Diaphorina citri psyllid: psy3264

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYEQMAEKDKARYEKEMTAYKNRSVAPVNEEADEEDDE
ccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
**********GRMTAYAFFVQVCRE**********VVFAEFSKKC********************KDKKRYDTEMQSYTPPA****************GDIAKELGKKW*********KYEQMAEKDKARYEKEM*********************
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MPKEKDVKPRGRMTAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKTMSEKEKKRFHEMADKDKKRYDTEMQSYTPPAGEKRGKIKQDNPEYGVGDIAKELGKKWADVDPSVKTKYxxxxxxxxxxxxxxxxxxxxxSVAPVNEEADEEDDE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
High mobility group protein 1 homolog Binds preferentially single-stranded DNA and unwinds double stranded DNA.confidentP40644
High mobility group protein B2 DNA binding proteins that associates with chromatin and has the ability to bend DNA. Binds preferentially single-stranded DNA. Involved in V(D)J recombination by acting as a cofactor of the RAG complex. Acts by stimulating cleavage and RAG protein binding at the 23 bp spacer of conserved recombination signal sequences (RSS).confidentP40673
High mobility group protein B2 DNA binding proteins that associates with chromatin and has the ability to bend DNA. Binds preferentially single-stranded DNA. Involved in V(D)J recombination by acting as a cofactor of the RAG complex. Acts by stimulating cleavage and RAG protein binding at the 23 bp spacer of conserved recombination signal sequences (RSS).confidentP17741

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0033151 [BP]V(D)J recombinationprobableGO:0090304, GO:0034641, GO:0006807, GO:0007275, GO:0044699, GO:0006139, GO:0044260, GO:0071704, GO:1901360, GO:0002200, GO:0046483, GO:0032502, GO:0032501, GO:0044238, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0002520, GO:0006310, GO:0002562, GO:0044707, GO:0048856, GO:0044237, GO:0043170, GO:0002376, GO:0006259, GO:0048731, GO:0016444
GO:0017055 [BP]negative regulation of RNA polymerase II transcriptional preinitiation complex assemblyprobableGO:0060260, GO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0051129, GO:0051128, GO:0010629, GO:0050789, GO:0044699, GO:0010605, GO:0019222, GO:0000122, GO:2000112, GO:2000113, GO:0019219, GO:0006357, GO:0065007, GO:0048519, GO:0010468, GO:0044087, GO:0045934, GO:0010556, GO:0060255, GO:0009987, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:0051172, GO:2001141, GO:0043254, GO:0045898, GO:0051253, GO:0051252, GO:0044763, GO:0006355, GO:2000142, GO:0045892, GO:0010558, GO:0048523
GO:0043388 [BP]positive regulation of DNA bindingprobableGO:0051099, GO:0051098, GO:0051101, GO:0065007, GO:0044093, GO:0008150, GO:0065009
GO:0008301 [MF]DNA binding, bendingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0003690 [MF]double-stranded DNA bindingprobableGO:0043566, GO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0003697 [MF]single-stranded DNA bindingprobableGO:0043566, GO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0006265 [BP]DNA topological changeprobableGO:0071103, GO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0034641, GO:0006807, GO:0008150, GO:0008152, GO:0006259, GO:1901360, GO:0046483
GO:0005700 [CC]polytene chromosomeprobableGO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0005694, GO:0043226
GO:0003684 [MF]damaged DNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0048468 [BP]cell developmentprobableGO:0032502, GO:0048856, GO:0048869, GO:0030154, GO:0044767, GO:0044763, GO:0008150, GO:0009987, GO:0044699
GO:0050930 [BP]induction of positive chemotaxisprobableGO:0040012, GO:0032103, GO:0040017, GO:0032101, GO:0048584, GO:0048583, GO:0050795, GO:0050789, GO:0008150, GO:0050926, GO:0050927, GO:0050920, GO:0050921, GO:0048518, GO:0065007, GO:0048520
GO:0006288 [BP]base-excision repair, DNA ligationprobableGO:0051103, GO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0006266, GO:0044699, GO:0006284, GO:0006281, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0050831 [BP]male-specific defense response to bacteriumprobableGO:0009607, GO:0050896, GO:0009617, GO:0006952, GO:0006950, GO:0008150, GO:0042742, GO:0051707, GO:0051704
GO:0044212 [MF]transcription regulatory region DNA bindingprobableGO:0097159, GO:0000975, GO:0001067, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0050786 [MF]RAGE receptor bindingprobableGO:0005102, GO:0003674, GO:0005488, GO:0005515
GO:0016605 [CC]PML bodyprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0032075 [BP]positive regulation of nuclease activityprobableGO:0032069, GO:0051336, GO:0080090, GO:0051345, GO:0065009, GO:0060255, GO:0050790, GO:0031323, GO:0050794, GO:0019219, GO:0065007, GO:0051171, GO:0044093, GO:0008150, GO:0019222, GO:0050789, GO:0043085
GO:0000402 [MF]crossed form four-way junction DNA bindingprobableGO:0000400, GO:0097159, GO:0000217, GO:0043566, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0000401 [MF]open form four-way junction DNA bindingprobableGO:0000400, GO:0097159, GO:0000217, GO:0043566, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0002053 [BP]positive regulation of mesenchymal cell proliferationprobableGO:0008284, GO:0042127, GO:0050794, GO:0050789, GO:0010464, GO:0065007, GO:2000648, GO:0048518, GO:0008150, GO:0072091, GO:0048522
GO:0031493 [MF]nucleosomal histone bindingprobableGO:0042393, GO:0031491, GO:0003674, GO:0005488, GO:0005515, GO:0003682
GO:0043565 [MF]sequence-specific DNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0006978 [BP]DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediatorprobableGO:0044700, GO:0051716, GO:0030330, GO:0042772, GO:0050896, GO:0009987, GO:0008150, GO:0044699, GO:0050794, GO:0006974, GO:0006950, GO:0065007, GO:0044763, GO:0007165, GO:0033554, GO:0007154, GO:0035556, GO:0023052, GO:0072331, GO:0050789, GO:0042770
GO:0006338 [BP]chromatin remodelingprobableGO:0006996, GO:0051276, GO:0006325, GO:0071840, GO:0009987, GO:0016043, GO:0044763, GO:0044699, GO:0008150, GO:0016568
GO:0005615 [CC]extracellular spaceprobableGO:0005575, GO:0005576, GO:0044421
GO:0050727 [BP]regulation of inflammatory responseprobableGO:0032101, GO:0080134, GO:0048583, GO:0065007, GO:0008150, GO:0050789, GO:0031347
GO:0033034 [BP]positive regulation of myeloid cell apoptotic processprobableGO:0050789, GO:0050794, GO:0043065, GO:0048518, GO:0043067, GO:0065007, GO:0048522, GO:0010942, GO:0008150, GO:0010941, GO:0042981, GO:0043068, GO:0033032
GO:0032526 [BP]response to retinoic acidprobableGO:1901700, GO:0033993, GO:0050896, GO:0008150, GO:0042221, GO:0010033
GO:0000793 [CC]condensed chromosomeprobableGO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0005694, GO:0043226
GO:0045654 [BP]positive regulation of megakaryocyte differentiationprobableGO:0051094, GO:0050793, GO:0045652, GO:0065007, GO:0050794, GO:0045597, GO:0050789, GO:0045595, GO:0045639, GO:0002682, GO:0008150, GO:0051239, GO:0048518, GO:2000026, GO:0045637, GO:0048522
GO:0048471 [CC]perinuclear region of cytoplasmprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0050918 [BP]positive chemotaxisprobableGO:0040011, GO:0006935, GO:0009605, GO:0050896, GO:0042330, GO:0008150, GO:0042221
GO:0046983 [MF]protein dimerization activityprobableGO:0003674, GO:0005488, GO:0005515
GO:0009409 [BP]response to coldprobableGO:0009628, GO:0006950, GO:0008150, GO:0050896, GO:0009266
GO:0035218 [BP]leg disc developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0007444, GO:0048856, GO:0044767, GO:0048513, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0017053 [CC]transcriptional repressor complexprobableGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0003700 [MF]sequence-specific DNA binding transcription factor activityprobableGO:0003674, GO:0001071
GO:0001938 [BP]positive regulation of endothelial cell proliferationprobableGO:0008284, GO:0042127, GO:0050678, GO:0050679, GO:0050794, GO:0065007, GO:0048518, GO:0008150, GO:0001936, GO:0050789, GO:0048522
GO:0051091 [BP]positive regulation of sequence-specific DNA binding transcription factor activityprobableGO:0009889, GO:0051090, GO:0019219, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0051252, GO:2000112, GO:0050794, GO:0050789, GO:0006355, GO:0010556, GO:0065007, GO:0051171, GO:0044093, GO:2001141, GO:0008150, GO:0065009, GO:0010468
GO:0019904 [MF]protein domain specific bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0043433 [BP]negative regulation of sequence-specific DNA binding transcription factor activityprobableGO:0009889, GO:0051090, GO:0019219, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0044092, GO:2000112, GO:0050794, GO:0050789, GO:0006355, GO:0010556, GO:0065007, GO:0051171, GO:2001141, GO:0008150, GO:0065009, GO:0051252, GO:0010468
GO:0007379 [BP]segment specificationprobableGO:0032502, GO:0007389, GO:0032501, GO:0044707, GO:0008150, GO:0003002, GO:0035282, GO:0007275, GO:0044699
GO:0034097 [BP]response to cytokine stimulusprobableGO:0042221, GO:0050896, GO:0008150, GO:0010033
GO:0008097 [MF]5S rRNA bindingprobableGO:0097159, GO:0019843, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0001773 [BP]myeloid dendritic cell activationprobableGO:0009987, GO:0002274, GO:0002376, GO:0045321, GO:0001775, GO:0044763, GO:0008150, GO:0044699
GO:0017025 [MF]TBP-class protein bindingprobableGO:0008134, GO:0003674, GO:0005488, GO:0005515
GO:0034399 [CC]nuclear peripheryprobableGO:0005575, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0042277 [MF]peptide bindingprobableGO:0033218, GO:0003674, GO:0005488
GO:0003713 [MF]transcription coactivator activityprobableGO:0003674, GO:0003712, GO:0000989, GO:0000988
GO:0002407 [BP]dendritic cell chemotaxisprobableGO:0006928, GO:0050900, GO:0051674, GO:0070887, GO:0060326, GO:0044699, GO:0051716, GO:0042330, GO:0016477, GO:0030595, GO:0006935, GO:0009987, GO:0044763, GO:0042221, GO:0051179, GO:0040011, GO:0036336, GO:0009605, GO:0048870, GO:0050896, GO:0002376, GO:0008150
GO:0009986 [CC]cell surfaceprobableGO:0005575, GO:0044464, GO:0005623
GO:0048545 [BP]response to steroid hormone stimulusprobableGO:0009719, GO:0033993, GO:0050896, GO:0008150, GO:0009725, GO:0042221, GO:0010033, GO:0014070
GO:0042056 [MF]chemoattractant activityprobableGO:0003674
GO:0071310 [BP]cellular response to organic substanceprobableGO:0051716, GO:0050896, GO:0009987, GO:0008150, GO:0044763, GO:0070887, GO:0042221, GO:0010033, GO:0044699
GO:0030335 [BP]positive regulation of cell migrationprobableGO:0051272, GO:0030334, GO:0040017, GO:0040012, GO:0008150, GO:0051270, GO:2000145, GO:2000147, GO:0048518, GO:0065007, GO:0032879, GO:0050794, GO:0050789, GO:0048522
GO:0003714 [MF]transcription corepressor activityprobableGO:0003674, GO:0003712, GO:0000989, GO:0000988
GO:0043280 [BP]positive regulation of cysteine-type endopeptidase activity involved in apoptotic processprobableGO:0019222, GO:2001056, GO:0007569, GO:0010941, GO:0042981, GO:0050789, GO:0043085, GO:0051345, GO:2000116, GO:0043067, GO:0065007, GO:0044699, GO:0044093, GO:0043281, GO:0065009, GO:0010259, GO:0009987, GO:0052547, GO:0052548, GO:0006915, GO:0050794, GO:0012501, GO:0044763, GO:0010950, GO:0010952, GO:0051336, GO:0050790, GO:0008150
GO:0032392 [BP]DNA geometric changeprobableGO:0071103, GO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0034641, GO:0006807, GO:0008150, GO:0008152, GO:0006259, GO:1901360, GO:0046483
GO:0051861 [MF]glycolipid bindingprobableGO:0003674, GO:0008289, GO:0005488
GO:0045931 [BP]positive regulation of mitotic cell cycleprobableGO:0007346, GO:0045787, GO:0051726, GO:0050794, GO:0065007, GO:0048518, GO:0008150, GO:0050789, GO:0048522
GO:0045648 [BP]positive regulation of erythrocyte differentiationprobableGO:0051094, GO:0050793, GO:0045646, GO:0065007, GO:0032844, GO:0045597, GO:0050789, GO:0045595, GO:0045639, GO:0002682, GO:0008150, GO:0051239, GO:0048518, GO:2000026, GO:0050794, GO:0045637, GO:0048522
GO:0032897 [BP]negative regulation of viral transcriptionprobableGO:0009892, GO:0080090, GO:0009890, GO:2000242, GO:0031326, GO:2000241, GO:0031323, GO:0050789, GO:0010605, GO:0019222, GO:0031327, GO:0065007, GO:0046782, GO:0048518, GO:0048519, GO:0031324, GO:0045934, GO:0019219, GO:0050792, GO:0009889, GO:0050794, GO:0043902, GO:0043900, GO:0008150, GO:0051171, GO:0051172, GO:2001141, GO:0060255, GO:0051253, GO:0051252, GO:0010556, GO:0048524, GO:0010558, GO:0048523, GO:0048522
GO:0008156 [BP]negative regulation of DNA replicationprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0050789, GO:0045934, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0060255, GO:0065007, GO:0048519, GO:0051053, GO:0051052, GO:0019219, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:0051172, GO:0006275, GO:0010556, GO:0010558, GO:0048523
GO:0043392 [BP]negative regulation of DNA bindingprobableGO:0051098, GO:0051101, GO:0051100, GO:0065007, GO:0044092, GO:0008150, GO:0065009
GO:0045638 [BP]negative regulation of myeloid cell differentiationprobableGO:0051093, GO:0050793, GO:0050794, GO:0050789, GO:0045596, GO:0045595, GO:0065007, GO:2000026, GO:0008150, GO:0051239, GO:0048519, GO:0002682, GO:0045637, GO:0048523
GO:0005886 [CC]plasma membraneprobableGO:0005575, GO:0044464, GO:0016020, GO:0071944, GO:0005623
GO:0045944 [BP]positive regulation of transcription from RNA polymerase II promoterprobableGO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0051171, GO:0009891, GO:2000112, GO:0019219, GO:0010556, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0045893, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0006357, GO:0048522
GO:0003681 [MF]bent DNA bindingprobableGO:0043566, GO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0032496 [BP]response to lipopolysaccharideprobableGO:1901700, GO:0009607, GO:0033993, GO:0050896, GO:0009617, GO:0008150, GO:0002237, GO:0042221, GO:0051707, GO:0010033, GO:0051704
GO:0007399 [BP]nervous system developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0045578 [BP]negative regulation of B cell differentiationprobableGO:0050869, GO:0050865, GO:0050864, GO:0050866, GO:0065007, GO:0050789, GO:0051249, GO:0002694, GO:0002682, GO:0002683, GO:0048519, GO:0050793, GO:0045577, GO:0050794, GO:0045596, GO:0045595, GO:0008150, GO:0051239, GO:0045620, GO:0051093, GO:0051250, GO:0002695, GO:1902106, GO:1902105, GO:2000026, GO:0045619, GO:0048523

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1AAB, chain A
Confidence level:very confident
Coverage over the Query: 2-82
View the alignment between query and template
View the model in PyMOL
Template: 2YRQ, chain A
Confidence level:very confident
Coverage over the Query: 1-142
View the alignment between query and template
View the model in PyMOL