RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3264
(156 letters)
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 60.7 bits (147), Expect = 8e-14
Identities = 49/71 (69%), Positives = 61/71 (85%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KPRG+M++YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWKTMS KEK +F +MA D
Sbjct: 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60
Query: 68 KKRYDTEMQSY 78
K RY+ EM++Y
Sbjct: 61 KARYEREMKTY 71
Score = 42.2 bits (99), Expect = 7e-07
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 84 EKRGKIKQDNPEYGV--GDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
R + K+ +P+ V + +K+ ++W + K K+E MA+ DKARYE+EM Y
Sbjct: 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 50.6 bits (121), Expect = 7e-10
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
P+ +A+ F R + K +HP + + +KK E W + +K+ + + A K
Sbjct: 2 APKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQPYEKKAAKL 59
Query: 68 KKRYDTEMQSY 78
K++Y+ ++ +Y
Sbjct: 60 KEKYEKDIAAY 70
Score = 47.1 bits (112), Expect = 2e-08
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
E R KIK ++P +GD+AK+LG+ W + K YE+ A K K +YEK++ AY+ +
Sbjct: 16 EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 73
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 47.5 bits (113), Expect = 7e-09
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
KP+ ++AY ++ RE K+++P E +K+ E W+ M +K + + A K
Sbjct: 3 KPKRPLSAYMLWLNSARESIKRENPGIK--VTEVAKRGGELWRAMKDKSE--WEAKAAKA 58
Query: 68 KKRYDTEMQSY 78
K YD ++ +
Sbjct: 59 KDDYDRAVKEF 69
Score = 44.4 bits (105), Expect = 1e-07
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKN 140
R IK++NP V ++AK G+ W K+++E A K K Y++ + ++
Sbjct: 17 SARESIKRENPGIKVTEVAKRGGELWRA--MKDKSEWEAKAAKAKDDYDRAVKEFEA 71
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 47.6 bits (113), Expect = 1e-08
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 3 KEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHE 62
K KP+ ++A F + R + +++ PE + +E ++ A W +SEK+K ++
Sbjct: 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELS--ESELTRLLARMWNDLSEKKKAKYKA 72
Query: 63 MADKDKKRYDTEMQSYT 79
K + + + +
Sbjct: 73 REAALKAQSERKSGPSS 89
Score = 41.9 bits (98), Expect = 1e-06
Identities = 17/87 (19%), Positives = 36/87 (41%)
Query: 53 SEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADV 112
S K E ++ + + + EKR +++++ PE ++ + L + W D+
Sbjct: 3 SGSSGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYK 139
K KY+ KA+ E++
Sbjct: 63 SEKKKAKYKAREAALKAQSERKSGPSS 89
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 47.2 bits (112), Expect = 2e-08
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
P+ ++AY FF R+ + ++P ++ F + KK E+WK ++ +EK+ + A D
Sbjct: 20 APKRALSAYMFFANENRDIVRSENP--DITFGQVGKKLGEKWKALTPEEKQPYEAKAQAD 77
Query: 68 KKRYDTEMQSY 78
KKRY++E + Y
Sbjct: 78 KKRYESEKELY 88
Score = 43.3 bits (102), Expect = 5e-07
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 53 SEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADV 112
+ +E K+ KD + +Y A E R ++ +NP+ G + K+LG+KW +
Sbjct: 3 TPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKAL 62
Query: 113 DPSVKTKYEQMAEKDKARYEKEMTAYK 139
P K YE A+ DK RYE E Y
Sbjct: 63 TPEEKQPYEAKAQADKKRYESEKELYN 89
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 46.7 bits (111), Expect = 2e-08
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYK 139
+R K+ Q+NP+ +I+K LG +W + + K + A++ +A + KE YK
Sbjct: 16 GQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK 71
Score = 42.1 bits (99), Expect = 1e-06
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
+ + M A+ + + R + +++P+ + +E SK+ WK +SE EK+ F + A +
Sbjct: 2 RVKRPMNAFMVWSRGQRRKMAQENPKMH--NSEISKRLGAEWKLLSETEKRPFIDEAKRL 59
Query: 68 KKRYDTEMQSY 78
+ + E Y
Sbjct: 60 RALHMKEHPDY 70
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 47.2 bits (112), Expect = 2e-08
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
+ M Y F Q + H E + RW+ +S+ +K+ + ++A++
Sbjct: 8 PKKPPMNGYQKFSQELLSNGELNHLP----LKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63
Query: 68 KKRYDTEMQSYTPPAGEKR 86
+++Y + + +
Sbjct: 64 QRQYKVHLDLWVKSLSPQD 82
Score = 41.0 bits (96), Expect = 4e-06
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
E + ++ + + E+G +W + S K Y+++AE+ + +Y+ + +
Sbjct: 22 ELLSNGELNHLP--LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS 77
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 43.3 bits (102), Expect = 3e-07
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAY 138
++R KI Q P+ +I+K LG +W + K Y + + ++ ++ Y
Sbjct: 16 DERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70
Score = 42.9 bits (101), Expect = 5e-07
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
M A+ + + R + + P+ + + SK RWK M+ EK+ ++E + K++
Sbjct: 7 MNAFMVWAKDERRKILQAFPDMH--NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHL 64
Query: 73 TEMQSY 78
+ Y
Sbjct: 65 EKYPDY 70
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 43.0 bits (101), Expect = 6e-07
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
P+ +T Y F R ++ K HPE + + +K ++++K + EK+K ++ + ++
Sbjct: 10 FPKKPLTPYFRFFMEKRAKYAKLHPEMS--NLDLTKILSKKYKELPEKKKMKYIQDFQRE 67
Query: 68 KKRYDTEMQSY 78
K+ ++ + +
Sbjct: 68 KQEFERNLARF 78
Score = 40.3 bits (94), Expect = 7e-06
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
EKR K + +PE D+ K L KK+ ++ K KY Q +++K +E+ + ++
Sbjct: 24 EKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 42.5 bits (100), Expect = 7e-07
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
E R + ++ I + LG++W + + KY ++A K++ + + + R
Sbjct: 16 EMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73
Score = 37.9 bits (88), Expect = 4e-05
Identities = 11/76 (14%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 13 MTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYD 72
+ A+ +++ R + + A ++ RW +S +E+ +++E+A K+++ +
Sbjct: 7 LNAFMLYMKEMRANVVAESTLKE--SAAINQILGRRWHALSREEQAKYYELARKERQLHM 64
Query: 73 TEMQSYTPPAGEKRGK 88
++ + K
Sbjct: 65 QLYPGWSARDNYGKKK 80
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 42.5 bits (100), Expect = 8e-07
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 84 EKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
++R K+ +NP +I+K+LG +W + + K + Q A+K +A + ++ YK R
Sbjct: 18 DQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75
Score = 40.2 bits (94), Expect = 5e-06
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 8 KPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKD 67
+ + M A+ + + R + ++P +E SK+ +WK ++E EK F + A K
Sbjct: 4 RVKRPMNAFIVWSRDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 68 KKRYDTEMQSY 78
+ + + +Y
Sbjct: 62 QAMHREKYPNY 72
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 40.3 bits (94), Expect = 8e-06
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 2 PKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFH 61
K + +Y+ + K E C+++WK +S+KEK +H
Sbjct: 11 DKFDGRPTKPPPNSYSLYCAELMANMKDVP------STERMVLCSQQWKLLSQKEKDAYH 64
Query: 62 EMADKDKKRYDTEMQSY 78
+ D+ KK Y+ E+ +
Sbjct: 65 KKCDQKKKDYEVELLRF 81
Score = 37.2 bits (86), Expect = 1e-04
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 88 KIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNR 141
++ + + + ++W + K Y + ++ K YE E+ +
Sbjct: 31 ELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLES 84
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.4 bits (56), Expect = 1.0
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 90 KQDNPEYGVGDIAKELGKKWADV--DPSVKTKY 120
QD G G + EL W DV D Y
Sbjct: 25 DQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSY 57
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 26.7 bits (58), Expect = 1.1
Identities = 16/140 (11%), Positives = 40/140 (28%), Gaps = 2/140 (1%)
Query: 18 FFVQVCREEHKKKHPEE-NVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQ 76
+ R +K + + E ++ + ++KR+ ++
Sbjct: 62 ILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLK 121
Query: 77 SYTPPAGEKRGKIKQDNPEYGVGDIAKEL-GKKWADVDPSVKTKYEQMAEKDKARYEKEM 135
+ E K ++ + G VD + E+ D ++ E+
Sbjct: 122 AGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCEL 181
Query: 136 TAYKNRSVAPVNEEADEEDD 155
+ R+ EA +
Sbjct: 182 EEQRERARKHFKVEAKKVKP 201
>d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta
subunit, domain 1 {Propionibacterium freudenreichii,
subsp. shermanii [TaxId: 1744]}
Length = 460
Score = 25.1 bits (54), Expect = 4.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 32 PEENVVFAEFSKKCAERWKTMSEKE--KKRFHEMADKDKKRYDT 73
P + +F K E+W+ EK + R E +
Sbjct: 3 PTTLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKR 46
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 25.1 bits (55), Expect = 4.8
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 47 ERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYT 79
E+++ ++ E + A + + M +
Sbjct: 279 EQYRDRAQTEPAAVVKAAKQSMAVHVQAMLDFQ 311
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 345
Score = 24.8 bits (53), Expect = 5.2
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 5/60 (8%)
Query: 9 PRGRMTA-----YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEM 63
P R+ + + Q + E E+ K + +E RF
Sbjct: 283 PHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPG 342
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 23.9 bits (51), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 49 WKTMSEKEKKRFHEMADKDKKRYDTEM-QSYTPPAGEKRGK 88
W M +KEK + + A +D+KRY+ E+ + PPA K
Sbjct: 41 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSK 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.126 0.363
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,575
Number of extensions: 28046
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 53
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.2 bits)