RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3264
(156 letters)
>gnl|CDD|204115 pfam09011, DUF1898, Domain of unknown function (DUF1898). This
domain is predominantly found in Maelstrom homolog
proteins. It has no known function.
Length = 69
Score = 63.6 bits (155), Expect = 2e-14
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ + AY FFVQ R E K++ P+ AEFSK C+E+WK MSE+EK+++ E A +D
Sbjct: 3 KPKAKRNAYFFFVQTMRPELKREGPQVPG-VAEFSKLCSEKWKAMSEEEKEKYEEKARED 61
Query: 68 KKRYDTEM 75
KKRYD EM
Sbjct: 62 KKRYDREM 69
Score = 31.6 bits (72), Expect = 0.025
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 90 KQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEM 135
++ GV + +K +KW + K KYE+ A +DK RY++EM
Sbjct: 24 REGPQVPGVAEFSKLCSEKWKAMSEEEKEKYEEKAREDKKRYDREM 69
>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III
members of the HMG-box superfamily of DNA-binding
proteins. These proteins bind the minor groove of DNA
in a non-sequence specific fashion and contain two or
more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 61.5 bits (150), Expect = 1e-13
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY F Q R + KK++P+ +V E +K E+WK +SE+EKK++ E A+KDK
Sbjct: 1 PKRPLSAYFLFSQEQRPKLKKENPDASV--TEVTKILGEKWKELSEEEKKKYEEKAEKDK 58
Query: 69 KRYDTEMQ 76
+RY+ EM+
Sbjct: 59 ERYEKEMK 66
Score = 51.1 bits (123), Expect = 1e-09
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEM 135
E+R K+K++NP+ V ++ K LG+KW ++ K KYE+ AEKDK RYEKEM
Sbjct: 14 EQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65
>gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a
variety of eukaryotic chromosomal proteins and
transcription factors. HMGs bind to the minor groove of
DNA and have been classified by DNA binding
preferences. Two phylogenically distinct groups of
Class I proteins bind DNA in a sequence specific
fashion and contain a single HMG box. One group
(SOX-TCF) includes transcription factors, TCF-1, -3,
-4; and also SRY and LEF-1, which bind four-way DNA
junctions and duplex DNA targets. The second group
(MATA) includes fungal mating type gene products MC,
MATA1 and Ste11. Class II and III proteins (HMGB-UBF)
bind DNA in a non-sequence specific fashion and contain
two or more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 58.0 bits (141), Expect = 3e-12
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY F Q R E K ++P + E SK E WK++SE+EKK++ E A+KDK
Sbjct: 1 PKRPLSAYFLFSQEHRAEVKAENPGLS--VGEISKILGEMWKSLSEEEKKKYEEKAEKDK 58
Query: 69 KRYDTEM 75
+RY+ EM
Sbjct: 59 ERYEKEM 65
Score = 52.6 bits (127), Expect = 3e-10
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEM 135
E R ++K +NP VG+I+K LG+ W + K KYE+ AEKDK RYEKEM
Sbjct: 14 EHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 54.2 bits (131), Expect = 1e-10
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ M+A+ F Q R + K ++P ++ AE SKK ERWK +SE+EK + E A KD
Sbjct: 1 KPKRPMSAFMLFSQENRAKIKAENP--DLSNAEISKKLGERWKLLSEEEKAPYEEKAKKD 58
Query: 68 KKRYDTEMQSY 78
K+RY+ EM Y
Sbjct: 59 KERYEEEMPEY 69
Score = 46.2 bits (110), Expect = 1e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
E R KIK +NP+ +I+K+LG++W + K YE+ A+KDK RYE+EM YK
Sbjct: 15 ENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70
>gnl|CDD|189580 pfam00505, HMG_box, HMG (high mobility group) box.
Length = 69
Score = 50.7 bits (122), Expect = 2e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
E+R K+K +NP +I+K LG+KW ++ K YE+ AEK+KARYEK AYK
Sbjct: 14 EQRAKLKAENPGLKNAEISKILGEKWKNLSEEEKKPYEEKAEKEKARYEKAYPAYK 69
Score = 49.9 bits (120), Expect = 4e-09
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
++A+ F Q R + K ++P AE SK E+WK +SE+EKK + E A+K+K RY+
Sbjct: 5 LSAFFLFSQEQRAKLKAENPGLKN--AEISKILGEKWKNLSEEEKKPYEEKAEKEKARYE 62
Query: 73 TEMQSY 78
+Y
Sbjct: 63 KAYPAY 68
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 51.8 bits (124), Expect = 1e-08
Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY + R+E +K++P+ + F E K +E+WK ++++EK+ +++ A+ D+
Sbjct: 71 PKRPLSAYFLYSAENRDEIRKENPK--LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDR 128
Query: 69 KRYDTEMQSYTP--PAGEKRGKIKQDNPE-----------YGVGDIAKELGKKWADVDPS 115
+RY E + Y P G ++ P+ + + K + K W+++D S
Sbjct: 129 ERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDES 188
Query: 116 VKTKYEQMAEKDKARYEKEM 135
K KY +K K Y+
Sbjct: 189 KKKKYIDKYKKLKEEYDSFY 208
Score = 39.5 bits (92), Expect = 2e-04
Identities = 25/102 (24%), Positives = 45/102 (44%)
Query: 38 FAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG 97
E K + +K K + KD + +Y + E R +I+++NP+
Sbjct: 38 LVELEKPLQQLLTKPRKKTKSKRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLT 97
Query: 98 VGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
G++ K L +KW ++ K Y + A D+ RY++E Y
Sbjct: 98 FGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139
>gnl|CDD|238685 cd01389, MATA_HMG-box, MATA_HMG-box, class I member of the HMG-box
superfamily of DNA-binding proteins. These proteins
contain a single HMG box, and bind the minor groove of
DNA in a highly sequence-specific manner. Members
include the fungal mating type gene products MC, MATA1
and Ste11.
Length = 77
Score = 39.2 bits (92), Expect = 5e-05
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+K ++K +NP +I++ +G+ W P VK Y+++AE++K R+ +E YK
Sbjct: 15 DKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYK 70
Score = 30.7 bits (70), Expect = 0.076
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 40 EFSKKCAERWKTMSEKEKKRFHEMADKDKKR 70
E S+ W++ S + K + E+A+++K+R
Sbjct: 31 EISRIIGRMWRSESPEVKAYYKELAEEEKER 61
>gnl|CDD|185511 PTZ00199, PTZ00199, high mobility group protein; Provisional.
Length = 94
Score = 39.1 bits (91), Expect = 1e-04
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 53 SEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYG--VGDIAKELGKKWA 110
K R ++ KD + +Y A EKR +I +NPE V + K +G+ W
Sbjct: 5 QGKVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWN 64
Query: 111 DVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140
+ K YE+ A++DK RYEKE Y
Sbjct: 65 KLSEEEKAPYEKKAQEDKVRYEKEKAEYAK 94
Score = 36.8 bits (85), Expect = 7e-04
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 9 PRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDK 68
P+ ++AY FF + R E ++PE A K E W +SE+EK + + A +DK
Sbjct: 23 PKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDK 82
Query: 69 KRYDTEMQSY 78
RY+ E Y
Sbjct: 83 VRYEKEKAEY 92
>gnl|CDD|238684 cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I member of the
HMG-box superfamily of DNA-binding proteins. These
proteins contain a single HMG box, and bind the minor
groove of DNA in a highly sequence-specific manner.
Members include SRY and its homologs in insects and
vertebrates, and transcription factor-like proteins,
TCF-1, -3, -4, and LEF-1. They appear to bind the minor
groove of the A/T C A A A G/C-motif.
Length = 72
Score = 35.7 bits (83), Expect = 8e-04
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
R K+ Q+ P I+K LG +W + K Y + A+K K + K YK R
Sbjct: 15 RHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72
Score = 34.2 bits (79), Expect = 0.003
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 13 MTAYAFFVQVCREEHKKKHPE-ENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRY 71
M A+ F + R + +++P EN SK +RWK +S +EK+ ++E A K K+ +
Sbjct: 6 MNAFMLFSKRHRRKVLQEYPLKEN---RAISKILGDRWKALSNEEKQPYYEEAKKLKELH 62
>gnl|CDD|205301 pfam13120, DUF3974, Domain of unknown function (DUF3974). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria, and is approximately
130 amino acids in length.
Length = 126
Score = 28.9 bits (64), Expect = 0.60
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 14 TAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEK-KRFHEMADKDKKRYD 72
T + F + R E KK+ N +F ++ E+ +M K+K K+ H MA KK +
Sbjct: 62 TQHPLFYRWIRTEGKKEQKAFNTLFCAAGQRTREQVFSMLPKDKQKKVHSMAKSTKKITN 121
Query: 73 TEM 75
++
Sbjct: 122 EDI 124
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 29.2 bits (67), Expect = 0.97
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 100 DIAKELGKKW----ADVDPSVKTKYEQMAEKD----------KARYEKEMTAYKNRSVAP 145
++A E G KW +VD +K +++AE + R + A K +
Sbjct: 221 ELAAEAGPKWEWQPPEVDEELKAAVKELAEAKLKEAYQITDKQEREAA-LDAIKEEVLEA 279
Query: 146 VNEEADEEDDE 156
+ E +EE+DE
Sbjct: 280 LAAEEEEEEDE 290
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase.
Length = 469
Score = 28.2 bits (63), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 29 KKHPEENVVF-----AEFSKKCAERWKTMSEK 55
HP ENV++ + KC ER +TM EK
Sbjct: 97 NAHPSENVLYIQVGDPKLDHKCWERPETMDEK 128
>gnl|CDD|238930 cd01968, Nitrogenase_NifE_I, Nitrogenase_NifE_I: a subgroup of the
NifE subunit of the NifEN complex: NifE forms an
alpha2beta2 tetramer with NifN. NifE and NifN are
structurally homologous to nitrogenase MoFe protein
alpha and beta subunits respectively. NifEN
participates in the synthesis of the iron-molybdenum
cofactor (FeMoco) of the MoFe protein. NifB-co (an iron
and sulfur containing precursor of the FeMoco) from NifB
is transferred to the NifEN complex where it is further
processed to FeMoco. The NifEN bound precursor of FeMoco
has been identified as a molybdenum-free, iron- and
sulfur- containing analog of FeMoco. It has been
suggested that this NifEN bound precursor also acts as a
cofactor precursor in nitrogenase systems which require
a cofactor other than FeMoco: i.e. iron-vanadium
cofactor (FeVco) or iron only cofactor (FeFeco).
Length = 410
Score = 28.1 bits (63), Expect = 2.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 96 YGVGD-------IAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
YG+ D IA+ LG D + + E++ +++AR E+ Y+ R
Sbjct: 238 YGIRDTSKSLRNIAELLG------DEELIERTEELIAREEARLRPELAPYRAR 284
>gnl|CDD|233390 TIGR01385, TFSII, transcription elongation factor S-II. This model
represents eukaryotic transcription elongation factor
S-II. This protein allows stalled RNA transcription
complexes to perform a cleavage of the nascent RNA and
restart at the newly generated 3-prime end.
Length = 299
Score = 27.5 bits (61), Expect = 2.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 29 KKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGK 88
+KHP E++ ++ +KK + WK + +K K +DK + S A + K
Sbjct: 53 RKHPNEDI--SKLAKKIIKSWKKVVDKNKSDHPGGNPEDKTTVGESVNSVKQEAKSQSDK 110
Query: 89 IKQD 92
I+Q
Sbjct: 111 IEQP 114
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 27.6 bits (61), Expect = 3.5
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 30 KHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKI 89
K EE + A+ K+ + +E+E ++ DK K++++ E+ + E R
Sbjct: 1207 KEAEEALTVAQ--KRAMD-----AEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRLPK 1259
Query: 90 KQDNPEYGVGDIAK-ELGKKWADVDPSVKTKYEQMAEKDKARYEK 133
+ P +AK + G+ ++ D + ++E +K+ K
Sbjct: 1260 EAIRPACNDDCMAKYDAGEPLSEGDQQWREEFEPFYKKEDGELSK 1304
>gnl|CDD|184833 PRK14820, PRK14820, NADH dehydrogenase subunit B; Provisional.
Length = 180
Score = 27.1 bits (60), Expect = 3.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 67 DKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAE 125
D R+ +E S++P +Q + +G IAK++ P +K Y QMAE
Sbjct: 58 DLARFGSERPSFSP---------RQADMLMVMGTIAKKMA-------PVLKQVYLQMAE 100
>gnl|CDD|188126 TIGR01283, nifE, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifE. This protein is part of the NifEN complex
involved in biosynthesis of the molybdenum-iron cofactor
used by the homologous NifDK complex of nitrogenase. In
a few species, the protein is found as a NifEN fusion
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 453
Score = 27.3 bits (61), Expect = 4.2
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 96 YGVGDIAKELGKKWAD--VDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
YG+ D +K L + AD DP + + E++ +++A+ + Y+ R
Sbjct: 274 YGIEDTSKAL-RDIADLFGDPELLKRTEELIAREEAKIRPALEPYRER 320
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 26.7 bits (59), Expect = 6.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 46 AERWKTMSEKEKKRFHEMADKDKK 69
E +K + + E+++F EM D KK
Sbjct: 266 VEEYKKLQKYEQQKFKEMIDDIKK 289
>gnl|CDD|238935 cd01976, Nitrogenase_MoFe_alpha, Nitrogenase_MoFe_alpha_II:
Nitrogenase MoFe protein, beta subunit. A group of
proteins similar to the alpha subunit of the MoFe
protein of the molybdenum (Mo-) nitrogenase. The
nitrogenase enzyme catalyzes the ATP-dependent reduction
of dinitrogen to ammonia. The Mo-nitrogenase is the most
widespread and best characterized of these systems.
Mo-nitrogenase consists of the MoFe protein (component
1) and the Fe protein (component 2). MoFe is an
alpha2beta2 tetramer. Each alphabeta pair of MoFe
contains one P-cluster (at the alphabeta interface) and,
one molecule of iron molybdenum cofactor (FeMoco)
contained within the alpha subunit. The Fe protein
contains a single [4Fe-4S] cluster. Electrons are
transferred from the [4Fe-4S] cluster of the Fe protein
to the P-cluster of the MoFe and in turn to FeMoCo, the
site of substrate reduction.
Length = 421
Score = 26.1 bits (58), Expect = 8.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 96 YGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
+G IA+ L K A D + K E++ + K E + Y+ R
Sbjct: 252 FGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPR 297
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.126 0.363
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,024,711
Number of extensions: 717524
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 85
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.1 bits)