BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3264
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 120/164 (73%), Gaps = 30/164 (18%)
Query: 6 DVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMAD 65
D KPRGRMTAYA+FVQ CREEHKKKHP+E V+FAEFS+KCAERWKTM +KEKKRFHEMA+
Sbjct: 176 DAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAE 235
Query: 66 KDKKRYDTEMQSYTPPAG------------------------------EKRGKIKQDNPE 95
KDK+RY+ EMQ+Y PP G ++R K+K NPE
Sbjct: 236 KDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPE 295
Query: 96 YGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+GVGDIAKELG+KW+DVDP VK KYE MAE+DKARYE+EMT YK
Sbjct: 296 FGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYK 339
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 24/164 (14%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YA+FVQ REEHKKKHPE +V F+EFSKKC+ERWKTMS KEK +F ++A D
Sbjct: 7 KPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLD 66
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM+SY PP GEK R ++K + P +GD+AK
Sbjct: 67 KVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGDVAK 126
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVN 147
+LG+KW ++ K YE+ A + K +YEK++TAY+N+ PV+
Sbjct: 127 KLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVPVS 170
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGV--GDIAKELGKKWADVDPSVKTKYEQM 123
KD ++ +M SY +R + K+ +PE V + +K+ ++W + K K+E +
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 124 AEKDKARYEKEMTAY 138
A+ DK RYE+EM +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YA+FVQ CREEHKKKHP+ +V FAEFS+KC+ERWKTMS KEK +F EMA D
Sbjct: 8 KPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGD 67
Query: 68 KKRYDTEMQSYTPP------------------------AGEKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP E R KIK D+P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W++ K YEQ A K K +YEK++ AY+ +S
Sbjct: 128 KLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAKS 166
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 100/156 (64%), Gaps = 24/156 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 68 KKRYDTEMQSYT------------------PPAG------EKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP+ E R KIK ++P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+LG+ W++ K YEQ A K K +YEK++ AY+
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 100/156 (64%), Gaps = 24/156 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 68 KKRYDTEMQSYT------------------PPAG------EKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP+ E R KIK ++P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+LG+ W++ K YEQ A K K +YEK++ AY+
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 100/156 (64%), Gaps = 24/156 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 68 KKRYDTEMQSYT------------------PPAG------EKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP+ E R KIK ++P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+LG+ W++ K YEQ A K K +YEK++ AY+
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 24/167 (14%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F ++A D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSD 67
Query: 68 KKRYDTEMQSYT------------------PPAG------EKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP+ E R KIK ++P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEA 150
+LG+ W++ K YEQ A K K +YEK++ AY+ + + V ++
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEVGKKG 174
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 100/156 (64%), Gaps = 24/156 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F ++A D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSD 67
Query: 68 KKRYDTEMQSYT------------------PPAG------EKRGKIKQDNPEYGVGDIAK 103
K RYD EM++Y PP+ E R KIK ++P +GD AK
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+LG+ W++ K YEQ A K K +YEK++ AY+
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 101/159 (63%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEK------------------------RGKIKQDNPEYGVGDIAK 103
K RY+ EM++Y PP GE R KIK ++P +GD+AK
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKG 166
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 95/152 (62%), Gaps = 22/152 (14%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F EMA DK RYD
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 73 TEMQSYT----------------PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWA 110
EM+ Y PP+G E R KIK NP +GD+AK+LG+ W
Sbjct: 73 REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN 132
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+++ S K Y A K K +YEK++ YK++
Sbjct: 133 NLNDSEKQPYITKAAKLKEKYEKDVADYKSKG 164
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 94/152 (61%), Gaps = 22/152 (14%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F EMA DK RYD
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 73 TEMQSYT----------------PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWA 110
EM+ Y PP+G E R KIK NP +GD+AK+LG+ W
Sbjct: 73 REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWN 132
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
++ S K Y A K K +YEK++ YK++
Sbjct: 133 NLSDSEKQPYINKAAKLKEKYEKDVADYKSKG 164
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 94/152 (61%), Gaps = 22/152 (14%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F EMA DK RYD
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72
Query: 73 TEMQSYT----------------PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWA 110
EM+ Y PP+G E R KIK NP +GD+AK+LG+ W
Sbjct: 73 REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN 132
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
++ + K Y A K K +YEK++ YK++
Sbjct: 133 NLSDNEKQPYVTKAAKLKEKYEKDVADYKSKG 164
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 90/152 (59%), Gaps = 22/152 (14%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F EMA DK RYD
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 72
Query: 73 TEMQSYTPP----------------------AGEKRGKIKQDNPEYGVGDIAKELGKKWA 110
EM+ Y P E R KIK NP +GD+AK+LG+ W
Sbjct: 73 REMKDYGPAKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN 132
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
++ K Y A K K +YEK++ YK++
Sbjct: 133 NLSDGEKQPYNNKAAKLKEKYEKDVADYKSKG 164
>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog OS=Strongylocentrotus
purpuratus GN=HMG1 PE=2 SV=1
Length = 200
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 89/162 (54%), Gaps = 27/162 (16%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRGRM+AYA+FVQ R EH K HP V FAEFSK C+ RWK + EK K FHE + +D
Sbjct: 10 KPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKSMRD 69
Query: 68 KKRYDTEMQSYTPPAGEK---------------------------RGKIKQDNPEYGVGD 100
K RYD EMQSY PP GEK R IK +P + VGD
Sbjct: 70 KVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPNWSVGD 129
Query: 101 IAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
IAKEL +W + K +++ A KDK RY K M YK ++
Sbjct: 130 IAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKA 171
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 129 bits (323), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 92/152 (60%), Gaps = 23/152 (15%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKK +PE V FAEFSKKC+ERWKTMS KEK +F EMA DK RYD
Sbjct: 13 MSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 71
Query: 73 TEMQSYT----------------PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWA 110
EM+ Y PP+G E R KIK NP +GD+AK+LG+ W
Sbjct: 72 REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN 131
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
++ K Y A K K +YEK++ YK++
Sbjct: 132 NLSDGEKQPYNNKAAKLKEKYEKDVADYKSKG 163
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 21/151 (13%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+AYAFFVQ CREEHKKK+P+ + FAEFSKKC+ERWKTMS+KEK +F+E+A DK YD
Sbjct: 13 MSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYD 72
Query: 73 TEMQSYTPPAGEKR---------------------GKIKQDNPEYGVGDIAKELGKKWAD 111
E++ Y P G K+ K K NP +GD+AK+LG+ W +
Sbjct: 73 QEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKN 132
Query: 112 VDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
++ S K Y A K K +YEK++ YK++
Sbjct: 133 LNDSEKQPYITQAAKLKEKYEKDVAVYKSKG 163
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 24/159 (15%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKH + +V F+EFS KC+ERWKTMS KEK +F +MA D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 68 KKRYDTEMQSYTPPAGEKR------------------------GKIKQDNPEYGVGDIAK 103
K Y+ +M++Y PP GE + KIK ++P +GD+AK
Sbjct: 68 KTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAK 127
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
+LG+ W + K E+ A K K +YEK++ AY+ +
Sbjct: 128 KLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKG 166
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 28/158 (17%)
Query: 10 RGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKK 69
RG+ + Y FFV++C EEHKKK+P ENV E SKKC+E+WKTM + EK+RF+E+A KD +
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAE 105
Query: 70 RYDTE----------------------------MQSYTPPAGEKRGKIKQDNPEYGVGDI 101
RY E + ++ + +KR +I+ +P++ VG +
Sbjct: 106 RYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQV 165
Query: 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
A+ELGK W V K YEQ A+ DK RY EM YK
Sbjct: 166 AQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 203
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 24/131 (18%)
Query: 36 VVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEK---------- 85
V F+EFSKKC+ERWKTMS KEK +F +MA DK RY+ EM++Y PP GE
Sbjct: 1 VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 60
Query: 86 --------------RGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARY 131
R KIK ++P +GD+AK+LG+ W + K YE+ A K K +Y
Sbjct: 61 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 120
Query: 132 EKEMTAYKNRS 142
EK++ AY+ +
Sbjct: 121 EKDIAAYRAKG 131
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 23/161 (14%)
Query: 4 EKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
EKD ++P+ +++Y F+ R + K++ P + F EFS+KC+E+W+++S+ EK ++
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 63 MADKDKKRYDTEMQSYT----------------PPAG------EKRGKIKQDNPEYGVGD 100
+A+ DK RY EM +Y PP+ + +KQ+NP++ V
Sbjct: 63 LAELDKARYQQEMMNYIGKRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQ 122
Query: 101 IAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+AK GK W+ D + K YEQ A +A+Y +E AY+N+
Sbjct: 123 VAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAYRNQ 163
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 28/166 (16%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K +KP+ +++Y F+ R + K++ P + F EFS+KC+E+W+++S+ EK ++
Sbjct: 1 MGKRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 HEMADKDKKRYDTEMQSYT----------------PPAG------EKRGKIKQDNPEYGV 98
+A DK RY EM +Y PP+ + ++K +NP + V
Sbjct: 61 EALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSV 120
Query: 99 GDIAKELGKKWA---DVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+AK GK W+ DVD K YEQ A +A+Y +E++ Y+N+
Sbjct: 121 VQVAKASGKMWSAKTDVD---KQPYEQRAALLRAKYREELSVYRNQ 163
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M KE +KP+ +++Y F+ R + K++ P V F EFS+KC+E+W+++S+ EK ++
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 HEMADKDKKRYDTEMQSYT----------------PPAG------EKRGKIKQDNPEYGV 98
+A DK RY EM +Y PP+ + ++K++NP + V
Sbjct: 61 EALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV 120
Query: 99 GDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
+AK GK W+ K YEQ +A+Y +E+ Y+ + A
Sbjct: 121 VQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNA 166
>sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100 PE=1 SV=3
Length = 879
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 25/145 (17%)
Query: 19 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78
V C EEHKKK+P+ +V F+EF KKC+E WKT+ KEK +F +MA DK Y+ EM++Y
Sbjct: 694 LVDPC-EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTY 752
Query: 79 TPP------------------------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
PP E R KIK ++P + D+ K+L W +
Sbjct: 753 IPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAA 812
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
+ K YE+ A K K +Y+K++ AY+
Sbjct: 813 ADKQFYEKKAAKLKEKYKKDIAAYR 837
>sp|Q9N1Q6|SP100_GORGO Nuclear autoantigen Sp-100 (Fragment) OS=Gorilla gorilla gorilla
GN=SP100 PE=2 SV=1
Length = 225
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 25/149 (16%)
Query: 19 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78
V C EEHKKK+P+ +V F+EF KKC+E WKT+ KEK +F +MA DK Y+ EM++Y
Sbjct: 43 LVDPC-EEHKKKNPDASVKFSEFLKKCSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTY 101
Query: 79 TPP------------------------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
PP E R KIK ++P + D+ K+L W +
Sbjct: 102 IPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAA 161
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYKNRSV 143
+ K YE+ A K K +Y+K++ AY+ + +
Sbjct: 162 ADKQFYEKKAAKLKEKYKKDIAAYRAKGM 190
>sp|Q9N1Q7|SP100_PANTR Nuclear autoantigen Sp-100 (Fragment) OS=Pan troglodytes GN=SP100
PE=2 SV=1
Length = 215
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 25/126 (19%)
Query: 19 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78
V C EEHKKK+P+ +V F+EF KK +E WKT+ KEK +F +MA DK Y+ EM++Y
Sbjct: 49 LVDPC-EEHKKKNPDASVKFSEFLKKRSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTY 107
Query: 79 TPP------------------------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
PP E R KIK ++P + D+ K+L W +
Sbjct: 108 IPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAA 167
Query: 115 SVKTKY 120
S K Y
Sbjct: 168 SDKQFY 173
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 90 KQDNPEYGV--GDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
K+ NP+ V + K+ + W + K K+E MA+ DKA YE+EM Y
Sbjct: 57 KKKNPDASVKFSEFLKKRSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTY 107
>sp|Q9N1Q5|SP100_HYLLA Nuclear autoantigen Sp-100 (Fragment) OS=Hylobates lar GN=SP100
PE=2 SV=1
Length = 242
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Query: 27 HKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPP----- 81
HKKK+P+ +V +EF KKC+E WKT+ KEK +F +MA DK Y+ EM++Y P
Sbjct: 75 HKKKNPDASVNLSEFLKKCSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPSKGEKK 134
Query: 82 -------------------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKY 120
E R KIK ++P + D+ K+L + W + + K Y
Sbjct: 135 KKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAEMWNNTAAADKQFY 192
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 90 KQDNPEYGV--GDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
K+ NP+ V + K+ + W + K K+E MA+ DKA YE+EM Y
Sbjct: 76 KKKNPDASVNLSEFLKKCSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTY 126
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 28/155 (18%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPE-ENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
P+ +++Y FV REE K K+P +N + K W S+ K+ + + A++D
Sbjct: 118 PKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKM---WSDASDDVKEHYRKKAEED 174
Query: 68 KKRYDTEMQSYTPPAGE---KRGKIKQDN---------------------PEYGVGDIAK 103
K R+ E+ Y G+ + GKIK+D+ + + +++K
Sbjct: 175 KARFRREVDEYKRQGGKEYGRGGKIKKDSNAPKRAMTSFMFFSSDFRSKHSDLSIVEMSK 234
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
G W ++ P + YE+MAEKDK RY++EM A
Sbjct: 235 AAGAAWKELGPEERKVYEEMAEKDKERYKREMAAL 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 62 EMADKDKKRYD---TEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKT 118
EM +K KK D + SY ++R ++K NP I + LGK W+D VK
Sbjct: 106 EMTEKPKKPADYPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKE 165
Query: 119 KYEQMAEKDKARYEKEMTAYKNRS 142
Y + AE+DKAR+ +E+ YK +
Sbjct: 166 HYRKKAEEDKARFRREVDEYKRQG 189
>sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IXR1 PE=1
SV=2
Length = 597
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 15/141 (10%)
Query: 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMA 64
K P+ +AY F R E ++ PE V E SK + RWK +++ +KK F+E
Sbjct: 357 KKQGPKRPSSAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYEEF 414
Query: 65 DKDKKRYDTEMQSYTP------PAG-------EKRGKIKQDNPEYGVGDIAKELGKKWAD 111
+ ++Y +Y P+G E R + ++NP+ G+ +I K +G++W +
Sbjct: 415 RTNWEKYRVVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRE 474
Query: 112 VDPSVKTKYEQMAEKDKARYE 132
+DP+ K +Y + +K +E
Sbjct: 475 LDPAKKAEYTETYKKRLKEWE 495
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEM 63
EK + P+ + F Q R K++P++ ++ E +K ERW+ + +K + E
Sbjct: 429 EKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGLI--EITKIIGERWRELDPAKKAEYTET 486
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRG 87
K K +++ P G G
Sbjct: 487 YKKRLKEWESCYPDENDPNGNPTG 510
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=nhp-6 PE=3 SV=1
Length = 103
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF RE ++++P V F + K ERWK +S+K++ + A DK
Sbjct: 26 PKRGLSAYMFFANEQRENVREENP--GVSFGQVGKILGERWKALSDKQRAPYEAKAAADK 83
Query: 69 KRYDTEMQSYTPPAGE 84
KRY+ E Q+Y A E
Sbjct: 84 KRYEDEKQAYNAEADE 99
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAK 103
K A + KT + EK+R A KD + +Y A E+R ++++NP G + K
Sbjct: 3 KAAAKSKTTGKVEKRR----AKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGK 58
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
LG++W + + YE A DK RYE E AY N EADEE+
Sbjct: 59 ILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY--------NAEADEEE 101
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=nhp6 PE=3 SV=1
Length = 104
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF R++ ++++P + F + K ERWK +S+ E++ + E A DK
Sbjct: 25 PKRGLSAYMFFANENRDKVREENP--GISFGQVGKMLGERWKALSDSERRPYEEKAAADK 82
Query: 69 KRYDTEMQSYT 79
KRY+ E SY
Sbjct: 83 KRYEDEKASYN 93
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y A E R K++++NP G + K LG++W + S + YE+ A DK RYE E
Sbjct: 29 LSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDE 88
Query: 135 MTAY 138
+Y
Sbjct: 89 KASY 92
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF RE ++++P + F + K ERWK ++EK++ + A DK
Sbjct: 24 PKRGLSAYMFFANEQRENVREENP--GISFGQVGKLLGERWKALNEKQRAPYEAKAAADK 81
Query: 69 KRYDTEMQSYT 79
KRY+ E Q+Y
Sbjct: 82 KRYEDEKQAYN 92
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y A E+R ++++NP G + K LG++W ++ + YE A DK RYE E
Sbjct: 28 LSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDE 87
Query: 135 MTAY 138
AY
Sbjct: 88 KQAY 91
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF R++ ++++P + F + K E+WK++S+KE+K + + A DK
Sbjct: 27 PKRGLSAYMFFANDNRDKVREENP--GISFGQVGKMLGEKWKSLSDKERKPYEDKAAADK 84
Query: 69 KRYDTEMQSY 78
KRY+ E +Y
Sbjct: 85 KRYEDEKAAY 94
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y A + R K++++NP G + K LG+KW + + YE A DK RYE E
Sbjct: 31 LSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDE 90
Query: 135 MTAYK 139
AYK
Sbjct: 91 KAAYK 95
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF R+ + +P + F + K E+WKT+++ EK + E A DK
Sbjct: 25 PKRALSAYMFFANDNRDAIRADNP--GIAFGQVGKALGEKWKTLTDAEKVPYEEKATADK 82
Query: 69 KRYDTEMQSYTPPAGE 84
KRY+ E +Y A E
Sbjct: 83 KRYEDEKAAYKANAAE 98
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y A + R I+ DNP G + K LG+KW + + K YE+ A DK RYE E
Sbjct: 29 LSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDE 88
Query: 135 MTAYKNRSV 143
AYK +
Sbjct: 89 KAAYKANAA 97
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 85 KRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
+R +K+ NP D+ + LG+KW ++ K YE A+ DK RY+ E++ YKN
Sbjct: 572 ERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQ-- 629
Query: 145 PVNEEADEEDD 155
P+N ++ E D
Sbjct: 630 PMNVDSGNESD 640
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+ + FF Q+ R+ KK+HP + F E K ++W+ MS +K+ + A DK+RY
Sbjct: 566 MSGFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYK 623
Query: 73 TEMQSYTPP 81
E+ Y P
Sbjct: 624 DEISDYKNP 632
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 85 KRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
+R IK+++P G++ K LG KW + K YE A+ DK RY+ E++ YKN
Sbjct: 576 ERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ-- 633
Query: 145 PVNEEADEEDD 155
P+N ++ + D
Sbjct: 634 PMNVDSGNDSD 644
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ +A+ F+ RE++KK HP N A K C E WK++SE+EK + + A K
Sbjct: 44 KPKRPPSAFFVFMADFREQYKKDHPN-NKSVAAVGKACGEEWKSLSEEEKAPYVDRALKK 102
Query: 68 KKRYDTEMQSYT 79
K+ Y+ +Q+Y
Sbjct: 103 KEEYEITLQAYN 114
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 85 KRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
+RG +K NP+ +IAK+LG+ W + K Y Q A+ DK RYEKE Y R A
Sbjct: 571 ERGNMKSSNPDLPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVY--RGEA 628
Query: 145 PVNEEADEEDD 155
V+ ++ E D
Sbjct: 629 TVDVDSGNESD 639
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
MT + +F R K +P+ + E +KK E W+ MS +EK+ + + A DKKRY+
Sbjct: 561 MTPFMYFSMAERGNMKSSNPD--LPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYE 618
Query: 73 TEMQSY 78
E Y
Sbjct: 619 KESAVY 624
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NHP6 PE=3 SV=1
Length = 92
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y A E R ++ +NP G + K LG+KW + P K YE A+ DK RYEKE
Sbjct: 23 LSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKE 82
Query: 135 MTAYKNRSVA 144
Y ++ A
Sbjct: 83 KAEYAKKNAA 92
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF R+ + ++P + F + K E+WK ++ ++K + AD DK
Sbjct: 19 PKRSLSAYMFFANENRDIVRAENP--GISFGQVGKLLGEKWKALTPEDKIPYENKADTDK 76
Query: 69 KRYDTEMQSYT 79
KRY+ E Y
Sbjct: 77 KRYEKEKAEYA 87
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ ++AY FFVQ RE K ++PE F + K +W+ M+E EKK + A D
Sbjct: 27 KPKRALSAYMFFVQDYRERIKTENPE--ATFGDVGKLLGIKWREMNENEKKPYEAKAKAD 84
Query: 68 KKRYDTEMQSY 78
K+R D E Y
Sbjct: 85 KERADRENADY 95
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 86 RGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
R +IK +NPE GD+ K LG KW +++ + K YE A+ DK R ++E Y
Sbjct: 43 RERIKTENPEATFGDVGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ ++AY FFVQ RE K ++PE F + K +W+ M+E EKK + A D
Sbjct: 27 KPKRALSAYMFFVQDYRERIKTENPE--ATFGDVGKLLGIKWREMNENEKKPYEAKAKAD 84
Query: 68 KKRYDTEMQSY 78
K+R D E Y
Sbjct: 85 KERADRENADY 95
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 86 RGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
R +IK +NPE GD+ K LG KW +++ + K YE A+ DK R ++E Y
Sbjct: 43 RERIKTENPEATFGDVGKLLGIKWREMNENEKKPYEAKAKADKERADRENADY 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,858,757
Number of Sequences: 539616
Number of extensions: 2707194
Number of successful extensions: 11521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 10189
Number of HSP's gapped (non-prelim): 1173
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)