Your job contains 1 sequence.
>psy3264
MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF
HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKY
EQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3264
(156 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 322 3.6e-40 2
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 322 3.6e-40 2
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ... 419 2.9e-39 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 398 3.2e-39 2
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein... 386 9.2e-36 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 278 6.3e-35 2
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 337 9.0e-34 2
FB|FBgn0011764 - symbol:Dsp1 "Dorsal switch protein 1" sp... 367 9.5e-34 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 340 3.0e-33 2
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 361 4.1e-33 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 322 3.0e-31 2
RGD|1594733 - symbol:LOC690521 "similar to High mobility ... 316 3.0e-31 2
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 340 6.9e-31 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 340 6.9e-31 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 340 6.9e-31 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 337 1.4e-30 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 337 1.4e-30 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 337 1.4e-30 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 337 1.4e-30 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 333 3.8e-30 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 304 4.2e-30 2
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 332 4.9e-30 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 302 8.6e-30 2
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 324 3.4e-29 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 324 3.4e-29 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 324 3.4e-29 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 324 3.4e-29 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 324 3.4e-29 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 324 3.4e-29 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 324 3.4e-29 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 323 4.4e-29 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 322 5.6e-29 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 321 7.1e-29 1
UNIPROTKB|Q5T7C0 - symbol:HMGB1 "High mobility group prot... 321 7.1e-29 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 318 1.5e-28 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 318 1.5e-28 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 317 1.9e-28 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 316 2.4e-28 1
RGD|2319567 - symbol:LOC100361707 "Ac2-008-like" species:... 316 2.4e-28 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 311 8.2e-28 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 311 8.2e-28 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 310 1.0e-27 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 307 2.2e-27 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 307 2.2e-27 1
UNIPROTKB|F1LY72 - symbol:F1LY72 "Uncharacterized protein... 306 2.8e-27 1
UNIPROTKB|F1LZG8 - symbol:F1LZG8 "Uncharacterized protein... 306 2.8e-27 1
UNIPROTKB|F1M4J9 - symbol:F1M4J9 "Uncharacterized protein... 306 2.8e-27 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 305 3.5e-27 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 304 4.5e-27 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 303 5.7e-27 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 303 5.7e-27 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 302 7.3e-27 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 302 7.3e-27 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 302 7.3e-27 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 278 7.4e-27 2
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 300 1.2e-26 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 300 1.2e-26 1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein... 296 3.2e-26 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 295 4.0e-26 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 289 1.8e-25 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 280 1.6e-24 1
UNIPROTKB|D4A535 - symbol:D4A535 "Uncharacterized protein... 279 2.0e-24 1
UNIPROTKB|P23497 - symbol:SP100 "Nuclear autoantigen Sp-1... 216 4.3e-24 2
UNIPROTKB|F1LZ54 - symbol:F1LZ54 "Uncharacterized protein... 269 2.3e-23 1
UNIPROTKB|F1LTL3 - symbol:F1LTL3 "Uncharacterized protein... 194 3.4e-23 2
UNIPROTKB|F1LVZ2 - symbol:F1LVZ2 "Uncharacterized protein... 266 4.8e-23 1
RGD|1583212 - symbol:LOC685091 "similar to High mobility ... 238 6.9e-23 2
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 250 2.4e-21 1
RGD|2319002 - symbol:LOC100365478 "high-mobility group bo... 240 2.7e-20 1
WB|WBGene00001972 - symbol:hmg-1.2 species:6239 "Caenorha... 235 9.2e-20 1
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein... 233 1.5e-19 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 194 2.0e-15 1
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot... 178 1.0e-13 1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4... 168 1.2e-12 1
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot... 166 1.9e-12 1
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 155 4.0e-10 1
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit... 155 4.3e-10 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 142 6.6e-10 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 137 2.2e-09 1
SGD|S000001515 - symbol:IXR1 "Protein that binds DNA intr... 147 2.3e-09 1
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 147 2.6e-09 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 134 4.7e-09 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 134 4.7e-09 1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 134 4.7e-09 1
DICTYBASE|DDB_G0282427 - symbol:DDB_G0282427 "HMG1/2 (hig... 138 7.2e-09 2
UNIPROTKB|Q5ZKF4 - symbol:HMG20A "High mobility group pro... 136 1.4e-08 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 129 1.6e-08 1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 138 1.9e-08 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 128 2.0e-08 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 127 2.6e-08 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 138 2.7e-08 1
UNIPROTKB|C9J8X5 - symbol:HMG20B "SWI/SNF-related matrix-... 127 3.2e-08 1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 137 3.5e-08 1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 137 3.5e-08 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 137 3.5e-08 1
WARNING: Descriptions of 50 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 322 (118.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPN 93
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 41/130 (31%), Positives = 65/130 (50%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K A+ K EKE K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSSKEKGKFEDMAK--AD--KLRYEKEMKNYVPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 122 (48.0 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS- 142
E R KIK ++P +GD+AK+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 108 EFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 167
Query: 143 -------VAPVN-------EEADEEDDE 156
VA EE DE++DE
Sbjct: 168 VDAGKKVVAKAEKSKKKKEEEEDEDEDE 195
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DK RYEKEM Y
Sbjct: 61 EDMAKADKLRYEKEMKNY 78
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 322 (118.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPN 93
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 41/130 (31%), Positives = 65/130 (50%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K A+ K EKE K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSSKEKGKFEDMAK--AD--KLRYEKEMKNYVPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 122 (48.0 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS- 142
E R KIK ++P +GD+AK+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 108 EFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 167
Query: 143 -------VAPVN-------EEADEEDDE 156
VA EE DE++DE
Sbjct: 168 VDAGKKVVAKAEKSKKKKEEEEDEDEDE 195
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DK RYEKEM Y
Sbjct: 61 EDMAKADKLRYEKEMKNY 78
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 78/149 (52%), Positives = 105/149 (70%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YA+FVQ CREEHKKKHPE +V F+EFSKKC+ERWKTMS KEK +F +MA +D
Sbjct: 7 KPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQD 66
Query: 68 KKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKD 127
K RY+ EM++Y PP GE NP +GDIAK+LG+ W VK YE+ A K
Sbjct: 67 KVRYEREMKNYIPPKGE--------NPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKL 118
Query: 128 KARYEKEMTAYKNRSVAPVNEEADEEDDE 156
K +Y+K++ Y+ + +A +++ EDDE
Sbjct: 119 KEKYDKDIALYRTKGIAGFSKKEGGEDDE 147
Score = 110 (43.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQM 123
KD ++ +M SY R + K+ +PE V + +K+ ++W + K K+E M
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 124 AEKDKARYEKEMTAY 138
A++DK RYE+EM Y
Sbjct: 63 AKQDKVRYEREMKNY 77
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 398 (145.2 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 81/163 (49%), Positives = 104/163 (63%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK------------------------IKQDNPEY 96
+MA DK RYD EM++Y PP G+K+GK IK ++P
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 97 GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+GD AK+LG+ W++ K YEQ A K K +YEK++ AY+
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Score = 105 (42.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 MAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 101 (40.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKGEAGK 172
Score = 37 (18.1 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 136 TAYKNRSVAPVNEEADEEDDE 156
T K ++ P +EE +EE++E
Sbjct: 179 TGSKKKN-EPEDEEEEEEEEE 198
Score = 34 (17.0 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 148 EEADEEDDE 156
EE +EE+DE
Sbjct: 192 EEEEEEEDE 200
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 73/143 (51%), Positives = 98/143 (68%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKY 120
+MA DK RY+ EM++Y PP GE +P +GD+ K+LG+ W + K Y
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGE--------HPGLSIGDVVKKLGEMWNNTAADDKQPY 112
Query: 121 EQMAEKDKARYEKEMTAYKNRSV 143
E+ A K K +YEK++ AY+ + +
Sbjct: 113 EKKAAKLKEKYEKDIAAYRAKGM 135
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 278 (102.9 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYA+FV+ CREEH KK+P V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQD 92
++A +DK RYD EM Y P G+K K K+D
Sbjct: 61 EDLAKQDKARYDQEMMHYNP--GKKGRKQKKD 90
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
+E + K G ++ F + C E K P+E F + +K+ R+ ++E ++
Sbjct: 25 EEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARY----DQEMMHYNP 80
Query: 63 MADKDKKRYDTEMQSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSV 116
K +K+ PP+G E+R IK NP G+GD+AK+LG W ++ S
Sbjct: 81 -GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSE 139
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNR----SVAPVNEEADEEDDE 156
K + A+K K +Y+K+M Y+ + S + +E D++DD+
Sbjct: 140 KQPFLSNADKLKDKYQKDMAFYRKKGSGGSSSAKSEPKDDDDDD 183
Score = 116 (45.9 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR-- 141
E+R IK NP G+GD+AK+LG W ++ S K + A+K K +Y+K+M Y+ +
Sbjct: 107 EQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYRKKGS 166
Query: 142 ---SVA---PVN--------EEADEEDDE 156
S A P + EE D++DDE
Sbjct: 167 GGSSSAKSEPKDDDDDDDEEEEDDDDDDE 195
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 337 (123.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YA+FVQ CREEHKKKHP+ +V FAEFS+KC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
EMA DK RYD EM++Y PP GEK+GK K N
Sbjct: 61 EEMAKGDKARYDREMKNYVPPKGEKKGKKKDPN 93
Score = 166 (63.5 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 44/133 (33%), Positives = 65/133 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F E +K R+ ++E K + +K K+ D
Sbjct: 38 FAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARY----DREMKNYVPPKGEKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK D+P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRS 142
+YEK++ AY+ +S
Sbjct: 154 KYEKDIAAYRAKS 166
Score = 108 (43.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 34/133 (25%), Positives = 64/133 (48%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
+ A K K++Y+ ++ +Y R K K D + G G + G K +P + + E
Sbjct: 146 QKAAKLKEKYEKDIAAY-------RAKSKSDAGKKGPG---RPAGSK-KKAEPEEEEEEE 194
Query: 122 QMAEKDKARYEKE 134
+ E+++ ++E
Sbjct: 195 EDEEEEEEEEDEE 207
Score = 103 (41.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +++ ++W + K K+E+
Sbjct: 5 DPNKPR--GKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEE 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P E+ ++ D
Sbjct: 63 MAKGDKARYDREMKNY----VPPKGEKKGKKKD 91
Score = 46 (21.3 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 120 YEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE 156
Y ++ D + A + P EE +EED+E
Sbjct: 162 YRAKSKSDAGKKGPGRPAGSKKKAEPEEEEEEEEDEE 198
Score = 34 (17.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 148 EEADEEDDE 156
EE DEE++E
Sbjct: 193 EEEDEEEEE 201
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 67/94 (71%), Positives = 78/94 (82%)
Query: 6 DVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMAD 65
D KPRGRMTAYA+FVQ CREEHKKKHP+E V+FAEFS+KCAERWKTM +KEKKRFHEMA+
Sbjct: 176 DAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAE 235
Query: 66 KDKKRYDTEMQSYTPPAG------EKRGKIKQDN 93
KDK+RY+ EMQ+Y PP G +KR +IK N
Sbjct: 236 KDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPN 269
Score = 243 (90.6 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 54/132 (40%), Positives = 77/132 (58%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTE- 74
+A F + C E K +E F E ++K +R++ + + + KKR +
Sbjct: 208 FAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKD 267
Query: 75 -------MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKD 127
+ ++ ++R K+K NPE+GVGDIAKELG+KW+DVDP VK KYE MAE+D
Sbjct: 268 PNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERD 327
Query: 128 KARYEKEMTAYK 139
KARYE+EMT YK
Sbjct: 328 KARYEREMTEYK 339
Score = 111 (44.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 32/128 (25%), Positives = 63/128 (49%)
Query: 3 KEKDVK----PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKK 58
K K +K P+ ++A+ +F R + K +PE V + +K+ +W + + K+
Sbjct: 261 KRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQ 318
Query: 59 RFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKT 118
++ MA++DK RY+ EM Y + GKI P A+ +K A + + +
Sbjct: 319 KYESMAERDKARYEREMTEY-----KTSGKIAMSAPSMQASMQAQ--AQKAALLAAAAQQ 371
Query: 119 KYEQMAEK 126
+++Q+ E+
Sbjct: 372 QHQQLEEQ 379
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 340 (124.7 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 165 (63.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 52/161 (32%), Positives = 75/161 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAY--KNRSVA-------PV-----NEEADEEDDE 156
+YEK++ AY K +S A P NE DEE++E
Sbjct: 154 KYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
Score = 105 (42.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 MAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 103 (41.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEAGK 172
Score = 38 (18.4 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 116 VKTKYEQMAEKDKARYEKEM--------TAYKNRSVAPVNEEADEEDDE 156
+K KYE+ +A+ + E T K ++ P +EE +EE++E
Sbjct: 151 LKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKN-EPEDEEEEEEEEE 198
Score = 35 (17.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 148 EEADEEDDE 156
EE DE+D+E
Sbjct: 196 EEEDEDDEE 204
Score = 35 (17.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 148 EEADEEDDE 156
EE ++EDDE
Sbjct: 195 EEEEDEDDE 203
Score = 34 (17.0 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 148 EEADEEDDE 156
EE +EE+DE
Sbjct: 192 EEEEEEEDE 200
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 77/163 (47%), Positives = 102/163 (62%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K K RG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSY------------------TPPAG------EKRGKIKQDNPEY 96
+MA DK RY+ EM++Y TPP+ E R KIK ++P
Sbjct: 61 EDMAKADKARYEREMKTYISPKGETKKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 97 GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+GD+ K+LG+ W + K YE+MA K K +YEK++ AY+
Sbjct: 121 SIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAAYR 163
Score = 102 (41.0 bits), Expect = 0.00042, P = 0.00042
Identities = 34/127 (26%), Positives = 59/127 (46%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ +A+ F R + K +HP ++ + KK E W + +K+ +
Sbjct: 88 KFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGLSI--GDVVKKLGEMWTNTAADDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
+MA K K++Y+ ++ +Y R K K D + GV K KK + D + E
Sbjct: 146 KMAAKLKEKYEKDIAAY-------RAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 198
Query: 122 QMAEKDK 128
+ E+D+
Sbjct: 199 EEEEEDE 205
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 322 (118.4 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 58/90 (64%), Positives = 71/90 (78%)
Query: 5 KD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEM 63
KD KPRG+M++YA+FVQ CREEHKKKHPE V F+EFSKKC+ERWKTMS KEK +F +M
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
A DK RY+ EM++Y PP GEK+ + K N
Sbjct: 63 AKLDKARYEREMKNYIPPKGEKKKRFKDPN 92
Score = 170 (64.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 51/173 (29%), Positives = 82/173 (47%)
Query: 3 KEKDVKPRGRMTA-YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
+E+ K T ++ F + C E K +E F + +K R+ E+E K +
Sbjct: 23 REEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARY----EREMKNYI 78
Query: 62 EMADKDKKRYDTEMQSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPS 115
+ KKR+ PP+ E R K+K++ P +GD+AK LG+ W +
Sbjct: 79 PPKGEKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSE 138
Query: 116 VKTKYEQMAEKDKARYEKEMTAYKNR-------SVAP-----VNEEADEEDDE 156
K YE+ A K K +YEK++ AY+++ + AP N+E DE+DDE
Sbjct: 139 EKQPYEKKAAKLKEKYEKDIAAYRSKGKVGGGAAKAPSKPDKANDE-DEDDDE 190
Score = 133 (51.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
++KKRF KD ++ E R K+K++ P +GD+AK LG+ W +
Sbjct: 83 EKKKRF-----KDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISS 137
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYKNR-------SVAPV--------NEEADEEDDE 156
K YE+ A K K +YEK++ AY+++ + AP +E+ DEE+DE
Sbjct: 138 EEKQPYEKKAAKLKEKYEKDIAAYRSKGKVGGGAAKAPSKPDKANDEDEDDDEEEDE 194
Score = 106 (42.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQM 123
KD + +M SY R + K+ +PE V + +K+ ++W + K K+E M
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
Query: 124 AEKDKARYEKEMTAY 138
A+ DKARYE+EM Y
Sbjct: 63 AKLDKARYEREMKNY 77
Score = 37 (18.1 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 147 NEEADEEDDE 156
+EE DE+DD+
Sbjct: 189 DEEEDEDDDD 198
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 316 (116.3 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 57/93 (61%), Positives = 70/93 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK MS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKAMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG-----EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKAR 130
PP+ E R KIK ++P +GD+ K+LG+ W + K E+MA K K +
Sbjct: 94 APKRPPSAFLFCSEYRPKIKGEHPALSIGDVTKKLGEVWTNTASDDKQPCEKMAAKLKEK 153
Query: 131 YEKEMTAYK 139
YEK+ AY+
Sbjct: 154 YEKDTAAYR 162
Score = 109 (43.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
Score = 43 (20.2 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 82 AGEKRGKIKQDNPEY---GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
A + + K ++D Y G D AK K + S K K E+ E+D+ E+E
Sbjct: 147 AAKLKEKYEKDTAAYRAKGKPDAAK---KGVVKAERSKKKKEEEDDEEDEDDEEEEEE-- 201
Query: 139 KNRSVAPVNEEADEEDDE 156
+E DEEDD+
Sbjct: 202 --------EDEDDEEDDD 211
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/161 (32%), Positives = 75/161 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAY--KNRSVA-------PV-----NEEADEEDDE 156
+YEK++ AY K +S A P NE DEE++E
Sbjct: 154 KYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 MAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 103 (41.3 bits), Expect = 0.00030, P = 0.00030
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/161 (32%), Positives = 75/161 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAY--KNRSVA-------PV-----NEEADEEDDE 156
+YEK++ AY K +S A P NE DEE++E
Sbjct: 154 KYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 MAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 103 (41.3 bits), Expect = 0.00030, P = 0.00030
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEAGK 172
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 MAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 30/101 (29%), Positives = 46/101 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWA 110
P A E R KIK ++P +GD AK+LG+ W+
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS 134
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 60/93 (64%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
++A DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRSVAPVNEE 149
+YEK++ AY+ + + V ++
Sbjct: 154 KYEKDIAAYRAKGKSEVGKK 173
Score = 102 (41.0 bits), Expect = 0.00041, P = 0.00041
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
+A+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 LAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 101 (40.6 bits), Expect = 0.00061, P = 0.00061
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEVGK 172
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 60/93 (64%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
++A DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRSVAPVNEE 149
+YEK++ AY+ + + V ++
Sbjct: 154 KYEKDIAAYRAKGKSEVGKK 173
Score = 102 (41.0 bits), Expect = 0.00041, P = 0.00041
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
+A+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 LAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
Score = 101 (40.6 bits), Expect = 0.00061, P = 0.00061
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEVGK 172
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YA+FVQ CREEHKKKHP+ +V FAEFS+KC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
EMA DK RYD EM++Y PP GEK+GK K N
Sbjct: 61 EEMAKGDKARYDREMKNYVPPKGEKKGKKKDPN 93
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 44/133 (33%), Positives = 65/133 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F E +K R+ ++E K + +K K+ D
Sbjct: 38 FAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARY----DREMKNYVPPKGEKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK D+P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRS 142
+YEK++ AY+ +S
Sbjct: 154 KYEKDIAAYRAKS 166
Score = 103 (41.3 bits), Expect = 0.00029, P = 0.00029
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +++ ++W + K K+E+
Sbjct: 5 DPNKPR--GKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEE 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
MA+ DKARY++EM Y V P E+ ++ D
Sbjct: 63 MAKGDKARYDREMKNY----VPPKGEKKGKKKD 91
Score = 102 (41.0 bits), Expect = 0.00040, P = 0.00040
Identities = 33/133 (24%), Positives = 63/133 (47%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K HP ++ + +KK E W K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSI--GDTAKKLGEMWSEQLAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
+ A K K++Y+ ++ +Y R K K D + G G + G K +P + + E
Sbjct: 146 QKAAKLKEKYEKDIAAY-------RAKSKSDAGKKGPG---RPAGSK-KKAEPEEEEEEE 194
Query: 122 QMAEKDKARYEKE 134
+ E+++ ++E
Sbjct: 195 EDEEEEEEEEDEE 207
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 60/93 (64%), Positives = 73/93 (78%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
++A DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 52/161 (32%), Positives = 75/161 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAY--KNRSVA-------PV-----NEEADEEDDE 156
+YEK++ AY K +S A P NE DEE++E
Sbjct: 154 KYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
Score = 102 (41.0 bits), Expect = 0.00041, P = 0.00041
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K+ +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
+A+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 LAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 60/93 (64%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M+ YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
++A DK RYD EM++Y PP G K+GK K N
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGNKKGKKKDPN 93
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 42/140 (30%), Positives = 68/140 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + +K K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARY----DREMKNYVPPKGNKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRSVAPVNEE 149
+YEK++ AY+ + + V ++
Sbjct: 154 KYEKDIAAYRAKGKSEVGKK 173
Score = 101 (40.6 bits), Expect = 0.00060, P = 0.00060
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 146 QKAAKLKEKYEKDIAAYRAKGKSEVGK 172
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 304 (112.1 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/159 (32%), Positives = 77/159 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSSKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ + K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKE 151
Query: 130 RYEKEMTAYKNRS----------VA--PVNEEADEEDDE 156
+YEK++ YK++ VA V EE +EE++E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEE 190
Score = 112 (44.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
Score = 44 (20.5 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 83 GEKRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
GE + + + V AK K DV D K K++ K A+ ++ +
Sbjct: 128 GEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFD--GAKGPAKVARKKVEEEEE 185
Query: 142 SVAPVNEEADEEDDE 156
EE +EE+DE
Sbjct: 186 EEEEEEEEEEEEEDE 200
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 59/93 (63%), Positives = 72/93 (77%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHK KHP+ +V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
++A DK RYD EM++Y PP G+K+GK K N
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPN 93
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 38 FAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 93
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 94 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 130 RYEKEMTAYKNRSVAPVNEE 149
YEK++ AY+ + + V ++
Sbjct: 154 EYEKDIAAYRAKGKSEVGKK 173
Score = 101 (40.6 bits), Expect = 0.00060, P = 0.00060
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 65 DKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQ 122
D +K R +M SY R + K +P+ V + +K+ ++W + K+K+E
Sbjct: 5 DPNKPR--GKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 123 MAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
+A+ DKARY++EM Y V P ++ ++ D
Sbjct: 63 LAKSDKARYDREMKNY----VPPKGDKKGKKKD 91
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 302 (111.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 52/158 (32%), Positives = 77/158 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W +++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKE 151
Query: 130 RYEKEMTAYKNR-----SVAPVN------EEADEEDDE 156
+YEK++ YK++ + P EE DEE++E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEE 189
Score = 111 (44.1 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
Score = 43 (20.2 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 102 AKELGKKWA-DV-DPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE 156
A +L +K+ DV D K K++ K A+ ++ ++ EE +EE+DE
Sbjct: 146 AAKLKEKYEKDVADYKSKGKFD--GAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE 200
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 100 (40.3 bits), Expect = 0.00088, P = 0.00088
Identities = 34/133 (25%), Positives = 61/133 (45%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ +A+ F R + K +HP ++ + +KK E W + +K+ +
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYE 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
+ A K K++Y+ ++ +Y R K K D + GV K KK + D + E
Sbjct: 146 KKAAKLKEKYEKDIAAY-------RAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 198
Query: 122 QMAEKDKARYEKE 134
+ E++ E+E
Sbjct: 199 EEEEEEDEDEEEE 211
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIPAYR 163
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIPAYR 163
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/124 (29%), Positives = 59/124 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEK 133
+YEK
Sbjct: 154 KYEK 157
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/124 (29%), Positives = 59/124 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEK 133
+YEK
Sbjct: 154 KYEK 157
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEK 154
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 71/154 (46%), Positives = 89/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKEK 154
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/114 (27%), Positives = 53/114 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQM 123
PP+ E R KIK ++P +GD+AK+LG+ W + K YE++
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKI 147
Score = 110 (43.8 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 70/154 (45%), Positives = 88/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+E SKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEK 154
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 38/123 (30%), Positives = 59/123 (47%)
Query: 23 CREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA 82
C E K +E F + +K R+ E+E K + + KK++ PP+
Sbjct: 45 CSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPNAPKRPPS 100
Query: 83 G------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMT 136
E R KIK ++P +GD+AK+LG+ W + K YE+ A K K +YEK+
Sbjct: 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDTA 160
Query: 137 AYK 139
AY+
Sbjct: 161 AYR 163
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 70/154 (45%), Positives = 88/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+E SKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEK 154
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 38/123 (30%), Positives = 59/123 (47%)
Query: 23 CREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPA 82
C E K +E F + +K R+ E+E K + + KK++ PP+
Sbjct: 45 CSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPNAPKRPPS 100
Query: 83 G------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMT 136
E R KIK ++P +GD+AK+LG+ W + K YE+ A K K +YEK+
Sbjct: 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDTA 160
Query: 137 AYK 139
AY+
Sbjct: 161 AYR 163
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 57/93 (61%), Positives = 71/93 (76%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ C+EEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 37/130 (28%), Positives = 61/130 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPP------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP E R KIK ++P +GD+ K+LG+ W + K E+ A K K
Sbjct: 94 APKRPPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY + + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 70/154 (45%), Positives = 88/154 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEH KKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P------------EYGVGDIAKELGK 107
+MA DK RY+ EM++Y PP GE + K K N P EY + G
Sbjct: 61 EDMAKVDKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 108 KWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + A DK YEK+ K +
Sbjct: 121 SIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEK 154
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKVDKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 57/90 (63%), Positives = 70/90 (77%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 129 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 188
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIK 90
+MA DK RY+ EM++Y PP GE + K K
Sbjct: 189 EDMAKADKARYEREMKTYIPPKGETKKKFK 218
Score = 121 (47.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 49 WKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELG 106
W T+ E+ + + M D K+ +M SY R + K+ +P+ V + +K+
Sbjct: 116 WATLCLAEENQLN-MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS 174
Query: 107 KKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
++W + K K+E MA+ DKARYE+EM Y
Sbjct: 175 ERWKTMSAKEKGKFEDMAKADKARYEREMKTY 206
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 57/93 (61%), Positives = 70/93 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K K RG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E KIK ++P +GD+AK+LG+ W + K E+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 112 (44.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 57/93 (61%), Positives = 70/93 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K K RG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E KIK ++P +GD+AK+LG+ W + K E+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
Score = 112 (44.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K+
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 70/157 (44%), Positives = 91/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 19 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 78
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
EMA DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 79 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 138
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y N++ A + E+ +++
Sbjct: 139 GDVAKKLGEMWNNLSDSEKQPYNNKA-AKLKEKYEKD 174
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/158 (33%), Positives = 76/158 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 56 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 110
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ S K Y A K K
Sbjct: 111 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKE 169
Query: 130 RYEKEMTAYKNR-----SVAPVN------EEADEEDDE 156
+YEK++ YK++ + P EE DEED+E
Sbjct: 170 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEE 207
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 70/157 (44%), Positives = 91/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
EMA DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISI 120
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y N++ A + E+ +++
Sbjct: 121 GDVAKKLGEMWNNLSDSEKQPYINKA-AKLKEKYEKD 156
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/158 (34%), Positives = 76/158 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKE 151
Query: 130 RYEKEMTAYKNRS-------VAPVN----EEADEEDDE 156
+YEK++ YK++ A V EE DEED+E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEE 189
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 70/157 (44%), Positives = 91/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
EMA DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 120
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y N++ A + E+ +++
Sbjct: 121 GDVAKKLGEMWNNLSDSEKQPYINKA-AKLKEKYEKD 156
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 52/154 (33%), Positives = 74/154 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKE 151
Query: 130 RYEKEMTAYKNRSV-------APVNEEADEEDDE 156
+YEK++ YK++ A V + EEDDE
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEDDE 185
>UNIPROTKB|F1LY72 [details] [associations]
symbol:F1LY72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
Length = 203
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 64/147 (43%), Positives = 91/147 (61%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
KE KPRG+M++YAFFVQ C +EHKKK P+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 3 KENLKKPRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFEN 62
Query: 63 MADKDKKRYDTEMQSYTPPAGEK----------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ DK Y+T+ + P A E K K ++P+ +GD+AK+LG W +
Sbjct: 63 IGKADKAHYETKKKFKDPSAPEPPSAFLFCSRYHSKTKGEHPDLSIGDVAKKLGLMWNNT 122
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYK 139
K ++ A K K ++EK++ AY+
Sbjct: 123 AEDDKQPIKKKAFKLKEKFEKDI-AYR 148
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 64/147 (43%), Positives = 91/147 (61%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
KE KPRG+M++YAFFVQ C +EHKKK P+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 3 KENLKKPRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFEN 62
Query: 63 MADKDKKRYDTEMQSYTPPAGEK----------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ DK Y+T+ + P A E K K ++P+ +GD+AK+LG W +
Sbjct: 63 IGKADKAHYETKKKFKDPSAPEPPSAFLFCSRYHSKTKGEHPDLSIGDVAKKLGLMWNNT 122
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYK 139
K ++ A K K ++EK++ AY+
Sbjct: 123 AEDDKQPIKKKAFKLKEKFEKDI-AYR 148
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 64/147 (43%), Positives = 91/147 (61%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
KE KPRG+M++YAFFVQ C +EHKKK P+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 3 KENLKKPRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFEN 62
Query: 63 MADKDKKRYDTEMQSYTPPAGEK----------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ DK Y+T+ + P A E K K ++P+ +GD+AK+LG W +
Sbjct: 63 IGKADKAHYETKKKFKDPSAPEPPSAFLFCSRYHSKTKGEHPDLSIGDVAKKLGLMWNNT 122
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYK 139
K ++ A K K ++EK++ AY+
Sbjct: 123 AEDDKQPIKKKAFKLKEKFEKDI-AYR 148
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 69/157 (43%), Positives = 90/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
EMA DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISI 120
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y ++ A + E+ +++
Sbjct: 121 GDVAKKLGEMWNNLSDSEKQPYMTKA-AKLKEKYEKD 156
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 53/159 (33%), Positives = 77/159 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSSKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKE 151
Query: 130 RYEKEMTAYKNRS----------VA--PVNEEADEEDDE 156
+YEK++ YK++ VA V EE +EE++E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEE 190
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 56/93 (60%), Positives = 69/93 (74%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKC 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y P GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPHKGETKKKFKDPN 93
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 40/124 (32%), Positives = 61/124 (49%)
Query: 26 EHKKKHPEE-NVVFAEFSKKC---AERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPP 81
E KK E + A+ KC A+ K E+E K + + KK++ PP
Sbjct: 40 EFSKKCSERWKTMSAKEKGKCEDMAKADKARYEREMKTYIPHKGETKKKFKDPNAPKRPP 99
Query: 82 AG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEM 135
+ E R KIK ++P +GD+AK+LG+ W + K Y +MA K K +YEK++
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDI 159
Query: 136 TAYK 139
AY+
Sbjct: 160 AAYR 163
Score = 107 (42.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 36/133 (27%), Positives = 62/133 (46%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ +A+ F R + K +HP ++ + +KK E W + +K+ +
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWTNTAADDKQPYG 145
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
+MA K K++Y+ ++ +Y R K K D + GV K KK + D + E
Sbjct: 146 KMAAKLKEKYEKDIAAY-------RAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEE 198
Query: 122 QMAEKDKARYEKE 134
+ EK+ E+E
Sbjct: 199 EEEEKEDEDEEEE 211
Score = 105 (42.0 bits), Expect = 0.00015, P = 0.00015
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
M D K+ +M SY R + K+ +P+ V + +K+ ++W + K K
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKC 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E MA+ DKARYE+EM Y
Sbjct: 61 EDMAKADKARYEREMKTY 78
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 47/155 (30%), Positives = 72/155 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSSKEKAKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKAR 130
P A E R KIK NP +GD+AK+LG+ W ++ K Y A K K +
Sbjct: 93 PKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEK 152
Query: 131 YEKEMTAYKNR---------SVAPVNEEADEEDDE 156
YEK++ YK++ + ++ +EED+E
Sbjct: 153 YEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEE 187
Score = 111 (44.1 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 56/93 (60%), Positives = 69/93 (74%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M+++AFFVQ CREEHKKKH +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 1 MGKGYPKKPRGKMSSHAFFVQTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK RY+ EM++Y PP GE + K K N
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPN 93
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K E+ A K K
Sbjct: 94 ALKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKE 153
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 154 KYEKDIAAYR 163
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 52/158 (32%), Positives = 77/158 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W +++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKE 151
Query: 130 RYEKEMTAYKNR-----SVAPVN------EEADEEDDE 156
+YEK++ YK++ + P EE DEE++E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEE 189
Score = 111 (44.1 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 50/155 (32%), Positives = 77/155 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W +++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKE 151
Query: 130 RYEKEMTAYKNR-----SVAPVN---EEADEEDDE 156
+YEK++ YK++ + P ++ +EED+E
Sbjct: 152 KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEE 186
Score = 111 (44.1 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/88 (65%), Positives = 66/88 (75%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGK 88
EMA DK RYD EM+ Y P G K+ K
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/122 (33%), Positives = 59/122 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W +++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKE 151
Query: 130 RY 131
+Y
Sbjct: 152 KY 153
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKY 120
MA D K+ +M +Y R + K+ NPE V + +K+ ++W + K+K+
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 121 EQMAEKDKARYEKEMTAY 138
++MA+ DK RY++EM Y
Sbjct: 61 DEMAKADKVRYDREMKDY 78
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 278 (102.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 48/74 (64%), Positives = 58/74 (78%)
Query: 20 VQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79
+ CREEHKKKHP+ +V FAEFSKKC+ERWKTMS KEK +F +MA DK RYD EM++Y
Sbjct: 9 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV 68
Query: 80 PPAGEKRGKIKQDN 93
PP G+K+GK K N
Sbjct: 69 PPKGDKKGKKKDPN 82
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/161 (32%), Positives = 75/161 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF-HEMADKDKKRYDTE 74
+A F + C E K +E F + +K R+ ++E K + DK K+ D
Sbjct: 27 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARY----DREMKNYVPPKGDKKGKKKDPN 82
Query: 75 MQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
P A E R KIK ++P +GD AK+LG+ W++ K YEQ A K K
Sbjct: 83 APKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 142
Query: 130 RYEKEMTAY--KNRSVA-------PV-----NEEADEEDDE 156
+YEK++ AY K +S A P NE DEE++E
Sbjct: 143 KYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 183
Score = 103 (41.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +A+ F R + K +HP ++ + +KK E W S K+K+ +
Sbjct: 77 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAKDKQPYE 134
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGK 88
+ A K K++Y+ ++ +Y + GK
Sbjct: 135 QKAAKLKEKYEKDIAAYRAKGKSEAGK 161
Score = 100 (40.3 bits), Expect = 0.00067, P = 0.00067
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 86 RGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143
R + K+ +P+ V + +K+ ++W + K+K+E MA+ DKARY++EM Y V
Sbjct: 13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY----V 68
Query: 144 APVNEEADEEDD 155
P ++ ++ D
Sbjct: 69 PPKGDKKGKKKD 80
Score = 39 (18.8 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 116 VKTKYEQMAEKDKARYEKEM--------TAYKNRSVAPVNEEADEEDDE 156
+K KYE+ +A+ + E T K ++ EE +EE+DE
Sbjct: 140 LKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDE 188
Score = 34 (17.0 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 139 KNRSVAPVNEEADEEDDE 156
KN EE +E++DE
Sbjct: 173 KNEPEDEEEEEEEEDEDE 190
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 68/157 (43%), Positives = 91/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AY+FFVQ CREEHKKK+PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
E+A DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 61 DEIAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISI 120
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y N++ A + E+ +++
Sbjct: 121 GDVAKKLGEMWNNLSDSEKQPYINKA-AKLKEKYEKD 156
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 51/154 (33%), Positives = 75/154 (48%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 38 FAEFSKKCSERWKTMSGKEKSKFDEIAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 92
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ S K Y A K K
Sbjct: 93 PK-RPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKE 151
Query: 130 RYEKEMTAYKNRS-------VAPVNEEADEEDDE 156
+YEK++ YK++ A V ++ EE+DE
Sbjct: 152 KYEKDVADYKSKGKFDGAKGAAKVAQKKVEEEDE 185
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 54/93 (58%), Positives = 68/93 (73%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KPRG+M++YAFFVQ CREEHKKKH + +V F+EFS KC+ERWKTMS KEK +F
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK Y+ +M++Y PP GE + K K N
Sbjct: 61 EDMAKADKTHYERQMKTYIPPKGETKKKFKDPN 93
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 46/162 (28%), Positives = 73/162 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F C E K +E F + +K A+ KT E++ K + + KK++
Sbjct: 38 FSEFSNKCSERWKTMSAKEKGKFEDMAK--AD--KTHYERQMKTYIPPKGETKKKFKDPN 93
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E KIK ++P +GD+AK+LG+ W + K E+ A K K
Sbjct: 94 APKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKE 153
Query: 130 RYEKEMTAYK---------------NRSVAPVNEEADEEDDE 156
+YEK++ AY+ +S EE DEED+E
Sbjct: 154 KYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEE 195
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/89 (62%), Positives = 69/89 (77%)
Query: 8 KPRGRMTAY-AFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADK 66
KPRG+M++Y AFFVQ CREEHKKKH + +V F+EFSKKC+ERWKTMS KEK +F +MA
Sbjct: 8 KPRGKMSSYYAFFVQTCREEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 67
Query: 67 DKKRYDTEMQSYTPPAGEKRGKIKQ-DNP 94
DK RY+ EM++Y PP GE + K K D P
Sbjct: 68 DKARYEREMKTYIPPKGETKKKFKDPDAP 96
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 37/130 (28%), Positives = 60/130 (46%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 39 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPD 94
Query: 76 QSYTPP------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP E KIK ++P +GD+AK+LG+ W + K E+ A K K
Sbjct: 95 APRRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKE 154
Query: 130 RYEKEMTAYK 139
+YEK+ AY+
Sbjct: 155 KYEKDNAAYR 164
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 69/157 (43%), Positives = 90/157 (57%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKK +PE V FAEFSKKC+ERWKTMS KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKF 59
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQ--DNPEYGVGDIAKELGKKWADVDP--SV 116
EMA DK RYD EM+ Y P G K+ K P G E K +P S+
Sbjct: 60 DEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 119
Query: 117 KTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+++ E + E Y N++ A + E+ +++
Sbjct: 120 GDVAKKLGEMWNNLSDGEKQPYNNKA-AKLKEKYEKD 155
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 48/156 (30%), Positives = 74/156 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + A KK+ D
Sbjct: 37 FAEFSKKCSERWKTMSSKEKAKFDEMAK--AD--KVRYDREMKDYGP-AKGGKKKKDPNA 91
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E R KIK NP +GD+AK+LG+ W ++ K Y A K K
Sbjct: 92 PK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKE 150
Query: 130 RYEKEMTAYKNR---------SVAPVNEEADEEDDE 156
+YEK++ YK++ + ++ +EED+E
Sbjct: 151 KYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEE 186
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 57/117 (48%), Positives = 74/117 (63%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+AYAFFVQ CREEHKKK+P+ + FAEFSKKC+ERWKTMS+KEK +F
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 HEMADKDKKRYDTEMQSYTPP-AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSV 116
+E+A DK YD E++ Y P G+K+ P G E K +P +
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 48/154 (31%), Positives = 73/154 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K ++E K + K K+ D
Sbjct: 38 FAEFSKKCSERWKTMSKKEKSKFNELAK--AD--KVHYDQEIKDYGPA--KGGKKKDPNA 91
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+G E K K NP +GD+AK+LG+ W +++ S K Y A K K
Sbjct: 92 PK-RPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKE 150
Query: 130 RYEKEMTAYKNRSV-------APVNEEADEEDDE 156
+YEK++ YK++ A V ++ EE+DE
Sbjct: 151 KYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDE 184
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 66/151 (43%), Positives = 82/151 (54%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+G+M AYAFFVQ+CREEHKKK+ E V FAEFSKKC+ERWKTMS KEK +F EMA
Sbjct: 8 KPKGKMCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAKAY 67
Query: 68 KKRYDTEMQSYTPPAGEKRGKIKQDN--PEYGVGDIAKELGKKWADVDP--SVKTKYEQM 123
K YD EM+ Y P G K+ K P G E K P S++ +++
Sbjct: 68 KMHYDQEMKDYGPARGGKKKDPKAPKRLPS-GCLLFCSEFHPKIKSTHPGISIRDVAKKL 126
Query: 124 AEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
E + E Y N++ E D D
Sbjct: 127 GEMWNNLSDSEKQPYINKAAKLKKYEKDAAD 157
Score = 117 (46.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 48/173 (27%), Positives = 74/173 (42%)
Query: 1 MPKEKDVKPRGRMTA-YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
M +E+ K + +A F + C E K +E F E +K +K ++E K
Sbjct: 22 MCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAKA----YKMHYDQEMKD 77
Query: 60 FHEMADKDKKRYDTEMQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
+ KK D + P E KIK +P + D+AK+LG+ W ++
Sbjct: 78 YGPARGGKKK--DPKAPKRLPSGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSD 135
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYKNR-----SVAPVN------EEADEEDDE 156
S K Y A K K +YEK+ +K+R + P EE D+ED+E
Sbjct: 136 SEKQPYINKAAKLK-KYEKDAADHKSRGKFDGTKGPAKVAGKMVEEEDKEDEE 187
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 63/149 (42%), Positives = 84/149 (56%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR- 59
M K KPRG+M +YAFFVQ CREEHKK+H + +V F+EFSKKC+ERWKTMS KE +
Sbjct: 1 MGKGDPKKPRGKMLSYAFFVQTCREEHKKQHSDASVNFSEFSKKCSERWKTMSAKENRGI 60
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQD-NPEY-GVGDIAKEL-----GKKWADV 112
F +M K Y+ EM++Y PP GE + K K+ P + + ++ G DV
Sbjct: 61 FEDMTKAGKASYEREMKTYLPP-GETKKKFKEPIAPSFLFCSEYCPKIKDEHPGLSIGDV 119
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+ + A DK YEKE K +
Sbjct: 120 TKKLGETWSNTAVNDKQPYEKEAAKLKEK 148
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/125 (28%), Positives = 62/125 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENV-VFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTE 74
++ F + C E K +EN +F + +K K E+E K + + KK +
Sbjct: 38 FSEFSKKCSERWKTMSAKENRGIFEDMTKA----GKASYEREMKTYLPPGETKKKFKEPI 93
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
S+ E KIK ++P +GD+ K+LG+ W++ + K YE+ A K K + EK+
Sbjct: 94 APSFLF-CSEYCPKIKDEHPGLSIGDVTKKLGETWSNTAVNDKQPYEKEAAKLKEKCEKD 152
Query: 135 MTAYK 139
+ AY+
Sbjct: 153 IAAYR 157
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 216 (81.1 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 20 VQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79
V C EEHKKK+P+ +V F+EF KKC+E WKT+ KEK +F +MA DK Y+ EM++Y
Sbjct: 695 VDPC-EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYI 753
Query: 80 PPAGEKRGKIKQDN 93
PP GEK+ K K N
Sbjct: 754 PPKGEKKKKFKDPN 767
Score = 125 (49.1 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 36/130 (27%), Positives = 62/130 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F++ C E K +E F + +K A+ K E+E K + + KK++
Sbjct: 712 FSEFLKKCSETWKTIFAKEKGKFEDMAK--AD--KAHYEREMKTYIPPKGEKKKKFKDPN 767
Query: 76 QSYTPP------AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP E R KIK ++P + D+ K+L W + + K YE+ A K K
Sbjct: 768 APKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKE 827
Query: 130 RYEKEMTAYK 139
+Y+K++ AY+
Sbjct: 828 KYKKDIAAYR 837
Score = 98 (39.6 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK---- 139
E R KIK ++P + D+ K+L W + + K YE+ A K K +Y+K++ AY+
Sbjct: 782 EYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGK 841
Query: 140 -----------NRSVAPVNEEADEEDDE 156
+S EE DEED++
Sbjct: 842 PNSAKKRVVKAEKSKKKKEEEEDEEDEQ 869
Score = 42 (19.8 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE 156
K++ A P+ K AEK K + E+E + EE +EEDD+
Sbjct: 831 KDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQ------EEENEEDDD 878
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 63/152 (41%), Positives = 86/152 (56%)
Query: 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
PK+ VK + +YAFFVQ +EEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F
Sbjct: 6 PKQLKVK----LNSYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN----P--------EYGVGDIAKELGKKW 109
++A DK Y+ EM++Y P GE + K K N P EY + G
Sbjct: 62 DVAKADKAHYEREMKTYISPKGETKKKFKDPNVHKRPLLVFLFCSEYCPKIKGEHPGLSI 121
Query: 110 ADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
DV + + +A ++K YEK+ T K +
Sbjct: 122 GDVVTKLGEMWNNIAMENKQPYEKKATNLKEK 153
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/127 (26%), Positives = 58/127 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K A+ K E+E K + + KK++
Sbjct: 38 FSEFSKKCSERWKTMSAKEKGKFEDVAK--AD--KAHYEREMKTYISPKGETKKKFKDPN 93
Query: 76 QSYTPP-----AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKAR 130
P E KIK ++P +GD+ +LG+ W ++ K YE+ A K +
Sbjct: 94 VHKRPLLVFLFCSEYCPKIKGEHPGLSIGDVVTKLGEMWNNIAMENKQPYEKKATNLKEK 153
Query: 131 YEKEMTA 137
YEK++ A
Sbjct: 154 YEKDIAA 160
>UNIPROTKB|F1LTL3 [details] [associations]
symbol:F1LTL3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00562366 Ensembl:ENSRNOT00000048766 Uniprot:F1LTL3
Length = 168
Score = 194 (73.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 15 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTE 74
+YAFFVQ EEHKK HP+ +V F+EFSKKCAERWKT+S KE+++F ++A DK Y E
Sbjct: 14 SYAFFVQTYHEEHKK-HPDASVNFSEFSKKCAERWKTVSAKERRKFEDVAKVDKAPYARE 72
Query: 75 MQSYTPPAGEK 85
++ +K
Sbjct: 73 FTLHSQRGDQK 83
Score = 88 (36.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
E KIK ++P +GD+AK+LG+ W + ++ A K K + + + AY+ R
Sbjct: 102 EDHPKIKGEHPGLSIGDVAKKLGEMWTTATDDRQPYEKRKAAKLKEKAKGNLAAYRER 159
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 61/144 (42%), Positives = 86/144 (59%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEK-KRFHEMADK 66
KPRG+M +YAFF Q C E+HK++H + +V F+EFSKKC+ERWKTMS KEK KR
Sbjct: 8 KPRGKMPSYAFFTQPCWEKHKQQH-DASVNFSEFSKKCSERWKTMSAKEKGKRRLTRVVI 66
Query: 67 DKKRYDTEMQSYTPPAGEKRG-----------KIKQDNPEYGVGDIAKELGKKWADVDPS 115
+ E + + P+ KR +IK ++P +GD+AK+LG+ W D
Sbjct: 67 NLHPSKGETKKFKDPSAPKRPLSLFSFCSEYPQIKGEHPGLSIGDVAKKLGEMWNSTDTD 126
Query: 116 VKTKYEQMAEKDKARYEKEMTAYK 139
K Y +MA K K +YEK++ AY+
Sbjct: 127 -KQPYGKMAAKLKEKYEKDIAAYR 149
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 238 (88.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+G++++Y FFVQ EEHKK+HP+ +V F+EFSKKC+ERWKTM KE ++ +MA DK
Sbjct: 17 PKGKVSSYTFFVQTW-EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAKADK 75
Query: 69 KRYDTEMQSYTPPAGEKRGKIKQDN 93
++ EM++Y P GE + + K N
Sbjct: 76 AHHEREMKTYILPKGETKKRFKDPN 100
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 39/129 (30%), Positives = 61/129 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +EN + + +K A+ K E+E K + + KKR+
Sbjct: 45 FSEFSKKCSERWKTMCAKENGKYEDMAK--AD--KAHHEREMKTYILPKGETKKRFKDPN 100
Query: 76 QSYTPPAG-----EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKAR 130
PP+ + R KIK +P +GD+AK LG+ W K E+ A K K
Sbjct: 101 ALKRPPSAFLFCSDHRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKET 160
Query: 131 YEKEMTAYK 139
YEK++ AY+
Sbjct: 161 YEKDIAAYR 169
Score = 41 (19.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 111 DVDPSVK--TKYEQMAEKDKARYEKE----------MTAYKN-RSVAPVNEEADEEDD 155
D PS K TK ++ EKD A Y + + A K+ + +EE +EEDD
Sbjct: 146 DKQPSEKKATKLKETYEKDIAAYRAKGKPDAVKKGVVKAEKSEKKKEEKDEEEEEEDD 203
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 60/156 (38%), Positives = 81/156 (51%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K KP+G+M+A+AFFVQ+CR++HKK P+ V FAEFSKKC+ERWKTMS KEK F
Sbjct: 1 MAKGDPEKPKGKMSAHAFFVQMCRKKHKKT-PKVPVNFAEFSKKCSERWKTMSGKEKSTF 59
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP--SVKT 118
EMA DK Y+ EM+ Y G K+ P G E + +P S+
Sbjct: 60 DEMAKADKVHYNQEMKDYGSAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGD 119
Query: 119 KYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
+++ E + + Y N+ E D D
Sbjct: 120 VAKKLGEMWNNLSDSKKQLYVNKDAKLKKYEKDVAD 155
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 50/158 (31%), Positives = 72/158 (45%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
+A F + C E K +E F E +K A+ K +E K + A KK +
Sbjct: 37 FAEFSKKCSERWKTMSGKEKSTFDEMAK--AD--KVHYNQEMKDYGS-AKGGKKDPNAPK 91
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
+ PP+G E +IK NP +GD+AK+LG+ W ++ S K Y K K
Sbjct: 92 R---PPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAKLK- 147
Query: 130 RYEKEMTAYKNR---SVAP-------VNEEAD-EEDDE 156
+YEK++ YK + P V EE D EE+DE
Sbjct: 148 KYEKDVADYKGEFDGTKGPAKVVQKKVEEEEDKEEEDE 185
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 44/92 (47%), Positives = 65/92 (70%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
+ KD + P+G++++Y FFVQ EEHKK+HP+ +V F+EFSKKC+ERWKTM KE ++
Sbjct: 2 RAKDPQNPKGKVSSYTFFVQTW-EEHKKQHPDASVNFSEFSKKCSERWKTMCAKENGKYE 60
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
+MA DK ++ EM++Y P GE + + K N
Sbjct: 61 DMAKADKAHHEREMKTYILPKGETKKRFKDPN 92
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 39/129 (30%), Positives = 61/129 (47%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +EN + + +K A+ K E+E K + + KKR+
Sbjct: 37 FSEFSKKCSERWKTMCAKENGKYEDMAK--AD--KAHHEREMKTYILPKGETKKRFKDPN 92
Query: 76 QSYTPPAG-----EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKAR 130
PP+ + R KIK +P +GD+AK LG+ W K E+ A K K
Sbjct: 93 ALKRPPSAFLFCSDHRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKET 152
Query: 131 YEKEMTAYK 139
YEK++ AY+
Sbjct: 153 YEKDIAAYR 161
>WB|WBGene00001972 [details] [associations]
symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IGI] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
Length = 235
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/96 (48%), Positives = 64/96 (66%)
Query: 2 PKEKDVKP-RGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
P++ P RG+ + Y FFV++C EEHKKK+P ENV E SKKC+E+WKTM + EK+RF
Sbjct: 37 PRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRF 96
Query: 61 HEMADKDKKRYDTEMQSYTPPAGE----KRGKIKQD 92
+E+A KD +RY E+ S GE KR + K+D
Sbjct: 97 YELAQKDAERYQAEV-SVAAYGGEDAMRKRKRAKKD 131
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 23 CREEHKKKHPEENVVFAEFSKKCAERWKT------MSEKEKKRFHEMADKDKKRYDTEMQ 76
C E+ K +E F E ++K AER++ ++ R + A KD +
Sbjct: 81 CSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALS 140
Query: 77 SYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMT 136
++ + +KR +I+ +P++ VG +A+ELGK W V K YEQ A+ DK RY EM
Sbjct: 141 AFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR 200
Query: 137 AYK 139
YK
Sbjct: 201 NYK 203
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/128 (42%), Positives = 76/128 (59%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++Y FF EEH+KKHP+ V F EFSKKC+ERWKTMS KEK F MA K
Sbjct: 8 KPRGKMSSYTFFGG---EEHEKKHPDAFVNFLEFSKKCSERWKTMSAKEKGEFENMA-KA 63
Query: 68 KKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKD 127
K R++ EM++Y P GE + K++ + + L ++ P +K ++ ++ D
Sbjct: 64 KARHEREMKTYISPKGETKEKVRDPSAPKRLPSAFFLLCSEYR---PKIKGEHPGLSIGD 120
Query: 128 KARYEKEM 135
AR EM
Sbjct: 121 VARKLGEM 128
Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
+E + K + F + C E K +E F +K K E+E K +
Sbjct: 22 EEHEKKHPDAFVNFLEFSKKCSERWKTMSAKEKGEFENMAKA-----KARHEREMKTYIS 76
Query: 63 MADKDKKRY-DTEMQSYTPPA-----GEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSV 116
+ K++ D P A E R KIK ++P +GD+A++LG+ W +
Sbjct: 77 PKGETKEKVRDPSAPKRLPSAFFLLCSEYRPKIKGEHPGLSIGDVARKLGEMWNNTAADD 136
Query: 117 KTKYEQMAEKDKARYEKEMTAYK 139
K E+ A K K +YEK++ AY+
Sbjct: 137 KQPCEKAA-KLKEKYEKDIAAYR 158
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 48/119 (40%), Positives = 61/119 (51%)
Query: 36 VVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDN-P 94
V F+EFSKKC+ERWKTMS KEK +F +MA DK RY+ EM++Y PP GE + K K N P
Sbjct: 1 VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 60
Query: 95 ------------EYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
EY + G DV + + A DK YEK+ K +
Sbjct: 61 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 119
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 16 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEM 75
++ F + C E K +E F + +K R+ E+E K + + KK++
Sbjct: 3 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY----EREMKTYIPPKGETKKKFKDPN 58
Query: 76 QSYTPPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKA 129
PP+ E R KIK ++P +GD+AK+LG+ W + K YE+ A K K
Sbjct: 59 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 118
Query: 130 RYEKEMTAYK 139
+YEK++ AY+
Sbjct: 119 KYEKDIAAYR 128
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/95 (35%), Positives = 59/95 (62%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M KE +KP+ +++Y F+ R + K++ P V F EFS+KC+E+W+++S+ EK ++
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPE 95
+A DK RY EM +Y G+++ + K+D E
Sbjct: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQE 92
Score = 108 (43.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 86 RGKIKQDNPEYGVG--DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
R K K+ P VG + +++ +KW + K KYE +A+ DKARY++EM Y
Sbjct: 24 RNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNY 78
Score = 105 (42.0 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 33/128 (25%), Positives = 62/128 (48%)
Query: 25 EEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE-MAD---KDKKRYDTEMQS-YT 79
+E +K E+ + SK +++ +++ +K R+ E M + K KKR + Q
Sbjct: 39 KEFSRKCSEK---WRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRR 95
Query: 80 PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEK 133
PP+ + ++K++NP + V +AK GK W+ K YEQ +A+Y +
Sbjct: 96 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFE 155
Query: 134 EMTAYKNR 141
E+ Y+ +
Sbjct: 156 ELELYRKQ 163
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 32/90 (35%), Positives = 59/90 (65%)
Query: 4 EKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
EKD ++P+ +++Y F+ R + K++ P + F EFS+KC+E+W+++S+ EK ++
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQD 92
+A+ DK RY EM +Y G++R + K+D
Sbjct: 63 LAELDKARYQQEMMNYI---GKRRKRRKRD 89
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/128 (28%), Positives = 67/128 (52%)
Query: 25 EEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH-EMAD---KDKKRYDTEMQS-YT 79
+E +K E+ + SK +++ ++E +K R+ EM + K +KR + ++
Sbjct: 39 KEFSRKCSEK---WRSISKHEKAKYEALAELDKARYQQEMMNYIGKRRKRRKRDPKAPRK 95
Query: 80 PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEK 133
PP+ + +KQ+NP++ V +AK GK W+ D + K YEQ A +A+Y +
Sbjct: 96 PPSSFLLFSRDHYAMLKQENPDWTVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFE 155
Query: 134 EMTAYKNR 141
E AY+N+
Sbjct: 156 EQEAYRNQ 163
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPE-Y-GVGDIAKELGKKWADVDPSVKTKY 120
M +KD+ R + SY R K K+ P Y G + +++ +KW + K KY
Sbjct: 1 MGEKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 121 EQMAEKDKARYEKEMTAY 138
E +AE DKARY++EM Y
Sbjct: 61 EALAELDKARYQQEMMNY 78
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 1 MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRF 60
M K +KP+ +++Y F+ R + K++ P + F EFS+KC+E+W+++S+ EK ++
Sbjct: 1 MGKRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 HEMADKDKKRYDTEMQSYTPPAGEKRGKIKQD 92
+A DK RY EM +Y G ++ + K+D
Sbjct: 61 EALAKLDKARYQEEMMNYF---GRRKKRRKRD 89
Score = 115 (45.5 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 63 MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPE-Y-GVGDIAKELGKKWADVDPSVKTKY 120
M +D+ + + SY R K K+ P Y G + +++ +KW + K KY
Sbjct: 1 MGKRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 121 EQMAEKDKARYEKEMTAYKNR 141
E +A+ DKARY++EM Y R
Sbjct: 61 EALAKLDKARYQEEMMNYFGR 81
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/131 (27%), Positives = 67/131 (51%)
Query: 25 EEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE-MAD---KDKKRYDTEMQS-YT 79
+E +K E+ + SK +++ +++ +K R+ E M + + KKR + +
Sbjct: 39 KEFSRKCSEK---WRSISKHEKAKYEALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRR 95
Query: 80 PPAG------EKRGKIKQDNPEYGVGDIAKELGKKWA---DVDPSVKTKYEQMAEKDKAR 130
PP+ + ++K +NP + V +AK GK W+ DVD K YEQ A +A+
Sbjct: 96 PPSSFLLFCQDHYAQLKSENPSWSVVQVAKASGKMWSAKTDVD---KQPYEQRAALLRAK 152
Query: 131 YEKEMTAYKNR 141
Y +E++ Y+N+
Sbjct: 153 YREELSVYRNQ 163
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 155 (59.6 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 43/156 (27%), Positives = 78/156 (50%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ +AY + R E K E+ A+ +KK +WKTMS +KK++
Sbjct: 549 KDKDPNAPKRATSAYMQWFLASRNELK----EDGDSVADVAKKGGAKWKTMSSDDKKKWE 604
Query: 62 EMADKDKKRYDTEMQSYT---PPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKT 118
E A++DK RY+ EM+ Y PP+ + + + + +K + K++ + S +
Sbjct: 605 EKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEY--ISDSDDS 662
Query: 119 KYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
E+ +K+K KE + N + ++E+D+ D
Sbjct: 663 DDEEPKKKEKKAAPKEESEESNNG-SDGSDESDDSD 697
Score = 133 (51.9 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 42 SKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEK-----RGKIKQDNPEY 96
SK+ K EK++KR + K KK D A + R ++K+D
Sbjct: 522 SKRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDS- 580
Query: 97 GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
V D+AK+ G KW + K K+E+ AE+DK+RYEKEM Y+
Sbjct: 581 -VADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYR 622
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 155 (59.6 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 52/166 (31%), Positives = 81/166 (48%)
Query: 3 KEKDV-KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD KP+ TA+ ++ RE K+++P + E +KK E WK + K+K ++
Sbjct: 548 KKKDSGKPKRATTAFMLWLNDTRESIKRENP--GIKVTEIAKKGGEMWKEL--KDKSKWE 603
Query: 62 EMADKDKKRYDTEMQSYTPPAG-----EKRGKI-KQDNPEYGVGDIAKELG-----KKWA 110
+ A KDK+RY EM++Y P AG EK GK K+ E A G K++
Sbjct: 604 DAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYI 663
Query: 111 DVDPSVKTKYEQMAE--KDKARYEKEMTAYKNRSVAPVNEEADEED 154
D S + E+ E K K++ + A K ++ + E EED
Sbjct: 664 SDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEED 709
Score = 125 (49.1 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 42 SKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDI 101
S+K ++ K EKE+ + KD + ++ + R IK++NP V +I
Sbjct: 526 SEKKEKKEKKHKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEI 585
Query: 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
AK+ G+ W ++ K+K+E A KDK RY EM YK
Sbjct: 586 AKKGGEMWKELKD--KSKWEDAAAKDKQRYHDEMRNYK 621
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ ++AY FF R++ ++++P + F + K E+WK++S+KE+K +
Sbjct: 20 KKKDPNAPKRGLSAYMFFANDNRDKVREENP--GISFGQVGKMLGEKWKSLSDKERKPYE 77
Query: 62 EMADKDKKRYDTEMQSYTPPAGE 84
+ A DKKRY+ E +Y AGE
Sbjct: 78 DKAAADKKRYEDEKAAYK--AGE 98
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAE 125
KD + +Y A + R K++++NP G + K LG+KW + + YE A
Sbjct: 22 KDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAA 81
Query: 126 KDKARYEKEMTAYKNRSVAPVNEEA 150
DK RYE E AYK A +EE+
Sbjct: 82 ADKKRYEDEKAAYK-AGEAEEDEES 105
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 30/93 (32%), Positives = 47/93 (50%)
Query: 52 MSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWAD 111
++ +E K+ KD + +Y A E R ++ +NP+ G + K+LG+KW
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA 61
Query: 112 VDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
+ P K YE A+ DK RYE E Y N ++A
Sbjct: 62 LTPEEKQPYEAKAQADKKRYESEKELY-NATLA 93
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ ++AY FF R+ + ++P+ + F + KK E+WK ++ +EK+ +
Sbjct: 14 KKKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYE 71
Query: 62 EMADKDKKRYDTEMQSY 78
A DKKRY++E + Y
Sbjct: 72 AKAQADKKRYESEKELY 88
>SGD|S000001515 [details] [associations]
symbol:IXR1 "Protein that binds DNA intrastrand cross-links
formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
Length = 597
Score = 147 (56.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 39/137 (28%), Positives = 70/137 (51%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +AY F R E ++ PE V E SK + RWK +++ +KK F+E +
Sbjct: 361 PKRPSSAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYEEFRTNW 418
Query: 69 KRYDTEMQSYT---PP---AG-------EKRGKIKQDNPEYGVGDIAKELGKKWADVDPS 115
++Y +Y PP +G E R + ++NP+ G+ +I K +G++W ++DP+
Sbjct: 419 EKYRVVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPA 478
Query: 116 VKTKYEQMAEKDKARYE 132
K +Y + +K +E
Sbjct: 479 KKAEYTETYKKRLKEWE 495
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 40/134 (29%), Positives = 64/134 (47%)
Query: 24 REEHKKKHPEENVVFAEFSKKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPP 81
+E+ KK P++ A SK + KT++ E KR KD M +
Sbjct: 516 KEKSIKKEPKKE---ASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFF 572
Query: 82 AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+ +R IK+++P G++ K LG KW + K YE A+ DK RY+ E++ YKN
Sbjct: 573 SQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNP 632
Query: 142 SVAPVNEEADEEDD 155
P+N ++ + D
Sbjct: 633 Q--PMNVDSGNDSD 644
Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ M+ + FF Q+ R+ KK+HP + F E K ++W+ MS +K+ +
Sbjct: 555 KKKDPNAPKRAMSGFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDKWRQMSADDKEPYE 612
Query: 62 EMADKDKKRYDTEMQSYTPP 81
A DK+RY E+ Y P
Sbjct: 613 AKAQVDKQRYKDEISDYKNP 632
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 52 MSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWAD 111
M+ E+K+ KD + +Y A E R ++ +NP G + K LG+KW
Sbjct: 1 MAPGERKK-SSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKA 59
Query: 112 VDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
++ K YE AE DK RYEKE Y ++ A
Sbjct: 60 LNSEDKLPYENKAEADKKRYEKEKAEYAKKNSA 92
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ ++AY FF R+ + ++P + F + K E+WK ++ ++K +
Sbjct: 12 KKKDPDAPKRSLSAYMFFANENRDIVRAENP--GISFGQVGKLLGEKWKALNSEDKLPYE 69
Query: 62 EMADKDKKRYDTEMQSY 78
A+ DKKRY+ E Y
Sbjct: 70 NKAEADKKRYEKEKAEY 86
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 52 MSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWAD 111
M+ E+K+ KD + +Y A E R ++ +NP G + K LG+KW
Sbjct: 1 MAPGERKK-SSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKA 59
Query: 112 VDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
++ K YE AE DK RYEKE Y ++ A
Sbjct: 60 LNSEDKLPYENKAEADKKRYEKEKAEYAKKNSA 92
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD P+ ++AY FF R+ + ++P + F + K E+WK ++ ++K +
Sbjct: 12 KKKDPDAPKRSLSAYMFFANENRDIVRAENP--GISFGQVGKLLGEKWKALNSEDKLPYE 69
Query: 62 EMADKDKKRYDTEMQSY 78
A+ DKKRY+ E Y
Sbjct: 70 NKAEADKKRYEKEKAEY 86
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 40/136 (29%), Positives = 65/136 (47%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMS----EK---EKKRFH 61
P+ +AY ++Q R + K++P AE SK E+W+ + EK E+K+ +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP--AEISKIAGEKWQNLEADIKEKYISERKKLY 100
Query: 62 EMADKDKKRYDTEMQSYTP--P----AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPS 115
K KK +D ++ P P A E R ++ +P+ D+ K +G KW +D S
Sbjct: 101 SEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQS 160
Query: 116 VKTKYEQMAEKDKARY 131
+K KY Q +K Y
Sbjct: 161 IKDKYIQEYKKAIQEY 176
>DICTYBASE|DDB_G0282427 [details] [associations]
symbol:DDB_G0282427 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00184 SMART:SM00249 dictyBase:DDB_G0282427 Pfam:PF00505
EMBL:AAFI02000047 GO:GO:0046872 GO:GO:0008270 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 RefSeq:XP_640043.1 ProteinModelPortal:Q54SJ6
EnsemblProtists:DDB0220651 GeneID:8623570 KEGG:ddi:DDB_G0282427
InParanoid:Q54SJ6 OMA:YMNINRE Uniprot:Q54SJ6
Length = 795
Score = 138 (53.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 4 EKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEM 63
E V+PR ++AY ++ + RE+ K+ +P+ V ++ SK +WK ++ ++K ++E
Sbjct: 322 EAIVRPRSNVSAYFHYMNINREDEKRMNPD--VPLSDISKILGAKWKQLTPDDQKEYYEK 379
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDN 93
A +DK RY+ EM Y E Q N
Sbjct: 380 AREDKIRYENEMVLYNQKCKEVENSFPQIN 409
Score = 127 (49.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 54 EKEKKRFHEMADKDKKRYDTEMQSYTPPAGE----------KRGKIKQDNPEYGVGDIAK 103
EK+ R+ E+ KK+ + E+++ P R K+ NP+ + DI+K
Sbjct: 300 EKQIARYQELERDRKKKIEEEIEAIVRPRSNVSAYFHYMNINREDEKRMNPDVPLSDISK 359
Query: 104 ELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
LG KW + P + +Y + A +DK RYE EM Y +
Sbjct: 360 ILGAKWKQLTPDDQKEYYEKAREDKIRYENEMVLYNQK 397
Score = 41 (19.5 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 31 HPEENVVFAEFSKKCAERWKTMSEKEKK 58
H + V + + K +++W + E EKK
Sbjct: 235 HTKTLQVISSWGIKVSDKWNDVPEFEKK 262
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 43/139 (30%), Positives = 65/139 (46%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 104 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKRRYLDEADRDK 161
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK+ +QD V D KE K V D +
Sbjct: 162 ERYMRELEQYQKTEAYKVFSRKAQDRQKGKLHRQDGARQPVHDHEKEADTKERSVFDIPI 221
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 222 FT--EEFLNHSKAR-EAEL 237
Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 90 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 147
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY +E+ Y+
Sbjct: 148 EEKRRYLDEADRDKERYMRELEQYQ 172
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
++KD P+ M+A+ FF RE+ K +P+ F + +RWK ++ E++ +
Sbjct: 9 RKKDPNTPKRNMSAFMFFSIENREKMKTDNPD--ATFGQLGSLLGKRWKELTSTEREPYE 66
Query: 62 EMADKDKKRYDTEMQSY-TPPA-GEKRGK 88
E A +DK+RY+ E + Y T A GEK GK
Sbjct: 67 EKARQDKERYERERKEYDTKLANGEKTGK 95
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAE 125
KD M ++ + E R K+K DNP+ G + LGK+W ++ + + YE+ A
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70
Query: 126 KDKARYEKEMTAYKNR 141
+DK RYE+E Y +
Sbjct: 71 QDKERYERERKEYDTK 86
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 382 KGKDPNAPKRPMSAYMLWLNASREKIKADHP--GISITDLSKKAGEIWKGMSKEKKEEWD 439
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y GE KR K K+ + ++ KK S K+
Sbjct: 440 RKAEDARREYEKAMKEYEGGRGESSKRDKSKKKKK------VKVKMEKKSTPSRGSSSKS 493
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPVNEEADEEDDE 156
Q++E K++ E ++ +N+S D E++E
Sbjct: 494 SSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEE 534
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 40 EFSKKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K ++ K +++ KK KD M +Y R KIK D+P
Sbjct: 356 EKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKADHPGIS 415
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 416 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 457
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 37/134 (27%), Positives = 66/134 (49%)
Query: 26 EHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEK 85
E +KK + V + K +++ K +K KK+ + + +RY + ++ +
Sbjct: 13 ESEKKVKKTPVKKPKKEPKVSKKGKKEGKKTKKKPKD--ENAPRRYLSPFIFFSK---DH 67
Query: 86 RGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY----KNR 141
R IK +P G+I LG++WA + K KYE++A +DK R+E E Y K +
Sbjct: 68 RSVIKNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQ 127
Query: 142 SVAPVNEEADEEDD 155
S A + ++ +E D
Sbjct: 128 SQAESSSDSSDESD 141
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
PK+++ PR ++ + FF + R K HP N F E + W +S ++KK++
Sbjct: 47 PKDENA-PRRYLSPFIFFSKDHRSVIKNSHP--NCSFGEIGSLLGQEWAKISAEDKKKYE 103
Query: 62 EMADKDKKRYDTEMQSY 78
++A +DKKR++ E ++Y
Sbjct: 104 KLAAEDKKRWELEKKNY 120
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
K+ + P+ ++AY FF R+ ++++P V F + K ERWK +S+K++ +
Sbjct: 18 KKDPMAPKRGLSAYMFFANEQRDNVREENP--GVTFGQVGKILGERWKALSDKQRAPYDA 75
Query: 63 MADKDKKRYDTEMQSY 78
A DKKRY+ E +Y
Sbjct: 76 KAAADKKRYEDEKAAY 91
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 50 KTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKW 109
K ++K K A KD + +Y A E+R ++++NP G + K LG++W
Sbjct: 3 KAATKKSAKPEKRRAKKDPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERW 62
Query: 110 ADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ + Y+ A DK RYE E AY+
Sbjct: 63 KALSDKQRAPYDAKAAADKKRYEDEKAAYQ 92
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 138 (53.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 40/158 (25%), Positives = 72/158 (45%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 539 KGKDPNAPKRPMSAYMLWLNASREKIKADHP--GISITDLSKKAGEIWKGMSKEKKEEWD 596
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
A+ ++ Y+ M+ Y GE + + + + E K S K+
Sbjct: 597 RKAEDARREYEKAMKEYEGGRGESSKSYRDKSKKKKKVKVKMEK-KSTPSRGSSSKSSSR 655
Query: 122 QMAEKDKARY---EKEMTAYKNRSVAPVNEEADEEDDE 156
Q++E K++ E ++ +N+S D E++E
Sbjct: 656 QLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEE 693
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 40 EFSKKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K ++ K +++ KK KD M +Y R KIK D+P
Sbjct: 513 EKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKADHPGIS 572
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 573 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 614
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 127 (49.8 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 41/156 (26%), Positives = 74/156 (47%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEK-------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ + A+++K++Y E+++Y K KIK+++ G+ + G K D
Sbjct: 119 YLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLN-GHKGGDC 177
Query: 113 DP----SVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
D V E+ +++KAR E E+ + +VA
Sbjct: 178 DGFSTFDVPIFTEEFLDQNKAR-EAELRRLRKMNVA 212
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+I K LG +W+ + P+ K +Y AE++K +Y KE+ AY+ + E +E
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE 152
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 47/162 (29%), Positives = 73/162 (45%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 538 KGKDPNAPKRPMSAYMLWLNANREKIKSDHP--GISITDLSKKAGELWKAMSKEKKEEWD 595
Query: 62 EMADKDKKRYDTEMQSYT--------PPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVD 113
A+ K+ Y+ M+ Y+ K+ K KQ+ G G+ K +
Sbjct: 596 RKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKKQEKQMKGKGEKKGAASKSSSSTK 655
Query: 114 PSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
S KT M+E K+ KE + S A +E D ED+
Sbjct: 656 SSAKT----MSESFKS---KEFVSSDESSSAESKKE-DSEDE 689
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 43 KKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGD 100
KK A++ K + +++ KK+ KD M +Y R KIK D+P + D
Sbjct: 515 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITD 574
Query: 101 IAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK--NRSVAPVNEEADEE 153
++K+ G+ W + K ++++ AE K YEK M Y N+S + E + ++
Sbjct: 575 LSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKK 629
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 47/162 (29%), Positives = 73/162 (45%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 538 KGKDPNAPKRPMSAYMLWLNANREKIKSDHP--GISITDLSKKAGELWKAMSKEKKEEWD 595
Query: 62 EMADKDKKRYDTEMQSYT--------PPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVD 113
A+ K+ Y+ M+ Y+ K+ K KQ+ G G+ K +
Sbjct: 596 RKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKKQEKQMKGKGEKKGAASKSSSSTK 655
Query: 114 PSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDD 155
S KT M+E K+ KE + S A +E D ED+
Sbjct: 656 SSAKT----MSESFKS---KEFVSSDESSSAESKKE-DSEDE 689
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 43 KKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGD 100
KK A++ K + +++ KK+ KD M +Y R KIK D+P + D
Sbjct: 515 KKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITD 574
Query: 101 IAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK--NRSVAPVNEEADEE 153
++K+ G+ W + K ++++ AE K YEK M Y N+S + E + ++
Sbjct: 575 LSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKK 629
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHP--GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y GE KR K K+ + ++ KK S K+
Sbjct: 598 RKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKK------VKVKMEKKSTPSRGSSSKS 651
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPVNEEADEEDDE 156
Q++E K++ E ++ +N+S D E++E
Sbjct: 652 SSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEE 692
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 43/139 (30%), Positives = 64/139 (46%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 104 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKRRYLDEADRDK 161
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD V D KE K V D +
Sbjct: 162 ERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQPVHDHEKEADTKERSVFDIPI 221
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 222 FT--EEFLNHSKAR-EAEL 237
Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 90 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 147
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY +E+ Y+
Sbjct: 148 EEKRRYLDEADRDKERYMRELEQYQ 172
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
++KD P+ ++AY FF R+ + ++P+ V F + + ERWK ++ +EK+ +
Sbjct: 20 RKKDPNAPKRGLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYE 77
Query: 62 EMADKDKKRYDTEMQSY 78
A DKKRY++E + Y
Sbjct: 78 SKAQADKKRYESEKELY 94
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
KE K+ KD + +Y A E R ++ +NP+ G + + LG++W +
Sbjct: 11 KEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTA 70
Query: 115 SVKTKYEQMAEKDKARYEKEMTAY 138
K YE A+ DK RYE E Y
Sbjct: 71 EEKQPYESKAQADKKRYESEKELY 94
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 118 (46.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 66 KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAE 125
KD + + +Y A E+R +K +N V ++AK G++W ++ K Y+QMA+
Sbjct: 241 KDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQMAK 298
Query: 126 KDKARYEKEMTAYKN-RSVAPVNEEADEED 154
K+K Y +EM YK + ++++ +EE+
Sbjct: 299 KNKEIYLQEMEGYKRTKEEEAMSQKKEEEE 328
Score = 118 (46.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 38/129 (29%), Positives = 59/129 (45%)
Query: 3 KEKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD +KP+ ++AY + E + EN E +K E WK +SE++K +
Sbjct: 239 KIKDPLKPKQPISAYLIYAN----ERRAALKGENKSVIEVAKMAGEEWKNLSEEKKAPYD 294
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGV--GDIAKELGKKWADVDPSVKTK 119
+MA K+K+ Y EM+ Y E+ K++ E+ A +L KK D +K
Sbjct: 295 QMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKKT 354
Query: 120 YEQMAEKDK 128
E K K
Sbjct: 355 KETAKNKKK 363
Score = 36 (17.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 16 YAFFVQVCREEHKKK 30
Y FVQ ++KKK
Sbjct: 222 YLHFVQEAEHDNKKK 236
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 136 (52.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 45/156 (28%), Positives = 67/156 (42%)
Query: 3 KEKDVK----PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKK 58
KEK VK P+ M+AY ++ R+ K ++P + E SKK E WK + + +K+
Sbjct: 533 KEKKVKDSGAPKRPMSAYMLWLNSSRDRIKSENP--GISITEISKKAGEMWKQLGKDKKE 590
Query: 59 RFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKT 118
+ A++ KK YD M+ Y G G K KE KK + K
Sbjct: 591 EWDGKAEEAKKEYDRAMREYRESGGGSSGSSK------------KERKKKRGRNEEKRKR 638
Query: 119 KYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
K EK+K R ++K+R E + E D
Sbjct: 639 KSGAGREKEKERSTGN-DSFKSREFISSEESSSESD 673
Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 43 KKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIA 102
KK A++ K + E+ K R E KD M +Y R +IK +NP + +I+
Sbjct: 516 KKSAKKVKFVKER-KPRKKEKKVKDSGAPKRPMSAYMLWLNSSRDRIKSENPGISITEIS 574
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
K+ G+ W + K +++ AE+ K Y++ M Y+
Sbjct: 575 KKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRAMREYR 611
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 136 (52.9 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 45/161 (27%), Positives = 79/161 (49%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHP--GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y GE KR K K+ + ++ KK S K+
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGESSKRDKSKKKKK------VKVKMEKKSTPSRGSSSKS 651
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPV--NEEADEED 154
Q++E K++ E ++ +N+S +E+++EED
Sbjct: 652 SSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEED 692
Score = 107 (42.7 bits), Expect = 0.00057, P = 0.00057
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 40 EFSKKCAERWKTMSE-KEKKRFHEMAD-KDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K ++ K + K +K+ E+ KD M +Y R KIK D+P
Sbjct: 514 EKKRKQLKKAKMAKDRKSRKKPTEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS 573
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 574 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 40/158 (25%), Positives = 74/158 (46%)
Query: 3 KEKDVK----PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKK 58
KEK VK P+ M+AY ++ RE K ++P + E SKK E WK + + +K+
Sbjct: 536 KEKKVKDAAAPKRPMSAYMLWLNGNRERIKSENP--GISITEISKKAGEMWKQLGKDKKE 593
Query: 59 RFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELG----KKWADVDP 114
+ + A++ K++Y+ M+ Y G K+ + G + K+ G KK +
Sbjct: 594 EWDKKAEEAKRQYEKAMKEYKESGGGAAAATKEKKKKGGKVEAKKKSGGEKEKKKEGGND 653
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADE 152
S K+K + +++ E + R + ++E +E
Sbjct: 654 SFKSK--EFISSEESSSESDHDRGSKRKASDDDDEEEE 689
Score = 124 (48.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 33/103 (32%), Positives = 51/103 (49%)
Query: 40 EFSKKCAERW--KTMSEK-EKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEY 96
E KK E+ K + EK E+K E KD M +Y R +IK +NP
Sbjct: 512 EGKKKKVEKKPKKVVKEKKERKPRKEKKVKDAAAPKRPMSAYMLWLNGNRERIKSENPGI 571
Query: 97 GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ +I+K+ G+ W + K ++++ AE+ K +YEK M YK
Sbjct: 572 SITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKAMKEYK 614
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 134 (52.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP +V + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISVT--DLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y GE KR K K+ + ++ KK S K+
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGESSKRDKSKKKKK------VKVKMEKKSTPSRGSSSKS 651
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPVNEEADEEDDE 156
Q++E K++ E ++ +N+ D E++E
Sbjct: 652 SSRQLSESFKSKEFVSSDESSSGENKGKKKRRRSEDSEEEE 692
Score = 109 (43.4 bits), Expect = 0.00028, P = 0.00028
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 40 EFSKKCAERWKTMSEKE--KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K ++ K +++ KK KD M +Y R KIK D+P
Sbjct: 514 EKKRKQLKKAKMAKDRKSRKKPLEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS 573
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
V D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 574 VTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 128 (50.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEK-------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ + A+++K++Y E+++Y K KIK+++ G+ + G K D
Sbjct: 119 YLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSGSGLMNTLLN-GHKGGDC 177
Query: 113 DP----SVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
D V E+ +++KAR E EM + +VA
Sbjct: 178 DGFSTFDVPIFTEEFLDQNKAR-EAEMRRLRKMNVA 212
Score = 114 (45.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+I K LG +W+ + P+ K +Y AE++K +Y KE+ AY+ + E +E
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE 152
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 128 (50.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 42/156 (26%), Positives = 73/156 (46%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEK-------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ + A+K+K++Y E+ +Y K KIK+++ G+ + G K D
Sbjct: 119 YLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLN-GHKGVDC 177
Query: 113 DP----SVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
D V E+ +++KAR E E+ + +VA
Sbjct: 178 DGFSTFDVPIFTEEFLDQNKAR-EAELRRLRKMNVA 212
Score = 119 (46.9 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGPQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
+I K LG +W+ + P+ K +Y AEK+K +Y KE+ AY+ V E +E+
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQEN 153
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 128 (50.1 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 42/156 (26%), Positives = 75/156 (48%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPP-----AGEK--RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ + A+++K++Y E+++Y EK KIK+++ G+ + G K D
Sbjct: 119 YLDEAEREKQQYMKELRAYQQSEAYKMCAEKIQEKKIKKEDSSSGLMNTLLN-GHKGGDC 177
Query: 113 DP----SVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
D V E+ +++KAR E E+ + +VA
Sbjct: 178 DGFSTFDVPIFTEEFLDQNKAR-EAELRRLRKMNVA 212
Score = 114 (45.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+I K LG +W+ + P+ K +Y AE++K +Y KE+ AY+ + E +E
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCAEKIQE 152
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 52 MSEKEKKRFHEMADKDKKRYDTE----MQSYTPPAGEKRGKIKQDNPEYG--VGDIAKEL 105
M+ K +K+ + +K KK+ + +Y +KR +I ++ PE V + K +
Sbjct: 1 MASKSQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLI 60
Query: 106 GKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
G+ W + P+ K YE+ A+ DK RY KE+ Y+ ++
Sbjct: 61 GEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 3 KEKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD + P+ ++AY F+V+ R E K+ PE A+ K E W +S +K +
Sbjct: 17 KKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYE 76
Query: 62 EMADKDKKRYDTEMQSY 78
+ A DK RY E++ Y
Sbjct: 77 KKAQLDKVRYSKEIEEY 93
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 52 MSEKEKKRFHEMADKDKKRYDTE----MQSYTPPAGEKRGKIKQDNPEYG--VGDIAKEL 105
M+ K +K+ + +K KK+ + +Y +KR +I ++ PE V + K +
Sbjct: 1 MASKSQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLI 60
Query: 106 GKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS 142
G+ W + P+ K YE+ A+ DK RY KE+ Y+ ++
Sbjct: 61 GEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKN 97
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 3 KEKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K+KD + P+ ++AY F+V+ R E K+ PE A+ K E W +S +K +
Sbjct: 17 KKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYE 76
Query: 62 EMADKDKKRYDTEMQSY 78
+ A DK RY E++ Y
Sbjct: 77 KKAQLDKVRYSKEIEEY 93
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHP--GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y G+ KR K K+ + +L KK S K+
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKK------VKAKLEKKSTPSRGSSSKS 651
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPV--NEEADEED 154
Q+++ K++ E ++ +N+S +E++DEE+
Sbjct: 652 SSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSDEEE 692
Score = 111 (44.1 bits), Expect = 0.00011, P = 0.00011
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 40 EFSKKCAERWKTMSE-KEKKRFHE-MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K +R K + K +K+ E KD M +Y R KIK D+P
Sbjct: 514 EKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS 573
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 574 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHP--GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGE--KRGKIKQDNPEYGVGDIAKELGKKWADV-DPSVKT 118
A+ ++ Y+ M+ Y G+ KR K K+ + +L KK S K+
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKK------VKAKLEKKSTPSRGSSSKS 651
Query: 119 KYEQMAEKDKARY---EKEMTAYKNRSVAPV--NEEADEED 154
Q+++ K++ E ++ +N+S +E++DEE+
Sbjct: 652 SSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSDEEE 692
Score = 111 (44.1 bits), Expect = 0.00011, P = 0.00011
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 40 EFSKKCAERWKTMSE-KEKKRFHE-MADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E +K +R K + K +K+ E KD M +Y R KIK D+P
Sbjct: 514 EKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS 573
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 574 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>WB|WBGene00022182 [details] [associations]
symbol:swsn-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG291422 HOGENOM:HOG000230965 KO:K11651
GeneTree:ENSGT00390000003628 EMBL:FO081822 RefSeq:NP_497613.2
ProteinModelPortal:Q9BL39 SMR:Q9BL39 STRING:Q9BL39 PaxDb:Q9BL39
EnsemblMetazoa:Y71H2AM.17 GeneID:175393 KEGG:cel:CELE_Y71H2AM.17
UCSC:Y71H2AM.17 CTD:175393 WormBase:Y71H2AM.17 InParanoid:Q9BL39
OMA:IQPVDED NextBio:887970 Uniprot:Q9BL39
Length = 338
Score = 128 (50.1 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 58 KRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVK 117
+ F +M+ + K + +Q Y + + K++ +NPE + DI K +GK W D+ K
Sbjct: 13 RNFQDMSSRGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEK 72
Query: 118 TKYEQMAEKDKARYEKEMTAYKNRSVA 144
+ Y+ E +KA YEK+M ++ ++
Sbjct: 73 SHYQHEYELEKADYEKQMKHFQGNGIS 99
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 41/156 (26%), Positives = 74/156 (47%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEK-------RGKIKQDNPEYGVGDIAKELGKKWADV 112
+ + A+++K++Y E+++Y K KIK+++ G+ + G K D
Sbjct: 119 YLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLN-GHKGGDC 177
Query: 113 DP----SVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
D V E+ +++KAR E E+ + +VA
Sbjct: 178 DGFSTFDVPIFTEEFLDQNKAR-EAELRRLRKMNVA 212
Score = 114 (45.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+I K LG +W+ + P+ K +Y AE++K +Y KE+ AY+ + E +E
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE 152
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ ++AY ++ RE K+++P + E +K+ E W+ M K+K + A K
Sbjct: 4 KPKRPLSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWEAKAAKA 59
Query: 68 KKRYDTEMQSYTPPAGEKR----GKIKQDNPEYGVGDIAKELGKKWADVD 113
K YD ++ + G G K+ P +AK+ K+ +D D
Sbjct: 60 KDDYDRAVKEFEANGGSSAANGGGAKKRAKP---AKKVAKKSKKEESDED 106
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 148 EEADEEDDE 156
EE+DE+DD+
Sbjct: 101 EESDEDDDD 109
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF + R E K PE + A K E W + EKEK F + A +DK
Sbjct: 21 PKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDK 80
Query: 69 KRYDTEMQSY 78
RY+ E Y
Sbjct: 81 LRYEKEKAEY 90
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 51 TMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKK 108
T E K+R ++ KD + +Y A EKR +I PE V + K +G+
Sbjct: 4 TGKEVRKRRKNK---KDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEA 60
Query: 109 WADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140
W + K +E+ A++DK RYEKE Y N
Sbjct: 61 WNKLGEKEKAPFEKKAQEDKLRYEKEKAEYAN 92
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF + R E K PE + A K E W + EKEK F + A +DK
Sbjct: 21 PKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQEDK 80
Query: 69 KRYDTEMQSY 78
RY+ E Y
Sbjct: 81 LRYEKEKAEY 90
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 51 TMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKK 108
T E K+R ++ KD + +Y A EKR +I PE V + K +G+
Sbjct: 4 TGKEVRKRRKNK---KDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEA 60
Query: 109 WADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140
W + K +E+ A++DK RYEKE Y N
Sbjct: 61 WNKLGEKEKAPFEKKAQEDKLRYEKEKAEYAN 92
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSYTPPAGEK-------RGKIKQDNPEYGV------GDIAKELG 106
+ + A+K+K++Y E+ +Y K KIK+++ G+ G + G
Sbjct: 119 YLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCG 178
Query: 107 KKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
++ D + T E+ +++KAR E E+ + +VA
Sbjct: 179 DGFSTFDVPIFT--EEFLDQNKAR-EAELRRLRKMNVA 213
Score = 119 (46.9 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGPQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
+I K LG +W+ + P+ K +Y AEK+K +Y KE+ AY+ V E +E+
Sbjct: 99 EITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQEN 153
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 44/154 (28%), Positives = 71/154 (46%)
Query: 3 KEKDV-KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD +P+ TAY + R K E+ + +KK +WK+MS +KK ++
Sbjct: 554 KTKDPNEPKRATTAYIIWFNANRNSMK----EDGDTLGDVAKKAGAKWKSMSADDKKEWN 609
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKY- 120
+ A +DK RY+ EM+ Y G G K P KK +D P + K
Sbjct: 610 DKAAQDKARYEAEMKEYKKNGG---GVEKASGPST----------KKSSDQSPGKQFKSK 656
Query: 121 EQMAEKDKARYEKEMTAYKNRSVAPVNEEADEED 154
E +++ D + ++ + A K+ S A +E + E D
Sbjct: 657 EHISDTDDSDDDEPLKAKKDESDA-ASESSGESD 689
Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/113 (34%), Positives = 53/113 (46%)
Query: 33 EENVVFAEFSKKCAERWKTMSEKEKKRFHEMA-DKDKKRYDTEMQSYTPPA-----GEKR 86
EEN+ E KK ++ K EK++K E A K KK D A R
Sbjct: 520 EENI---EPKKKESKEKKNKREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANR 576
Query: 87 GKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+K+D +GD+AK+ G KW + K ++ A +DKARYE EM YK
Sbjct: 577 NSMKEDGDT--LGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYK 627
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 40/157 (25%), Positives = 72/157 (45%)
Query: 3 KEKDVK-PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K HP + + SKK E WK MS+++K+ +
Sbjct: 540 KGKDPNAPKRPMSAYMLWLNASREKIKSDHP--GISITDLSKKAGEIWKGMSKEKKEEWD 597
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
A+ ++ Y+ M+ Y G+ K+D + AK K S K+
Sbjct: 598 RKAEDARREYEKAMKEYEGGRGDSS---KRDKSKKKKKVKAKMEKKSTPSRGSSSKSSSR 654
Query: 122 QMAEKDKARY---EKEMTAYKNRSVAPVNEEADEEDD 155
Q+++ K++ E ++ +N+S D E++
Sbjct: 655 QLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSEEE 691
Score = 108 (43.1 bits), Expect = 0.00040, P = 0.00040
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 40 EFSKKCAERWKTMSEKEKKRFHEMADK--DKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E ++ +R K +++ +R A K D M +Y R KIK D+P
Sbjct: 514 EKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS 573
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+ D++K+ G+ W + K ++++ AE + YEK M Y+
Sbjct: 574 ITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYE 615
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 102 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 159
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD D KE K V D +
Sbjct: 160 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 219
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 220 FT--EEFLNHSKAR-EAEL 235
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 88 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 145
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY KE+ Y+
Sbjct: 146 EEKQRYLDEADRDKERYMKELEQYQ 170
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 103 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD D KE K V D +
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPI 220
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 221 FT--EEFLNHSKAR-EAEL 236
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 89 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 146
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY KE+ Y+
Sbjct: 147 EEKQRYLDEADRDKERYMKELEQYQ 171
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 103 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD D KE K V D +
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 221 FT--EEFLNHSKAR-EAEL 236
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 89 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 146
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY KE+ Y+
Sbjct: 147 EEKQRYLDEADRDKERYMKELEQYQ 171
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 103 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD D KE K V D +
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 221 FT--EEFLNHSKAR-EAEL 236
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 89 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 146
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY KE+ Y+
Sbjct: 147 EEKQRYLDEADRDKERYMKELEQYQ 171
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 43 KKCAERWKTMSEKE-KKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDI 101
KK A+R K + +K+ +K+ KD M +Y R KIK +NP + D+
Sbjct: 512 KKDAKRAKIVKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDL 571
Query: 102 AKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEE 153
+K+ G+ W ++ K ++++ AE+ K YEK M Y N S AP E+
Sbjct: 572 SKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEY-NTS-APTEASKKEK 621
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 3 KEKDV-KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K KD P+ M+AY ++ RE+ K ++P + + SKK E WK MS +K+ +
Sbjct: 534 KTKDPGAPKRPMSAYMLWLNASREKIKSENP--GISITDLSKKAGEIWKNMSRDKKEEWD 591
Query: 62 EMADKDKKRYDTEMQSY--TPP--AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVK 117
A++ K+ Y+ M+ Y + P A +K K K + + + K+ A P +
Sbjct: 592 RRAEEAKRDYEKAMKEYNTSAPTEASKKEKKTKGEKKKAETSEKKKQKPSSPARAAPKLN 651
Query: 118 TK 119
++
Sbjct: 652 SE 653
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/139 (30%), Positives = 63/139 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 103 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 69 KRYDTEMQSYTPPAGEK----------RGKI-KQDNPEYGVGDIAKELGKKWADV-DPSV 116
+RY E++ Y K +GK +QD D KE K V D +
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 117 KTKYEQMAEKDKARYEKEM 135
T E+ KAR E E+
Sbjct: 221 FT--EEFLNHSKAR-EAEL 236
Score = 114 (45.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K +KR + D + + + + Y E+R +++ PE +I + LG +W+ + P
Sbjct: 89 KGRKRKKPLRDSNAPK--SPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPP 146
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYK 139
K +Y A++DK RY KE+ Y+
Sbjct: 147 EEKQRYLDEADRDKERYMKELEQYQ 171
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 42/144 (29%), Positives = 70/144 (48%)
Query: 3 KEKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
KEKD +KP+ ++A+ + E + EEN E +K E WK +S+K+K +
Sbjct: 248 KEKDPLKPKHPVSAFLVYAN----ERRAALREENKSVVEVAKITGEEWKNLSDKKKAPYE 303
Query: 62 EMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYE 121
++A K+K+ Y M+ Y E+ K++ E + K L K+ A K K +
Sbjct: 304 KVAKKNKETYLQAMEEYKRTKEEEALSQKKEEEE-----LLK-LHKQEALQMLKKKEKTD 357
Query: 122 QMAEKDKARYEKEMTAYKNRSVAP 145
+ +K+KA +K KN +V P
Sbjct: 358 NLIKKEKATKKK-----KNENVDP 376
Score = 112 (44.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 25/103 (24%), Positives = 59/103 (57%)
Query: 53 SEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADV 112
+E++ K+ ++ +KD + + ++ A E+R ++++N V ++AK G++W ++
Sbjct: 238 AEQDNKKKNKK-EKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNL 294
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYKN-RSVAPVNEEADEED 154
K YE++A+K+K Y + M YK + ++++ +EE+
Sbjct: 295 SDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEEALSQKKEEEE 337
Score = 97 (39.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 33/123 (26%), Positives = 56/123 (45%)
Query: 25 EEHKKKHPEENVVFAEFSKKCAERWKTMSEKEK---KRFHEMADKDKKRYDTEMQSYTPP 81
EE K H +E + + KK E+ + +KEK K+ +E D +K + SY
Sbjct: 336 EELLKLHKQEAL---QMLKK-KEKTDNLIKKEKATKKKKNENVDPNKPKKPAS--SYFLF 389
Query: 82 AGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+ ++R K+ ++ P + + KW ++ K Y A K Y+KE+ AY +
Sbjct: 390 SKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEAYNKK 449
Query: 142 SVA 144
S A
Sbjct: 450 SAA 452
Score = 46 (21.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 4 EKDVKPRGRMTA---YAFFVQVCREEHKKKHPEE 34
E D K R M Y FVQ +++KKK+ +E
Sbjct: 216 EDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKE 249
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/100 (29%), Positives = 48/100 (48%)
Query: 44 KCAERWKTMSEKEKKRFHEMADKDKKRYDT----EMQSYTPPAGEKRGKIKQDNPEYGVG 99
+ E+ E KKR K KK + Y E+R +I+ +P+
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 100 DIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+I K LG +W+ + P+ K +Y AE++K +Y KE+ AY+
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ 138
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 3 KEKDVKPRGR---MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKR 59
K K + P G +T Y F+ RE+ + +HP+ + F E +K W + EK+R
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQR 118
Query: 60 FHEMADKDKKRYDTEMQSY 78
+ + A+++K++Y E+++Y
Sbjct: 119 YLDEAEREKQQYMKELRAY 137
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ +A+ F++ RE KK++P+ V A K ++WK++S+ EK + A+K
Sbjct: 37 KPKRPASAFFVFMEDFRETFKKENPKNKSV-ATVGKAAGDKWKSLSDSEKAPYVAKAEKR 95
Query: 68 KKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKE 104
K Y+ +++Y E G + + + V ++ E
Sbjct: 96 KVEYEKNIKAYNKKLEE--GPKEDEESDKSVSEVNDE 130
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 86 RGKIKQDNPEY-GVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVA 144
R K++NP+ V + K G KW + S K Y AEK K YEK + AY N+ +
Sbjct: 53 RETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY-NKKL- 110
Query: 145 PVNEEADEEDDE 156
EE +ED+E
Sbjct: 111 ---EEGPKEDEE 119
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 82 (33.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 17/71 (23%), Positives = 40/71 (56%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
+P+ ++AY F++ + ++++PE N + E KK A W+ + +K+ + E D
Sbjct: 46 RPKRPLSAYFRFLRDNQPAFRQQNPELNSL--ELVKKLAGVWRELPASQKQVYEEARKTD 103
Query: 68 KKRYDTEMQSY 78
++Y+ ++ +Y
Sbjct: 104 WRKYEEQLAAY 114
Score = 81 (33.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143
K+L + W ++ S K Y Q+A+ DK RY+ EM +++ + V
Sbjct: 180 KQLFETWQNLSSSQKQPYLQLAQDDKVRYQNEMKSWEAKMV 220
>RGD|1565549 [details] [associations]
symbol:Pbrm1 "polybromo 1" species:10116 "Rattus norvegicus"
[GO:0000776 "kinetochore" evidence=IEA;ISO] [GO:0001890 "placenta
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0007507 "heart development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA;ISO] InterPro:IPR009071 InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
Pfam:PF00505 RGD:1565549 GO:GO:0008285 GO:GO:0007507 GO:GO:0000776
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001890 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
OrthoDB:EOG41NTK5 GeneTree:ENSGT00390000003017 IPI:IPI00766567
Ensembl:ENSRNOT00000016581 UCSC:RGD:1565549 NextBio:655693
ArrayExpress:D3ZT52 Uniprot:D3ZT52
Length = 1704
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQM 123
A K+ + M Y + E R IK +P+Y G++++ +G +W +++ + K +YE+
Sbjct: 1387 AKKESSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEER 1446
Query: 124 AEKDKARYEKEMTAYKNR-SVAP 145
A K + E+E A + + S +P
Sbjct: 1447 AAKAAEQQERERAAQQQQPSASP 1469
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 75 MQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKE 134
+ +Y E R +IK+DNP V DIAK G+ W + KT++EQ A K K Y K
Sbjct: 10 LSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKA 67
Query: 135 MTAYK 139
+ Y+
Sbjct: 68 VKEYE 72
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
+P+ ++AY ++ RE+ KK +P V + +K+ E W+ + K+K + + A K
Sbjct: 5 RPKRPLSAYMLWLNETREQIKKDNPGSKVT--DIAKRGGELWRGL--KDKTEWEQKAIKM 60
Query: 68 KKRYDTEMQSYTPPAGEKRGKIKQ 91
K+ Y+ ++ Y G G K+
Sbjct: 61 KEEYNKAVKEYEANGGTDSGAPKK 84
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 105 (42.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ +T Y F+ RE+ + K PE V F E ++ W + +EK+R+ + AD+DK
Sbjct: 103 PKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 69 KR 70
+R
Sbjct: 161 ER 162
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 79 (32.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSV 143
K + + W ++ S K Y Q+AE DK RY EM +++ + V
Sbjct: 183 KTINENWKNLSSSQKQVYIQLAEDDKVRYYNEMKSWEEQMV 223
Score = 71 (30.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ MT+Y F + K ++P+ +E KK AE W+ + + EKK + + D
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKN--SELIKKIAELWRELPDSEKKIYEDAYRADW 107
Query: 69 KRYDTEM 75
+ Y E+
Sbjct: 108 QVYKEEV 114
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 75 (31.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ M++Y F + K KHP+ + +E +K A W+ + E EKK + +
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFKAEW 106
Query: 69 KRYDTEMQSY 78
K Y + Y
Sbjct: 107 KAYKEAVSKY 116
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
K + + W ++ P K Y Q+A+ D+ RY+ EM +++ +
Sbjct: 182 KLVNEAWKNLSPEEKQAYIQLAKDDRIRYDNEMKSWEEQ 220
>SGD|S000002160 [details] [associations]
symbol:NHP10 "Protein related to mammalian high mobility
group proteins" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0042766 "nucleosome mobilization"
evidence=IDA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045027 "DNA end binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 SGD:S000002160 Pfam:PF00505
GO:GO:0006355 EMBL:BK006938 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0031011 GO:GO:0006302 GO:GO:0042766 EMBL:Z48008 GO:GO:0000404
GO:GO:0045027 PIR:S50980 RefSeq:NP_010282.3 RefSeq:NP_010286.3
ProteinModelPortal:Q03435 SMR:Q03435 DIP:DIP-1387N IntAct:Q03435
MINT:MINT-388714 STRING:Q03435 PaxDb:Q03435 PeptideAtlas:Q03435
EnsemblFungi:YDL002C GeneID:851562 GeneID:851566 KEGG:sce:YDL002C
KEGG:sce:YDR003W CYGD:YDL002c HOGENOM:HOG000001026 KO:K11680
OMA:AYLLFCE OrthoDB:EOG4RV61X NextBio:968998 Genevestigator:Q03435
GermOnline:YDL002C Uniprot:Q03435
Length = 203
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 22/102 (21%), Positives = 54/102 (52%)
Query: 55 KEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDP 114
K K + H++ ++D +Y + +I+Q+ G D+ ++L + W +++
Sbjct: 78 KSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIRQN----GSLDVTRDLAEGWKNLNE 133
Query: 115 SVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE 156
+ Y ++ +D+ RY+ EM Y N+ ++ ++ + D+E++E
Sbjct: 134 QDRKPYYKLYSEDRERYQMEMEIY-NKKISNIDADDDKEENE 174
>UNIPROTKB|E1BNH8 [details] [associations]
symbol:E1BNH8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0008285 GO:GO:0007507
GO:GO:0000776 GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001890
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 OMA:WLKVGDC GeneTree:ENSGT00390000003017
EMBL:DAAA02054367 IPI:IPI00699896 Ensembl:ENSBTAT00000019672
Uniprot:E1BNH8
Length = 1664
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQM 123
A K+ + M Y + E R IK +P+Y G++++ +G +W +++ + K +YE+
Sbjct: 1347 AKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEER 1406
Query: 124 AEKDKARYEKEMTAYKNR-SVAP 145
A K + E+E A + + S +P
Sbjct: 1407 AAKVAEQQERERAAQQQQPSASP 1429
>UNIPROTKB|E2RRL7 [details] [associations]
symbol:PBRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 OMA:WLKVGDC GeneTree:ENSGT00390000003017
EMBL:AAEX03012193 EMBL:AAEX03012194 EMBL:AAEX03012195
Ensembl:ENSCAFT00000014524 Uniprot:E2RRL7
Length = 1689
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQM 123
A K+ + M Y + E R IK +P+Y G++++ +G +W +++ + K +YE+
Sbjct: 1372 AKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEER 1431
Query: 124 AEKDKARYEKEMTAYKNR-SVAP 145
A K + E+E A + + S +P
Sbjct: 1432 AAKVAEQQERERAAQQQQPSASP 1454
>UNIPROTKB|Q86U86 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=NAS] [GO:0007067 "mitosis"
evidence=TAS] [GO:0000228 "nuclear chromosome" evidence=NAS]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0008285 GO:GO:0007507 GO:GO:0000776 GO:GO:0007067
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001890 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359 GO:GO:0000228
MIM:144700 CTD:55193 HOVERGEN:HBG079860 KO:K11757 EMBL:AF197569
EMBL:AF225870 EMBL:AF225871 EMBL:AF225872 EMBL:AF177387
EMBL:AY281068 EMBL:BC115009 EMBL:BC115010 EMBL:BC115011
EMBL:BC129934 EMBL:BC129935 EMBL:AK056541 IPI:IPI00023097
IPI:IPI00301041 IPI:IPI00334894 IPI:IPI00384176 IPI:IPI00398781
IPI:IPI00640304 IPI:IPI00873041 IPI:IPI00909142 IPI:IPI00910435
RefSeq:NP_060783.3 UniGene:Hs.189920 UniGene:Hs.476320 PDB:2KTB
PDB:3G0J PDB:3HMF PDB:3IU5 PDB:3IU6 PDB:3K2J PDB:3LJW PDB:3MB4
PDB:3TLP PDBsum:2KTB PDBsum:3G0J PDBsum:3HMF PDBsum:3IU5
PDBsum:3IU6 PDBsum:3K2J PDBsum:3LJW PDBsum:3MB4 PDBsum:3TLP
ProteinModelPortal:Q86U86 SMR:Q86U86 DIP:DIP-33045N IntAct:Q86U86
MINT:MINT-1195749 STRING:Q86U86 PhosphoSite:Q86U86 DMDM:73921624
PaxDb:Q86U86 PRIDE:Q86U86 Ensembl:ENST00000296302
Ensembl:ENST00000337303 Ensembl:ENST00000356770
Ensembl:ENST00000394830 Ensembl:ENST00000409057
Ensembl:ENST00000409114 Ensembl:ENST00000409767
Ensembl:ENST00000410007 Ensembl:ENST00000412587 GeneID:55193
KEGG:hsa:55193 UCSC:uc003deq.2 UCSC:uc003der.2 UCSC:uc003des.2
UCSC:uc003det.2 UCSC:uc003deu.2 UCSC:uc003dew.2 UCSC:uc003dey.2
UCSC:uc010hmk.1 GeneCards:GC03M052579 H-InvDB:HIX0003364
HGNC:HGNC:30064 HPA:HPA015629 MIM:606083 neXtProt:NX_Q86U86
PharmGKB:PA162398846 InParanoid:Q86U86 OMA:WLKVGDC PhylomeDB:Q86U86
ChEMBL:CHEMBL1795184 ChiTaRS:PBRM1 EvolutionaryTrace:Q86U86
GenomeRNAi:55193 NextBio:59051 ArrayExpress:Q86U86 Bgee:Q86U86
Genevestigator:Q86U86 GermOnline:ENSG00000163939 Uniprot:Q86U86
Length = 1689
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 64 ADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQM 123
A K+ + M Y + E R IK +P+Y G++++ +G +W +++ + K +YE+
Sbjct: 1372 AKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEER 1431
Query: 124 AEKDKARYEKEMTAYKNR-SVAP 145
A K + E+E A + + S +P
Sbjct: 1432 AAKVAEQQERERAAQQQQPSASP 1454
>ZFIN|ZDB-GENE-980526-466 [details] [associations]
symbol:sox11b "SRY-box containing gene 11b"
species:7955 "Danio rerio" [GO:0009611 "response to wounding"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 ZFIN:ZDB-GENE-980526-466
GO:GO:0009611 GO:GO:0030182 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG005040
InterPro:IPR017386 PIRSF:PIRSF038098 HSSP:P48432 EMBL:U85091
IPI:IPI00486894 UniGene:Dr.77148 ProteinModelPortal:Q9YH22
SMR:Q9YH22 Uniprot:Q9YH22
Length = 368
Score = 107 (42.7 bits), Expect = 0.00023, P = 0.00023
Identities = 38/150 (25%), Positives = 66/150 (44%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRY- 71
M A+ + ++ R + ++ P+ + AE SK+ +RWK + + EK F A++ + ++
Sbjct: 50 MNAFMVWSKIERRKIMEQSPDMHN--AEISKRLGKRWKMLKDSEKIPFIREAERLRLQHM 107
Query: 72 -DTEMQSYTP---PAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKD 127
D Y P P + K +PE + GKK A + PS + A
Sbjct: 108 ADYPDYKYRPKKKPKLDSSSKPAVQSPEKISKSVKAAAGKKSAKLKPSKPGNFPARASTQ 167
Query: 128 KARYEKEMTAYK-NRSVAPVNEEADEEDDE 156
R+ T K +S+ E D+EDD+
Sbjct: 168 DCRFNYVFTNLKVTKSIK--RELTDDEDDD 195
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 89 (36.4 bits), Expect = 0.00029, P = 0.00029
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 88 KIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRS--VAP 145
++K NP+ + +I K +G W D+ K +Y E +K Y + M AY N +A
Sbjct: 13 QVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAY 72
Query: 146 VNEEADEE 153
+N ++ E
Sbjct: 73 INAKSRAE 80
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 104 (41.7 bits), Expect = 0.00032, P = 0.00032
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCA-ERWKTMSEKEKKRFHEMADK 66
KP+ +TA+ F+ R+ K +H N A+ + K E+WK+++E+EKK + + A +
Sbjct: 114 KPKRPLTAFFIFMSDFRKTFKSEH---NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAE 170
Query: 67 DKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEK 126
K Y+ ++S E+ + + D+ V D A+E K D D V+ K + +
Sbjct: 171 LKAEYNKSLESNDADEEEEDEEKQSDD----VDD-AEE---KQVDDDDEVEEKEVENTDD 222
Query: 127 DKARYE-KE 134
DK E KE
Sbjct: 223 DKKEAEGKE 231
>UNIPROTKB|Q4H0T5 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:122765 "Trachypithecus cristatus" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 HOVERGEN:HBG106674 GO:GO:0070363
EMBL:AJ830015 ProteinModelPortal:Q4H0T5 PRIDE:Q4H0T5 Uniprot:Q4H0T5
Length = 246
Score = 104 (41.7 bits), Expect = 0.00033, P = 0.00033
Identities = 35/107 (32%), Positives = 53/107 (49%)
Query: 1 MPKEKDV----KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKE 56
M K K++ KP+ +AY +V +E K P+E + K E WK +S+ E
Sbjct: 143 MTKRKELTQLGKPKRPRSAYNVYVAEKFQEAKGDSPQEKL------KTVKENWKNLSDSE 196
Query: 57 KKRFHEMADKDKKRYDTEMQSYTPP---AGEK---RGKIKQDNPEYG 97
K+ + +A +D+ RY EM+S+ AG K R IKQ +YG
Sbjct: 197 KELYIRLAKEDEIRYHNEMKSWEEQMIEAGRKDLLRRTIKQ-RQKYG 242
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 77 (32.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ M++Y F + K KHP+ V +E +K A W+ + E EKK + +
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKV--SELIRKIAAMWRELPEAEKKVYEADFKAEW 106
Query: 69 KRYDTEMQSY 78
K Y + Y
Sbjct: 107 KVYKEAVSKY 116
Score = 64 (27.6 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 103 KELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
K + + W ++ K Y Q+A+ D+ RY+ EM +++ +
Sbjct: 182 KLVNQAWKNLSHDEKQAYIQLAKDDRIRYDNEMKSWEEQ 220
>UNIPROTKB|Q3BDU3 [details] [associations]
symbol:PMS1 "Rhabdomyosarcoma antigen MU-RMS-40.10E"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR002099
InterPro:IPR003594 InterPro:IPR013507 Pfam:PF01119 SMART:SM00387
Prosite:PS00058 Pfam:PF00505 GO:GO:0005524 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
Gene3D:3.30.565.10 SUPFAM:SSF55874 EMBL:AC013468 GO:GO:0030983
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 InterPro:IPR014762 PANTHER:PTHR10073 EMBL:AC008122
UniGene:Hs.111749 HGNC:HGNC:9121 HOGENOM:HOG000039972
HOVERGEN:HBG031886 ChiTaRS:PMS1 EMBL:AY540751 IPI:IPI00916989
SMR:Q3BDU3 STRING:Q3BDU3 Ensembl:ENST00000450931 Uniprot:Q3BDU3
Length = 659
Score = 106 (42.4 bits), Expect = 0.00080, P = 0.00080
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+A A FVQ R + ++P+ ++ A + E WKT+SE+EK ++ E A KD +RY+
Sbjct: 536 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 593
Query: 73 TEMQ 76
++M+
Sbjct: 594 SQMK 597
>UNIPROTKB|E9PC65 [details] [associations]
symbol:PMS1 "PMS1 protein homolog 1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR002099
InterPro:IPR003594 InterPro:IPR013507 Pfam:PF01119 Pfam:PF00505
GO:GO:0005524 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006298 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AC013468 GO:GO:0030983 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 PANTHER:PTHR10073 EMBL:AC008122
HGNC:HGNC:9121 ChiTaRS:PMS1 IPI:IPI00873522
ProteinModelPortal:E9PC65 SMR:E9PC65 Ensembl:ENST00000424307
UCSC:uc010zgb.1 ArrayExpress:E9PC65 Bgee:E9PC65 Uniprot:E9PC65
Length = 711
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+A A FVQ R + ++P+ ++ A + E WKT+SE+EK ++ E A KD +RY+
Sbjct: 514 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 571
Query: 73 TEMQ 76
++M+
Sbjct: 572 SQMK 575
>UNIPROTKB|B7ZAA0 [details] [associations]
symbol:PMS1 "cDNA, FLJ79114, highly similar to PMS1 protein
homolog 1" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] InterPro:IPR009071
InterPro:IPR002099 InterPro:IPR013507 Pfam:PF01119 Pfam:PF00505
GO:GO:0005524 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006298 EMBL:AC013468 GO:GO:0030983
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 PANTHER:PTHR10073 EMBL:AC008122 UniGene:Hs.111749
HGNC:HGNC:9121 HOVERGEN:HBG031886 ChiTaRS:PMS1 EMBL:AK316215
IPI:IPI00917781 SMR:B7ZAA0 STRING:B7ZAA0 Ensembl:ENST00000418224
Ensembl:ENST00000432292 Uniprot:B7ZAA0
Length = 756
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M+A A FVQ R + ++P+ ++ A + E WKT+SE+EK ++ E A KD +RY+
Sbjct: 399 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 456
Query: 73 TEMQ 76
++M+
Sbjct: 457 SQMK 460
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 102 (41.0 bits), Expect = 0.0010, P = 0.0010
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 3 KEKD-VKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K +D +P+ +AY F + R E K+ E++ E +K E+W ++SE ++K +
Sbjct: 110 KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169
Query: 62 EMADKDKKRYDTEMQSY 78
E A K ++ Y+ EM +Y
Sbjct: 170 EEASKLREAYEEEMAAY 186
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.308 0.126 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 156 156 0.00073 106 3 11 23 0.46 32
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 150
No. of states in DFA: 572 (61 KB)
Total size of DFA: 158 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.39u 0.10s 24.49t Elapsed: 00:00:02
Total cpu time: 24.43u 0.10s 24.53t Elapsed: 00:00:02
Start: Thu Aug 15 17:04:00 2013 End: Thu Aug 15 17:04:02 2013
WARNINGS ISSUED: 1