RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3263
(329 letters)
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 58.6 bits (142), Expect = 6e-12
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR-DKEPVFEVTGN 135
+ V +P + V+G G ++ ++ +T T I P D ++TG
Sbjct: 10 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 60
Score = 48.9 bits (117), Expect = 2e-08
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAADHFS 62
I G K++ L KT T I+ P + +TG KE + +A+ E+L +
Sbjct: 25 IGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQD 79
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 56.0 bits (135), Expect = 7e-11
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 72 ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPVF 130
AL L P VTIEV VP+ + V+G KG+ I+++ + I V + +
Sbjct: 3 ALEALVP-------VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDII 55
Query: 131 EVTGN 135
+TG
Sbjct: 56 AITGL 60
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 52.8 bits (127), Expect = 6e-10
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPVFEVTGNF 136
+TI + + K VG ++G KG ++K+++ ++ I ++ E + + G
Sbjct: 4 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 55
Score = 39.4 bits (92), Expect = 3e-05
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILS 56
I G +K +R ++ I E + + G + +A I+
Sbjct: 19 IGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIID 67
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 52.1 bits (125), Expect = 9e-10
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR-DKEPVFEVTGN 135
+E+ + +K ++G GA I RI+ Q + P +K + + G+
Sbjct: 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD 55
Score = 43.6 bits (103), Expect = 9e-07
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILS 56
I G I ++ + ++ P E + + G + V +AKRE+L
Sbjct: 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 52.1 bits (125), Expect = 9e-10
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGN 135
+T E +VP +VG ++G G I RIQ ++ I E +TG
Sbjct: 8 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT 60
Score = 39.8 bits (93), Expect = 2e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 4 FVVPS------INPFGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREI 54
+ VP I G +I ++ ++ I+ E ++TG E V AKR +
Sbjct: 12 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL 71
Query: 55 LS 56
Sbjct: 72 DQ 73
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 52.2 bits (125), Expect = 1e-09
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 84 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGN 135
G I+V +P VG+V+G G IK+IQ+ I D E + ++TG
Sbjct: 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP 55
Score = 35.6 bits (82), Expect = 6e-04
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVR---GEEPVFVVTGRKEDVARAKREIL 55
I G IK ++ I+ E + +TG + A I
Sbjct: 18 IGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIIT 67
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 51.5 bits (123), Expect = 2e-09
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQAMRIIFNQF 309
C +C + + + PCGH C+ C + + + CP CR + I+ + F
Sbjct: 26 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF 79
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 51.0 bits (122), Expect = 3e-09
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEV 132
V+ +V + ++V ++G +G I++I + I P V
Sbjct: 10 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCV 56
Score = 41.0 bits (96), Expect = 9e-06
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEP--VFVVTGRKEDVARAKREILSAADHF 61
I G I+ + + I+ P G VTG E+V A IL+ + +
Sbjct: 25 IGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 79
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 49.6 bits (118), Expect = 8e-09
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 83 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP-----VFEVTGNF 136
PG+ E+ +P GLV+G G TIK++Q + +V + +TG+
Sbjct: 5 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 63
Score = 34.9 bits (80), Expect = 0.001
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEP-----VFVVTGRKEDVARAKREILS 56
I G IK L+ + + G + +TG V +AK +L
Sbjct: 23 IGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLE 75
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 49.1 bits (117), Expect = 2e-08
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 26/98 (26%)
Query: 42 GRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVV 101
G E + +A E+ + A+ F V P + ++
Sbjct: 1 GEPEKLGQALTEVYAKANSF------------------------TVSSVAAPSWLHRFII 36
Query: 102 GPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEG 139
G KG + +I Q + + ++ + E
Sbjct: 37 GKKGQNLAKITQQMPKVHIEFTEGEDKI--TLEGPTED 72
Score = 29.0 bits (65), Expect = 0.20
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILS 56
I G + + + + E + G EDV+ A+ +I
Sbjct: 36 IGKKGQNLAKITQQM-PKVHIEFTEGEDKITLEGPTEDVSVAQEQIEG 82
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 48.3 bits (115), Expect = 2e-08
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGN 135
E V ++GL +G G+ I++ + + D +
Sbjct: 8 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGES 57
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 47.6 bits (113), Expect = 4e-08
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIV---TPSRDKEPVFEVTGN 135
+T +V +P + G ++G G IK+I+H++ I ++ + +TG
Sbjct: 4 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 56
Score = 36.4 bits (84), Expect = 3e-04
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAADHFS 62
I G +IK +R ++ IK E + + +TG ++ + A+ + ++ +S
Sbjct: 19 IGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 75
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 47.1 bits (112), Expect = 5e-08
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGNF 136
T E+ +P ++G ++G +GA I I+ + I + +TG+
Sbjct: 2 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA 55
Score = 32.9 bits (75), Expect = 0.006
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 4 FVVPS------INPFGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREI 54
+P+ I G I +R + IK E +TG ++ A+ I
Sbjct: 6 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 65
Query: 55 LS 56
+
Sbjct: 66 NA 67
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 47.1 bits (112), Expect = 8e-08
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KEPVFEVTGNF 136
+ V V K ++G KGA I +I+ + + I P +D + +TG
Sbjct: 10 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYE 64
Score = 39.4 bits (92), Expect = 4e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGE----EPVFVVTGRKEDVARAKREILS 56
I G I +R + + I+ P + + + +TG +++ A+ IL
Sbjct: 25 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILR 76
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 46.4 bits (110), Expect = 1e-07
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 87 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGNF 136
+E+ VP +VG ++G G T+ Q T I + + +TG+
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP 59
Score = 36.0 bits (83), Expect = 6e-04
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 12/63 (19%)
Query: 4 FVVPS------INPFGCKIKALRAKTNTYIKTPVRGE------EPVFVVTGRKEDVARAK 51
VP + G + + T I+ +GE +TG A+
Sbjct: 7 MAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 66
Query: 52 REI 54
I
Sbjct: 67 YLI 69
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 45.9 bits (109), Expect = 2e-07
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 88 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKE 127
I V+V + +G V+GP+G I +T T I + +
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSM 44
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 46.1 bits (109), Expect = 3e-07
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 66 ASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-----V 120
+S SG L+ +P V ++ VP + VG ++G G TI+ I + I
Sbjct: 2 SSGSSGILTENTP-------VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 54
Query: 121 TPSRDKEPVFEVTGN 135
+ + +++G
Sbjct: 55 EGTLLLSRLIKISGT 69
Score = 36.1 bits (83), Expect = 8e-04
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 9 INPFGCKIKALRAKTNTYIK-----TPVRGEEPVFVVTGRKEDVARAKREILSAADHFSA 63
I G I+++ + I + ++G +++VA AK IL
Sbjct: 30 IGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEE 89
Query: 64 LRASRKSGALSPLS 77
LR A P S
Sbjct: 90 LRKRIAHSASGPSS 103
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 44.8 bits (106), Expect = 4e-07
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQ-TNTYIVTPSRDKEPVFEVTGNFPEG 139
+EV +P K+ ++G KG I+ I + +I P V
Sbjct: 10 AEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSD 64
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 43.4 bits (102), Expect = 1e-06
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 255 QCYLCNDR-EVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFN 307
+C +C + +PC H F C C R + TCP+C+VPV + I +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIES 59
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 43.0 bits (101), Expect = 1e-06
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 87 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGN 135
VP GL++G G TIK I Q+ I +F + G
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGT 56
Score = 36.4 bits (84), Expect = 4e-04
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 2 FIFVVPS------INPFGCKIKALRAKTNTYIKTPVRGE------EPVFVVTGRKEDVAR 49
F F+VP+ I G IK++ ++ I+ +F + G + +
Sbjct: 3 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDY 62
Query: 50 AKREIL 55
A++ I
Sbjct: 63 ARQLIE 68
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/50 (28%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 253 SRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQA 301
S C +C C H FC C R CP CR P
Sbjct: 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFPT 71
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 42.2 bits (99), Expect = 2e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298
C C L+PC H CS C E + CP+C+ P
Sbjct: 9 CQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPW 47
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 40.9 bits (96), Expect = 8e-06
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 90 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEG 139
+ + V V+G + + + ++ I T
Sbjct: 5 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFS 51
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 40.5 bits (95), Expect = 1e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 90 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGN 135
V + V V+G KG+ IK ++ + + IV + + V G+
Sbjct: 5 VAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGD 47
Score = 33.6 bits (77), Expect = 0.005
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 9 INPFGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 54
I G IK L+++ + I G+ + V G + V+ A+ I
Sbjct: 16 IGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDRRKVSIAEEAI 58
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 39.5 bits (92), Expect = 2e-05
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 249 SISGSRQCYLC----NDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298
++ +C +C D E L CGH F +EC + TCP+CR+ V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 37.8 bits (87), Expect = 8e-05
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 255 QCYLC----NDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 300
+C LC ++ CG+ D + CP CR P +
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 38.1 bits (88), Expect = 2e-04
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 255 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDR---TCPMCRVPVNQ 300
+C +C + C H FC C + + + CP+C+ + +
Sbjct: 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 36.2 bits (84), Expect = 2e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 86 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI 119
I V++P +G V+GPK I +IQ T I
Sbjct: 3 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEI 36
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 38.2 bits (89), Expect = 3e-04
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 94 YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFE--VTGNFPEGPGFESHHGQKIV 151
+ VG ++GP+G T K+++ +T I+ R K + + P +E + V
Sbjct: 16 FNFVGRILGPRGLTAKQLEAETGCKIMV--RGKGSMRDKKKEEQNRGKPNWEHLNEDLHV 73
Query: 152 FILTSNLYSFFDCRI 166
I + + + ++
Sbjct: 74 LITVEDAQNRAELKL 88
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 36.6 bits (85), Expect = 4e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 90 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIV 120
V + V V+G K + +K ++ +T I
Sbjct: 5 VEISPAKVPRVIGRKMSMLKTLEEKTECKIF 35
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 37.1 bits (86), Expect = 5e-04
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 86 VTIEVRVP------YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGNFPEG 139
V+ +V +P VGL++GP+G T+K I+ + N I+ R K V E +G
Sbjct: 3 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMI--RGKGSVKEGKVGRKDG 60
Query: 140 PGFESHHGQKIVFI 153
+
Sbjct: 61 QMLPGEDEPLHALV 74
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 35.1 bits (81), Expect = 0.002
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 95 KVVGLVVGPKGATIKRIQHQTNTYIV 120
++ G ++G G + I+ T+TYI
Sbjct: 22 RIKGRIIGEGGRARRTIEEMTDTYIN 47
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 34.0 bits (77), Expect = 0.004
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 267 ALIPCGHNFFCSECAERTCDFDRTCPMCRVP 297
A C H F C R + CP+
Sbjct: 53 AWGVCNHAF-HFHCISRWLKTRQVCPLDNRE 82
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 35.1 bits (81), Expect = 0.010
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 15 KIKALRAKTNTYIKTPVRGEEP---VFVVTGR-KEDVARAKREILSAADHFSALRASRKS 70
KIK R+ + + P V V TG ED+ +A AD + +R + +S
Sbjct: 130 KIKNNRSIRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQS 189
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.1 bits (72), Expect = 0.023
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 255 QCYLCNDR-EVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298
+C C + L C H F CS C CP+C P
Sbjct: 24 RCSRCTNILREPVCLGGCEHIF-CSNCVSDC--IGTGCPVCYTPA 65
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 30.9 bits (69), Expect = 0.024
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 254 RQCYLC----NDREVTHALIPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQ 300
+ C C ++ + C C + CP C P+ +
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 30.1 bits (67), Expect = 0.040
Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 2/44 (4%)
Query: 256 CYLCND-REVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 298
C + F E+ P+ P+
Sbjct: 3 CAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPL 45
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.8 bits (66), Expect = 0.053
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 8/53 (15%)
Query: 254 RQCYLC-----NDREVTHALIPCGHNFFCSECAER--TCDFDRTCPMCRVPVN 299
C++C N+R C T + C +C V N
Sbjct: 7 PVCWICNEELGNERFRACGCTGELE-NVHRSCLSTWLTISRNTACQICGVVYN 58
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 31.5 bits (71), Expect = 0.068
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 129 VFEVTGNFPEGPGFESHHGQKIVFILTSNLYSFFDCRIFQRMNHHVFSGSSGC-SSASSS 187
V E TG F + G H +L + +N ++ + S+AS+
Sbjct: 94 VIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNE 153
Query: 188 SSSSAC 193
S
Sbjct: 154 WGYSQR 159
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 30.4 bits (67), Expect = 0.11
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 263 EVTHALIPCGHNFFCSEC-----AERTCDFDRTCPMCRVPVNQ 300
V L C H F C D CP C+ +
Sbjct: 53 MVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 26.4 bits (57), Expect = 1.8
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 256 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIF 306
+ + + P G + + E P+ R P+ Q I
Sbjct: 10 GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 60
>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA
protein {Escherichia coli [TaxId: 562]}
Length = 173
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 292 PMCRVPVNQAMRIIFNQF 309
P+ R V+ AMR++ QF
Sbjct: 154 PLIRKGVDMAMRLMGEQF 171
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 26.1 bits (57), Expect = 3.5
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 249 SISGSRQCYLCNDREVTHALIPCGHNFFCSECA 281
++G+ C C + T G C EC+
Sbjct: 11 RMTGNDVCCDCGAPDPTWLSTNLG-ILTCIECS 42
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 25.6 bits (55), Expect = 6.7
Identities = 7/56 (12%), Positives = 15/56 (26%)
Query: 274 NFFCSECAERTCDFDRTCPMCRVPVNQAMRIIFNQFLFGKLWEPVAMNQNTNQDMN 329
F+ S C + +T + + +I + Q +N
Sbjct: 29 KFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLN 84
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 74
Score = 23.9 bits (51), Expect = 9.2
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 255 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMC 294
C LC+D H L E+ +TC C
Sbjct: 31 TCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.413
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,486
Number of extensions: 57807
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 68
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)