Query psy3264
Match_columns 156
No_of_seqs 141 out of 1679
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:36:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrq_A High mobility group pro 100.0 4.2E-38 1.5E-42 228.6 14.4 142 1-142 8-173 (173)
2 2gzk_A Sex-determining region 100.0 1.1E-33 3.6E-38 202.9 14.5 135 5-141 1-159 (159)
3 3tmm_A Transcription factor A, 100.0 2.8E-33 9.5E-38 212.4 8.3 136 3-144 36-216 (238)
4 3tq6_A Transcription factor A, 100.0 7.2E-33 2.5E-37 207.2 10.0 135 5-145 6-185 (214)
5 2eqz_A High mobility group pro 99.9 1.6E-25 5.3E-30 144.9 8.2 79 1-79 8-86 (86)
6 1aab_A High mobility group pro 99.9 1.5E-25 5.1E-30 144.1 5.5 81 2-82 1-81 (83)
7 2crj_A SWI/SNF-related matrix- 99.9 7.4E-24 2.5E-28 138.7 6.7 77 2-80 1-77 (92)
8 1hme_A High mobility group pro 99.9 4.6E-24 1.6E-28 135.2 5.3 76 3-80 1-76 (77)
9 2cs1_A PMS1 protein homolog 1; 99.9 2.6E-23 8.7E-28 136.1 8.3 79 2-82 1-79 (92)
10 1wgf_A Upstream binding factor 99.9 4.1E-23 1.4E-27 134.6 8.6 74 3-78 15-88 (90)
11 1k99_A Upstream binding factor 99.9 1.6E-23 5.5E-28 138.8 6.0 79 3-83 5-83 (99)
12 1wz6_A HMG-box transcription f 99.9 1.1E-22 3.8E-27 130.3 9.3 77 2-80 1-77 (82)
13 1ckt_A High mobility group 1 p 99.9 2.7E-23 9.4E-28 129.6 6.1 71 8-78 1-71 (71)
14 1hry_A Human SRY; DNA, DNA-bin 99.9 7.5E-23 2.6E-27 129.3 8.0 73 5-79 1-73 (76)
15 2e6o_A HMG box-containing prot 99.9 8.2E-23 2.8E-27 132.4 8.4 76 2-79 11-86 (87)
16 2co9_A Thymus high mobility gr 99.9 6.6E-23 2.3E-27 136.5 7.6 77 2-80 11-87 (102)
17 1j46_A SRY, sex-determining re 99.9 4.6E-22 1.6E-26 128.3 8.8 74 5-80 1-74 (85)
18 1wxl_A Single-strand recogniti 99.9 5.2E-22 1.8E-26 124.5 7.8 71 6-80 1-71 (73)
19 1cg7_A Protein (NON histone pr 99.9 6.3E-23 2.2E-27 134.5 2.2 75 3-79 15-89 (93)
20 4euw_A Transcription factor SO 99.9 1.3E-21 4.3E-26 131.2 8.6 77 2-80 23-99 (106)
21 4a3n_A Transcription factor SO 99.9 1E-21 3.5E-26 122.3 7.2 70 7-78 1-70 (71)
22 3nm9_A HMG-D, high mobility gr 99.9 3.5E-22 1.2E-26 125.3 5.0 70 6-79 1-70 (73)
23 3f27_D Transcription factor SO 99.9 1.6E-21 5.4E-26 125.1 7.7 74 5-80 3-76 (83)
24 1gt0_D Transcription factor SO 99.9 1.9E-21 6.4E-26 124.0 8.0 72 7-80 1-72 (80)
25 2lhj_A High mobility group pro 99.9 1.8E-23 6.2E-28 138.1 -1.7 78 2-79 16-93 (97)
26 2lef_A LEF-1 HMG, protein (lym 99.8 5.5E-21 1.9E-25 123.4 8.5 71 7-79 1-71 (86)
27 2d7l_A WD repeat and HMG-box D 99.8 6.8E-21 2.3E-25 121.5 8.2 64 4-68 1-64 (81)
28 3u2b_C Transcription factor SO 99.8 5.3E-21 1.8E-25 121.5 7.6 72 7-80 1-72 (79)
29 1l8y_A Upstream binding factor 99.8 3.9E-21 1.3E-25 124.4 6.7 74 7-83 3-76 (91)
30 3fgh_A Transcription factor A, 99.8 2.2E-21 7.5E-26 119.7 5.1 67 7-79 1-67 (67)
31 1i11_A Transcription factor SO 99.8 4E-21 1.4E-25 122.8 6.3 73 6-80 2-74 (81)
32 2gzk_A Sex-determining region 99.8 1.8E-20 6.2E-25 133.9 7.3 75 3-79 83-157 (159)
33 1v64_A Nucleolar transcription 99.8 3.2E-20 1.1E-24 124.6 5.5 74 3-82 11-85 (108)
34 2cto_A Novel protein; high mob 99.8 6.8E-20 2.3E-24 119.5 5.9 72 2-77 4-78 (93)
35 2yrq_A High mobility group pro 99.8 6.9E-20 2.3E-24 132.6 6.0 75 3-79 96-170 (173)
36 1v63_A Nucleolar transcription 99.8 3.1E-19 1.1E-23 118.5 6.2 75 4-82 4-78 (101)
37 2yuk_A Myeloid/lymphoid or mix 99.7 6.4E-20 2.2E-24 118.7 -0.5 69 3-75 17-85 (90)
38 3tq6_A Transcription factor A, 99.7 5.6E-18 1.9E-22 126.4 0.6 71 4-80 110-180 (214)
39 3tmm_A Transcription factor A, 99.6 9.9E-18 3.4E-22 126.9 -1.5 71 4-80 142-212 (238)
40 2co9_A Thymus high mobility gr 99.6 2.1E-16 7.1E-21 105.0 4.0 84 68-151 15-98 (102)
41 2cs1_A PMS1 protein homolog 1; 99.6 1.8E-16 6.1E-21 103.4 2.5 76 71-146 8-83 (92)
42 1k99_A Upstream binding factor 99.6 2.7E-16 9.2E-21 103.9 1.7 77 69-145 9-85 (99)
43 3nm9_A HMG-D, high mobility gr 99.6 3.1E-16 1.1E-20 98.0 1.7 69 72-142 5-73 (73)
44 2crj_A SWI/SNF-related matrix- 99.6 7.2E-16 2.5E-20 100.5 2.8 75 70-144 7-81 (92)
45 1hme_A High mobility group pro 99.6 2.1E-16 7.2E-21 99.7 -0.0 72 70-141 6-77 (77)
46 1ckt_A High mobility group 1 p 99.6 3.4E-16 1.1E-20 97.2 0.1 67 72-138 3-71 (71)
47 2eqz_A High mobility group pro 99.5 8.3E-16 2.8E-20 99.0 1.7 71 69-139 14-86 (86)
48 1cg7_A Protein (NON histone pr 99.5 4.6E-16 1.6E-20 101.6 0.1 73 70-142 20-92 (93)
49 4a3n_A Transcription factor SO 99.5 4.4E-16 1.5E-20 96.6 -0.2 68 72-139 4-71 (71)
50 1hry_A Human SRY; DNA, DNA-bin 99.5 4.9E-16 1.7E-20 97.7 -0.2 71 71-141 5-75 (76)
51 2lef_A LEF-1 HMG, protein (lym 99.5 9.4E-16 3.2E-20 98.7 0.8 73 72-144 4-76 (86)
52 1gt0_D Transcription factor SO 99.5 1.2E-15 4.1E-20 96.9 1.3 72 72-143 4-75 (80)
53 1l8y_A Upstream binding factor 99.5 1.1E-15 3.8E-20 98.7 1.1 71 73-144 7-77 (91)
54 1aab_A High mobility group pro 99.5 7.1E-16 2.4E-20 98.6 0.1 74 69-142 6-81 (83)
55 2lhj_A High mobility group pro 99.5 1.5E-15 5E-20 99.9 1.5 75 68-142 20-96 (97)
56 1j46_A SRY, sex-determining re 99.5 1.6E-15 5.4E-20 97.4 0.9 72 72-143 6-77 (85)
57 3u2b_C Transcription factor SO 99.5 1.5E-15 5.2E-20 96.1 -0.4 72 72-143 4-75 (79)
58 3f27_D Transcription factor SO 99.5 1.7E-15 5.9E-20 96.8 -0.4 72 71-142 7-78 (83)
59 2e6o_A HMG box-containing prot 99.5 1.6E-15 5.4E-20 97.9 -0.6 71 69-139 16-86 (87)
60 1wz6_A HMG-box transcription f 99.5 7.1E-16 2.4E-20 98.4 -2.5 73 70-142 7-79 (82)
61 1wxl_A Single-strand recogniti 99.5 2.1E-15 7.3E-20 94.1 -0.6 68 72-141 5-72 (73)
62 1i11_A Transcription factor SO 99.5 2.1E-15 7.3E-20 95.9 -1.3 72 71-142 5-76 (81)
63 1v63_A Nucleolar transcription 99.5 3.4E-14 1.2E-18 94.0 4.3 72 72-145 10-81 (101)
64 4euw_A Transcription factor SO 99.5 4.6E-15 1.6E-19 99.1 -0.0 78 65-142 24-101 (106)
65 3fgh_A Transcription factor A, 99.4 1.6E-14 5.5E-19 88.6 1.5 63 72-138 4-66 (67)
66 1v64_A Nucleolar transcription 99.4 8.3E-14 2.8E-18 93.2 2.9 69 72-144 19-87 (108)
67 1wgf_A Upstream binding factor 99.4 8.5E-15 2.9E-19 95.0 -3.0 67 70-136 20-86 (90)
68 2cto_A Novel protein; high mob 99.2 8.5E-13 2.9E-17 85.8 -0.1 64 70-135 10-76 (93)
69 2d7l_A WD repeat and HMG-box D 99.2 1.1E-12 3.7E-17 83.4 -1.4 57 71-127 6-63 (81)
70 2yuk_A Myeloid/lymphoid or mix 99.2 5.8E-12 2E-16 81.2 1.3 68 63-134 15-84 (90)
71 2qgu_A Probable signal peptide 75.2 2.5 8.4E-05 30.7 3.4 49 93-141 69-119 (211)
72 2qgu_A Probable signal peptide 57.7 4.7 0.00016 29.2 1.8 37 43-79 80-117 (211)
73 3fxb_A Trap dicarboxylate tran 52.4 6 0.00021 30.3 1.8 21 47-67 232-252 (326)
74 3mhp_C TIC62_peptide, ferredox 39.3 2.9 0.0001 19.7 -1.2 11 9-19 2-12 (26)
75 2och_A Hypothetical protein DN 35.4 51 0.0017 18.9 3.7 37 23-59 29-65 (73)
76 2o37_A Protein SIS1; HSP40, J- 34.9 55 0.0019 19.8 4.0 41 22-62 28-68 (92)
77 2w9y_A CE-FAR-7, fatty acid/re 33.9 70 0.0024 21.6 4.5 80 23-119 51-130 (140)
78 3o39_A Periplasmic protein rel 32.5 61 0.0021 20.7 3.9 26 101-126 80-105 (108)
79 2wme_A BADH, betaine aldehyde 26.5 89 0.003 25.3 4.9 50 90-139 35-90 (490)
80 2vpn_A Periplasmic substrate b 26.0 52 0.0018 24.6 3.2 21 46-66 217-237 (316)
81 4djc_B Sodium channel protein 25.8 14 0.00049 18.7 -0.0 18 2-19 15-33 (35)
82 3itf_A Periplasmic adaptor pro 25.6 87 0.003 21.1 3.9 72 51-129 45-136 (145)
83 3nm8_A Tyrosinase; TYPE3 coppe 25.6 58 0.002 24.8 3.4 24 106-129 8-31 (303)
84 2yua_A Williams-beuren syndrom 25.6 1.2E+02 0.0041 18.5 4.8 41 22-62 37-80 (99)
85 1o20_A Gamma-glutamyl phosphat 24.7 1.3E+02 0.0043 23.8 5.4 37 102-138 23-59 (427)
86 1ayz_A UBC2, ubiquitin-conjuga 24.4 13 0.00045 25.8 -0.4 18 116-133 133-150 (169)
87 4esu_A Ryanodine receptor 1; p 22.8 2E+02 0.0068 20.6 5.6 41 15-67 152-196 (210)
88 3ifg_A Succinate-semialdehyde 22.5 1.4E+02 0.0046 24.1 5.2 37 103-139 60-96 (484)
89 2w8n_A Succinate-semialdehyde 22.2 1.4E+02 0.0049 23.9 5.3 37 103-139 58-94 (487)
90 4dng_A Uncharacterized aldehyd 22.2 1.5E+02 0.005 23.8 5.4 37 102-138 53-89 (485)
91 3ty7_A Putative aldehyde dehyd 22.0 1.4E+02 0.0048 23.9 5.2 37 103-139 55-91 (478)
92 4h7n_A Aldehyde dehydrogenase; 22.0 77 0.0026 25.4 3.6 49 91-139 20-74 (474)
93 1l6x_B Minimized B-domain of p 22.0 60 0.0021 16.3 1.9 16 110-125 16-31 (34)
94 1vlu_A Gamma-glutamyl phosphat 21.9 1.5E+02 0.0051 23.8 5.3 38 102-139 23-60 (468)
95 4f3x_A Putative aldehyde dehyd 21.7 1.5E+02 0.0052 23.9 5.4 48 92-139 55-108 (498)
96 2o2p_A Formyltetrahydrofolate 21.7 1.5E+02 0.0051 24.1 5.3 37 103-139 84-122 (517)
97 1wnd_A Putative betaine aldehy 21.5 1.5E+02 0.0052 23.9 5.3 37 103-139 70-106 (495)
98 4e4g_A Methylmalonate-semialde 21.4 1.8E+02 0.0061 23.7 5.7 48 92-139 57-110 (521)
99 1t90_A MMSDH, probable methylm 21.2 1.3E+02 0.0044 24.2 4.8 37 103-139 53-89 (486)
100 3ygs_P Procaspase 9; apoptosis 21.2 50 0.0017 20.4 1.9 17 9-25 64-80 (97)
101 3ros_A NAD-dependent aldehyde 21.0 1.6E+02 0.0054 23.7 5.3 51 89-139 16-72 (484)
102 3v4c_A Aldehyde dehydrogenase 21.0 1.6E+02 0.0055 23.9 5.4 38 103-140 73-110 (528)
103 1a4s_A ALDH, betaine aldehyde 20.9 1.6E+02 0.0054 23.8 5.3 49 91-139 50-104 (503)
104 2j6l_A Aldehyde dehydrogenase 20.6 1.6E+02 0.0056 23.7 5.3 38 103-140 69-106 (500)
105 2imp_A Lactaldehyde dehydrogen 20.5 1.4E+02 0.0047 24.0 4.9 37 103-139 54-90 (479)
106 3my7_A Alcohol dehydrogenase/a 20.5 1.7E+02 0.0058 23.2 5.4 37 102-138 16-52 (452)
107 1euh_A NADP dependent non phos 20.5 1.4E+02 0.0047 23.9 4.9 37 103-139 50-86 (475)
108 3i44_A Aldehyde dehydrogenase; 20.4 1.7E+02 0.0057 23.7 5.3 50 91-140 55-110 (497)
109 3etf_A Putative succinate-semi 20.3 1.7E+02 0.0058 23.2 5.3 51 89-139 19-75 (462)
110 1uzb_A 1-pyrroline-5-carboxyla 20.2 1.7E+02 0.0057 23.8 5.3 51 89-139 64-120 (516)
111 3ek1_A Aldehyde dehydrogenase; 20.2 1.4E+02 0.0048 24.2 4.9 37 103-139 80-116 (504)
112 1ez0_A ALDH, aldehyde dehydrog 20.1 1.4E+02 0.0048 24.2 4.9 49 92-140 23-77 (510)
113 2a3d_A Protein (de novo three- 20.0 74 0.0025 18.0 2.2 31 113-147 24-54 (73)
No 1
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=228.65 Aligned_cols=142 Identities=55% Similarity=0.983 Sum_probs=131.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 1 ~~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
|++++|++||||+|||+|||+++|..|+..||++++++.+|+++||++|++||+++|++|.+.|..++.+|.+++..|..
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 67899999999999999999999999999999965556999999999999999999999999999999999999999975
Q ss_pred CCcc------------------------ccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 81 PAGE------------------------KRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMT 136 (156)
Q Consensus 81 ~~~~------------------------~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~ 136 (156)
..+. .++.++.+||++++++|++.||+.|++||+++|++|.++|+.++++|+.+|+
T Consensus 88 ~~~~~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 167 (173)
T 2yrq_A 88 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA 167 (173)
T ss_dssp CCCCSSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 1666888999999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy3264 137 AYKNRS 142 (156)
Q Consensus 137 ~~~~~~ 142 (156)
.|+.++
T Consensus 168 ~y~~k~ 173 (173)
T 2yrq_A 168 AYRAKG 173 (173)
T ss_dssp HHHCCC
T ss_pred HHHhcC
Confidence 999763
No 2
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=100.00 E-value=1.1e-33 Score=202.85 Aligned_cols=135 Identities=30% Similarity=0.492 Sum_probs=124.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCCc-
Q psy3264 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAG- 83 (156)
Q Consensus 5 ~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~~- 83 (156)
.|+.|+||+|||+||+.+.+..|...||++++ .+|+++||++|++||+++|.+|.+.|..++.+|..++..|....+
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~ 78 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRN--SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGE 78 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCC
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 47899999999999999999999999999865 999999999999999999999999999999999999999964321
Q ss_pred ----------c-------------ccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3264 84 ----------E-------------KRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140 (156)
Q Consensus 84 ----------~-------------~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~ 140 (156)
+ .|+.++.+||++++++|++.||++|++||+++|++|.++|+.++++|+.+|++|++
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 16668889999999999999999999999999999999999999999999999986
Q ss_pred c
Q psy3264 141 R 141 (156)
Q Consensus 141 ~ 141 (156)
+
T Consensus 159 ~ 159 (159)
T 2gzk_A 159 K 159 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=212.43 Aligned_cols=136 Identities=21% Similarity=0.409 Sum_probs=119.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA 82 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~ 82 (156)
.++|++||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|.+|.++|..++.+|.++|..|...+
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~--~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999975 99999999999999999999999999999999999999984211
Q ss_pred c--------------------------------cc-------------cccccccCCCCCchhHHHHHHHHhccCChHHH
Q psy3264 83 G--------------------------------EK-------------RGKIKQDNPEYGVGDIAKELGKKWADVDPSVK 117 (156)
Q Consensus 83 ~--------------------------------~~-------------r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK 117 (156)
+ +. |+.+++.| .++|++.||++|++||+++|
T Consensus 114 ~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~----p~ei~k~lg~~Wk~ls~~eK 189 (238)
T 3tmm_A 114 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDS----PQEKLKTVKENWKNLSDSEK 189 (238)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS----HHHHHHHHHHHHHTCCTTTT
T ss_pred CHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHhCCHHHH
Confidence 1 11 44444444 45999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3264 118 TKYEQMAEKDKARYEKEMTAYKNRSVA 144 (156)
Q Consensus 118 ~~y~~~a~~~k~~y~~e~~~~~~~~~~ 144 (156)
++|.++|+.++++|+++|+.|+++++.
T Consensus 190 ~~Y~~~A~~~k~~Y~~e~~~y~~k~~~ 216 (238)
T 3tmm_A 190 ELYIQHAKEDETRYHNEMKSWEEQMIE 216 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999998644
No 4
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.98 E-value=7.2e-33 Score=207.15 Aligned_cols=135 Identities=21% Similarity=0.411 Sum_probs=119.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCC--
Q psy3264 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA-- 82 (156)
Q Consensus 5 ~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~-- 82 (156)
.|++||||+|||+|||+++|..|+.+||++++ ++|+++||++|++||+++|.+|.++|..++.+|.+++..|...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~--~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 47899999999999999999999999999975 99999999999999999999999999999999999999984211
Q ss_pred ------------------------------ccc-------------cccccccCCCCCchhHHHHHHHHhccCChHHHHH
Q psy3264 83 ------------------------------GEK-------------RGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTK 119 (156)
Q Consensus 83 ------------------------------~~~-------------r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~ 119 (156)
.+. |+.+++. .+++|++.||+.|++||+++|++
T Consensus 84 ~q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~----~p~ei~k~lg~~Wk~ls~~eK~~ 159 (214)
T 3tq6_A 84 SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGD----SPQEKLKTVKENWKNLSDSEKEL 159 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCS----SHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhhccC----CHHHHHHHHHHHHHcCCHHHHHH
Confidence 111 3334444 45699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3264 120 YEQMAEKDKARYEKEMTAYKNRSVAP 145 (156)
Q Consensus 120 y~~~a~~~k~~y~~e~~~~~~~~~~~ 145 (156)
|.++|+.++++|+.+|++|+++++..
T Consensus 160 Y~~~A~~~k~~Y~~e~~~y~~~~~~~ 185 (214)
T 3tq6_A 160 YIQHAKEDETRYHNEMKSWEEQMIEV 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999987443
No 5
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=144.94 Aligned_cols=79 Identities=68% Similarity=1.103 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 1 ~~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
|++++|++||||+|||+|||+++|..|+.+||++++++.+|+++||++|++||+++|.+|.++|..++.+|.++|..|.
T Consensus 8 ~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 8 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp CSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999999999999999866799999999999999999999999999999999999998873
No 6
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.92 E-value=1.5e-25 Score=144.09 Aligned_cols=81 Identities=63% Similarity=1.091 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPP 81 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~ 81 (156)
++++|++||||+|||+|||+++|..|+..||++++++.+|+++||++|++||+++|.+|.++|..++.+|.++|..|...
T Consensus 1 ~kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 1 GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999999999999999875568999999999999999999999999999999999999999765
Q ss_pred C
Q psy3264 82 A 82 (156)
Q Consensus 82 ~ 82 (156)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.89 E-value=7.4e-24 Score=138.67 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
|.++|++||||+|||+|||+++|..|+..||++++ .+|+++||++|++||+++|++|.++|..++.+|.+++..|..
T Consensus 1 g~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 77 (92)
T 2crj_A 1 GSSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPF--PEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 77 (92)
T ss_dssp CCCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999875 899999999999999999999999999999999999998854
No 8
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.89 E-value=4.6e-24 Score=135.21 Aligned_cols=76 Identities=22% Similarity=0.475 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
|+||++|+||+|||+||++++|..++..||++++ .+|+++||.+|++||+++|.+|.++|..++.+|..++..|..
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999875 899999999999999999999999999999999999999853
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=136.09 Aligned_cols=79 Identities=29% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPP 81 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~ 81 (156)
|..+|++||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|++|.++|..++.+|.+++..|...
T Consensus 1 g~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 1 GSSGSSGIKKPMSASALFVQDHRPQFLIENPKTSL--EDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp CCCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCH--HHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999975 8999999999999999999999999999999999999999754
Q ss_pred C
Q psy3264 82 A 82 (156)
Q Consensus 82 ~ 82 (156)
.
T Consensus 79 ~ 79 (92)
T 2cs1_A 79 E 79 (92)
T ss_dssp T
T ss_pred C
Confidence 3
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=4.1e-23 Score=134.61 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~ 78 (156)
+++|++||||+|||+|||+++|..|+..||++++ .+|+++||++|++||+++|++|.++|..++.+|.++|..+
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999875 8999999999999999999999999999999999998765
No 11
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.89 E-value=1.6e-23 Score=138.77 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA 82 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~ 82 (156)
+++|++||||+|||+|||+++|..|+.++|++++ .+|+++||++|++||+++|++|.+.|..++.+|..+|.+|....
T Consensus 5 ~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 82 (99)
T 1k99_A 5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDH 82 (99)
T ss_dssp CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCS--HHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999999986 89999999999999999999999999999999999999996543
Q ss_pred c
Q psy3264 83 G 83 (156)
Q Consensus 83 ~ 83 (156)
+
T Consensus 83 P 83 (99)
T 1k99_A 83 P 83 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=1.1e-22 Score=130.32 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
|..+|++||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|++|.++|..++.+|..++..|..
T Consensus 1 g~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~ 77 (82)
T 1wz6_A 1 GSSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDN--RGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRS 77 (82)
T ss_dssp CCSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCT--THHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45789999999999999999999999999999876 899999999999999999999999999999999999999964
No 13
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.88 E-value=2.7e-23 Score=129.61 Aligned_cols=71 Identities=69% Similarity=1.236 Sum_probs=68.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccC
Q psy3264 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78 (156)
Q Consensus 8 ~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~ 78 (156)
+||||+|||+|||+++|..++..||++++++.+|+++||++|++||+++|.+|.++|..++.+|.++|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999986679999999999999999999999999999999999999876
No 14
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=7.5e-23 Score=129.26 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=68.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 5 ~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
+|++||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|++|.++|..++.+|.+++..|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRN--SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSS--SHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCH--HHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999999999976 79999999999999999999999999999999999999885
No 15
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=132.36 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
.+++|+.||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|++|.++|..++.+|.+++..|.
T Consensus 11 ~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 11 SATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDN--RAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 56899999999999999999999999999999875 89999999999999999999999999999999999988874
No 16
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=6.6e-23 Score=136.54 Aligned_cols=77 Identities=25% Similarity=0.487 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
.+++|++||||+|||+|||+++|..|+..||++++ .+|+++||.+|++||+++|++|.++|..++.+|..++..|..
T Consensus 11 ~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 11 KKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATF--GEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999875 899999999999999999999999999999999999999853
No 17
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=4.6e-22 Score=128.27 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 5 ~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
.|+.|+||+|||+|||+++|..|+..||++++ .+|+++||++|++||+++|++|.+.|..++.+|..++..|..
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 74 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRN--SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 48899999999999999999999999999876 899999999999999999999999999999999999999964
No 18
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.86 E-value=5.2e-22 Score=124.50 Aligned_cols=71 Identities=37% Similarity=0.689 Sum_probs=68.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 6 DVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 6 p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
|++||||+|||+||++++|..|+..||++++ .+|+++||++|++| ++|.+|.++|..++.+|.+++..|..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKV--TEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCH--HHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999875 89999999999999 88999999999999999999999964
No 19
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.86 E-value=6.3e-23 Score=134.47 Aligned_cols=75 Identities=31% Similarity=0.627 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
+++|+.|+||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+++|++|.+.|..++.+|..++..|.
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITF--GQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCH--HHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999875 89999999999999999999999999999999999998874
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=131.15 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
..++|+.||||+|||+|||+++|..|+.++|++++ .+|+++||++|++||+++|++|.++|..++.+|.+++..|.-
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHN--AELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 35789999999999999999999999999999876 899999999999999999999999999999999999999964
No 21
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.85 E-value=1e-21 Score=122.34 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=62.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccC
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSY 78 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~ 78 (156)
++||||+|||+||++++|..++..+|++++ .+|+++||++|++||+++|.+|.++|..++.+|.+++..|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 70 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHN--AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 469999999999999999999999999976 8999999999999999999999999999999999999887
No 22
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.85 E-value=3.5e-22 Score=125.27 Aligned_cols=70 Identities=30% Similarity=0.609 Sum_probs=66.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 6 DVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 6 p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
+++||||+|||+|||+++|..|+.+||++++ .+|+++||++|++||+ |++|.++|..++.+|.+++..|.
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKV--TEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCH--HHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999976 8999999999999998 99999999999999999998874
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.85 E-value=1.6e-21 Score=125.13 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=67.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 5 KDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 5 ~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
.++.||||+|||+|||+++|..|+..||+++. .+|+++||++|++||+++|++|.++|..++.+|..++..|.-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHN--AELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 57889999999999999999999999999976 899999999999999999999999999999999999999864
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.85 E-value=1.9e-21 Score=123.97 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=68.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
+.|+||+|||+|||+++|..|+..||++++ .+|+++||.+|++||+++|++|.+.|..++.+|..++..|..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHN--SEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 479999999999999999999999999875 899999999999999999999999999999999999999964
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=1.8e-23 Score=138.07 Aligned_cols=78 Identities=29% Similarity=0.549 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
.+++|++|+||+|||+|||+++|..|+.+||+++.++.+|+++||++|++||+++|++|.++|..++.+|.+++..|.
T Consensus 16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 93 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYA 93 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999833489999999999999999999999999999999999998874
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=5.5e-21 Score=123.44 Aligned_cols=71 Identities=14% Similarity=0.343 Sum_probs=68.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
..|+||+|||+|||+++|..|..+||++++ .+|+++||++|++||+++|++|.++|..++.+|..++..|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKES--AAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 369999999999999999999999999865 89999999999999999999999999999999999999996
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=121.53 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhh
Q psy3264 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68 (156)
Q Consensus 4 ~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k 68 (156)
|+|+.||||+|||+|||+++|..|+.+||+++ ++.+|+++||++|++||+++|++|.++|..+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~-~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFS-DEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCC-SHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999997 34999999999999999999999999999874
No 28
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=5.3e-21 Score=121.54 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=68.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
+.||||+|||+|||+++|..|+.++|++++ .+|+++||++|++||+++|++|.++|..++.+|..++..|.-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHN--AEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 479999999999999999999999999976 899999999999999999999999999999999999999864
No 29
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.84 E-value=3.9e-21 Score=124.41 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=69.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCCc
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAG 83 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~~ 83 (156)
++|+||+|||+||+++.|..++..+|+ . +++|++.||++|++||+++|.+|.++|..++.+|+++|..|.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~--~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~ 76 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-D--RVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPA 76 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-T--HHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 589999999999999999999999998 4 4999999999999999999999999999999999999999976443
No 30
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=119.69 Aligned_cols=67 Identities=34% Similarity=0.563 Sum_probs=62.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 7 VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 7 ~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
+.||||+|||+|||+++|..++..|| .+|+++||++|++||+++|.+|.++|..++.+|.++|..|+
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p------~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP------QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999976554 69999999999999999999999999999999999999884
No 31
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=4e-21 Score=122.75 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=67.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 6 DVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 6 p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
++.||||+|||+||++++|..|+..+|++++ .+|+++||.+|++||+++|++|.+.|..++..|.+++..|.-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHN--SNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCH--HHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 5789999999999999999999999999875 899999999999999999999999999999999999999864
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.82 E-value=1.8e-20 Score=133.86 Aligned_cols=75 Identities=23% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
.++|+.||||+|||+|||+++|..|+.+||++++ ++|+++||++|++||+++|++|.++|..++.+|..++..|.
T Consensus 83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~--~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHhhHHHHHHhCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999875 89999999999999999999999999999999999998874
No 33
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=3.2e-20 Score=124.63 Aligned_cols=74 Identities=24% Similarity=0.479 Sum_probs=67.9
Q ss_pred CCCCCCC-CCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCC
Q psy3264 3 KEKDVKP-RGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPP 81 (156)
Q Consensus 3 k~~p~~P-krP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~ 81 (156)
.++|+.| |||+|||+|||+++|..|+ +++ +.+|+++||++|++||+++|.+|.++|..++.+|.+++..|...
T Consensus 11 ~kd~~~P~KrP~say~lF~~e~r~~~k----~~~--~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 84 (108)
T 1v64_A 11 DKFDGRPTKPPPNSYSLYCAELMANMK----DVP--STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLES 84 (108)
T ss_dssp CCTTTSCCCCCSSHHHHHHHHHHHHCT----TSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999 9999999999999999876 454 48999999999999999999999999999999999999999754
Q ss_pred C
Q psy3264 82 A 82 (156)
Q Consensus 82 ~ 82 (156)
.
T Consensus 85 ~ 85 (108)
T 1v64_A 85 L 85 (108)
T ss_dssp S
T ss_pred C
Confidence 3
No 34
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=119.54 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH---HHHhccCCHHHHHHHHHhhhhhhhhhcccccc
Q psy3264 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKC---AERWKTMSEKEKKRFHEMADKDKKRYDTEMQS 77 (156)
Q Consensus 2 ~k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l---~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~ 77 (156)
+..+++.||||+|||+|||+++|..|+.+ ++++ .+|+++| |++|++||+++|++|.++|..++..|..++..
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~--~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~ 78 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPV--ARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGP 78 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCC--SSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 45688999999999999999999999988 5554 7999999 99999999999999999999999999988754
No 35
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-20 Score=132.59 Aligned_cols=75 Identities=23% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCC
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~ 79 (156)
.++|+.||||+|||+|||+++|..|+..||++++ .+|+++||.+|++||+++|++|.++|..++.+|..++..|.
T Consensus 96 ~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~--~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 170 (173)
T 2yrq_A 96 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 170 (173)
T ss_dssp CCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCH--HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccCcccHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999875 89999999999999999999999999999999999998884
No 36
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=3.1e-19 Score=118.47 Aligned_cols=75 Identities=15% Similarity=0.321 Sum_probs=64.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCC
Q psy3264 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA 82 (156)
Q Consensus 4 ~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~ 82 (156)
+...+||||+|||+|||++++. ...+++++ +.+|+++||++|++||+++|++|.++|..++.+|.++|..|....
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~--~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~ 78 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLP--LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSL 78 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5678999999999999999964 12233343 589999999999999999999999999999999999999996543
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.75 E-value=6.4e-20 Score=118.67 Aligned_cols=69 Identities=10% Similarity=0.236 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhcccc
Q psy3264 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75 (156)
Q Consensus 3 k~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~ 75 (156)
++||+.||||+|||+|||+++|..|+.+||+++..+.+|+ ++|++||+++|++|.++|..++..|....
T Consensus 17 ~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 17 EKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 3689999999999999999999999999999861126776 99999999999999999999999887543
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.67 E-value=5.6e-18 Score=126.39 Aligned_cols=71 Identities=32% Similarity=0.497 Sum_probs=65.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 4 ~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
++|+.||||+|||+|||+++|..++..+| .+|+++||++|++||+++|++|.++|..++.+|..+|..|..
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p------~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSP------QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988765443 599999999999999999999999999999999999999964
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.63 E-value=9.9e-18 Score=126.90 Aligned_cols=71 Identities=32% Similarity=0.497 Sum_probs=65.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCC
Q psy3264 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTP 80 (156)
Q Consensus 4 ~~p~~PkrP~say~lF~~e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~ 80 (156)
++|+.||||+|||+|||+++|..++..+| .+|+++||++|++||+++|++|.++|..++.+|..+|..|..
T Consensus 142 kdp~~PKrP~say~lF~~e~r~~~k~~~p------~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 142 TLLGKPKRPRSAYNVYVAERFQEAKGDSP------QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSCCSSH------HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHhccCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988765443 599999999999999999999999999999999999999954
No 40
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.1e-16 Score=104.98 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=76.2
Q ss_pred hhhhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy3264 68 KKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVN 147 (156)
Q Consensus 68 k~~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~~~~ 147 (156)
-....+.+.+|+.|+...|+.++.+||++++.+|+++||++|++||+++|++|.++|+.++++|..+|+.|+.+......
T Consensus 15 p~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~~ 94 (102)
T 2co9_A 15 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSY 94 (102)
T ss_dssp CCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34456778888888888899999999999999999999999999999999999999999999999999999999988877
Q ss_pred Cccc
Q psy3264 148 EEAD 151 (156)
Q Consensus 148 ~~~~ 151 (156)
.+..
T Consensus 95 ~e~~ 98 (102)
T 2co9_A 95 TDSG 98 (102)
T ss_dssp CCCS
T ss_pred cccc
Confidence 6654
No 41
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=103.39 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=69.6
Q ss_pred hccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy3264 71 YDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPV 146 (156)
Q Consensus 71 y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~~~ 146 (156)
-.+.+.+|+.+....|+.++.+||++++.+|+++||+.|++||+++|++|.++|++++++|.++|+.|+.+.....
T Consensus 8 pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~~~ 83 (92)
T 2cs1_A 8 IKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMS 83 (92)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3567778888888889999999999999999999999999999999999999999999999999999999876643
No 42
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.58 E-value=2.7e-16 Score=103.88 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=70.4
Q ss_pred hhhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3264 69 KRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAP 145 (156)
Q Consensus 69 ~~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~~ 145 (156)
..-.+.+.+|+.++...|+.++.+||++++++|+++||++|++||+++|++|.++|+.++++|+.+|..|..+.+.-
T Consensus 9 ~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~~ 85 (99)
T 1k99_A 9 DFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDL 85 (99)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34566788888888888999999999999999999999999999999999999999999999999999999987643
No 43
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.58 E-value=3.1e-16 Score=97.96 Aligned_cols=69 Identities=25% Similarity=0.483 Sum_probs=63.8
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
.+.+.+|..++.+.|+.++.+||++++++|++.||+.|++||+ |++|.++|+.++++|+++|+.|++++
T Consensus 5 KrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~kg 73 (73)
T 3nm9_A 5 KRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEANG 73 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567778888888899999999999999999999999999998 99999999999999999999999864
No 44
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.57 E-value=7.2e-16 Score=100.48 Aligned_cols=75 Identities=29% Similarity=0.535 Sum_probs=68.2
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~ 144 (156)
.-.+.+.+|+.++...|+.++.+||++++.+|+++||++|++||+++|++|.++|+.++++|..+|+.|+.+...
T Consensus 7 ~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 81 (92)
T 2crj_A 7 GPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 81 (92)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345677888888888899999999999999999999999999999999999999999999999999999876443
No 45
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.57 E-value=2.1e-16 Score=99.68 Aligned_cols=72 Identities=33% Similarity=0.572 Sum_probs=66.5
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~ 141 (156)
...+.+.+|+.+....|+.++..||++++++|+++||+.|++||+++|++|.++|+.++++|..+|+.|+++
T Consensus 6 ~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 6 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445678888888888899999999999999999999999999999999999999999999999999999753
No 46
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.55 E-value=3.4e-16 Score=97.21 Aligned_cols=67 Identities=34% Similarity=0.595 Sum_probs=60.8
Q ss_pred ccccccCCCCCccccccccccCCCCCc--hhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGV--GDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~--~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~ 138 (156)
.+.+.+|..+....|+.++.+||++++ ++|++.||+.|++||+++|++|.++|+.++++|.++|..|
T Consensus 3 KrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777777889999999999876 9999999999999999999999999999999999999876
No 47
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.3e-16 Score=98.98 Aligned_cols=71 Identities=30% Similarity=0.549 Sum_probs=64.2
Q ss_pred hhhccccccCCCCCccccccccccCCCCC--chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 69 KRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 69 ~~y~~~~~~~~~~~~~~r~~~~~~~p~~~--~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
..-.+.+.+|+.++...|+.++.+||+++ +.+|++.||+.|++||+++|++|.++|+.++++|..+|..|+
T Consensus 14 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 14 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556777888888888999999999987 599999999999999999999999999999999999999984
No 48
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.54 E-value=4.6e-16 Score=101.60 Aligned_cols=73 Identities=33% Similarity=0.593 Sum_probs=66.6
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
...+.+.+|+.|+...|+.++.+||++++.+|+++||+.|++||+++|++|.++|+.++++|..+|+.|..+.
T Consensus 20 ~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~~~ 92 (93)
T 1cg7_A 20 APKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATL 92 (93)
T ss_dssp CCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456677777777788999999999999999999999999999999999999999999999999999999865
No 49
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.54 E-value=4.4e-16 Score=96.59 Aligned_cols=68 Identities=24% Similarity=0.437 Sum_probs=60.6
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
.+.+++|+.+....|+.++..+|++++++|++.||+.|++||+++|++|.++|+.++++|..+++.|+
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 4 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 45777888888888999999999999999999999999999999999999999999999999999885
No 50
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.54 E-value=4.9e-16 Score=97.72 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=64.9
Q ss_pred hccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3264 71 YDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141 (156)
Q Consensus 71 y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~ 141 (156)
-.+.+++|+.++...|+.++.+||++++++|+++||+.|++||+++|++|.++|+.++++|..++++|+.+
T Consensus 5 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 5 VKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 35677788888888899999999999999999999999999999999999999999999999999988753
No 51
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.53 E-value=9.4e-16 Score=98.69 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=66.9
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~ 144 (156)
.+.+++|+.++...|+.+..+||++++++|+++||+.|++||+++|++|.++|+.++++|..+|+.|..+...
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~ 76 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 4567788888888899999999999999999999999999999999999999999999999999999866543
No 52
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.53 E-value=1.2e-15 Score=96.88 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=65.9
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~ 143 (156)
.+.+.+|+.++...|+.++..||++++++|+++||+.|++||+++|++|.++|+.++++|..+|+.|+....
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 4 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 456777888888889999999999999999999999999999999999999999999999999999987543
No 53
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.53 E-value=1.1e-15 Score=98.73 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=61.6
Q ss_pred cccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3264 73 TEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144 (156)
Q Consensus 73 ~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~ 144 (156)
+.+.+|..+....|..++..+|+ ++.+|++.||++|++||+++|++|+++|+.++++|+++|..|+.++..
T Consensus 7 rP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 7 SPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34445544555568889999999 899999999999999999999999999999999999999999987665
No 54
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.53 E-value=7.1e-16 Score=98.61 Aligned_cols=74 Identities=31% Similarity=0.532 Sum_probs=66.7
Q ss_pred hhhccccccCCCCCccccccccccCCCCC--chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 69 KRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 69 ~~y~~~~~~~~~~~~~~r~~~~~~~p~~~--~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
..-.+.+.+|+.++...|+.++.+||+++ +.+|++.||+.|++||+++|++|.++|+.++++|..+|..|....
T Consensus 6 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 6 KKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34456778888888888999999999986 499999999999999999999999999999999999999998764
No 55
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.53 E-value=1.5e-15 Score=99.95 Aligned_cols=75 Identities=35% Similarity=0.577 Sum_probs=69.2
Q ss_pred hhhhccccccCCCCCccccccccccCCCCC--chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 68 KKRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 68 k~~y~~~~~~~~~~~~~~r~~~~~~~p~~~--~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
-....+.+.+|+.|+...|+.++.+||+++ +.+|+++||+.|++||+++|++|.++|+.++++|..+|..|+.+.
T Consensus 20 p~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 96 (97)
T 2lhj_A 20 PNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQRK 96 (97)
T ss_dssp CCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567888999999999999999999999 999999999999999999999999999999999999999998753
No 56
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.52 E-value=1.6e-15 Score=97.43 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=66.2
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~ 143 (156)
.+.+++|+.++...|+.++.+||++++++|+++||+.|++||+++|++|.++|+.++++|..++++|+.+..
T Consensus 6 KRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~pr 77 (85)
T 1j46_A 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPR 77 (85)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 456777888888889999999999999999999999999999999999999999999999999999987654
No 57
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.50 E-value=1.5e-15 Score=96.10 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=66.0
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~ 143 (156)
.+.+++|+.++...|+.++.++|++++++|+++||+.|++||+++|++|.++|+.++++|..++++|+.+-.
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Pr 75 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPR 75 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCC
Confidence 457778888888889999999999999999999999999999999999999999999999999999986543
No 58
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.49 E-value=1.7e-15 Score=96.77 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=66.4
Q ss_pred hccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 71 YDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 71 y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
-.+.+++|+.++...|+.++..||++++++|+++||+.|++||+++|++|.++|+.++++|..+|+.|+.+-
T Consensus 7 pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 7 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 456778888888888999999999999999999999999999999999999999999999999999998654
No 59
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-15 Score=97.89 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=65.3
Q ss_pred hhhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 69 KRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 69 ~~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
....+.+++|+.++...|+.++.+||++++.+|+++||++|++||+++|++|.++|+.++++|..++++|+
T Consensus 16 ~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 16 NKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp SSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 35567788888888888999999999999999999999999999999999999999999999999998875
No 60
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.49 E-value=7.1e-16 Score=98.42 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=66.3
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
.-.+.+.+|+.++...|+.++.+||++++.+|+++||+.|++||+++|++|.++|+.++++|..+|+.|+.+-
T Consensus 7 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 7 GARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 3456778888888888999999999999999999999999999999999999999999999999999997653
No 61
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.48 E-value=2.1e-15 Score=94.13 Aligned_cols=68 Identities=35% Similarity=0.579 Sum_probs=62.7
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~ 141 (156)
.+.+.+|..+....|+.++.+||++++++|++.||+.|++| ++|++|.++|+.++++|..+|..|+.+
T Consensus 5 KrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 5 KRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45677777788888999999999999999999999999999 999999999999999999999999864
No 62
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.47 E-value=2.1e-15 Score=95.94 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=63.5
Q ss_pred hccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 71 YDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 71 y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
-.+.+++|+.+....++.++..+|++++++|+++||+.|++||+++|++|.++|+.++++|..++++|+.+.
T Consensus 5 pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 76 (81)
T 1i11_A 5 IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKP 76 (81)
T ss_dssp SCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeecc
Confidence 356778888888888999999999999999999999999999999999999999999999999999987653
No 63
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.46 E-value=3.4e-14 Score=94.02 Aligned_cols=72 Identities=17% Similarity=0.349 Sum_probs=58.7
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAP 145 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~~ 145 (156)
.+.+.+|..|+.+.+. ...++++++++|++.||++|++||+++|++|.++|++++++|+++|+.|..++.+.
T Consensus 10 KrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 10 KPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 3455566555555432 23456688999999999999999999999999999999999999999999987654
No 64
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.46 E-value=4.6e-15 Score=99.10 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=68.5
Q ss_pred hhhhhhhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3264 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142 (156)
Q Consensus 65 ~~~k~~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~ 142 (156)
..+.....+.+.+|+.++...|+.++..+|++++++|+++||+.|++||+++|++|.++|+.++++|+.+++.|+.+-
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~P 101 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQP 101 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC--
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCC
Confidence 344566778889999999999999999999999999999999999999999999999999999999999999998653
No 65
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.44 E-value=1.6e-14 Score=88.62 Aligned_cols=63 Identities=27% Similarity=0.472 Sum_probs=55.4
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~ 138 (156)
.+.+.+|..+....|+.++..|| ++|++.||+.|++||+++|++|.++|+.++++|+++|..|
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777888877765 6999999999999999999999999999999999999988
No 66
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.40 E-value=8.3e-14 Score=93.22 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=60.2
Q ss_pred ccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3264 72 DTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144 (156)
Q Consensus 72 ~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~ 144 (156)
.+.+.+|..|+.+.|+.++ ++++.+|++.||+.|++||+++|++|.++|+.++++|..+|..|..+...
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 87 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPE 87 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 4556667666767677766 78999999999999999999999999999999999999999999987643
No 67
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.38 E-value=8.5e-15 Score=94.99 Aligned_cols=67 Identities=21% Similarity=0.376 Sum_probs=60.8
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMT 136 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~ 136 (156)
.-.+.+.+|+.|+...|+.++.+||++++.+|+++||+.|++||+++|++|.++|+.++++|+++|.
T Consensus 20 ~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 20 KPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888999999999999999999999999999999999999999999999988764
No 68
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.5e-13 Score=85.82 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=57.8
Q ss_pred hhccccccCCCCCccccccccccCCCCCchhHHHHH---HHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q psy3264 70 RYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKEL---GKKWADVDPSVKTKYEQMAEKDKARYEKEM 135 (156)
Q Consensus 70 ~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~k~~---~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~ 135 (156)
...+.+.+|..|+.+.|+.++.+ ++++.+|++.| |++|++||++||++|.++|++++++|++++
T Consensus 10 ~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 10 NRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 34567788888888889999887 89999999999 999999999999999999999999999886
No 69
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-12 Score=83.36 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=52.4
Q ss_pred hccccccCCCCCccccccccccCCCCC-chhHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy3264 71 YDTEMQSYTPPAGEKRGKIKQDNPEYG-VGDIAKELGKKWADVDPSVKTKYEQMAEKD 127 (156)
Q Consensus 71 y~~~~~~~~~~~~~~r~~~~~~~p~~~-~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~ 127 (156)
..+.+.+|..++...|+.++.+||+++ +++|+++||++|++||+++|++|.++|+.+
T Consensus 6 PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 6 SGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356778888888888999999999998 999999999999999999999999999987
No 70
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.16 E-value=5.8e-12 Score=81.25 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=61.2
Q ss_pred hhhhhhhhhccccccCCCCCccccccccccCCCCC--chhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Q psy3264 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134 (156)
Q Consensus 63 ~a~~~k~~y~~~~~~~~~~~~~~r~~~~~~~p~~~--~~e~~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e 134 (156)
...+|-..-.+.+.+|..++...|+.|+.+||+++ +++|+ ++|++||+++|+||+++|++++++|..+
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667788999999999999999999999999 99998 9999999999999999999999999753
No 71
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=75.18 E-value=2.5 Score=30.65 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=39.0
Q ss_pred CCCCCchhHH-HHHHHHhccCChHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3264 93 NPEYGVGDIA-KELGKKWADVDPSVKTKYEQMAEKD-KARYEKEMTAYKNR 141 (156)
Q Consensus 93 ~p~~~~~e~~-k~~~~~Wk~ls~~eK~~y~~~a~~~-k~~y~~e~~~~~~~ 141 (156)
.|.+.+..++ ..||.-|+.+|+++++.|.+..... ...|-..+..|...
T Consensus 69 ~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 69 VPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3667777877 4568999999999999999988774 55688888888744
No 72
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=57.66 E-value=4.7 Score=29.16 Aligned_cols=37 Identities=5% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHhccCCHHHHHHHHHhhhh-hhhhhccccccCC
Q psy3264 43 KKCAERWKTMSEKEKKRFHEMADK-DKKRYDTEMQSYT 79 (156)
Q Consensus 43 k~l~~~Wk~Ls~~eK~~y~~~a~~-~k~~y~~~~~~~~ 79 (156)
..||.-|+.+|+++++.|.+.... ....|-..+..|.
T Consensus 80 ~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 80 IAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp HHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456899999999999999987776 4566777777664
No 73
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=52.43 E-value=6 Score=30.26 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.4
Q ss_pred HHhccCCHHHHHHHHHhhhhh
Q psy3264 47 ERWKTMSEKEKKRFHEMADKD 67 (156)
Q Consensus 47 ~~Wk~Ls~~eK~~y~~~a~~~ 67 (156)
..|..||++.|+-..+.+.+.
T Consensus 232 ~~w~~L~~e~q~~i~~aa~~~ 252 (326)
T 3fxb_A 232 DFYDGLSAEDQQLVQNAALAA 252 (326)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 469999999999998876553
No 74
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=39.32 E-value=2.9 Score=19.73 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=7.3
Q ss_pred CCCCCcHHHHH
Q psy3264 9 PRGRMTAYAFF 19 (156)
Q Consensus 9 PkrP~say~lF 19 (156)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 45778877654
No 75
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=35.42 E-value=51 Score=18.91 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHH
Q psy3264 23 CREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59 (156)
Q Consensus 23 ~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~ 59 (156)
.+..++.-||+......+.++.|..-|..|++..+..
T Consensus 29 yr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 29 YRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp HHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 3445556688865333578889999999998876643
No 76
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=34.92 E-value=55 Score=19.84 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHH
Q psy3264 22 VCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62 (156)
Q Consensus 22 e~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~ 62 (156)
..+..++.-||+....-.+.++.|.+-|..|++..+..-.+
T Consensus 28 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 28 GYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34455666789864333688899999999999877654444
No 77
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=33.90 E-value=70 Score=21.57 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhhhhhhccccccCCCCCccccccccccCCCCCchhHH
Q psy3264 23 CREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIA 102 (156)
Q Consensus 23 ~r~~~~~~~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~~~~r~~~~~~~p~~~~~e~~ 102 (156)
....++..+|.+-..+..+.-.+..+-..|+++-|..-..+-..-+..|.+.+... - .+..+ .
T Consensus 51 ~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Peak~Fv~kli~~~r~l~~~~~~G~--------------k--~~~~~-l 113 (140)
T 2w9y_A 51 MIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTVGK--------------P--IDDAD-A 113 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHTC--------------C--CCTHH-H
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCC--------------C--CCHHH-H
Confidence 34566667776655556777777888888888888877776665555544433222 1 12222 3
Q ss_pred HHHHHHhccCChHHHHH
Q psy3264 103 KELGKKWADVDPSVKTK 119 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~ 119 (156)
+.+...++.||++-|+-
T Consensus 114 K~~~~~ykaLS~~aK~d 130 (140)
T 2w9y_A 114 KRLHQEFQSLSSEDQAA 130 (140)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 45669999999988753
No 78
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=32.53 E-value=61 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q psy3264 101 IAKELGKKWADVDPSVKTKYEQMAEK 126 (156)
Q Consensus 101 ~~k~~~~~Wk~ls~~eK~~y~~~a~~ 126 (156)
.++.-...+.-|+|++|+.|.+..++
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44566678999999999999986553
No 79
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=26.51 E-value=89 Score=25.31 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=38.1
Q ss_pred cccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 90 KQDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 90 ~~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
....|..+..++- +.....|..+|..+|..+...+.....++..++....
T Consensus 35 i~~v~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 90 (490)
T 2wme_A 35 LAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALE 90 (490)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555555543 4445679999999999999999999999999987764
No 80
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=26.03 E-value=52 Score=24.61 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=16.7
Q ss_pred HHHhccCCHHHHHHHHHhhhh
Q psy3264 46 AERWKTMSEKEKKRFHEMADK 66 (156)
Q Consensus 46 ~~~Wk~Ls~~eK~~y~~~a~~ 66 (156)
...|..||++.++...+.+.+
T Consensus 217 ~~~~~~L~~~~q~~l~~a~~~ 237 (316)
T 2vpn_A 217 QDFYEGLSEEDQQLVQDAADA 237 (316)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 357999999999988876544
No 81
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=25.76 E-value=14 Score=18.68 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCCCCCCC-CCCCcHHHHH
Q psy3264 2 PKEKDVKP-RGRMTAYAFF 19 (156)
Q Consensus 2 ~k~~p~~P-krP~say~lF 19 (156)
+.+.|.+| .||.+-|.-|
T Consensus 15 ~~kkp~K~iprP~nk~q~~ 33 (35)
T 4djc_B 15 GSKKPQKPIPRPLNKYQGF 33 (35)
T ss_pred cccCCCCCcCCCCCcccee
Confidence 34445554 6777766544
No 82
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=25.59 E-value=87 Score=21.09 Aligned_cols=72 Identities=7% Similarity=0.169 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHhhhhhhhhhccccccCCCCCcccccc----ccccCCCC----------------CchhHHHHHHHHhc
Q psy3264 51 TMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGK----IKQDNPEY----------------GVGDIAKELGKKWA 110 (156)
Q Consensus 51 ~Ls~~eK~~y~~~a~~~k~~y~~~~~~~~~~~~~~r~~----~~~~~p~~----------------~~~e~~k~~~~~Wk 110 (156)
+||++.|....++-...+....... ...+.. +...+++- -..+.++.-...+.
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~~~-------~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~ 117 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPPVN-------VSELETMHRLVTAENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYR 117 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCC-------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhcc-------HHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999888776655433211 111112 12222220 01223455567899
Q ss_pred cCChHHHHHHHHHHHHHHH
Q psy3264 111 DVDPSVKTKYEQMAEKDKA 129 (156)
Q Consensus 111 ~ls~~eK~~y~~~a~~~k~ 129 (156)
-|++++|..|.+..++...
T Consensus 118 vLTPEQk~ql~e~~~~r~~ 136 (145)
T 3itf_A 118 LLTPEQQAVLNEKHQQRME 136 (145)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 9999999999986555433
No 83
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=25.57 E-value=58 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.9
Q ss_pred HHHhccCChHHHHHHHHHHHHHHH
Q psy3264 106 GKKWADVDPSVKTKYEQMAEKDKA 129 (156)
Q Consensus 106 ~~~Wk~ls~~eK~~y~~~a~~~k~ 129 (156)
...|..||.+||..|++-...++.
T Consensus 8 Rke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 8 RKNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp ECBGGGCCHHHHHHHHHHHHHHHH
T ss_pred ecchHHCCHHHHHHHHHHHHHHHh
Confidence 357999999999999998888776
No 84
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.55 E-value=1.2e+02 Score=18.50 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCcc---hHHHHHHHHHHHhccCCHHHHHHHHH
Q psy3264 22 VCREEHKKKHPEENV---VFAEFSKKCAERWKTMSEKEKKRFHE 62 (156)
Q Consensus 22 e~r~~~~~~~p~~~~---~~~ei~k~l~~~Wk~Ls~~eK~~y~~ 62 (156)
..|..++.-||+... ...+.++.|.+-|..|++..+..-.+
T Consensus 37 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 37 AYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 344455666888542 13678899999999999887654433
No 85
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=24.70 E-value=1.3e+02 Score=23.78 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=31.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138 (156)
Q Consensus 102 ~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~ 138 (156)
++..-..|..+|..+|..+..........+..++..-
T Consensus 23 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 59 (427)
T 1o20_A 23 VREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEA 59 (427)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445567999999999999999999999888887665
No 86
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=24.35 E-value=13 Score=25.77 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3264 116 VKTKYEQMAEKDKARYEK 133 (156)
Q Consensus 116 eK~~y~~~a~~~k~~y~~ 133 (156)
.+..|...|+.--++|-.
T Consensus 133 d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 133 HKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 455666666555555543
No 87
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A
Probab=22.80 E-value=2e+02 Score=20.59 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHhccCCHHHHHHHHHhhhhh
Q psy3264 15 AYAFFVQVCREEHKKK----HPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67 (156)
Q Consensus 15 ay~lF~~e~r~~~~~~----~p~~~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~ 67 (156)
...+|.+++...+... ||.+-. |..||+.+|....+.+.+-
T Consensus 152 ~H~vWA~~r~~~~~~~g~~~hP~LVP------------y~~L~e~eK~~dR~~~~e~ 196 (210)
T 4esu_A 152 YHNTWGRKKKQELEAKGGGTHPLLVP------------YDTLTAKEKARDREKAQEL 196 (210)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCTTCSC------------GGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCccC------------hHhcCHHHHHHhHHHHHHH
Confidence 3455776666655543 566644 9999999999998887663
No 88
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=22.55 E-value=1.4e+02 Score=24.11 Aligned_cols=37 Identities=3% Similarity=-0.099 Sum_probs=31.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+..........+..++....
T Consensus 60 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 96 (484)
T 3ifg_A 60 QAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALIL 96 (484)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444679999999999999999999999888887653
No 89
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=22.23 E-value=1.4e+02 Score=23.94 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|.............+..++..-.
T Consensus 58 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 94 (487)
T 2w8n_A 58 YEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARII 94 (487)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344579999999999999999999999998887653
No 90
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=22.22 E-value=1.5e+02 Score=23.80 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138 (156)
Q Consensus 102 ~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~ 138 (156)
++.....|..+|..+|..+..........+..++..-
T Consensus 53 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (485)
T 4dng_A 53 AQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMM 89 (485)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567999999999999999999888888887754
No 91
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=22.03 E-value=1.4e+02 Score=23.86 Aligned_cols=37 Identities=3% Similarity=0.015 Sum_probs=31.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+..........+..++..-.
T Consensus 55 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 91 (478)
T 3ty7_A 55 DDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAI 91 (478)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445679999999999999999999998888887654
No 92
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=21.98 E-value=77 Score=25.43 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=36.6
Q ss_pred ccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 91 QDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 91 ~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
...+..+..++. +.....|..+|..+|..+..........+..++..-.
T Consensus 20 ~~~~~~~~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 74 (474)
T 4h7n_A 20 YVIIPPPPRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEAL 74 (474)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 4445679999999999999999999999988887653
No 93
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=21.97 E-value=60 Score=16.26 Aligned_cols=16 Identities=0% Similarity=0.052 Sum_probs=12.4
Q ss_pred ccCChHHHHHHHHHHH
Q psy3264 110 ADVDPSVKTKYEQMAE 125 (156)
Q Consensus 110 k~ls~~eK~~y~~~a~ 125 (156)
.+||+++|..|++.-.
T Consensus 16 ~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIR 31 (34)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHh
Confidence 4789999999987543
No 94
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=21.85 E-value=1.5e+02 Score=23.75 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=32.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 102 ~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
++.....|..+|..+|..+..........+..++..-.
T Consensus 23 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 60 (468)
T 1vlu_A 23 ARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEAN 60 (468)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555679999999999999999999999998887763
No 95
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=21.72 E-value=1.5e+02 Score=23.93 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred cCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 92 DNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 92 ~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
..+..+..++- +.....|..+|..+|..+.........++..++....
T Consensus 55 ~v~~~~~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 108 (498)
T 4f3x_A 55 DLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALE 108 (498)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444545543 3444679999999999999999999999988887654
No 96
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=21.69 E-value=1.5e+02 Score=24.13 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=31.5
Q ss_pred HHHHH--HhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGK--KWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~--~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.... .|..+|..+|..+...+......+..++....
T Consensus 84 ~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 122 (517)
T 2o2p_A 84 KEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIE 122 (517)
T ss_dssp HHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445 79999999999999999999999999888764
No 97
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=21.54 E-value=1.5e+02 Score=23.92 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|.............+..++....
T Consensus 70 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 106 (495)
T 1wnd_A 70 DAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELE 106 (495)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444579999999999999999999999999887654
No 98
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=21.43 E-value=1.8e+02 Score=23.71 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=36.4
Q ss_pred cCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 92 DNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 92 ~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
..+..+..++- +.....|..+|..+|..+..........+..++....
T Consensus 57 ~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 110 (521)
T 4e4g_A 57 TVALASDADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEML 110 (521)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555543 4445679999999999999999999999998887654
No 99
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=21.17 E-value=1.3e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+..........+..++..-.
T Consensus 53 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 89 (486)
T 1t90_A 53 AEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLI 89 (486)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344579999999999999999999999998887654
No 100
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.16 E-value=50 Score=20.38 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=14.1
Q ss_pred CCCCCcHHHHHHHHHHH
Q psy3264 9 PRGRMTAYAFFVQVCRE 25 (156)
Q Consensus 9 PkrP~say~lF~~e~r~ 25 (156)
|+|...||..||..-+.
T Consensus 64 ~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 64 ETRGSQALPLFISCLED 80 (97)
T ss_dssp TTSCTTHHHHHHHHHHT
T ss_pred HHcChHHHHHHHHHHHH
Confidence 67888999999987653
No 101
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=20.98 E-value=1.6e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=38.5
Q ss_pred ccccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 89 IKQDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 89 ~~~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
.....+..+..++- +.....|..+|..+|..+..........+..++..-.
T Consensus 16 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 72 (484)
T 3ros_A 16 AFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMM 72 (484)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455665655543 4444579999999999999999999999988887654
No 102
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=20.96 E-value=1.6e+02 Score=23.94 Aligned_cols=38 Identities=5% Similarity=0.027 Sum_probs=31.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~ 140 (156)
+.....|..+|..+|..+.........++..++.....
T Consensus 73 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 110 (528)
T 3v4c_A 73 EEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGS 110 (528)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44456799999999999999999999988888876543
No 103
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=20.85 E-value=1.6e+02 Score=23.82 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=36.6
Q ss_pred ccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 91 QDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 91 ~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
...+..+..++- +.....|..+|..+|............++..++....
T Consensus 50 ~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 104 (503)
T 1a4s_A 50 CQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLE 104 (503)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444544443 3334579999999999999999999999998887754
No 104
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=20.62 E-value=1.6e+02 Score=23.73 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~ 140 (156)
+.....|..+|..+|.............+..++.....
T Consensus 69 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 106 (500)
T 2j6l_A 69 REAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVS 106 (500)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445799999999999999999999999998876543
No 105
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=20.55 E-value=1.4e+02 Score=23.97 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+..........+..++..-.
T Consensus 54 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 90 (479)
T 2imp_A 54 ERAQPEWEALPAIERASWLRKISAGIRERASEISALI 90 (479)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444579999999999999999999999998887653
No 106
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=20.52 E-value=1.7e+02 Score=23.20 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138 (156)
Q Consensus 102 ~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~ 138 (156)
++.....|..+|.++|......+......+..++...
T Consensus 16 A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~ 52 (452)
T 3my7_A 16 VKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQ 52 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445567999999999999999988888888877654
No 107
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=20.51 E-value=1.4e+02 Score=23.93 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+...+......+..++....
T Consensus 50 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 86 (475)
T 1euh_A 50 KKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAIL 86 (475)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444579999999999999999999999998887653
No 108
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=20.38 E-value=1.7e+02 Score=23.70 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=36.8
Q ss_pred ccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3264 91 QDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140 (156)
Q Consensus 91 ~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~ 140 (156)
...+..+..++- +.....|..+|..+|..+..........+..++.....
T Consensus 55 ~~v~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 110 (497)
T 3i44_A 55 AVISLGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTIS 110 (497)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555543 44446799999999999999999999998888876543
No 109
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=20.28 E-value=1.7e+02 Score=23.24 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred ccccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 89 IKQDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 89 ~~~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
.....+..+..++- +.....|..+|..+|..+..........+..++..-.
T Consensus 19 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 75 (462)
T 3etf_A 19 TLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCI 75 (462)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555543 4444679999999999999999998888888877653
No 110
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=20.24 E-value=1.7e+02 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.7
Q ss_pred ccccCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 89 IKQDNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 89 ~~~~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+....+..+..++- +.....|..+|..+|..+...+......+..++....
T Consensus 64 ~i~~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 120 (516)
T 1uzb_A 64 VVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATL 120 (516)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555543 3344579999999999999999999999998887754
No 111
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=20.15 E-value=1.4e+02 Score=24.20 Aligned_cols=37 Identities=5% Similarity=-0.059 Sum_probs=31.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3264 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139 (156)
Q Consensus 103 k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~ 139 (156)
+.....|..+|..+|..+..........+..++....
T Consensus 80 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 116 (504)
T 3ek1_A 80 AKALSGWAAKTAKERAGILRKWFDLIIANADDIALIM 116 (504)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444679999999999999999999999888887653
No 112
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=20.13 E-value=1.4e+02 Score=24.16 Aligned_cols=49 Identities=6% Similarity=0.122 Sum_probs=36.7
Q ss_pred cCCCCCchhHH------HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3264 92 DNPEYGVGDIA------KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140 (156)
Q Consensus 92 ~~p~~~~~e~~------k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~~~~ 140 (156)
..+..+..++- +.....|..+|..+|..+...+......+..++..-..
T Consensus 23 ~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 77 (510)
T 1ez0_A 23 AFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAH 77 (510)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444544433 34445799999999999999999999999988877643
No 113
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=20.01 E-value=74 Score=17.99 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy3264 113 DPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVN 147 (156)
Q Consensus 113 s~~eK~~y~~~a~~~k~~y~~e~~~~~~~~~~~~~ 147 (156)
|+.+-..|. +....|+.+++.|+.++++.++
T Consensus 24 seaelaafe----keiaafeselqaykgkgnpeve 54 (73)
T 2a3d_A 24 SEAELAAFE----KEIAAFESELQAYKGKGNPEVE 54 (73)
T ss_dssp GGGTHHHHH----HHHHHHHHHHHHSSSCCSSTTT
T ss_pred cHHHHHHHH----HHHHHHHHHHHHhccCCChHHH
Confidence 444444443 4556789999999999888764
Done!