudor and KH domain con 99.2 6.9E-12 2.4E-16 100.7 2.0 66 85-151 14-85 (104)
58 4ic3_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 95.5 0.7 53 250-306 21-73 (74)
59 2ct2_A Tripartite motif protei 99.1 2.6E-11 9E-16 93.1 4.8 54 246-300 8-68 (88)
60 2ecw_A Tripartite motif-contai 99.1 3.4E-11 1.2E-15 91.5 4.7 53 247-300 13-71 (85)
61 1t1h_A Gspef-atpub14, armadill 99.1 2.7E-11 9.1E-16 91.4 4.0 51 249-300 4-55 (78)
62 2ysl_A Tripartite motif-contai 99.1 8.5E-11 2.9E-15 87.3 6.7 52 248-300 15-69 (73)
63 2ecy_A TNF receptor-associated 99.1 3.9E-11 1.3E-15 87.8 4.5 52 248-300 10-62 (66)
64 3ztg_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 93.7 3.9 52 247-299 7-61 (92)
65 2ctk_A Vigilin; K homology typ 99.1 2.1E-11 7.3E-16 98.0 2.8 54 86-140 17-71 (104)
66 2ecv_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 91.0 3.8 52 248-300 14-71 (85)
67 2ecg_A Baculoviral IAP repeat- 99.1 8.9E-12 3E-16 93.9 -0.2 52 251-306 23-74 (75)
68 2yho_A E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 94.0 0.7 53 251-307 16-68 (79)
69 2ect_A Ring finger protein 126 99.1 9.8E-11 3.3E-15 88.2 5.1 55 246-301 8-65 (78)
70 2ecn_A Ring finger protein 141 99.1 6.1E-11 2.1E-15 87.5 3.9 53 249-303 11-63 (70)
71 3lrq_A E3 ubiquitin-protein li 99.1 1.5E-11 5.2E-16 97.7 0.4 51 249-300 18-70 (100)
72 2ctj_A Vigilin; K homology typ 99.1 1.2E-10 4.1E-15 92.1 5.4 56 4-59 27-84 (95)
73 2ctf_A Vigilin; K homology typ 99.1 1.3E-10 4.3E-15 93.2 5.1 54 4-59 37-91 (102)
74 3l11_A E3 ubiquitin-protein li 99.0 5.7E-11 1.9E-15 96.3 2.6 52 248-300 10-62 (115)
75 3ng2_A RNF4, snurf, ring finge 99.0 4.3E-11 1.5E-15 88.3 1.7 50 250-300 7-63 (71)
76 1chc_A Equine herpes virus-1 r 99.0 5.4E-11 1.8E-15 87.3 2.0 55 251-306 3-58 (68)
77 1e4u_A Transcriptional repress 99.0 1.5E-10 5.1E-15 88.3 4.1 53 248-301 6-63 (78)
78 1iym_A EL5; ring-H2 finger, ub 99.0 2E-10 6.8E-15 80.6 4.3 49 250-299 2-54 (55)
79 2y43_A E3 ubiquitin-protein li 99.0 8.9E-11 3E-15 92.7 2.8 50 250-300 19-69 (99)
80 3fl2_A E3 ubiquitin-protein li 99.0 5.5E-11 1.9E-15 97.8 1.5 50 250-300 49-99 (124)
81 2jvz_A KH type-splicing, FAR u 99.0 2.4E-10 8.4E-15 97.8 5.4 56 4-59 101-159 (164)
82 2ysj_A Tripartite motif-contai 99.0 3.1E-10 1.1E-14 82.0 5.2 46 248-294 15-63 (63)
83 1wgm_A Ubiquitin conjugation f 99.0 4.7E-10 1.6E-14 89.1 6.4 51 249-300 18-69 (98)
84 2ecj_A Tripartite motif-contai 99.0 3.4E-10 1.1E-14 80.1 4.9 46 248-294 10-58 (58)
85 2ckl_A Polycomb group ring fin 99.0 1.6E-10 5.3E-15 92.8 3.2 50 250-300 12-62 (108)
86 2anr_A Neuro-oncological ventr 99.0 7.4E-11 2.5E-15 102.8 1.2 68 82-150 2-76 (178)
87 2kre_A Ubiquitin conjugation f 99.0 2.6E-10 8.7E-15 90.9 4.2 51 249-300 25-75 (100)
88 2xeu_A Ring finger protein 4; 99.0 1E-10 3.5E-15 84.3 1.2 48 252-300 2-56 (64)
89 3krm_A Insulin-like growth fac 99.0 3.5E-10 1.2E-14 97.1 4.7 56 4-59 95-155 (163)
90 2ctj_A Vigilin; K homology typ 99.0 1.5E-10 5E-15 91.6 2.0 69 81-150 12-83 (95)
91 2ep4_A Ring finger protein 24; 99.0 2.9E-10 9.9E-15 84.8 3.3 53 249-302 11-66 (74)
92 2kr4_A Ubiquitin conjugation f 99.0 2.2E-10 7.7E-15 88.5 2.8 51 249-300 10-60 (85)
93 1j4w_A FUSE binding protein; s 98.9 3.8E-10 1.3E-14 98.0 4.3 54 4-57 114-173 (174)
94 2kiz_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 82.2 4.3 52 249-301 10-64 (69)
95 2l0b_A E3 ubiquitin-protein li 98.9 3.6E-10 1.2E-14 88.2 3.5 50 250-300 37-89 (91)
96 2ecm_A Ring finger and CHY zin 98.9 2.9E-10 9.9E-15 79.7 2.4 47 252-299 4-54 (55)
97 2jzx_A Poly(RC)-binding protei 98.9 4.6E-10 1.6E-14 96.0 3.9 55 4-58 99-157 (160)
98 1x4j_A Ring finger protein 38; 98.9 4.3E-10 1.5E-14 84.2 3.2 50 250-300 20-72 (75)
99 1z6u_A NP95-like ring finger p 98.9 4.5E-10 1.5E-14 95.8 3.3 51 250-301 75-126 (150)
100 1g25_A CDK-activating kinase a 98.9 4.1E-10 1.4E-14 82.0 2.5 48 252-300 2-55 (65)
101 3hct_A TNF receptor-associated 98.9 7.4E-10 2.5E-14 90.3 3.1 52 248-300 13-65 (118)
102 2ckl_B Ubiquitin ligase protei 98.8 6.2E-10 2.1E-14 95.8 2.0 51 249-300 50-102 (165)
103 1jm7_A BRCA1, breast cancer ty 98.8 6.9E-10 2.4E-14 89.0 2.0 49 251-300 19-70 (112)
104 1bor_A Transcription factor PM 98.8 7.4E-10 2.5E-14 78.7 1.9 46 251-300 4-49 (56)
105 3t6p_A Baculoviral IAP repeat- 98.8 5.5E-10 1.9E-14 107.5 1.3 53 250-306 292-344 (345)
106 1jm7_B BARD1, BRCA1-associated 98.8 3.8E-10 1.3E-14 91.9 0.1 47 250-299 19-66 (117)
107 2qnd_A FMR1 protein; KH domain 98.8 1.5E-09 5.2E-14 92.0 3.5 57 4-60 77-142 (144)
108 1v87_A Deltex protein 2; ring- 98.8 2.7E-09 9.3E-14 86.0 3.8 48 253-301 25-95 (114)
109 3knv_A TNF receptor-associated 98.8 9.2E-10 3.1E-14 93.0 1.0 50 248-298 26-76 (141)
110 3n89_A Defective in GERM LINE 98.8 1.2E-09 4.1E-14 105.8 1.7 66 83-149 27-103 (376)
111 4ap4_A E3 ubiquitin ligase RNF 98.8 2.3E-09 8E-14 87.8 3.0 49 251-300 5-60 (133)
112 2yqr_A KIAA0907 protein; struc 98.8 4.6E-09 1.6E-13 86.3 4.4 58 2-59 27-98 (119)
113 2y1n_A E3 ubiquitin-protein li 98.7 2.9E-09 9.8E-14 103.6 3.3 54 251-305 330-384 (389)
114 2yu4_A E3 SUMO-protein ligase 98.7 4.7E-09 1.6E-13 82.4 3.8 47 250-297 4-59 (94)
115 1rmd_A RAG1; V(D)J recombinati 98.7 3.5E-09 1.2E-13 85.8 2.7 50 250-300 20-70 (116)
116 2c2l_A CHIP, carboxy terminus 98.7 6E-09 2E-13 95.7 3.8 49 251-300 206-255 (281)
117 2cpq_A FragIle X mental retard 98.7 2E-09 6.9E-14 84.2 0.2 54 4-59 25-80 (91)
118 2ecl_A Ring-box protein 2; RNF 98.7 1.1E-08 3.7E-13 78.0 4.0 46 253-299 15-75 (81)
119 1k1g_A SF1-BO isoform; splicin 98.6 1.3E-08 4.4E-13 85.0 3.9 58 2-59 21-98 (131)
120 3hcs_A TNF receptor-associated 98.6 1.6E-08 5.6E-13 87.2 3.0 51 249-300 14-65 (170)
121 2f42_A STIP1 homology and U-bo 98.6 1.8E-08 6.1E-13 88.4 3.1 51 249-300 102-153 (179)
122 2cpq_A FragIle X mental retard 98.6 1.1E-08 3.9E-13 80.0 1.5 57 82-140 11-68 (91)
123 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 4.2E-13 83.4 1.3 49 251-300 70-125 (133)
124 2e3u_A PH-DIM2P, hypothetical 98.5 4.7E-08 1.6E-12 88.3 4.0 52 4-59 139-190 (219)
125 2bl5_A MGC83862 protein, quaki 98.5 2.9E-08 9.9E-13 83.6 2.4 58 2-59 16-100 (140)
126 3dpl_R Ring-box protein 1; ubi 98.5 6.8E-08 2.3E-12 77.7 4.1 46 252-298 36-99 (106)
127 1k1g_A SF1-BO isoform; splicin 98.4 6.2E-08 2.1E-12 80.8 2.7 68 84-151 5-98 (131)
128 3htk_C E3 SUMO-protein ligase 98.4 9.4E-08 3.2E-12 88.2 2.6 50 250-300 178-232 (267)
129 1wim_A KIAA0161 protein; ring 98.2 2.9E-07 1E-11 71.7 1.9 45 252-297 4-61 (94)
130 1tua_A Hypothetical protein AP 98.2 5.4E-07 1.9E-11 79.7 3.8 52 4-59 108-159 (191)
131 4a0k_B E3 ubiquitin-protein li 98.2 2.4E-07 8.3E-12 75.8 0.2 45 253-298 48-110 (117)
132 2d8s_A Cellular modulator of i 98.2 1.6E-06 5.4E-11 66.1 4.4 49 251-300 13-70 (80)
133 2yqr_A KIAA0907 protein; struc 98.1 6.4E-07 2.2E-11 73.5 2.0 66 86-151 12-98 (119)
134 2bl5_A MGC83862 protein, quaki 98.0 2.2E-06 7.5E-11 72.1 3.5 37 87-123 3-45 (140)
135 2bay_A PRE-mRNA splicing facto 98.0 1.9E-06 6.6E-11 62.2 1.5 47 253-300 3-50 (61)
136 3u1k_A Polyribonucleotide nucl 97.9 1.1E-05 3.8E-10 83.1 5.8 52 86-140 567-618 (630)
137 3v69_A Protein filia; RNA-bind 97.8 1.7E-05 5.7E-10 66.0 5.0 60 4-63 66-127 (140)
138 2cxc_A NUSA; transcription ter 97.7 1.2E-05 4E-10 68.0 1.8 92 5-121 47-138 (144)
139 3vk6_A E3 ubiquitin-protein li 97.7 1.8E-05 6.3E-10 62.4 2.6 49 255-304 3-53 (101)
140 2ct0_A Non-SMC element 1 homol 97.4 0.00034 1.2E-08 52.4 6.4 49 251-300 13-64 (74)
141 4aid_A Polyribonucleotide nucl 97.2 0.00013 4.5E-09 76.1 3.1 52 86-140 570-621 (726)
142 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.0002 6.8E-09 51.4 2.0 48 251-299 4-58 (60)
143 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.00028 9.4E-09 67.5 1.2 52 251-303 306-376 (381)
144 2asb_A Transcription elongatio 96.7 0.00097 3.3E-08 61.0 4.0 93 5-123 128-221 (251)
145 3v69_A Protein filia; RNA-bind 96.6 0.00085 2.9E-08 55.7 2.6 52 87-139 57-110 (140)
146 1k0r_A NUSA; two component arr 96.6 0.0015 5.2E-08 62.8 4.2 94 5-124 251-345 (366)
147 4aid_A Polyribonucleotide nucl 96.5 0.0006 2.1E-08 71.2 0.8 52 4-58 580-632 (726)
148 1hh2_P NUSA, N utilization sub 95.6 0.0063 2.2E-07 58.2 3.6 93 5-123 247-340 (344)
149 2ko5_A Ring finger protein Z; 95.6 0.0096 3.3E-07 46.2 3.9 58 246-305 21-78 (99)
150 3cdi_A Polynucleotide phosphor 94.9 0.012 4E-07 61.6 3.2 52 86-140 560-611 (723)
151 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.014 4.9E-07 45.2 2.0 32 252-284 2-36 (101)
152 1e3p_A Guanosine pentaphosphat 94.1 0.013 4.4E-07 61.6 1.1 46 86-134 598-643 (757)
153 2cs3_A Protein C14ORF4, MY039 92.5 0.064 2.2E-06 40.4 2.4 36 251-287 13-52 (93)
154 3nw0_A Non-structural maintena 91.5 0.14 5E-06 46.2 4.1 47 253-300 180-229 (238)
155 3cdi_A Polynucleotide phosphor 90.6 0.048 1.7E-06 57.0 0.0 50 5-57 571-621 (723)
156 2cxc_A NUSA; transcription ter 89.5 0.15 5.1E-06 42.7 2.1 37 86-122 36-72 (144)
157 1e3p_A Guanosine pentaphosphat 83.5 0.059 2E-06 56.6 -4.3 52 4-58 608-660 (757)
158 2pt7_G HP1451, hypothetical pr 77.9 0.8 2.7E-05 38.6 1.6 35 86-120 33-67 (152)
159 1wh9_A 40S ribosomal protein S 76.4 0.76 2.6E-05 35.4 0.9 29 86-114 35-63 (92)
160 3m62_A Ubiquitin conjugation f 72.9 2.5 8.7E-05 45.3 4.2 50 250-300 888-938 (968)
161 1z60_A TFIIH basal transcripti 66.9 6.8 0.00023 27.6 4.0 40 254-294 16-58 (59)
162 3i2d_A E3 SUMO-protein ligase 65.4 2.4 8.3E-05 40.6 1.9 46 252-298 248-298 (371)
163 1wh9_A 40S ribosomal protein S 64.6 1.4 4.9E-05 33.8 0.1 18 6-23 47-64 (92)
164 4hhu_A OR280; engineered prote 61.4 30 0.001 27.9 7.3 34 16-50 24-57 (170)
165 2pt7_G HP1451, hypothetical pr 61.3 1.8 6.1E-05 36.4 0.1 50 6-57 45-95 (152)
166 4fo9_A E3 SUMO-protein ligase 60.2 3.5 0.00012 39.4 1.9 48 251-299 213-265 (360)
167 1weo_A Cellulose synthase, cat 58.8 5.7 0.0002 30.4 2.5 47 253-300 16-70 (93)
168 3u5c_D RP13, YS3, 40S ribosoma 50.6 5.2 0.00018 36.1 1.3 66 87-156 45-111 (240)
169 3iev_A GTP-binding protein ERA 50.3 5.8 0.0002 36.3 1.7 30 86-115 240-270 (308)
170 3gku_A Probable RNA-binding pr 48.5 4.5 0.00015 36.1 0.5 37 86-122 92-128 (225)
171 3j20_C 30S ribosomal protein S 48.3 5.1 0.00017 35.4 0.9 27 88-114 42-68 (210)
172 3gku_A Probable RNA-binding pr 47.5 3.5 0.00012 36.9 -0.3 51 6-56 104-155 (225)
173 3iz6_B 40S ribosomal protein S 46.3 5.2 0.00018 35.8 0.6 36 86-121 44-79 (227)
174 2xzm_C KH domain containing pr 45.5 7.3 0.00025 35.2 1.4 31 86-116 47-77 (243)
175 2lri_C Autoimmune regulator; Z 44.7 22 0.00075 25.2 3.7 44 253-297 12-59 (66)
176 2asb_A Transcription elongatio 44.6 5.7 0.00019 36.1 0.6 29 95-123 126-155 (251)
177 3r8n_C 30S ribosomal protein S 42.8 4.8 0.00016 35.5 -0.2 27 88-114 63-89 (206)
178 3iev_A GTP-binding protein ERA 42.6 5.5 0.00019 36.5 0.1 18 6-23 253-270 (308)
179 3i1m_C 30S ribosomal protein S 40.2 5.4 0.00019 35.8 -0.3 27 88-114 64-90 (233)
180 2vqe_C 30S ribosomal protein S 39.0 8.5 0.00029 34.7 0.8 28 88-115 64-91 (239)
181 3bbn_C Ribosomal protein S3; s 38.7 7.1 0.00024 34.6 0.2 65 88-156 72-137 (218)
182 2fiy_A Protein FDHE homolog; F 38.1 8.4 0.00029 35.9 0.7 47 251-297 180-231 (309)
183 3j20_C 30S ribosomal protein S 37.3 8.9 0.0003 33.8 0.7 17 6-22 52-68 (210)
184 2zkq_c 40S ribosomal protein S 37.1 6.6 0.00023 35.4 -0.2 34 86-119 44-77 (243)
185 2zet_C Melanophilin; complex, 36.6 4.9 0.00017 33.7 -1.1 45 252-297 67-117 (153)
186 3iz6_B 40S ribosomal protein S 36.0 9.2 0.00031 34.2 0.5 19 6-24 56-74 (227)
187 1wf3_A GTP-binding protein; GT 35.4 7.8 0.00027 35.5 -0.0 26 89-114 233-259 (301)
188 1k0r_A NUSA; two component arr 35.2 10 0.00035 36.3 0.7 29 95-123 249-278 (366)
189 1zbd_B Rabphilin-3A; G protein 34.4 4.1 0.00014 33.4 -1.9 46 251-297 53-107 (134)
190 3r8n_C 30S ribosomal protein S 34.2 11 0.00037 33.2 0.7 24 6-29 73-100 (206)
191 3ql9_A Transcriptional regulat 34.1 32 0.0011 27.9 3.5 46 252-298 56-112 (129)
192 2lbm_A Transcriptional regulat 33.8 36 0.0012 28.0 3.8 46 251-297 61-117 (142)
193 3u5c_D RP13, YS3, 40S ribosoma 32.9 9.5 0.00032 34.3 0.1 20 6-25 56-75 (240)
194 2xzm_C KH domain containing pr 30.6 13 0.00045 33.4 0.7 19 6-24 59-77 (243)
195 1wf3_A GTP-binding protein; GT 30.5 14 0.00049 33.7 0.9 18 6-23 243-260 (301)
196 1mm2_A MI2-beta; PHD, zinc fin 30.4 28 0.00096 24.1 2.2 47 251-298 7-57 (61)
197 3i1m_C 30S ribosomal protein S 30.3 13 0.00046 33.2 0.6 17 6-22 74-90 (233)
198 2zkq_c 40S ribosomal protein S 29.1 12 0.00041 33.7 0.1 19 6-24 56-74 (243)
199 2vqe_C 30S ribosomal protein S 28.8 17 0.0006 32.6 1.1 17 6-22 74-90 (239)
200 2pv0_B DNA (cytosine-5)-methyl 27.4 46 0.0016 31.9 3.8 46 252-298 92-149 (386)
201 1x64_A Alpha-actinin-2 associa 27.3 1.4E+02 0.0049 21.4 5.9 42 250-300 22-63 (89)
202 2l5u_A Chromodomain-helicase-D 26.7 62 0.0021 22.2 3.5 45 251-296 9-57 (61)
203 3o36_A Transcription intermedi 25.6 29 0.001 29.2 1.9 46 252-298 3-52 (184)
204 2jne_A Hypothetical protein YF 25.0 9.5 0.00032 29.6 -1.2 43 252-300 31-73 (101)
205 3bbn_C Ribosomal protein S3; s 23.9 17 0.00058 32.1 0.1 18 6-23 82-99 (218)
206 3u5n_A E3 ubiquitin-protein li 23.6 29 0.00099 29.9 1.5 47 251-298 5-55 (207)
207 1y02_A CARP2, FYVE-ring finger 23.4 8.6 0.0003 30.9 -1.8 45 252-297 18-66 (120)
208 1m3v_A FLIN4, fusion of the LI 23.1 45 0.0015 25.9 2.5 46 254-300 33-81 (122)
209 1x62_A C-terminal LIM domain p 23.1 1.1E+02 0.0037 21.5 4.4 40 251-299 13-52 (79)
210 1wil_A KIAA1045 protein; ring 23.0 1.4E+02 0.0048 22.5 4.9 36 247-284 9-47 (89)
211 3a1b_A DNA (cytosine-5)-methyl 22.8 58 0.002 27.3 3.2 42 252-297 78-134 (159)
212 2jrp_A Putative cytoplasmic pr 21.5 8 0.00027 29.0 -2.2 39 254-298 3-41 (81)
213 1go3_E DNA-directed RNA polyme 20.7 52 0.0018 27.6 2.5 27 86-115 7-34 (187)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=5e-25 Score=193.26 Aligned_cols=144 Identities=24% Similarity=0.275 Sum_probs=108.5
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC------CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLS 77 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~------~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~ 77 (329)
+||.||||+|++||+||++|||+|+++..+ .+|+|+|+|.+++|++|+.+|.+++..+....+... . .....
T Consensus 16 ~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~-~-~~~~~ 93 (178)
T 2anr_A 16 AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTE-P-VSILQ 93 (178)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-------------
T ss_pred HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCccccCC-c-ccccC
Confidence 579999999999999999999999998643 378999999999999999999998642211000000 0 00000
Q ss_pred C--CCCCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-----CCCeEEEECCCCCCcch-hhhhhhh
Q psy3263 78 P--PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGNFPEGPGF-ESHHGQK 149 (329)
Q Consensus 78 ~--p~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-----~e~~i~ItG~~pe~vei-e~~i~d~ 149 (329)
+ ..+.....+.++.||.+++|.||||+|++||+|+++|||+|++++.+ .++.|+|+| .+++|+. ..+|.+.
T Consensus 94 ~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 172 (178)
T 2anr_A 94 PQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSG-EPEQNRKAVELIIQK 172 (178)
T ss_dssp ------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred CccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Confidence 0 00123457899999999999999999999999999999999998764 468999999 9998833 3366554
Q ss_pred h
Q psy3263 150 I 150 (329)
Q Consensus 150 ~ 150 (329)
+
T Consensus 173 i 173 (178)
T 2anr_A 173 I 173 (178)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=2.5e-24 Score=186.15 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=108.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC----CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG----EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPP 79 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~----~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p 79 (329)
+||.||||+|++||+||++|||+|+++..+ .+|+|+|+|+++++.+|+.+|++++. +.... .|
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~------e~~~~-------~~ 79 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLK------EENFF-------GP 79 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHH------HTTSS-------CS
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh------ccccc-------cc
Confidence 579999999999999999999999998643 48999999999999999999998753 11000 01
Q ss_pred CCCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC----C-CCeEEEECCCCCCcchh-hhhhhhhh
Q psy3263 80 TGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----K-EPVFEVTGNFPEGPGFE-SHHGQKIV 151 (329)
Q Consensus 80 ~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~----~-e~~i~ItG~~pe~veie-~~i~d~~~ 151 (329)
......+.++.||.+++|.||||+|++||+|+++|||+|.++.+. + ++.|+|+| .+++|+.+ .+|.+++.
T Consensus 80 -~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 80 -KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILA 155 (163)
T ss_dssp -SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred -ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 223457889999999999999999999999999999999998653 2 33799999 99999333 36666554
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=3.2e-24 Score=185.12 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=108.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC-----CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSP 78 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-----~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~ 78 (329)
+||.||||+|++||+||++|||+|+++.++ .+++|+|+|.+++|.+|+.+|.++++. .... +.....
T Consensus 12 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e------~~~~--~~~~~~ 83 (164)
T 2jvz_A 12 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE------RDQG--GFGDRN 83 (164)
T ss_dssp CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTC------SSSC--CCSSCS
T ss_pred heeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh------ccCC--CCCCcc
Confidence 589999999999999999999999997543 378999999999999999999998541 1100 000000
Q ss_pred CCCCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcchhh-hhhhhhh
Q psy3263 79 PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGFES-HHGQKIV 151 (329)
Q Consensus 79 p~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~veie~-~i~d~~~ 151 (329)
........+.++.||.+++|.||||+|++||+|+++|||+|.+++.+ .++.|+|+| .+++|+.+. +|.+++.
T Consensus 84 ~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 84 EYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-PPDRCEHAARIINDLLQ 159 (164)
T ss_dssp SCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEES-CHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 00112235688999999999999999999999999999999998755 368899999 899994333 6665543
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-24 Score=185.47 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=108.5
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC-CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG-EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGV 82 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~ 82 (329)
++|.||||+|++||+||++|||+|+++..+ .+|+|+|+|++++|.+|+.+|.++++.. .... ..+. . ...
T Consensus 15 ~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~--~~~~--~~~~----~-~~~ 85 (160)
T 2jzx_A 15 EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEED--ISSS--MTNS----T-AAS 85 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHH--HTSC--CCSS----S-CCC
T ss_pred heeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhh--cccc--CCCC----c-cCC
Confidence 479999999999999999999999999654 4789999999999999999999875421 1100 0000 0 011
Q ss_pred CCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC----CCCeEEEECCCCCCcchh-hhhhhhh
Q psy3263 83 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KEPVFEVTGNFPEGPGFE-SHHGQKI 150 (329)
Q Consensus 83 ~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~----~e~~i~ItG~~pe~veie-~~i~d~~ 150 (329)
....+.++.||.+++|.||||||++||+|+++|||+|+++++. +++.|+|+| .+++|+.+ .+|.+++
T Consensus 86 ~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 86 RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVM 157 (160)
T ss_dssp CCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Confidence 2247899999999999999999999999999999999998632 678999999 99999333 3555544
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.89 E-value=5.4e-24 Score=186.14 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=105.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC---CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCC--C-CCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGAL--S-PLS 77 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~---~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~--~-~~~ 77 (329)
+||.||||+|++||+||++|||+|+++... .+|+|+|+|++++|++|+.+|.++++.+..-........+ . ...
T Consensus 13 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~ 92 (174)
T 1j4w_A 13 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQ 92 (174)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC------------------
T ss_pred heeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCC
Confidence 579999999999999999999999997432 3789999999999999999999986533210000000000 0 000
Q ss_pred ---CCCCCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCC------CCCCeEEEECCCCCCcchhh-hhh
Q psy3263 78 ---PPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR------DKEPVFEVTGNFPEGPGFES-HHG 147 (329)
Q Consensus 78 ---~p~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~------~~e~~i~ItG~~pe~veie~-~i~ 147 (329)
......+..+.++.||.+++|.||||+|++||+|+++|||+|+++++ ..++.|+|+| ++++|+.+. +|.
T Consensus 93 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~ 171 (174)
T 1j4w_A 93 GNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIE 171 (174)
T ss_dssp -----------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHH
T ss_pred CccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHH
Confidence 00011234688999999999999999999999999999999999865 2568899999 999994433 655
Q ss_pred hh
Q psy3263 148 QK 149 (329)
Q Consensus 148 d~ 149 (329)
++
T Consensus 172 ~~ 173 (174)
T 1j4w_A 172 EK 173 (174)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 6
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.74 E-value=5.2e-19 Score=171.22 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=109.3
Q ss_pred eeeeeecCCC--hHHHHHHHHhCCeEEecCCC--------CcceEEEecCHHHHHHHHHHHHHHh---------------
Q psy3263 4 FVVPSINPFG--CKIKALRAKTNTYIKTPVRG--------EEPVFVVTGRKEDVARAKREILSAA--------------- 58 (329)
Q Consensus 4 ~VG~IIGkgG--~~Ik~Lr~~Tga~I~ip~~~--------~ervi~ItG~~e~v~~A~~~I~~i~--------------- 58 (329)
||+.|||||| ++|++|+++|||+|++|.++ ....|+|+|.+++|++|+.+|.+++
T Consensus 40 ~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~Pl~i~~elp~~~i~~ 119 (376)
T 3n89_A 40 YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMALSKMKMPL 119 (376)
T ss_dssp GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCEEEEEEECTTCSSCH
T ss_pred hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCCceEEEEccccccCc
Confidence 6789999999 99999999999999999655 1467999999999999999998741
Q ss_pred -hhhhHhhhcccCCCCCCC-------------------CCCC---------------------CCCCceEEEEEecCccc
Q psy3263 59 -DHFSALRASRKSGALSPL-------------------SPPT---------------------GVPGHVTIEVRVPYKVV 97 (329)
Q Consensus 59 -e~~~~~~~~~~~~~~~~~-------------------~~p~---------------------~~~g~~t~~i~VP~~~v 97 (329)
+....+.. ....++.. |+.. ......+.++.|+..+|
T Consensus 120 ~~l~~~I~q--q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~~s~~v~V~~~~H 197 (376)
T 3n89_A 120 HELQAHVRQ--NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENNFTLHFTLSTYYV 197 (376)
T ss_dssp HHHHHHHHH--CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSCEEEEEEEEGGGH
T ss_pred chhhhhhcc--ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccceEEEEEeCHHHH
Confidence 11112221 11111110 1100 01124688999999999
Q ss_pred ceeecCCC--chHHHHHHhcCceEEcCCCCC-------CCeEEEECCCCCCc-chhhhhhhhhh--hhhc
Q psy3263 98 GLVVGPKG--ATIKRIQHQTNTYIVTPSRDK-------EPVFEVTGNFPEGP-GFESHHGQKIV--FILT 155 (329)
Q Consensus 98 G~IIGkgG--~tIk~Iq~~tga~I~ip~~~~-------e~~i~ItG~~pe~v-eie~~i~d~~~--~~~~ 155 (329)
..|||++| ..|++|+++|||+|.+|..++ ...|+|+| .+++| ++..+|.+++. ..||
T Consensus 198 ~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lLPv~l~Fd 266 (376)
T 3n89_A 198 DQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLLPISMCFN 266 (376)
T ss_dssp HHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEES-CHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhCCEEEEEe
Confidence 99999999 677999999999999997532 24699999 99999 55558888887 5566
No 7
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=1.2e-18 Score=148.47 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=87.7
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEec--CCCCcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCC
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTP--VRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTG 81 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip--~~~~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~ 81 (329)
+||.+|||+|++|++|++++| |++. .++.+..+...+.+++|.+|+.++ .+
T Consensus 14 ~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~~~~i~~~~~p~~v~~~~~~l-~~------------------------ 66 (144)
T 2qnd_A 14 LMGLAIGTHGANIQQARKVPG--VTAIDLDEDTCTFHIYGEDQDAVKKARSFL-EF------------------------ 66 (144)
T ss_dssp GHHHHHCGGGHHHHHHHTSTT--EEEEEEETTTTEEEEEESSHHHHHHHHHHH-CE------------------------
T ss_pred ceeeEECCChhHHHHHHHHHC--CeEeccCCCchheeeccCCHHHHHHHHHhh-hc------------------------
Confidence 589999999999999999999 5543 333345554556799999997743 22
Q ss_pred CCCceEEEEEecCcccceeecCCCchHHHHHHhcCc-eEEcCCCC------CCC--eEEEECCCCCCcchhh-hhhh
Q psy3263 82 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNT-YIVTPSRD------KEP--VFEVTGNFPEGPGFES-HHGQ 148 (329)
Q Consensus 82 ~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga-~I~ip~~~------~e~--~i~ItG~~pe~veie~-~i~d 148 (329)
...++.||.+.+|++|||+|++||.|++.||+ +|+|++.+ +++ .|+|+| ++++|+.+. +|.+
T Consensus 67 ----~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 ----AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVG-TKDSIANATVLLDY 138 (144)
T ss_dssp ----EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHH
T ss_pred ----ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEe-CHHHHHHHHHHHHH
Confidence 13789999999999999999999999999997 99998643 133 389999 999994443 4443
No 8
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.9e-16 Score=121.55 Aligned_cols=69 Identities=64% Similarity=0.971 Sum_probs=62.5
Q ss_pred CCCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCcchhh-hhhhh
Q psy3263 80 TGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFES-HHGQK 149 (329)
Q Consensus 80 ~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~veie~-~i~d~ 149 (329)
++.+++.++++.||+++||+||||||++||+||++|||+|++|+++++++|+|+| .+++++.+. +|.+.
T Consensus 4 ~~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG-~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 4 GSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTG-MPENVDRAREEIEAH 73 (83)
T ss_dssp CCSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEE-CTTTHHHHHHHHHHH
T ss_pred CCCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEc-CHHHHHHHHHHHHHH
Confidence 3778899999999999999999999999999999999999999888899999999 999995544 66664
No 9
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.60 E-value=5.4e-16 Score=140.54 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=92.6
Q ss_pred eeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEecC-----HHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR-----KEDVARAKREILSAADHFSALRASRKSGALSPLSPP 79 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG~-----~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p 79 (329)
+|.|||++|++||.|+++||++|++.. ++..|+|.|. ++++++|+++|.+++.-|..-.+....
T Consensus 45 ig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll--------- 113 (219)
T 2e3u_A 45 IAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLL--------- 113 (219)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGG---------
T ss_pred hhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceec---------
Confidence 688999999999999999999999973 3456788775 699999999999986311111110000
Q ss_pred CCCCCceEEEEEec-----------CcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCcchhh-hhh
Q psy3263 80 TGVPGHVTIEVRVP-----------YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFES-HHG 147 (329)
Q Consensus 80 ~~~~g~~t~~i~VP-----------~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~veie~-~i~ 147 (329)
.++.....+.++ .+.+|+||||+|+|||.|++.|||+|.++. +.|.|.| .+++++++. +|.
T Consensus 114 --~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G-~~~~i~~A~~~i~ 186 (219)
T 2e3u_A 114 --NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIG-NPIQIEIAKTAIE 186 (219)
T ss_dssp --STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEE-CHHHHHHHHHHHH
T ss_pred --cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC----eEEEEEe-CHHHHHHHHHHHH
Confidence 011111123322 247899999999999999999999999963 5799999 999995544 454
Q ss_pred hhh
Q psy3263 148 QKI 150 (329)
Q Consensus 148 d~~ 150 (329)
+++
T Consensus 187 ~li 189 (219)
T 2e3u_A 187 KLA 189 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.3e-15 Score=113.09 Aligned_cols=55 Identities=45% Similarity=0.665 Sum_probs=52.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~ 58 (329)
+||.||||+|++||+||++|||+|++|.++++++|+|+|.+++|++|+++|.+++
T Consensus 20 ~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 20 VVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp HHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred HeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998888899999999999999999999874
No 11
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=3.3e-14 Score=126.10 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=94.4
Q ss_pred eeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEe-----cCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVT-----GRKEDVARAKREILSAADHFSALRASRKSGALSPLSPP 79 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~It-----G~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p 79 (329)
||.|||++|+++|.|++++|++|++. ..++.++|. |.+.++.+|++.|.+++.-|+.-.+..-..
T Consensus 15 vg~liGk~g~~~k~i~e~~g~~i~id--~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~-------- 84 (191)
T 1tua_A 15 LGAVIGPRGEVKAEIMRRTGTVITVD--TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLE-------- 84 (191)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEEE--TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGS--------
T ss_pred hhHHHhcCHhHHHHHHHHHCcEEEEE--cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhccc--------
Confidence 68899999999999999999999996 346677888 999999999999998876554433321111
Q ss_pred CCCCCceEEEEEec----------CcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCcchhh
Q psy3263 80 TGVPGHVTIEVRVP----------YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFES 144 (329)
Q Consensus 80 ~~~~g~~t~~i~VP----------~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~veie~ 144 (329)
+......+.++ .+..|.||||+|.|||.|++.|||+|.+... .|.|.| .+++++++.
T Consensus 85 ---Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~----~v~i~G-~~~~i~~Ar 151 (191)
T 1tua_A 85 ---EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY----EVAIIG-DYERAMAAK 151 (191)
T ss_dssp ---TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS----EEEEEE-EHHHHHHHH
T ss_pred ---CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC----EEEEEe-ChHHHHHHH
Confidence 11111223333 3568999999999999999999999999643 799999 999995544
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.36 E-value=4e-13 Score=101.25 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=51.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
++|.||||||++||+||++|||+|+++..+. +|+|+|+|.+++|.+|+.+|.++++
T Consensus 15 ~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 15 EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999997643 8999999999999999999998854
No 13
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=7.6e-13 Score=104.47 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=60.1
Q ss_pred CCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-----CCCeEEEECCCCCCcchhh-hhhhhhh
Q psy3263 82 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGNFPEGPGFES-HHGQKIV 151 (329)
Q Consensus 82 ~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-----~e~~i~ItG~~pe~veie~-~i~d~~~ 151 (329)
.|++.+.++.||.+++|+||||+|++||+|+++|||+|+|+++. .+++|+|+| ++++|+.+. +|.+++.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIR 85 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999998753 578899999 999994444 7777664
No 14
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.32 E-value=6e-13 Score=99.74 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=50.4
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-cceEEEecCHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-ervi~ItG~~e~v~~A~~~I~~i~ 58 (329)
+||.||||||.+||+|+++|||+|++|.+++ ++.|+|+|..+++++|+++|.+++
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999997664 678999999999999999998863
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.31 E-value=1.6e-12 Score=99.95 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=50.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC---CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~---~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+++... .++.|+|+|++++|++|+.+|.+++.
T Consensus 17 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 17 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp TGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998542 37899999999999999999999864
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.31 E-value=3e-13 Score=101.94 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=56.2
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-CCCeEEEECCCCCCc-chhhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGNFPEGP-GFESHHGQKI 150 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-~e~~i~ItG~~pe~v-eie~~i~d~~ 150 (329)
+.+.++.||.+.+|.||||||++||+|+++|||+|+++++. .+|+|+|+| .++++ ....+|.+.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G-~~~~v~~A~~~I~~~l 70 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-PTNAIFKAFAMIIDKL 70 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEe-CHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998764 678999999 89998 3333666544
No 17
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=1.9e-12 Score=102.86 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=51.6
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC----cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE----EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~----ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||||++||+|+++|||+|+||.+++ ++.|+|+|+++++++|+.+|..++.
T Consensus 27 ~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 27 YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp THHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999997763 5799999999999999999999864
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=2e-12 Score=100.49 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=54.1
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC------CcceEEEecCHHHHHHHHHHHHHHhhhhhHhhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADHFSALRA 66 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~------~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~ 66 (329)
+||.||||||++||+|+++|||+|+++.++ .++.|+|+|+++++++|+.+|.+++.....-++
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r~ 81 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRA 81 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc
Confidence 579999999999999999999999999653 368999999999999999999998764443333
No 19
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=5.6e-13 Score=102.49 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcch-hhhhhhhhh
Q psy3263 83 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGF-ESHHGQKIV 151 (329)
Q Consensus 83 ~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~vei-e~~i~d~~~ 151 (329)
..+.+.++.||.+++|.||||||++||+|+++|||+|+++... .++.|+|+| .+++++. ..+|.+++.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG-SAASISLAQYLINARLS 74 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-CHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999999998642 588999999 9999943 337766654
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=98.51 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=50.5
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC---CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~---~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||||++||+||++|||+|+++... .++.|+|+|++++|++|+.+|.++++
T Consensus 15 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 15 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998532 38999999999999999999998853
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=1.5e-12 Score=100.10 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=50.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC---CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~---~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||||++||+||++|||+|+++... .++.|+|+|++++|++|+.+|.+++.
T Consensus 16 ~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 16 LIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLS 74 (82)
T ss_dssp GHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred hccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998532 38999999999999999999999864
No 22
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.29 E-value=1.9e-12 Score=97.90 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=50.3
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC------CcceEEEecCHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~------~ervi~ItG~~e~v~~A~~~I~~i~ 58 (329)
+||.||||||++||+||++|||+|+++.++ .++.|+|+|+++++++|+.+|.+++
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 73 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHC
T ss_pred HcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999653 2689999999999999999999875
No 23
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.29 E-value=2e-12 Score=101.69 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=51.0
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC---CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~---~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+++.+. .++.|+|+|++++|++|+.+|.++++
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999653 27899999999999999999999864
No 24
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.28 E-value=1e-12 Score=103.34 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=59.6
Q ss_pred CCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcch-hhhhhhhhhhh
Q psy3263 83 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGF-ESHHGQKIVFI 153 (329)
Q Consensus 83 ~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~vei-e~~i~d~~~~~ 153 (329)
....+.++.||.+++|.||||+|++||+|+++|||+|+|+.+. .++.|+|+| ++++|+. ..+|.+++...
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-TPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 4458899999999999999999999999999999999998753 468999999 8999944 44777776543
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.28 E-value=1.4e-12 Score=100.29 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=57.0
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcchh-hhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGFE-SHHGQKIV 151 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~veie-~~i~d~~~ 151 (329)
..+.++.||.+++|.||||+|++||+|+++|||+|+++... .++.|+|+| ++++|+.+ .+|.+++.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-TQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999998642 568999999 99999443 37766655
No 26
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.28 E-value=7.6e-13 Score=100.07 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=54.7
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC------CCCeEEEECCCCCCcchhh-hhhhhh
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGNFPEGPGFES-HHGQKI 150 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~------~e~~i~ItG~~pe~veie~-~i~d~~ 150 (329)
.+.++.||.+.+|.||||||++||+|+++|||+|++++++ .++.|+|+| ++++++.+. +|.+++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-SPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-SHHHHHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-CHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999752 468899999 899984333 665544
No 27
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=4.7e-14 Score=113.23 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=68.0
Q ss_pred EEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCCCCceEEEEEecCcccceeecCCCchHHHHHHh-cCc
Q psy3263 39 VVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQ-TNT 117 (329)
Q Consensus 39 ~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~-tga 117 (329)
.|+|++++|++|+.+|+++++ ...|.+|.||..+|+.|||++|++||+|+++ +++
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~------------------------~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v 59 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKAN------------------------SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKV 59 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCC------------------------CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSS
T ss_pred ccCcCHHHHHHHHHHHHHHhc------------------------CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCc
Confidence 367888888888888865532 2278999999999999999999999999997 599
Q ss_pred eEEcCCCCCCCeEEEECCCCCCc-chhhhhhhhh
Q psy3263 118 YIVTPSRDKEPVFEVTGNFPEGP-GFESHHGQKI 150 (329)
Q Consensus 118 ~I~ip~~~~e~~i~ItG~~pe~v-eie~~i~d~~ 150 (329)
+|+||. +++.|+|+| .++.| .+..+|.+++
T Consensus 60 ~I~fp~--~~~~ItI~G-~~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 60 HIEFTE--GEDKITLEG-PTEDVSVAQEQIEGMV 90 (102)
T ss_dssp EEEECS--SSCEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred EEEeCC--CCCEEEEEC-CHHHHHHHHHHHHHHH
Confidence 999998 467899999 99999 3333444333
No 28
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=3.4e-12 Score=101.04 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=52.4
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC--cceEEEecCHHHHHHHHHHHHHHhhhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE--EPVFVVTGRKEDVARAKREILSAADHF 61 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~--ervi~ItG~~e~v~~A~~~I~~i~e~~ 61 (329)
++|.||||||.+||+|+++|||+|++|.+++ ++.|+|+|.+++|++|+.+|.++++.+
T Consensus 27 ~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 27 VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999997764 678999999999999999999987533
No 29
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=2e-12 Score=102.02 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-CCCeEEEECCCCCCc-chhhhhhhhhh
Q psy3263 81 GVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGNFPEGP-GFESHHGQKIV 151 (329)
Q Consensus 81 ~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-~e~~i~ItG~~pe~v-eie~~i~d~~~ 151 (329)
.+..+.+.++.||.+++|+|||+||++||+|+++|||+|+||+.+ .++.|+|+| .++++ ....+|.+.+.
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-TKEGIEKARHEVLLISA 83 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-CHHHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999999999999999755 468999999 79998 33336666554
No 30
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.27 E-value=2.3e-12 Score=96.54 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=54.4
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-CCCeEEEECCCCCCc-chhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGNFPEGP-GFESHHGQK 149 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-~e~~i~ItG~~pe~v-eie~~i~d~ 149 (329)
..+.++.||.+++|.|||+||++||+|+++|||+|+||++. +++.|+|+| .++++ +...+|.++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G-~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEG-DPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEE-SSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEc-CHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999765 567899999 78888 333355543
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=98.89 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=50.1
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-----cceEEEecCHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-----EPVFVVTGRKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-----ervi~ItG~~e~v~~A~~~I~~i~ 58 (329)
+||.||||+|++||+|+++|||+|+++.++. +|.|+|+|+++++++|+.+|.+++
T Consensus 24 ~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 24 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999986443 678999999999999999999875
No 32
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=3e-12 Score=101.35 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=58.7
Q ss_pred CCCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC--CCCeEEEECCCCCCcchhh-hhhhhhh
Q psy3263 81 GVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--KEPVFEVTGNFPEGPGFES-HHGQKIV 151 (329)
Q Consensus 81 ~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~--~e~~i~ItG~~pe~veie~-~i~d~~~ 151 (329)
.+..+.+.++.||.+++|.|||+||++||+|+++|||+|+||.+. +++.|+|+| .+++|+.+. +|.+++.
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G-~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG-LPENVEEAIDHILNLEE 84 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEES-CHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999765 467899999 899993333 5555443
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.26 E-value=2.4e-12 Score=100.54 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=50.7
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCC---CCcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVR---GEEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~---~~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+++.. ..++.|+|+|++++|++|+.+|.+++.
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999853 237999999999999999999999864
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.25 E-value=8.5e-13 Score=99.99 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=56.0
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcchh-hhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGFE-SHHGQKI 150 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~veie-~~i~d~~ 150 (329)
..+.++.||.+++|.||||||++||+|+++|||+|+++... .++.|+|+| .+++++.+ .+|.+++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-SAASISLAQYLINVRL 72 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-CHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999998733 588999999 89999433 3666654
No 35
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=4.1e-12 Score=102.59 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=50.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC---cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~---ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+|+++|+|+|+|+.+.+ +|+|+|+|++|+|++|+++|.++++
T Consensus 21 ~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 21 SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 79 (106)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999985442 6899999999999999999999864
No 36
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.25 E-value=1.1e-12 Score=96.18 Aligned_cols=56 Identities=25% Similarity=0.689 Sum_probs=50.7
Q ss_pred CCCcccccccccCcccEEe--CCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~l--pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
+++..|.||++.+.+++++ ||||.+||.+|+.++......||+||+++...+++|+
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 4667999999999999988 9999989999999998888899999999998888765
No 37
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=4.8e-12 Score=101.66 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=53.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC-----CcceEEEecCHHHHHHHHHHHHHHhhhhhHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAADHFSALR 65 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-----~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~ 65 (329)
+||.||||+|++||+|+++|||+|+++... +++.|+|+|+.++|++|+.+|.+++......+
T Consensus 25 ~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~~~ 91 (104)
T 1we8_A 25 SVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELR 91 (104)
T ss_dssp THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhChHHH
Confidence 579999999999999999999999998643 37899999999999999999999875444333
No 38
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=3.2e-12 Score=100.93 Aligned_cols=56 Identities=29% Similarity=0.359 Sum_probs=51.0
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||||++||+|+++|||+|++|..++ ++.|+|+|.+++|++|+.+|.++++
T Consensus 27 ~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 27 HHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp THHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999996544 5889999999999999999999864
No 39
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=102.19 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=51.1
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC------CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~------~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+|+.+. .+++|+|+|++++|++|+.+|.++++
T Consensus 17 ~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 17 KCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred HcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999998653 26999999999999999999999864
No 40
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.24 E-value=2.8e-12 Score=101.20 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=51.1
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC-----CcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-----~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+++.++ .+|+|+|+|++++|++|+.+|.++++
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 25 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred hcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999998654 37899999999999999999999863
No 41
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=93.90 Aligned_cols=53 Identities=30% Similarity=0.794 Sum_probs=48.0
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~~ 307 (329)
.+...|.||++.+.+++++||||.+||..|+.+. ..||+||+.+...+++|.+
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecC
Confidence 4578999999999999999999999999999975 7899999999998888765
No 42
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=7.3e-12 Score=100.73 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=53.3
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-cceEEEecCHHHHHHHHHHHHHHhhhhhH
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAADHFSA 63 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-ervi~ItG~~e~v~~A~~~I~~i~e~~~~ 63 (329)
+||.||||||++||+|+++|||+|++|.+++ ++.|+|+|..+++++|+.+|.++++....
T Consensus 27 ~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 27 LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHHH
Confidence 5789999999999999999999999997664 45899999999999999999998765443
No 43
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.4e-12 Score=93.05 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
....+...|+||++.+.+++.++|||. ||..|+.+|+.....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 344667899999999999999999999 9999999999888899999998864
No 44
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.23 E-value=1.4e-12 Score=101.88 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcch-hhhhhhhhhh
Q psy3263 83 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPGF-ESHHGQKIVF 152 (329)
Q Consensus 83 ~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~vei-e~~i~d~~~~ 152 (329)
....+.++.||.+++|.||||+|++||+|+++|||+|+++... .++.|+|+| ++++++. ..+|.+++..
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-TQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-EHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 3458889999999999999999999999999999999998642 578999999 8999943 3477666553
No 45
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.22 E-value=3.6e-12 Score=98.65 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=55.1
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-----CCCeEEEECCCCCCcchhh-hhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGNFPEGPGFES-HHGQKI 150 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-----~e~~i~ItG~~pe~veie~-~i~d~~ 150 (329)
..+.++.||.+++|.||||||++||+|+++|||+|.++.+. .++.|+|+| .+++++.+. +|.+++
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDIL 83 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999999998643 467799999 999994443 665543
No 46
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.22 E-value=1.9e-12 Score=94.69 Aligned_cols=56 Identities=25% Similarity=0.632 Sum_probs=50.0
Q ss_pred CCCcccccccccCcccEEe--CCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~l--pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
+....|.||++.+.+++++ ||||.+||.+|+.++++....||+||+++...+++|.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 3457899999999999888 9999989999999998777899999999998888764
No 47
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=3.5e-12 Score=103.07 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=55.8
Q ss_pred EEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC------CCCeEEEECCCCCCcchh-hhhhhhhh
Q psy3263 87 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGNFPEGPGFE-SHHGQKIV 151 (329)
Q Consensus 87 t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~------~e~~i~ItG~~pe~veie-~~i~d~~~ 151 (329)
+.++.||.++||.||||+|++||+|+++|||+|+|..+. .+++|+|+| ++++|+.+ .+|.+++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999998763 468999999 99999444 47777654
No 48
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=94.12 Aligned_cols=57 Identities=28% Similarity=0.686 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCcccccccccCcccEEeC-CCChhccHhhHHhhcCC--CCCCccccccccc
Q psy3263 243 STSPSGSISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDF--DRTCPMCRVPVNQ 300 (329)
Q Consensus 243 p~~~~~~l~~~~~C~IC~e~~~~~~~lp-CgH~~fC~~Cl~~~~~~--~~~CP~Cr~~i~~ 300 (329)
++...+.+.++..|+||++.+.+++.++ |||. ||..|+.+|+.. ...||+||+.+..
T Consensus 5 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 5 SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCCCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3344556788899999999999999999 9999 999999999876 3799999997543
No 49
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=2.5e-12 Score=108.01 Aligned_cols=61 Identities=21% Similarity=0.544 Sum_probs=49.7
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhhhhhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFNQFLFG 312 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~~~~~~~ 312 (329)
++++.|+||++.+.+++++||||. ||..|+..|+.....||+||+++......+..+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 456789999999999999999999 9999999999988999999999865443333333333
No 50
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=2.2e-12 Score=100.25 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=55.8
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC------CCCeEEEECCCCCCcchhh-hhhhhhh
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGNFPEGPGFES-HHGQKIV 151 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~------~e~~i~ItG~~pe~veie~-~i~d~~~ 151 (329)
.+.++.||.+.+|.||||||++||+|+++|||+|++++++ .++.|+|+| ++++++.+. +|.+++.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-SPAATQAAQYLISQRVT 74 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-SHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999752 468899999 899994333 6666654
No 51
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=8.3e-12 Score=99.15 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=55.3
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC----CCCeEEEECCCCCCcchh-hhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KEPVFEVTGNFPEGPGFE-SHHGQKIV 151 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~----~e~~i~ItG~~pe~veie-~~i~d~~~ 151 (329)
..+.++.||.++||.||||||++||+|+++|||+|+||++. .++.|+|+| .+++++.+ .+|.+++.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-YEKNTEAARDAILRIVG 86 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEES-CHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999765 467999999 89888333 35554443
No 52
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.18 E-value=9.9e-12 Score=93.69 Aligned_cols=53 Identities=23% Similarity=0.644 Sum_probs=47.1
Q ss_pred CCCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-------CCCCccccccccc
Q psy3263 247 SGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-------DRTCPMCRVPVNQ 300 (329)
Q Consensus 247 ~~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-------~~~CP~Cr~~i~~ 300 (329)
.+.++++..|+||++.+.+++.++|||. ||..|+.+|+.. ...||+||..+..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456788999999999999999999999 999999999876 6799999998864
No 53
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=94.10 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
+..+....|+||++.+.++++++|||. ||..|+.+|+.....||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccc
Confidence 445677899999999999999999999 999999999987889999999986
No 54
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=4.6e-12 Score=102.27 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=57.0
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC---CCCeEEEECCCCCCcc-hhhhhhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNFPEGPG-FESHHGQKIVFI 153 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~---~e~~i~ItG~~pe~ve-ie~~i~d~~~~~ 153 (329)
..+++|.||.++||.||||+|++||+|+++|+|+|+|++++ .+++|+|+| ++++++ +..+|.+++...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-PPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-SHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-CHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999999999999999999999998654 467899999 899994 444777776643
No 55
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=90.88 Aligned_cols=54 Identities=33% Similarity=0.692 Sum_probs=46.9
Q ss_pred CCCCCCCCcccccccccCccc-------EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 246 PSGSISGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 246 ~~~~l~~~~~C~IC~e~~~~~-------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
..+.+.+...|+||++.+.++ ++++|||. ||..|+.+|+.....||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 344567789999999998877 88999999 9999999998888899999998754
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=91.09 Aligned_cols=55 Identities=25% Similarity=0.643 Sum_probs=48.3
Q ss_pred CCCCCCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCCCCCCcccccccccc
Q psy3263 246 PSGSISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 301 (329)
Q Consensus 246 ~~~~l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~ 301 (329)
..+.+++...|+||++.+.+++.+ +|||. ||..|+.+|+.....||+||+.+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345567889999999999999987 99999 99999999997788999999988653
No 57
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.16 E-value=6.9e-12 Score=100.75 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=56.5
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-----CCCeEEEECCCCCCcc-hhhhhhhhhh
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGNFPEGPG-FESHHGQKIV 151 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-----~e~~i~ItG~~pe~ve-ie~~i~d~~~ 151 (329)
..+.++.||.+++|.||||||++||+|+++|||+|+|++.. .++.|+|+| .+++++ ...+|.+++.
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G-~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG-TQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEc-CHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999998754 478999999 888883 3336666655
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.15 E-value=4.4e-12 Score=95.46 Aligned_cols=53 Identities=32% Similarity=0.884 Sum_probs=47.8
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
++++..|+||++.+.+++++||||.+||..|+.+| ..||+||+.+...+++|+
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 35568999999999999999999999999999988 799999999988877765
No 59
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=93.09 Aligned_cols=54 Identities=22% Similarity=0.589 Sum_probs=47.2
Q ss_pred CCCCCCCCcccccccccCcc----cEEeCCCChhccHhhHHhhcCCC---CCCccccccccc
Q psy3263 246 PSGSISGSRQCYLCNDREVT----HALIPCGHNFFCSECAERTCDFD---RTCPMCRVPVNQ 300 (329)
Q Consensus 246 ~~~~l~~~~~C~IC~e~~~~----~~~lpCgH~~fC~~Cl~~~~~~~---~~CP~Cr~~i~~ 300 (329)
..+.+++...|+||++.+.+ ++.++|||. ||..|+.+|+... ..||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 44567888999999999998 999999999 9999999998764 799999998744
No 60
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.4e-11 Score=91.54 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=47.0
Q ss_pred CCCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC------CCCCccccccccc
Q psy3263 247 SGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF------DRTCPMCRVPVNQ 300 (329)
Q Consensus 247 ~~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~------~~~CP~Cr~~i~~ 300 (329)
.+.+.+...|+||++.+.+++.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456788999999999999999999999 999999998876 6799999998854
No 61
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=2.7e-11 Score=91.37 Aligned_cols=51 Identities=12% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
.+.+++.|+||++.+.+|+.++|||. ||..|+.+|+.. ...||+||+.+..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45678999999999999999999999 999999999987 8899999998854
No 62
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=8.5e-11 Score=87.28 Aligned_cols=52 Identities=29% Similarity=0.689 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC---CCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF---DRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~---~~~CP~Cr~~i~~ 300 (329)
+.+++...|+||++.+.+++.++|||. ||..|+..|++. ...||+||+.+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456778999999999999999999999 999999999873 6799999998754
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=87.76 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
+.+++...|+||++.+.+++.++|||. ||..|+.+|+.. ...||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456778999999999999999999999 999999999954 7899999998754
No 64
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=93.72 Aligned_cols=52 Identities=29% Similarity=0.727 Sum_probs=46.1
Q ss_pred CCCCCCCcccccccccCcccEEeC-CCChhccHhhHHhhcCC--CCCCcccccccc
Q psy3263 247 SGSISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDF--DRTCPMCRVPVN 299 (329)
Q Consensus 247 ~~~l~~~~~C~IC~e~~~~~~~lp-CgH~~fC~~Cl~~~~~~--~~~CP~Cr~~i~ 299 (329)
.+.+.+++.|+||++.+.+|+.++ |||. ||..|+..|+.. ...||+||..+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345678899999999999999999 9999 999999999864 479999999873
No 65
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=2.1e-11 Score=97.99 Aligned_cols=54 Identities=30% Similarity=0.592 Sum_probs=50.0
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC-CCCeEEEECCCCCCc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGNFPEGP 140 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~-~e~~i~ItG~~pe~v 140 (329)
.+.++.||.++||.|||+||++||+|+++|||+|+||.+. +.+.|+|+| .++++
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G-~~e~v 71 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITG-LAANL 71 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEE-CHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEc-CHHHH
Confidence 8899999999999999999999999999999999999765 445899999 88888
No 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.3e-11 Score=90.95 Aligned_cols=52 Identities=23% Similarity=0.685 Sum_probs=46.5
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC------CCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF------DRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~------~~~CP~Cr~~i~~ 300 (329)
+.+.+...|+||++.+.+++.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456778999999999999999999999 999999998765 7899999998864
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.9e-12 Score=93.90 Aligned_cols=52 Identities=33% Similarity=0.871 Sum_probs=46.5
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
++...|+||++.+.+++++||||.+||..|+.++ ..||+||.++...+++|+
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 4567899999999999999999998999999875 789999999988877764
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.08 E-value=1.5e-11 Score=93.97 Aligned_cols=53 Identities=28% Similarity=0.853 Sum_probs=47.7
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhhh
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~~ 307 (329)
+++..|.||++.+.+++++||||.+||..|+.++ ..||+||..+...+++|.+
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence 4567899999999999999999999999999987 5999999999998887754
No 69
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.08 E-value=9.8e-11 Score=88.24 Aligned_cols=55 Identities=20% Similarity=0.567 Sum_probs=45.8
Q ss_pred CCCCCCCCcccccccccCccc---EEeCCCChhccHhhHHhhcCCCCCCcccccccccc
Q psy3263 246 PSGSISGSRQCYLCNDREVTH---ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 301 (329)
Q Consensus 246 ~~~~l~~~~~C~IC~e~~~~~---~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~ 301 (329)
..+.+.+...|+||++.+.++ ..++|+|. ||..|+.+|++....||+||+.+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 344567788999999988644 46799999 99999999998888999999988653
No 70
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.1e-11 Score=87.52 Aligned_cols=53 Identities=30% Similarity=0.917 Sum_probs=46.8
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchh
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 303 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~ 303 (329)
.+.+...|+||++.+.+ +.++|||. ||..|+.+|+.....||+||+.+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 45677899999999999 88999999 9999999999888999999998865443
No 71
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=1.5e-11 Score=97.67 Aligned_cols=51 Identities=27% Similarity=0.650 Sum_probs=45.8
Q ss_pred CCCCCcccccccccCcccEE-eCCCChhccHhhHHhhcCCC-CCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHAL-IPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~-lpCgH~~fC~~Cl~~~~~~~-~~CP~Cr~~i~~ 300 (329)
.++++..|+||++.+.+++. ++|||. ||..|+.+|+... ..||+||..+..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35677899999999999999 999999 9999999999885 799999999843
No 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.2e-10 Score=92.11 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=50.9
Q ss_pred eeeeeecCCChHHHHHHHHh-CCeEEecCCCC-cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKT-NTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~T-ga~I~ip~~~~-ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+++.|||+||.+||+|+++| |++|++|.++. .+.|+|+|+.++|++|+++|.++++
T Consensus 27 ~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 27 LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999 99999997664 5688999999999999999999864
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1.3e-10 Score=93.18 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=49.7
Q ss_pred eeeeeecCCChHHHHHHHH-hCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAK-TNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~-Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
|++.||||+|++||+|+++ ++++|+||. +++.|+|+|+++.|++|+.+|..+++
T Consensus 37 ~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 37 LHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp THHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 6789999999999999998 599999996 56789999999999999999999865
No 74
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.04 E-value=5.7e-11 Score=96.33 Aligned_cols=52 Identities=29% Similarity=0.654 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
..+.+++.|+||++.+.+++.++|||. ||..|+.+|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345677999999999999999999999 999999999987 7899999999864
No 75
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=4.3e-11 Score=88.31 Aligned_cols=50 Identities=36% Similarity=0.774 Sum_probs=44.7
Q ss_pred CCCCcccccccccCccc-------EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~-------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
..++..|+||++.+.++ +.++|||. ||..|+.+|+.....||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 35678999999999887 88999999 9999999999888899999998853
No 76
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=5.4e-11 Score=87.25 Aligned_cols=55 Identities=31% Similarity=0.734 Sum_probs=47.0
Q ss_pred CCCcccccccccCccc-EEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 251 SGSRQCYLCNDREVTH-ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~-~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
+.+..|+||++.+.++ +.++|||. ||..|+.+|+.....||+||+.+...++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 4567999999999986 68899999 9999999998878899999999876554443
No 77
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=1.5e-10 Score=88.26 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCc--ccEEeC--CCChhccHhhHHhhcCC-CCCCcccccccccc
Q psy3263 248 GSISGSRQCYLCNDREV--THALIP--CGHNFFCSECAERTCDF-DRTCPMCRVPVNQA 301 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~--~~~~lp--CgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~~ 301 (329)
..++++..|+||++.+. +++++| |||+ ||..|+.+++.. ...||+||+++...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34678899999999773 455666 9999 999999999865 78999999998764
No 78
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.02 E-value=2e-10 Score=80.63 Aligned_cols=49 Identities=31% Similarity=0.768 Sum_probs=42.9
Q ss_pred CCCCcccccccccCcc---cEEeC-CCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 250 ISGSRQCYLCNDREVT---HALIP-CGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~---~~~lp-CgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
++++..|+||++.+.+ ++.++ |||. ||..|+.+|++....||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999877 67777 9999 999999999988899999998763
No 79
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=8.9e-11 Score=92.66 Aligned_cols=50 Identities=30% Similarity=0.736 Sum_probs=45.4
Q ss_pred CCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
+++...|+||++.+.+++.+ +|||. ||..|+.+|+.....||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 35668999999999999988 99999 9999999999988899999998864
No 80
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=5.5e-11 Score=97.77 Aligned_cols=50 Identities=26% Similarity=0.669 Sum_probs=44.9
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
+++...|+||++.+.+++.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3556899999999999999999999 999999999876 5699999999865
No 81
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.01 E-value=2.4e-10 Score=97.84 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=51.3
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC---cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~---ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+||++|||+|+++...+ ++.|+|+|++++|++|+.+|.++++
T Consensus 101 ~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 101 SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 159 (164)
T ss_dssp THHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999986543 7899999999999999999999865
No 82
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.1e-10 Score=82.03 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=41.6
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcC---CCCCCccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD---FDRTCPMC 294 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~---~~~~CP~C 294 (329)
+.++++..|+||++.+.+++.++|||. ||..|+.+|++ ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 456788999999999999999999999 99999999987 36789998
No 83
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=4.7e-10 Score=89.10 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=47.0
Q ss_pred CCCCCcccccccccCcccEEeCCC-ChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCG-HNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCg-H~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.+.+++.|+||++.+.+|+.++|| |. ||+.|+.+|+.....||+||.++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456789999999999999999999 99 9999999999888899999999864
No 84
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=80.14 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=40.8
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcC---CCCCCccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD---FDRTCPMC 294 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~---~~~~CP~C 294 (329)
+.+++...|+||++.+.+++.++|||. ||..|+.+|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 456778999999999999999999999 99999999954 37899998
No 85
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=1.6e-10 Score=92.77 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=46.0
Q ss_pred CCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
++++..|+||++.+.+++.+ +|||. ||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 46778999999999999987 99999 9999999999888999999999864
No 86
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.98 E-value=7.4e-11 Score=102.81 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=57.1
Q ss_pred CCCceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCC------CCCCeEEEECCCCCCc-chhhhhhhhh
Q psy3263 82 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR------DKEPVFEVTGNFPEGP-GFESHHGQKI 150 (329)
Q Consensus 82 ~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~------~~e~~i~ItG~~pe~v-eie~~i~d~~ 150 (329)
++++.+.++.||.+.+|.||||||++||+|+++|||+|+++.. ..+|+|+|+| .+++| .+..+|.+.+
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~~~ 76 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-TIEALNAVHGFIAEKI 76 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-CHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999864 2578899999 88888 3333555544
No 87
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.98 E-value=2.6e-10 Score=90.95 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=46.9
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.+.+.+.|+||++.+.+|+.++|||+ ||..|+.+|+.....||+|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34678999999999999999999999 9999999999888899999999864
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=1e-10 Score=84.27 Aligned_cols=48 Identities=33% Similarity=0.746 Sum_probs=43.0
Q ss_pred CCcccccccccCccc-------EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 252 GSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~-------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
++..|+||++.+.++ +.++|||. ||..|+.+|+.....||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467999999998876 78999999 9999999999888899999998854
No 89
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.96 E-value=3.5e-10 Score=97.07 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=50.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCC-----cceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGE-----EPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~-----ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
+||.||||+|++||+|+++|||+|+++.++. ++.|+|+|++++|++|+.+|.++++
T Consensus 95 ~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 95 AAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILA 155 (163)
T ss_dssp THHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred heeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999986532 4589999999999999999999865
No 90
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=1.5e-10 Score=91.62 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=56.5
Q ss_pred CCCCceEEEEEecCcccceeecCCCchHHHHHHhc-CceEEcCCCC-CCCeEEEECCCCCCcc-hhhhhhhhh
Q psy3263 81 GVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQT-NTYIVTPSRD-KEPVFEVTGNFPEGPG-FESHHGQKI 150 (329)
Q Consensus 81 ~~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~t-ga~I~ip~~~-~e~~i~ItG~~pe~ve-ie~~i~d~~ 150 (329)
.+....+.++.||.++++.|||+||++||+|+++| ||+|.||.+. ....|+|+| ..+.|+ +..+|.+++
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G-~~~~v~~A~~~I~~iv 83 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG-PSSDVEKAKKQLLHLA 83 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEES-CHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEc-CHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 9999999765 566899999 777772 223555443
No 91
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.9e-10 Score=84.77 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCcccE---EeCCCChhccHhhHHhhcCCCCCCcccccccccch
Q psy3263 249 SISGSRQCYLCNDREVTHA---LIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAM 302 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~---~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~ 302 (329)
.+..+..|.||++.+.++. .++|+|. ||..|+.+|++....||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccc
Confidence 4566789999999986543 4599999 999999999988889999999886543
No 92
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.95 E-value=2.2e-10 Score=88.47 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.+.+.+.|+||++.+.+|+.++|||+ ||..|+.+|+.....||+|+.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34678999999999999999999999 9999999999888899999998864
No 93
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.95 E-value=3.8e-10 Score=97.96 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=49.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCC------CCcceEEEecCHHHHHHHHHHHHHH
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVR------GEEPVFVVTGRKEDVARAKREILSA 57 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~------~~ervi~ItG~~e~v~~A~~~I~~i 57 (329)
+||.||||+|++||+||++|||+|+++.. ..++.|+|+|++++|++|+.+|.++
T Consensus 114 ~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 114 KTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp THHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred HcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 57999999999999999999999999864 2368999999999999999999876
No 94
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=5.2e-10 Score=82.23 Aligned_cols=52 Identities=23% Similarity=0.563 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCc---ccEEeCCCChhccHhhHHhhcCCCCCCcccccccccc
Q psy3263 249 SISGSRQCYLCNDREV---THALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 301 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~---~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~ 301 (329)
.......|+||++.+. .++.++|||. ||..|+.+|+.....||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3456789999988774 4568899999 99999999998888899999988653
No 95
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.94 E-value=3.6e-10 Score=88.17 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=44.0
Q ss_pred CCCCcccccccccCcc---cEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVT---HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~---~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
..++..|+||++.+.. +..+||||. ||..|+..|+.....||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567899999998876 677899999 9999999999988899999998754
No 96
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=2.9e-10 Score=79.70 Aligned_cols=47 Identities=32% Similarity=0.730 Sum_probs=41.5
Q ss_pred CCcccccccccCcc----cEEeCCCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 252 GSRQCYLCNDREVT----HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 252 ~~~~C~IC~e~~~~----~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
++..|+||++.+.+ ++.++|||. ||..|+.+|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998865 678999999 999999999888899999998764
No 97
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=96.00 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=49.8
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCC----CCcceEEEecCHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVR----GEEPVFVVTGRKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~----~~ervi~ItG~~e~v~~A~~~I~~i~ 58 (329)
+||.||||+|++||+||++|||+|+++.+ .+++.|+|+|++++|++|+.+|.+++
T Consensus 99 ~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 99 QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVM 157 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred heeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999852 24799999999999999999998874
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=4.3e-10 Score=84.18 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=43.5
Q ss_pred CCCCcccccccccCccc---EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTH---ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~---~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
..+...|+||++.+... +.++|+|. ||..|+.+|++....||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45678999999988766 67899999 9999999999888899999998753
No 99
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=4.5e-10 Score=95.82 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=45.4
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCcccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQA 301 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~~ 301 (329)
+++.+.|+||++.+.+++.++|||. ||..|+.+|+.. ...||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456899999999999999999999 999999999987 45899999998654
No 100
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.1e-10 Score=81.99 Aligned_cols=48 Identities=23% Similarity=0.652 Sum_probs=40.8
Q ss_pred CCcccccccc-cCccc----EEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 252 GSRQCYLCND-REVTH----ALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 252 ~~~~C~IC~e-~~~~~----~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
++..|+||++ .+.++ ++++|||. ||..|+.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 77776 57899999 999999999665 6789999998854
No 101
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.87 E-value=7.4e-10 Score=90.30 Aligned_cols=52 Identities=21% Similarity=0.526 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
+.+++.+.|+||++.+.+++.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 356778999999999999999999999 999999999887 4599999999865
No 102
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=6.2e-10 Score=95.82 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=45.7
Q ss_pred CCCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
.+.+...|+||++.+.+++.+ +|||. ||..|+..|+.. ...||+||..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456678999999999999987 99999 999999999987 8899999998853
No 103
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=6.9e-10 Score=88.96 Aligned_cols=49 Identities=20% Similarity=0.571 Sum_probs=43.3
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCC---CCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFD---RTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~---~~CP~Cr~~i~~ 300 (329)
.+...|+||++.+.+++.++|||. ||..|+..|+... ..||+||..+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 446789999999999999999999 9999999998763 589999998854
No 104
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=7.4e-10 Score=78.68 Aligned_cols=46 Identities=30% Similarity=0.745 Sum_probs=40.4
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.+.+.|+||++.+.+++.++|||. ||..|+..+ ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEeec
Confidence 456899999999999999999999 999999773 5689999998753
No 105
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.83 E-value=5.5e-10 Score=107.51 Aligned_cols=53 Identities=40% Similarity=0.959 Sum_probs=47.8
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhhh
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~~ 306 (329)
++++..|+||++.+.+++++||||.+||..|+.++ ..||+||.++...+++|+
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 45678999999999999999999999999999988 789999999998887764
No 106
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=3.8e-10 Score=91.87 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=43.0
Q ss_pred CCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
+++.+.|+||++.+.+|+.+ +|||. ||..|+..|+. ..||+||..+.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 45678999999999999998 99999 99999999987 78999999884
No 107
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.82 E-value=1.5e-09 Score=91.97 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=48.7
Q ss_pred eeeeeecCCChHHHHHHHHhCC-eEEecCCCC------cc--eEEEecCHHHHHHHHHHHHHHhhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNT-YIKTPVRGE------EP--VFVVTGRKEDVARAKREILSAADH 60 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga-~I~ip~~~~------er--vi~ItG~~e~v~~A~~~I~~i~e~ 60 (329)
.+|++|||+|++||.+++.||+ +|+++...+ ++ .|+|+|++++|++|+.+|.+.+.+
T Consensus 77 ~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 77 LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999997 999985332 23 489999999999999999998753
No 108
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.79 E-value=2.7e-09 Score=86.01 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=40.1
Q ss_pred CcccccccccCcccE------------------EeCCCChhccHhhHHhhc-----CCCCCCcccccccccc
Q psy3263 253 SRQCYLCNDREVTHA------------------LIPCGHNFFCSECAERTC-----DFDRTCPMCRVPVNQA 301 (329)
Q Consensus 253 ~~~C~IC~e~~~~~~------------------~lpCgH~~fC~~Cl~~~~-----~~~~~CP~Cr~~i~~~ 301 (329)
+..|+||++.+.++. +++|+|. ||..|+..|+ .....||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 469999999986543 7899999 9999999998 4477999999987543
No 109
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=9.2e-10 Score=92.96 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=45.1
Q ss_pred CCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccc
Q psy3263 248 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPV 298 (329)
Q Consensus 248 ~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i 298 (329)
+.+++++.|+||++.+.+|+.++|||. ||..|+.+|+.. ...||+||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 356788999999999999999999999 999999999886 45999999975
No 110
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.78 E-value=1.2e-09 Score=105.81 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=57.0
Q ss_pred CCceEEEEEecCcccceeecCCC--chHHHHHHhcCceEEcCCCC--------CCCeEEEECCCCCCcchhh-hhhhh
Q psy3263 83 PGHVTIEVRVPYKVVGLVVGPKG--ATIKRIQHQTNTYIVTPSRD--------KEPVFEVTGNFPEGPGFES-HHGQK 149 (329)
Q Consensus 83 ~g~~t~~i~VP~~~vG~IIGkgG--~tIk~Iq~~tga~I~ip~~~--------~e~~i~ItG~~pe~veie~-~i~d~ 149 (329)
+..+|+++.||+.+|++|||||| ++|++|+++|||+|+||.++ +...|+|+| .+++||.+. .|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG-~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITG-YFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEE-EHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEc-CHHHHHHHHHHHHhc
Confidence 46799999999999999999999 99999999999999999765 345699999 999994444 66654
No 111
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=2.3e-09 Score=87.80 Aligned_cols=49 Identities=37% Similarity=0.807 Sum_probs=44.8
Q ss_pred CCCcccccccccCccc-------EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~-------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.++..|+||++.+.++ +.++|||. ||..|+.+|++....||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4678999999999888 89999999 9999999999998899999998853
No 112
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=4.6e-09 Score=86.27 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=48.4
Q ss_pred ceeeeeeecCCChHHHHHHHHhCCeEEecCCC-------------CcceEEEe-cCHHHHHHHHHHHHHHhh
Q psy3263 2 FIFVVPSINPFGCKIKALRAKTNTYIKTPVRG-------------EEPVFVVT-GRKEDVARAKREILSAAD 59 (329)
Q Consensus 2 ~~~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-------------~ervi~It-G~~e~v~~A~~~I~~i~e 59 (329)
|.|+|.|||++|.+||+|+++|||+|.|-.++ ++-.|.|+ .+.+++++|+.+|.+++.
T Consensus 27 fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 27 FNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp TCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999996332 22245565 569999999999999864
No 113
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=2.9e-09 Score=103.64 Aligned_cols=54 Identities=26% Similarity=0.706 Sum_probs=47.0
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcC-CCCCCcccccccccchhhh
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD-FDRTCPMCRVPVNQAMRII 305 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~-~~~~CP~Cr~~i~~~~~i~ 305 (329)
+....|+||++.+.+++.+||||. ||..|+..|.. ....||+||+.+.....+.
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 445799999999999999999999 99999999988 5789999999987654443
No 114
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4.7e-09 Score=82.40 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=41.6
Q ss_pred CCCCcccccccccCcccEEeC-CCChhccHhhHHhhcCC------CCCCcc--cccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDF------DRTCPM--CRVP 297 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lp-CgH~~fC~~Cl~~~~~~------~~~CP~--Cr~~ 297 (329)
...++.|+||++.+.+|+.++ |||. ||..|+..|+.. ...||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356789999999999999996 9999 999999999875 358999 9876
No 115
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.73 E-value=3.5e-09 Score=85.79 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=45.3
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
+.++..|+||++.+.+++.++|||. ||..|+.+|+.. ...||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4567899999999999999999999 999999999887 7899999999854
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=6e-09 Score=95.71 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
...+.|+||++.+.+|++++|||+ ||..|+.+|+.. ...||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 467899999999999999999999 999999999876 4459999999854
No 117
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=2e-09 Score=84.25 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=47.0
Q ss_pred eeeeeecCCChHHHHHHHHhCCe-EEecCCCCcceEEEec-CHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTY-IKTPVRGEEPVFVVTG-RKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~-I~ip~~~~ervi~ItG-~~e~v~~A~~~I~~i~e 59 (329)
++|.+||+||.+||+|+++||++ |++. +++..|+|.| ..+++++|+.+|..+.+
T Consensus 25 kIg~vIG~gGk~Ik~I~e~tGv~~IdI~--eddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 25 LMGLAIGTHGSNIQQARKVPGVTAIELD--EDTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp HHHHHHTTTTHHHHHHHTSTTEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred HhhhhcCCCcHHHHHHHHHhCCeEEEEE--cCCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 36889999999999999999998 9995 3457889999 89999999999976643
No 118
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=78.02 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=37.6
Q ss_pred CcccccccccCcc--------------cE-EeCCCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 253 SRQCYLCNDREVT--------------HA-LIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 253 ~~~C~IC~e~~~~--------------~~-~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
+..|.||++.+.+ .+ +.+|+|. |+..|+.+|+.....||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcc
Confidence 4568888877754 33 4469999 999999999999889999999874
No 119
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.65 E-value=1.3e-08 Score=84.98 Aligned_cols=58 Identities=28% Similarity=0.299 Sum_probs=49.2
Q ss_pred ceeeeeeecCCChHHHHHHHHhCCeEEecCCC-------------------CcceEEEec-CHHHHHHHHHHHHHHhh
Q psy3263 2 FIFVVPSINPFGCKIKALRAKTNTYIKTPVRG-------------------EEPVFVVTG-RKEDVARAKREILSAAD 59 (329)
Q Consensus 2 ~~~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~-------------------~ervi~ItG-~~e~v~~A~~~I~~i~e 59 (329)
|+|||.|||.+|.+||+|+++|||+|.|-.++ ++-.|.|++ ..+.+++|+.+|..++.
T Consensus 21 ~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 21 INFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999996422 133567888 68899999999999864
No 120
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=1.6e-08 Score=87.20 Aligned_cols=51 Identities=22% Similarity=0.547 Sum_probs=46.2
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
.+++.+.|+||++.+.+|+.++|||. ||..|+.+|+.. ...||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 46788999999999999999999999 999999999876 5699999998855
No 121
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=1.8e-08 Score=88.39 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 249 ~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
.+.+.+.|+||++.+.+|+.+||||+ ||..|+..|+.. ...||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34567999999999999999999999 999999999976 4479999998864
No 122
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=1.1e-08 Score=79.96 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCCceEEEEEecCcccceeecCCCchHHHHHHhcCce-EEcCCCCCCCeEEEECCCCCCc
Q psy3263 82 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTY-IVTPSRDKEPVFEVTGNFPEGP 140 (329)
Q Consensus 82 ~~g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~-I~ip~~~~e~~i~ItG~~pe~v 140 (329)
+......++.||.+++|.+||+||++||+|+++||++ |.+. +++..|+|.|+..+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~--eddG~V~I~g~~~ea~ 68 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD--EDTGTFRIYGESADAV 68 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE--TTTTEEEEEESSHHHH
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE--cCCCEEEEEECCHHHH
Confidence 3455889999999999999999999999999999998 9994 3458899999666666
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=1.2e-08 Score=83.45 Aligned_cols=49 Identities=37% Similarity=0.807 Sum_probs=44.0
Q ss_pred CCCcccccccccCccc-------EEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~-------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
++...|+||++.+.++ +.++|||. ||..|+.+|++....||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4568999999988876 88999999 9999999999888999999998854
No 124
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.52 E-value=4.7e-08 Score=88.34 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=48.2
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
.+|+||||+|.|||.|++.|||+|.++ ++.|.|.|..++++.|+++|.++++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~----~~~v~i~G~~~~i~~A~~~i~~li~ 190 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVY----GKTVAIIGNPIQIEIAKTAIEKLAR 190 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEE----TTEEEEEECHHHHHHHHHHHHHHHT
T ss_pred hhheeECCCchHHHHHHHHhCceEEEC----CeEEEEEeCHHHHHHHHHHHHHHHc
Confidence 478899999999999999999999997 4678999999999999999999874
No 125
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.51 E-value=2.9e-08 Score=83.62 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=48.1
Q ss_pred ceeeeeeecCCChHHHHHHHHhCCeEEecCCCC--------------------cc-eEEEecC-HH-----HHHHHHHHH
Q psy3263 2 FIFVVPSINPFGCKIKALRAKTNTYIKTPVRGE--------------------EP-VFVVTGR-KE-----DVARAKREI 54 (329)
Q Consensus 2 ~~~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~--------------------er-vi~ItG~-~e-----~v~~A~~~I 54 (329)
|+|||+|||.+|.++|+|+++|||+|.|-.++. |+ -|.|++. .+ .+++|+.+|
T Consensus 16 ~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I 95 (140)
T 2bl5_A 16 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEV 95 (140)
T ss_dssp SCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred CCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHH
Confidence 899999999999999999999999999976552 11 5678874 33 789999999
Q ss_pred HHHhh
Q psy3263 55 LSAAD 59 (329)
Q Consensus 55 ~~i~e 59 (329)
..++.
T Consensus 96 ~~lL~ 100 (140)
T 2bl5_A 96 KKLLV 100 (140)
T ss_dssp HHHSS
T ss_pred HHHCC
Confidence 98863
No 126
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.50 E-value=6.8e-08 Score=77.70 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=39.5
Q ss_pred CCcccccccccCccc------------------EEeCCCChhccHhhHHhhcCCCCCCccccccc
Q psy3263 252 GSRQCYLCNDREVTH------------------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~------------------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i 298 (329)
++..|.||++.+.++ ++++|+|. |+..|+..|+.....||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 356799999887644 46899999 99999999999989999999985
No 127
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=6.2e-08 Score=80.84 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=51.0
Q ss_pred CceEEEEEecCc------ccceeecCCCchHHHHHHhcCceEEcCCCC------------------CCC-eEEEECCCCC
Q psy3263 84 GHVTIEVRVPYK------VVGLVVGPKGATIKRIQHQTNTYIVTPSRD------------------KEP-VFEVTGNFPE 138 (329)
Q Consensus 84 g~~t~~i~VP~~------~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~------------------~e~-~i~ItG~~pe 138 (329)
...+..|.||.+ ++|.|||++|.|||+|+++|||+|.|-.+. +++ .|.|++..++
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 347788999977 899999999999999999999999995421 223 3889996666
Q ss_pred Cc-chhhhhhhhhh
Q psy3263 139 GP-GFESHHGQKIV 151 (329)
Q Consensus 139 ~v-eie~~i~d~~~ 151 (329)
.+ ...++|.+++.
T Consensus 85 ~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 85 NVKKAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66 22225555543
No 128
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.39 E-value=9.4e-08 Score=88.18 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCCCcccccccccCcccEEe-CCCChhccHhhHHhhcCC--CCCCcc--ccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDF--DRTCPM--CRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~--~~~CP~--Cr~~i~~ 300 (329)
...++.|+||++.+.+|+.. .|||+ ||..|+.+++.. ...||+ |++.+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 46678999999999999975 99999 999999999986 468999 9997743
No 129
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.23 E-value=2.9e-07 Score=71.73 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=37.1
Q ss_pred CCcccccccccCcccEEe---CCCChhccHhhHHhhcCC--------CCCCcc--cccc
Q psy3263 252 GSRQCYLCNDREVTHALI---PCGHNFFCSECAERTCDF--------DRTCPM--CRVP 297 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~l---pCgH~~fC~~Cl~~~~~~--------~~~CP~--Cr~~ 297 (329)
+...|.||++.+..+..+ +|||. ||.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999998776533 79999 999999988753 258999 9998
No 130
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.23 E-value=5.4e-07 Score=79.70 Aligned_cols=52 Identities=25% Similarity=0.228 Sum_probs=47.7
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAD 59 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e 59 (329)
++|+||||+|.|||.|++.|||+|.+. ++.+.|.|..++++.|+..|..+++
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~----~~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVG----EYEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEEC----SSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEc----CCEEEEEeChHHHHHHHHHHHHHHc
Confidence 469999999999999999999999998 4578999999999999999998864
No 131
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.18 E-value=2.4e-07 Score=75.77 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=0.4
Q ss_pred CcccccccccCccc------------------EEeCCCChhccHhhHHhhcCCCCCCccccccc
Q psy3263 253 SRQCYLCNDREVTH------------------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298 (329)
Q Consensus 253 ~~~C~IC~e~~~~~------------------~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i 298 (329)
+..|.||++.+.++ +.++|+|. |+..|+.+|+.....||+||+.+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 35899999887653 23599999 99999999999888999999975
No 132
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.6e-06 Score=66.11 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=40.5
Q ss_pred CCCcccccccccC--cccEEeCCC-----ChhccHhhHHhhcCC--CCCCccccccccc
Q psy3263 251 SGSRQCYLCNDRE--VTHALIPCG-----HNFFCSECAERTCDF--DRTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~--~~~~~lpCg-----H~~fC~~Cl~~~~~~--~~~CP~Cr~~i~~ 300 (329)
.+...|.||++.+ .+++++||. |. |...|+.+|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567999999766 356778996 98 999999999887 3699999998743
No 133
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=6.4e-07 Score=73.45 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=48.9
Q ss_pred eEEEEEecC-------cccceeecCCCchHHHHHHhcCceEEcCCCC------------CCC-eEEEECCCCCCc-chhh
Q psy3263 86 VTIEVRVPY-------KVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------------KEP-VFEVTGNFPEGP-GFES 144 (329)
Q Consensus 86 ~t~~i~VP~-------~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~------------~e~-~i~ItG~~pe~v-eie~ 144 (329)
.+..|.||- +++|.|||++|.+||+|+++|||+|.|-.+. +++ .|.|++..++++ ++..
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 455666664 4889999999999999999999999996331 133 488998678887 3333
Q ss_pred hhhhhhh
Q psy3263 145 HHGQKIV 151 (329)
Q Consensus 145 ~i~d~~~ 151 (329)
+|.+++.
T Consensus 92 ~Ie~Ll~ 98 (119)
T 2yqr_A 92 LCENLLQ 98 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666655
No 134
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.04 E-value=2.2e-06 Score=72.09 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=31.9
Q ss_pred EEEEEecC------cccceeecCCCchHHHHHHhcCceEEcCC
Q psy3263 87 TIEVRVPY------KVVGLVVGPKGATIKRIQHQTNTYIVTPS 123 (329)
Q Consensus 87 t~~i~VP~------~~vG~IIGkgG~tIk~Iq~~tga~I~ip~ 123 (329)
+..|.||. +++|.|||++|.|+|+|+++|||+|.|-.
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrG 45 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRG 45 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEES
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEec
Confidence 45666664 56999999999999999999999999964
No 135
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.97 E-value=1.9e-06 Score=62.23 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred CcccccccccCcccEEe-CCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 253 SRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 253 ~~~C~IC~e~~~~~~~l-pCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
.+.|+||++.+.+|+.. +|||. ||+.|+.+|+.....||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 46899999999999999 99999 9999999999886679999998854
No 136
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=83.06 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=45.7
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGP 140 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~v 140 (329)
...++.||.+++|.|||+||++||+|+++|||+|.|- ++-.|.|.|+.++.+
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~ 618 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAM 618 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHH
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHH
Confidence 6789999999999999999999999999999999996 357899999445555
No 137
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.82 E-value=1.7e-05 Score=65.97 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=51.9
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCC--CcceEEEecCHHHHHHHHHHHHHHhhhhhH
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRG--EEPVFVVTGRKEDVARAKREILSAADHFSA 63 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~--~ervi~ItG~~e~v~~A~~~I~~i~e~~~~ 63 (329)
+|+.|+|++|+.|+.|+..|+|.|++-.-+ .+.-|+|.|++..=.+|+.+|.++++.+.+
T Consensus 66 lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 66 LLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp GHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999996433 366789999999999999999999875543
No 138
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.67 E-value=1.2e-05 Score=68.00 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=65.3
Q ss_pred eeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPG 84 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~~g 84 (329)
||..||++|++|+.|+++.|-+|++-...++ ....|..++. +....... .. ..++
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~~s~d--------------~~~fI~naLs--------PA~V~~V~--i~-~~~~ 101 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVEYSSD--------------LERIVKNLFP--------GVKIESIN--VR-ERNG 101 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEECCSS--------------HHHHHHHHST--------TSCEEEEE--EE-EETT
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEEcCCC--------------HHHHHHHhcC--------CceEEEEE--Ee-ecCC
Confidence 6999999999999999999999988644443 1233433321 00000000 00 0135
Q ss_pred ceEEEEEecCcccceeecCCCchHHHHHHhcCceEEc
Q psy3263 85 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVT 121 (329)
Q Consensus 85 ~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~i 121 (329)
.....+.||.+..++.|||+|.+++-..+-||.+|.|
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 5778899999999999999999999999999988765
No 139
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.66 E-value=1.8e-05 Score=62.38 Aligned_cols=49 Identities=33% Similarity=0.662 Sum_probs=38.4
Q ss_pred ccccccccCcccE-EeCCCChhccHhhHHhhcCC-CCCCcccccccccchhh
Q psy3263 255 QCYLCNDREVTHA-LIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQAMRI 304 (329)
Q Consensus 255 ~C~IC~e~~~~~~-~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~~~~i 304 (329)
-|.+|--...... .+||.|. ||.+|+..+.++ ...||.|+.++...-+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 4777765555443 7899998 999999998766 89999999998665444
No 140
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00034 Score=52.39 Aligned_cols=49 Identities=16% Similarity=0.445 Sum_probs=40.2
Q ss_pred CCCcccccccccCcccE-EeCCCChhccHhhHHhhcCCC--CCCccccccccc
Q psy3263 251 SGSRQCYLCNDREVTHA-LIPCGHNFFCSECAERTCDFD--RTCPMCRVPVNQ 300 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~-~lpCgH~~fC~~Cl~~~~~~~--~~CP~Cr~~i~~ 300 (329)
+....|.||++.+.... -..|+|. |-..|+.+|++.. ..||+||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44579999999887544 2389999 9999999999885 899999987643
No 141
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.21 E-value=0.00013 Score=76.10 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=5.3
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGP 140 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~v 140 (329)
...++.||.+++|.|||+||.+||+|+++||++|.+- ++..|.|.+...+.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~ 621 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKI 621 (726)
T ss_dssp C----------------------------------------------CCSCHHHH
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHH
Confidence 5678899999999999999999999999999999885 345678888445555
No 142
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.07 E-value=0.0002 Score=51.36 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=38.7
Q ss_pred CCCcccccccccCcccEEeCCCC-----hhccHhhHHhhcCC--CCCCcccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGH-----NFFCSECAERTCDF--DRTCPMCRVPVN 299 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH-----~~fC~~Cl~~~~~~--~~~CP~Cr~~i~ 299 (329)
++...|.||++...++...||.+ . |-..|+.+|+.. ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35578999998776666789764 4 888999999875 689999998764
No 143
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.83 E-value=0.00028 Score=67.46 Aligned_cols=52 Identities=15% Similarity=0.398 Sum_probs=40.2
Q ss_pred CCCcccccccccCcccE--------EeCCCChhccHhhHHhhcCC-----------CCCCcccccccccchh
Q psy3263 251 SGSRQCYLCNDREVTHA--------LIPCGHNFFCSECAERTCDF-----------DRTCPMCRVPVNQAMR 303 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~--------~lpCgH~~fC~~Cl~~~~~~-----------~~~CP~Cr~~i~~~~~ 303 (329)
+...+|.||++...+.- ...|+|. |-..|+.+|++. ...||.||+++.....
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 45689999998776511 2379999 999999999865 1579999999865433
No 144
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.73 E-value=0.00097 Score=61.02 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=65.3
Q ss_pred eeeeecCCChHHHHH-HHHhCCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKAL-RAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVP 83 (329)
Q Consensus 5 VG~IIGkgG~~Ik~L-r~~Tga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~~ 83 (329)
||..||++|.+|+.| ++-.|-+|++-...+++ ...|...+. +....... . .-+
T Consensus 128 vGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp--------------~~fi~nals--------PA~V~~V~--i--~~~ 181 (251)
T 2asb_A 128 KGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP--------------ARFVANALS--------PAKVVSVS--V--IDQ 181 (251)
T ss_dssp HHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH--------------HHHHHHHTT--------TSCCSEEE--E--EET
T ss_pred HHHHhCCCchHHHHHHHHhCCCeEEEEEecCCH--------------HHHHHhccC--------CcceEEEE--E--EcC
Confidence 688899999999999 77789999986555442 233333311 00000000 0 001
Q ss_pred CceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCC
Q psy3263 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPS 123 (329)
Q Consensus 84 g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~ 123 (329)
...+..+.||.+..++-|||+|.+|+--.+-||-+|.|-.
T Consensus 182 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 182 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 2357889999999999999999999999999999999854
No 145
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.62 E-value=0.00085 Score=55.74 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=43.9
Q ss_pred EEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCC--CCCeEEEECCCCCC
Q psy3263 87 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--KEPVFEVTGNFPEG 139 (329)
Q Consensus 87 t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~--~e~~i~ItG~~pe~ 139 (329)
-..+.|....++.|||++|+.|+.|++.|+|.|++-.-+ ++-.|+|.| .+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG-~~~~ 110 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFG-PPPF 110 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEES-CHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEEC-CHHH
Confidence 367889999999999999999999999999999996544 455599999 5443
No 146
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.55 E-value=0.0015 Score=62.84 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=66.8
Q ss_pred eeeeecCCChHHHHHHHHh-CCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKALRAKT-NTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVP 83 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~T-ga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~~ 83 (329)
||..||++|.+|+.|.++. |-+|++-...+++ ...|..++. +....... . -.+
T Consensus 251 vGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp--------------~~fi~nals--------PA~V~~V~--~--~~~ 304 (366)
T 1k0r_A 251 KGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP--------------ARFVANALS--------PAKVVSVS--V--IDQ 304 (366)
T ss_dssp HHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH--------------HHHHHHHTT--------TSCCSEEE--E--EET
T ss_pred cccccCCcchHHHHHHHHhCCCeEEEEEcCCCH--------------HHHHHHhcC--------CcceeEEE--E--EcC
Confidence 6889999999999999999 8889886444431 233333321 00000000 0 012
Q ss_pred CceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCC
Q psy3263 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR 124 (329)
Q Consensus 84 g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~ 124 (329)
...+..+.||.+..++.|||+|.+++-..+-||.+|.|-..
T Consensus 305 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 305 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 24678999999999999999999999999999999998543
No 147
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.45 E-value=0.0006 Score=71.17 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=11.1
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEec-CHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTG-RKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG-~~e~v~~A~~~I~~i~ 58 (329)
.+|.+||+||.+||+|+++||++|++- ++..+ .|.+ ..+++++|+..|..++
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~--ddG~v-~I~~~~~~~~~~A~~~i~~i~ 632 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN--DDGVV-KVSASDGAKIKAAIDWIKSIT 632 (726)
T ss_dssp -------------------------------------CCSCHHHHHHHHHC-----
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE--CCceE-EEEeCCHHHHHHHHHHHHHHh
Confidence 468899999999999999999999986 33344 5555 5999999999998874
No 148
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.64 E-value=0.0063 Score=58.16 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=65.4
Q ss_pred eeeeecCCChHHHHHHHHh-CCeEEecCCCCcceEEEecCHHHHHHHHHHHHHHhhhhhHhhhcccCCCCCCCCCCCCCC
Q psy3263 5 VVPSINPFGCKIKALRAKT-NTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVP 83 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~T-ga~I~ip~~~~ervi~ItG~~e~v~~A~~~I~~i~e~~~~~~~~~~~~~~~~~~~p~~~~ 83 (329)
||..||.+|.+|+.+.++. |-+|++-...+++. ..|...+. +....... . .-+
T Consensus 247 vGacvg~~G~ri~~i~~el~ge~Idii~~s~d~~--------------~fi~nal~--------Pa~v~~v~--~--~d~ 300 (344)
T 1hh2_P 247 IGACIGEGGSRIAAILKELKGEKLDVLKWSDDPK--------------QLIANALA--------PATVIEVE--I--LDK 300 (344)
T ss_dssp HHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSHH--------------HHHHHHTC--------SSCCSEEE--E--EET
T ss_pred cceeeccCCcEeHHHHHHhCCCeeeEEecCCCHH--------------HHHHHhcC--------ccEEEEEE--E--EcC
Confidence 6889999999999999998 78888764444332 23333210 00000000 0 012
Q ss_pred CceEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCC
Q psy3263 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPS 123 (329)
Q Consensus 84 g~~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~ 123 (329)
+..+..+.||.+..++-|||+|.+++--.+-||-+|.|-+
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 3467899999999999999999999999999999998843
No 149
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.63 E-value=0.0096 Score=46.23 Aligned_cols=58 Identities=22% Similarity=0.657 Sum_probs=46.0
Q ss_pred CCCCCCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccccchhhh
Q psy3263 246 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 305 (329)
Q Consensus 246 ~~~~l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~~~~i~ 305 (329)
+...+.+..-|..|+-..+. ++.|....+|..|+..++.....||+|..++...+++-
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CCccccCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 34456677899999976664 77885444999999999999999999999997766553
No 150
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.94 E-value=0.012 Score=61.60 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGP 140 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~v 140 (329)
...++.||.+++|-+||+||.+|++|.++||+.|.+-. +..|.|.+...+.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~ 611 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKA 611 (723)
T ss_dssp -------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHH
Confidence 56778899999999999999999999999999998753 45566776334443
No 151
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.52 E-value=0.014 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.671 Sum_probs=27.0
Q ss_pred CCccccccccc-CcccEE--eCCCChhccHhhHHhh
Q psy3263 252 GSRQCYLCNDR-EVTHAL--IPCGHNFFCSECAERT 284 (329)
Q Consensus 252 ~~~~C~IC~e~-~~~~~~--lpCgH~~fC~~Cl~~~ 284 (329)
++..|.+|.+. +..++. +.|+|+ ||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 45789999975 667776 899999 999999983
No 152
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.07 E-value=0.013 Score=61.58 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=16.5
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEEC
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG 134 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG 134 (329)
....+.||.+.+|-+||+||.+||+|+++||+.|.+-. +..|.|++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~ 643 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGA 643 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-----------CCCB
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEec
Confidence 44568899999999999999999999999999998863 45666776
No 153
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.47 E-value=0.064 Score=40.42 Aligned_cols=36 Identities=28% Similarity=0.760 Sum_probs=29.7
Q ss_pred CCCcccccccccCcccEEeCC----CChhccHhhHHhhcCC
Q psy3263 251 SGSRQCYLCNDREVTHALIPC----GHNFFCSECAERTCDF 287 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpC----gH~~fC~~Cl~~~~~~ 287 (329)
...+.|.+|.+++.+.-++.| .|. ||..|.+...+.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHHHHh
Confidence 345799999999999988877 688 999999876543
No 154
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.46 E-value=0.14 Score=46.21 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=37.7
Q ss_pred CcccccccccCcccEE-eCCCChhccHhhHHhhcCC--CCCCccccccccc
Q psy3263 253 SRQCYLCNDREVTHAL-IPCGHNFFCSECAERTCDF--DRTCPMCRVPVNQ 300 (329)
Q Consensus 253 ~~~C~IC~e~~~~~~~-lpCgH~~fC~~Cl~~~~~~--~~~CP~Cr~~i~~ 300 (329)
-..|.+|.+....... -.|+|. |-..|+.+|++. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5689999998875543 249998 999999999876 5699999987543
No 155
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=90.57 E-value=0.048 Score=56.96 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEec-CHHHHHHHHHHHHHH
Q psy3263 5 VVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTG-RKEDVARAKREILSA 57 (329)
Q Consensus 5 VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG-~~e~v~~A~~~I~~i 57 (329)
++.+||+||.+||+|.++||+.|++-. + ..+.|.+ ..+..++|++.|..+
T Consensus 571 i~~~ig~gGk~I~~I~~~~G~~IdI~~--d-g~v~I~~~~~~~~~~a~~~i~~i 621 (723)
T 3cdi_A 571 IKDVIGKGGSVIRALTEETGTTIEIED--D-GTVKIAATDGEKAKHAIRRIEEI 621 (723)
T ss_dssp ------------------------------------------------------
T ss_pred hcccccccceeeeeeehhhCceEEecC--C-ccEEEecCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998863 3 3445554 566778888877665
No 156
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=89.51 E-value=0.15 Score=42.74 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=34.2
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcC
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTP 122 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip 122 (329)
..+.+.|+...+|..||++|++|+.|+++.|-+|.+-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 5678899999999999999999999999999999874
No 157
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=83.46 E-value=0.059 Score=56.56 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=18.0
Q ss_pred eeeeeecCCChHHHHHHHHhCCeEEecCCCCcceEEEec-CHHHHHHHHHHHHHHh
Q psy3263 4 FVVPSINPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTG-RKEDVARAKREILSAA 58 (329)
Q Consensus 4 ~VG~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~ervi~ItG-~~e~v~~A~~~I~~i~ 58 (329)
.+|.+||++|.+||+|+++||+.|++-. +..+.|++ ..+..++|++.|..+.
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred HeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999873 34456665 4667777777776653
No 158
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=77.85 E-value=0.8 Score=38.57 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.2
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEE
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIV 120 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ 120 (329)
.++.+.+-.+-.|++|||.|.|++.||--+...++
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 35667777889999999999999999987744443
No 159
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=76.44 E-value=0.76 Score=35.38 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.8
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHh
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQ 114 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~ 114 (329)
..++|.|....-|+|||++|+.|++|++.
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 34677777788899999999999998664
No 160
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.91 E-value=2.5 Score=45.29 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=45.0
Q ss_pred CCCCcccccccccCcccEEeCCCC-hhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGH-NFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH-~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
..+.+.|+|-++.+.|||.+|.|| . |=+.++.+|+.....||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~T-ydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMN-IDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEE-ECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 356799999999999999999984 7 9999999999888899999998864
No 161
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=66.93 E-value=6.8 Score=27.58 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=31.2
Q ss_pred cccccccccCcccE---EeCCCChhccHhhHHhhcCCCCCCccc
Q psy3263 254 RQCYLCNDREVTHA---LIPCGHNFFCSECAERTCDFDRTCPMC 294 (329)
Q Consensus 254 ~~C~IC~e~~~~~~---~lpCgH~~fC~~Cl~~~~~~~~~CP~C 294 (329)
..|..|...+.+.. --.|.+. ||.+|-.=+-+....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 46999998886544 2368888 9999987776667899988
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=65.39 E-value=2.4 Score=40.64 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=33.9
Q ss_pred CCcccccccccCcccE-EeCCCChhccHhhH--HhhcC--CCCCCccccccc
Q psy3263 252 GSRQCYLCNDREVTHA-LIPCGHNFFCSECA--ERTCD--FDRTCPMCRVPV 298 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~-~lpCgH~~fC~~Cl--~~~~~--~~~~CP~Cr~~i 298 (329)
-.+.|++-+..+..|+ ...|.|. -|++-. -.+.. ....||+|.+.+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 3489999999999998 6789998 565543 22211 278999999876
No 163
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=64.60 E-value=1.4 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.3
Q ss_pred eeeecCCChHHHHHHHHh
Q psy3263 6 VPSINPFGCKIKALRAKT 23 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~T 23 (329)
|.+|||+|+.|++|+++-
T Consensus 47 g~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 47 QNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp HHHHCGGGHHHHHHHHHH
T ss_pred ceEEcCCcHHHHHHHHHH
Confidence 678999999999988763
No 164
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=61.36 E-value=30 Score=27.86 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHHHHhCCeEEecCCCCcceEEEecCHHHHHHH
Q psy3263 16 IKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARA 50 (329)
Q Consensus 16 Ik~Lr~~Tga~I~ip~~~~ervi~ItG~~e~v~~A 50 (329)
|++-|.-.|+ +..--++.+-+|.|+|-||.|.+-
T Consensus 24 irqarkfagt-vtytl~gn~l~i~itgvpeqvrke 57 (170)
T 4hhu_A 24 IRQARKFAGT-VTYTLSGNRLVIVITGVPEQVRKE 57 (170)
T ss_dssp HHHHHHTTCE-EEEEEETTEEEEEEESCCHHHHHH
T ss_pred HHHHHhhcce-EEEEEeCCEEEEEEeCCcHHHHHH
Confidence 4444444443 333334667788999999998773
No 165
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=61.27 E-value=1.8 Score=36.42 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=34.4
Q ss_pred eeeecCCChHHHHHHHHhCCeEEecCCCCcce-EEEecCHHHHHHHHHHHHHH
Q psy3263 6 VPSINPFGCKIKALRAKTNTYIKTPVRGEEPV-FVVTGRKEDVARAKREILSA 57 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~erv-i~ItG~~e~v~~A~~~I~~i 57 (329)
|.||||.|.|+++||--++.-++-.. +-++ +-|.|-.+.-++....++.-
T Consensus 45 glLIGK~G~TL~ALQyL~~~~vn~~~--~~~V~LDve~YRerReetL~~lA~~ 95 (152)
T 2pt7_G 45 ALLIGEKGYRYKALSYLLFNWIHPTY--GYSIRLEISTFLQNQEKVMDTQLQS 95 (152)
T ss_dssp TTTTCGGGHHHHHHHHHHHHHHHHHH--SCEEEEEETTHHHHHHHHHHHHHHH
T ss_pred ceEECCCCcchHHHHHHHHHHhhhcC--CceEEEEhHHhHHHHHHHHHHHHHH
Confidence 78999999999999987754443221 1232 35677788887777766553
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=60.16 E-value=3.5 Score=39.40 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCcccccccccCcccE-EeCCCChhccHhhHHhh--cC--CCCCCcccccccc
Q psy3263 251 SGSRQCYLCNDREVTHA-LIPCGHNFFCSECAERT--CD--FDRTCPMCRVPVN 299 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~-~lpCgH~~fC~~Cl~~~--~~--~~~~CP~Cr~~i~ 299 (329)
.-.+.|++-+..+..|+ ...|.|. -|++-..=+ .. ....||+|.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EEeeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34578999999999998 6799998 565543222 11 2789999998763
No 167
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.77 E-value=5.7 Score=30.36 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=34.0
Q ss_pred CcccccccccCccc----EEe---CCCChhccHhhHHhhcCC-CCCCccccccccc
Q psy3263 253 SRQCYLCNDREVTH----ALI---PCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 300 (329)
Q Consensus 253 ~~~C~IC~e~~~~~----~~l---pCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~i~~ 300 (329)
...|.||-+..-.. +++ .|+-- .|+.|..--.+. ...||-|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 46899999864211 233 55555 799999776666 8999999998864
No 168
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=50.65 E-value=5.2 Score=36.05 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCcchhh-hhhhhhhhhhcC
Q psy3263 87 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFES-HHGQKIVFILTS 156 (329)
Q Consensus 87 t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~veie~-~i~d~~~~~~~~ 156 (329)
.++|.|....-|+|||++|+.|++|++.-.-...++... =.|.|. .-.+.++.| .+++++..-++.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~~~~--v~I~i~--eV~~p~l~A~lvAe~IA~qLe~ 111 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGT--IVLYAE--RVQDRGLSAVAQAESMKFKLLN 111 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCCTTS--SEEEEE--CCSCGGGCHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCCCe--EEEEEE--EecCCCcCHHHHHHHHHHHHHc
Confidence 456777778889999999999999876654433332111 112221 122234555 666777755554
No 169
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=50.33 E-value=5.8 Score=36.32 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEecC-cccceeecCCCchHHHHHHhc
Q psy3263 86 VTIEVRVPY-KVVGLVVGPKGATIKRIQHQT 115 (329)
Q Consensus 86 ~t~~i~VP~-~~vG~IIGkgG~tIk~Iq~~t 115 (329)
....+.|.. .+-|.|||++|++||+|....
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~a 270 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRA 270 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHH
Confidence 344666766 456899999999999986543
No 170
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=48.47 E-value=4.5 Score=36.14 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=30.3
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEcC
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTP 122 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip 122 (329)
.++.+.+-.+..|++||+.|.|++.||.-+...++-.
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~ 128 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKS 128 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhc
Confidence 3456667677899999999999999999988776654
No 171
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.32 E-value=5.1 Score=35.42 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=21.9
Q ss_pred EEEEecCcccceeecCCCchHHHHHHh
Q psy3263 88 IEVRVPYKVVGLVVGPKGATIKRIQHQ 114 (329)
Q Consensus 88 ~~i~VP~~~vG~IIGkgG~tIk~Iq~~ 114 (329)
++|.|....-|.|||++|+.|++|++.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456666777899999999999997654
No 172
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=47.54 E-value=3.5 Score=36.86 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=34.8
Q ss_pred eeeecCCChHHHHHHHHhCCeEEecCCCCcce-EEEecCHHHHHHHHHHHHH
Q psy3263 6 VPSINPFGCKIKALRAKTNTYIKTPVRGEEPV-FVVTGRKEDVARAKREILS 56 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tga~I~ip~~~~erv-i~ItG~~e~v~~A~~~I~~ 56 (329)
|.||||.|+++++||.-++.-++-.....-++ +-|.|..+.-++....++.
T Consensus 104 g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~ 155 (225)
T 3gku_A 104 GILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAK 155 (225)
T ss_dssp HHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHH
T ss_pred ceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHH
Confidence 67999999999999999987665542222233 3456777766665555544
No 173
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.33 E-value=5.2 Score=35.76 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceEEc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVT 121 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~i 121 (329)
..++|.|....-|.|||++|+.|++|++.-.-...+
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~ 79 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 79 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC
Confidence 346777888888999999999999987765444333
No 174
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=45.49 E-value=7.3 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.3
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcC
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTN 116 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tg 116 (329)
..++|.|....-|.|||++|+.|++|++.-.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 3467777778889999999999999877643
No 175
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=44.72 E-value=22 Score=25.24 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=29.9
Q ss_pred CcccccccccCcccEEeCCCChhccHhhHHhhcCC----CCCCcccccc
Q psy3263 253 SRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVP 297 (329)
Q Consensus 253 ~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~~ 297 (329)
...|.||.+.-.-..--.|... |-..|+..-+.. ...||.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence 4579999865432112367776 999999755444 6799999764
No 176
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=44.59 E-value=5.7 Score=36.07 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=25.9
Q ss_pred cccceeecCCCchHHHH-HHhcCceEEcCC
Q psy3263 95 KVVGLVVGPKGATIKRI-QHQTNTYIVTPS 123 (329)
Q Consensus 95 ~~vG~IIGkgG~tIk~I-q~~tga~I~ip~ 123 (329)
+-+|.-||++|++|+.| ++..|-+|.|-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 67899999999999999 788899999853
No 177
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=42.81 E-value=4.8 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=21.6
Q ss_pred EEEEecCcccceeecCCCchHHHHHHh
Q psy3263 88 IEVRVPYKVVGLVVGPKGATIKRIQHQ 114 (329)
Q Consensus 88 ~~i~VP~~~vG~IIGkgG~tIk~Iq~~ 114 (329)
++|.|....-|.|||++|+.|++|++.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456666677899999999999988654
No 178
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=42.59 E-value=5.5 Score=36.51 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred eeeecCCChHHHHHHHHh
Q psy3263 6 VPSINPFGCKIKALRAKT 23 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~T 23 (329)
+.||||+|+.||+|..+.
T Consensus 253 ~i~ig~~g~~ik~i~~~a 270 (308)
T 3iev_A 253 PIIIGKKGQRLKEIGKRA 270 (308)
T ss_dssp HHHHCGGGHHHHHHHHHH
T ss_pred eEEEcCCcHHHHHHHHHH
Confidence 458999999999998654
No 179
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=40.24 E-value=5.4 Score=35.80 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=21.8
Q ss_pred EEEEecCcccceeecCCCchHHHHHHh
Q psy3263 88 IEVRVPYKVVGLVVGPKGATIKRIQHQ 114 (329)
Q Consensus 88 ~~i~VP~~~vG~IIGkgG~tIk~Iq~~ 114 (329)
++|.|....-|+|||++|+.|++|++.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456666677899999999999988654
No 180
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=39.04 E-value=8.5 Score=34.66 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEecCcccceeecCCCchHHHHHHhc
Q psy3263 88 IEVRVPYKVVGLVVGPKGATIKRIQHQT 115 (329)
Q Consensus 88 ~~i~VP~~~vG~IIGkgG~tIk~Iq~~t 115 (329)
++|.|-...-|+|||++|+.|++|++.-
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHHH
Confidence 3455556677999999999999987653
No 181
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=38.72 E-value=7.1 Score=34.65 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=36.3
Q ss_pred EEEEecCcccceeecCCCchHHHHHHhcCceEEcCCCCCCCeEEEECCCCCCcchhh-hhhhhhhhhhcC
Q psy3263 88 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEGPGFES-HHGQKIVFILTS 156 (329)
Q Consensus 88 ~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I~ip~~~~e~~i~ItG~~pe~veie~-~i~d~~~~~~~~ 156 (329)
++|.|....-|+|||++|+.|++|++.-.-....+... ..|.|.- -.+.++.| .+++++..-++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l~k~~~~~~~~--v~i~i~e--v~~p~l~A~lvAe~Ia~qLe~ 137 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCVNRK--LNIAITR--IAKPYGDPNILAEFIAGQLKS 137 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHHHHHSCSSCCC--CCCCEEE--CSCTTTSHHHHHHHSTTTTTT
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHHHHHhccCCce--EEEEEEE--ecCCCcCHHHHHHHHHHHHHc
Confidence 44555666679999999999999876644333222111 1122211 11124444 666777766663
No 182
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.09 E-value=8.4 Score=35.94 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=36.1
Q ss_pred CCCcccccccccCcccEEeC----CCC-hhccHhhHHhhcCCCCCCcccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIP----CGH-NFFCSECAERTCDFDRTCPMCRVP 297 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lp----CgH-~~fC~~Cl~~~~~~~~~CP~Cr~~ 297 (329)
.....|+||-....-.++.. =|+ .++|..|-..|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 55679999999887665542 343 238999999997778899999875
No 183
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.28 E-value=8.9 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=14.8
Q ss_pred eeeecCCChHHHHHHHH
Q psy3263 6 VPSINPFGCKIKALRAK 22 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~ 22 (329)
|.+|||+|..|++|+++
T Consensus 52 g~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 52 GYVIGRGGRRIRELTRI 68 (210)
T ss_dssp HHHHCSSSHHHHHHHHH
T ss_pred ceEEcCCchhHHHHHHH
Confidence 67899999999998765
No 184
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.10 E-value=6.6 Score=35.43 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred eEEEEEecCcccceeecCCCchHHHHHHhcCceE
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI 119 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~Iq~~tga~I 119 (329)
..++|.|....-|.|||++|+.|++|++.-.-..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~ 77 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVVQKRF 77 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHh
Confidence 3456777778889999999999999877654333
No 185
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.59 E-value=4.9 Score=33.69 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCcccccccccCc-----ccEEeCCCChhccHhhHHhhcCC-CCCCcccccc
Q psy3263 252 GSRQCYLCNDREV-----THALIPCGHNFFCSECAERTCDF-DRTCPMCRVP 297 (329)
Q Consensus 252 ~~~~C~IC~e~~~-----~~~~lpCgH~~fC~~Cl~~~~~~-~~~CP~Cr~~ 297 (329)
++..|.+|...+. -..-.-|.|. +|..|-...... ...|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 4689999998752 2234588998 999998433222 7889999774
No 186
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.98 E-value=9.2 Score=34.16 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.1
Q ss_pred eeeecCCChHHHHHHHHhC
Q psy3263 6 VPSINPFGCKIKALRAKTN 24 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tg 24 (329)
|.||||+|..|++|+++-.
T Consensus 56 g~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 56 QNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp HHHHCSSSSHHHHHHHHHH
T ss_pred ceEEcCCchhHHHHHHHHH
Confidence 6789999999999887643
No 187
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=35.43 E-value=7.8 Score=35.47 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEecC-cccceeecCCCchHHHHHHh
Q psy3263 89 EVRVPY-KVVGLVVGPKGATIKRIQHQ 114 (329)
Q Consensus 89 ~i~VP~-~~vG~IIGkgG~tIk~Iq~~ 114 (329)
.|.|.. .+-+.|||++|++||+|.+.
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ 259 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQA 259 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHH
Confidence 445554 45589999999999988554
No 188
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=35.23 E-value=10 Score=36.27 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=26.0
Q ss_pred cccceeecCCCchHHHHHHhc-CceEEcCC
Q psy3263 95 KVVGLVVGPKGATIKRIQHQT-NTYIVTPS 123 (329)
Q Consensus 95 ~~vG~IIGkgG~tIk~Iq~~t-ga~I~ip~ 123 (329)
+-||..||++|++|+.|.++. |-+|.|-.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 678999999999999999998 99999853
No 189
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.36 E-value=4.1 Score=33.42 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=32.4
Q ss_pred CCCcccccccccCc-----ccEEeCCCChhccHhhHHhhcCC----CCCCcccccc
Q psy3263 251 SGSRQCYLCNDREV-----THALIPCGHNFFCSECAERTCDF----DRTCPMCRVP 297 (329)
Q Consensus 251 ~~~~~C~IC~e~~~-----~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~~ 297 (329)
.+...|.+|...+. ...-.-|.|. +|..|-...... ...|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcc-cccccCCccCCCCCccceechhhHHH
Confidence 35679999998772 1134578888 999997755221 6788899763
No 190
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=34.19 E-value=11 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.0
Q ss_pred eeeecCCChHHHHHHHH----hCCeEEe
Q psy3263 6 VPSINPFGCKIKALRAK----TNTYIKT 29 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~----Tga~I~i 29 (329)
|.||||+|+.|++|+++ ++..+++
T Consensus 73 g~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 73 GIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred CccccCcchHHHHHHHHHHHHHCCceEE
Confidence 56899999999988764 5554443
No 191
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.09 E-value=32 Score=27.86 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCcccccccccCcccEEeCCCChhccHhhHHhhc-----------CCCCCCccccccc
Q psy3263 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTC-----------DFDRTCPMCRVPV 298 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~-----------~~~~~CP~Cr~~i 298 (329)
.+..|.+|.+--.-..--.|-.. ||.+|+.+.+ .....|++|+..-
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 34579999875432222367766 9999998641 1278999997643
No 192
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.83 E-value=36 Score=28.05 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=32.4
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcC----------C-CCCCcccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD----------F-DRTCPMCRVP 297 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~----------~-~~~CP~Cr~~ 297 (329)
..+..|.+|.+--.-..--.|-.. ||..|+.+.+. . ...||+|+..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345789999976543223377777 99999986442 2 7899999853
No 193
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=32.88 E-value=9.5 Score=34.35 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.6
Q ss_pred eeeecCCChHHHHHHHHhCC
Q psy3263 6 VPSINPFGCKIKALRAKTNT 25 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tga 25 (329)
|.||||+|..|++|+++-.-
T Consensus 56 g~VIGkkG~~I~~L~~~l~k 75 (240)
T 3u5c_D 56 QDVLGENGRRINELTLLVQK 75 (240)
T ss_dssp HHHHTTTTCTHHHHHHHHHH
T ss_pred ceEEcCCchhHHHHHHHHHH
Confidence 67899999999999877543
No 194
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=30.58 E-value=13 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=16.2
Q ss_pred eeeecCCChHHHHHHHHhC
Q psy3263 6 VPSINPFGCKIKALRAKTN 24 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tg 24 (329)
|.||||+|..|++|+++-.
T Consensus 59 g~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 59 QQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp HHHHCSSSHHHHHHHHHHH
T ss_pred ceEECCCchHHHHHHHHHH
Confidence 6789999999999988643
No 195
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=30.46 E-value=14 Score=33.68 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=15.2
Q ss_pred eeeecCCChHHHHHHHHh
Q psy3263 6 VPSINPFGCKIKALRAKT 23 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~T 23 (329)
+.||||+|++||+|..+.
T Consensus 243 ~iiig~~g~~lk~i~~~a 260 (301)
T 1wf3_A 243 AIVIGEGGRKIKEIGQAT 260 (301)
T ss_dssp HHHHCGGGHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHH
Confidence 458999999999998654
No 196
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.42 E-value=28 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCC----CCCCccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVPV 298 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~~i 298 (329)
..+..|.+|.+.-.-..--.|... |-..|+..-+.. ...||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999864321111245554 667777643332 67899997643
No 197
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=30.34 E-value=13 Score=33.24 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.7
Q ss_pred eeeecCCChHHHHHHHH
Q psy3263 6 VPSINPFGCKIKALRAK 22 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~ 22 (329)
|.||||+|+.|++|+++
T Consensus 74 g~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 74 GIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp HHHHCSTTHHHHHHHHH
T ss_pred CccccCcchHHHHHHHH
Confidence 56899999999988865
No 198
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.08 E-value=12 Score=33.73 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.3
Q ss_pred eeeecCCChHHHHHHHHhC
Q psy3263 6 VPSINPFGCKIKALRAKTN 24 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~Tg 24 (329)
|.||||+|..|++|+++-.
T Consensus 56 g~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 56 QNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp HHHHCGGGHHHHHHHHHHH
T ss_pred ceEEcCCchHHHHHHHHHH
Confidence 6789999999999988754
No 199
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.83 E-value=17 Score=32.58 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.2
Q ss_pred eeeecCCChHHHHHHHH
Q psy3263 6 VPSINPFGCKIKALRAK 22 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~ 22 (329)
|.||||+|..|++|+++
T Consensus 74 g~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 74 GVVIGRGGERIRVLREE 90 (239)
T ss_dssp GGTSCSSSSHHHHHHHH
T ss_pred cceecCCchHHHHHHHH
Confidence 67899999999999876
No 200
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.36 E-value=46 Score=31.95 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCcccccccccCcccEEe--CCCChhccHhhHHhhcCC----------CCCCccccccc
Q psy3263 252 GSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDF----------DRTCPMCRVPV 298 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~l--pCgH~~fC~~Cl~~~~~~----------~~~CP~Cr~~i 298 (329)
.+..|.+|-+--.-..-- .|... ||..|+.+..-. ...|-+|...-
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 356899998765322222 67666 999999987632 57899998653
No 201
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.32 E-value=1.4e+02 Score=21.40 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 250 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 250 l~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
......|..|.+.....++..-+.. |-.+| ..|-.|+..+..
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~-~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKY-RHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCE-ECTTT--------CCCSSSCCCTTT
T ss_pred CCcCCCcccCCCEecccEEEECCce-ECccC--------CEecCCCCCCCC
Confidence 3445689999887665444444443 44444 467778777643
No 202
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.73 E-value=62 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.429 Sum_probs=28.5
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCC----CCCCccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRV 296 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~ 296 (329)
..+..|.+|.+.-.-..--.|... |-..|+..-+.. ...||.|..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~-fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRA-YHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCE-EEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChh-hhhhccCCCCCCCCCCceECccccc
Confidence 455789999874311111255554 888898764332 689999965
No 203
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=25.63 E-value=29 Score=29.23 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCcccccccccCcccEEeCCCChhccHhhHHhhcCC----CCCCccccccc
Q psy3263 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVPV 298 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~~i 298 (329)
++..|.+|.+.-.-..--.|... |...|+..-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~-~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKV-FHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcc-cCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999865331112246655 777887554333 57899998753
No 204
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.98 E-value=9.5 Score=29.61 Aligned_cols=43 Identities=26% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 252 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
-+..|+.|...+... =++. +|..|-..... ...||-|.+++..
T Consensus 31 M~~~CP~Cq~eL~~~----g~~~-hC~~C~~~f~~-~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQD----NGHA-RCRSCGEFIEM-KALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEE----TTEE-EETTTCCEEEE-EEECTTTCSBCEE
T ss_pred ccccCccCCCcceec----CCEE-ECccccchhhc-cccCcchhhHHHH
Confidence 348999999765431 1333 58888776433 4789999998744
No 205
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.95 E-value=17 Score=32.15 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=15.4
Q ss_pred eeeecCCChHHHHHHHHh
Q psy3263 6 VPSINPFGCKIKALRAKT 23 (329)
Q Consensus 6 G~IIGkgG~~Ik~Lr~~T 23 (329)
|.||||+|..|++|+++-
T Consensus 82 g~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 82 KLLIENRPQGVEDLKINV 99 (218)
T ss_dssp TTTSCSSSCTTHHHHHHH
T ss_pred CcEecCCcHHHHHHHHHH
Confidence 678999999999988764
No 206
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.64 E-value=29 Score=29.94 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCC----CCCCccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVPV 298 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~----~~~CP~Cr~~i 298 (329)
..+..|.+|.+.-.-..--.|... |...|+..-+.. ...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCc-cCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999864321111246655 778887654333 67899998753
No 207
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.36 E-value=8.6 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=29.2
Q ss_pred CCcccccccccCccc----EEeCCCChhccHhhHHhhcCCCCCCcccccc
Q psy3263 252 GSRQCYLCNDREVTH----ALIPCGHNFFCSECAERTCDFDRTCPMCRVP 297 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~----~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~ 297 (329)
....|..|...+.-. ---.||.. ||..|........+.|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~i-fC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKN-FCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCE-ECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCe-eCHHHhCCCCCCceECHHHHHH
Confidence 346899998877532 13489998 9999987654446778888554
No 208
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.14 E-value=45 Score=25.92 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=32.7
Q ss_pred cccccccccCcc---cEEeCCCChhccHhhHHhhcCCCCCCccccccccc
Q psy3263 254 RQCYLCNDREVT---HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300 (329)
Q Consensus 254 ~~C~IC~e~~~~---~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~~ 300 (329)
+.|..|...+.+ .....=|.. ||..|..+.......|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~-yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMI-LCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEE-ECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCee-ecHHHHHHHcCCCCccccCCCCcCc
Confidence 677778777752 223344555 9999998876544489999999864
No 209
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.13 E-value=1.1e+02 Score=21.52 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCCcccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCcccccccc
Q psy3263 251 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 299 (329)
Q Consensus 251 ~~~~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i~ 299 (329)
.....|..|.+.....++..-+.. |-.+| ..|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~-~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRH-RHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCE-ECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcce-eCcCc--------CeeCCCCCCCC
Confidence 345688888886665444444443 44444 46777777663
No 210
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.96 E-value=1.4e+02 Score=22.47 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=24.2
Q ss_pred CCCCCCCcccccccccCcccEEeCC---CChhccHhhHHhh
Q psy3263 247 SGSISGSRQCYLCNDREVTHALIPC---GHNFFCSECAERT 284 (329)
Q Consensus 247 ~~~l~~~~~C~IC~e~~~~~~~lpC---gH~~fC~~Cl~~~ 284 (329)
.++...+..|.||-.-... .++|| +-. |-..|+++.
T Consensus 9 ~e~~~~D~~C~VC~~~t~~-~l~pCRvC~Rv-fH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAE-SLFPCRVCTRV-FHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSS-CCSSCSSSSSC-CCHHHHHHH
T ss_pred ccCCCCCcccCcccccccc-ceecccccccc-ccHhhcccc
Confidence 3445567899999854433 34554 555 888999996
No 211
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.81 E-value=58 Score=27.32 Aligned_cols=42 Identities=24% Similarity=0.583 Sum_probs=29.6
Q ss_pred CCcccccccccCcccEEeC-----CCChhccHhhHHhhcCC----------CCCCcccccc
Q psy3263 252 GSRQCYLCNDREVTHALIP-----CGHNFFCSECAERTCDF----------DRTCPMCRVP 297 (329)
Q Consensus 252 ~~~~C~IC~e~~~~~~~lp-----CgH~~fC~~Cl~~~~~~----------~~~CP~Cr~~ 297 (329)
.+..|.+|-+-- .++- |-.. ||..|+.+.... ...|-+|...
T Consensus 78 ~~~yC~wC~~Gg---~l~~Cdn~~C~r~-FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGR---EVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCS---EEEECSSTTTCCE-EEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCCC---eEEeeCCCCCCCc-hhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 346899999754 2343 5554 999999887543 5689999754
No 212
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.53 E-value=8 Score=29.01 Aligned_cols=39 Identities=26% Similarity=0.623 Sum_probs=21.3
Q ss_pred cccccccccCcccEEeCCCChhccHhhHHhhcCCCCCCccccccc
Q psy3263 254 RQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298 (329)
Q Consensus 254 ~~C~IC~e~~~~~~~lpCgH~~fC~~Cl~~~~~~~~~CP~Cr~~i 298 (329)
..|+.|...+.... ++. .|..|-..+.... .||-|.+++
T Consensus 3 ~~CP~C~~~l~~~~----~~~-~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNG----DTA-HCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECS----SEE-ECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccCC----Cce-ECccccccCCCcc-cCcchhhHH
Confidence 56777775543211 122 4666655544433 677776665
No 213
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.65 E-value=52 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.6
Q ss_pred eEEEEEecCcccceeecCCCchHHHH-HHhc
Q psy3263 86 VTIEVRVPYKVVGLVVGPKGATIKRI-QHQT 115 (329)
Q Consensus 86 ~t~~i~VP~~~vG~IIGkgG~tIk~I-q~~t 115 (329)
....+.||.+..|.+|| .+|+++ ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 45678999999999999 699995 9989
Done!