BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3267
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 35/37 (94%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYA+FVQ CREEHKKKHP+E V+FAEFS+KCAERWK+
Sbjct: 185 AYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKT 221
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWK+
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKT 51
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWK+
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKT 51
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWK+
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKT 51
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWK+
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKT 51
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YAFFVQ CREEHKKKHP+ +V FAEFSKKC+ERWK+
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKT 51
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2
SV=2
Length = 207
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%)
Query: 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
NK + +YA+FVQ CREEHKKKHP+ +V FAEFS+KC+ERWK+
Sbjct: 7 NKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKT 51
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1
PE=2 SV=3
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2
SV=3
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1
PE=3 SV=1
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 51
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT 51
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT 51
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT 51
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2
SV=2
Length = 202
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKKK+PE V FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKT 51
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKKK+P+ + FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKT 51
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YA+FVQ REEHKKKHPE +V F+EFSKKC+ERWK+
Sbjct: 14 SYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKT 50
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKH + +V F+EFS KC+ERWK+
Sbjct: 15 SYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKT 51
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2
SV=2
Length = 201
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYAFFVQ CREEHKK +PE V FAEFSKKC+ERWK+
Sbjct: 15 AYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKT 50
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 12 YAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
Y FFV++C EEHKKK+P ENV E SKKC+E+WK+
Sbjct: 52 YGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog OS=Strongylocentrotus
purpuratus GN=HMG1 PE=2 SV=1
Length = 200
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AYA+FVQ R EH K HP V FAEFSK C+ RWK+
Sbjct: 17 AYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKA 53
>sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100 PE=1 SV=3
Length = 879
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 15 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
V C EEHKKK+P+ +V F+EF KKC+E WK+
Sbjct: 694 LVDPC-EEHKKKNPDASVKFSEFLKKCSETWKT 725
>sp|Q9N1Q6|SP100_GORGO Nuclear autoantigen Sp-100 (Fragment) OS=Gorilla gorilla gorilla
GN=SP100 PE=2 SV=1
Length = 225
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 15 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
V C EEHKKK+P+ +V F+EF KKC+E WK+
Sbjct: 43 LVDPC-EEHKKKNPDASVKFSEFLKKCSEMWKT 74
>sp|Q9N1Q7|SP100_PANTR Nuclear autoantigen Sp-100 (Fragment) OS=Pan troglodytes GN=SP100
PE=2 SV=1
Length = 215
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 15 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
V C EEHKKK+P+ +V F+EF KK +E WK+
Sbjct: 49 LVDPC-EEHKKKNPDASVKFSEFLKKRSEMWKT 80
>sp|Q9N1Q5|SP100_HYLLA Nuclear autoantigen Sp-100 (Fragment) OS=Hylobates lar GN=SP100
PE=2 SV=1
Length = 242
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 23 HKKKHPEENVVFAEFSKKCAERWKS 47
HKKK+P+ +V +EF KKC+E WK+
Sbjct: 75 HKKKNPDASVNLSEFLKKCSEMWKT 99
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+Y F+ R + K++ P V F EFS+KC+E+W+S
Sbjct: 15 SYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRS 51
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+Y F+ R + K++ P + F EFS+KC+E+W+S
Sbjct: 15 SYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRS 51
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+Y F+ R + K++ P + F EFS+KC+E+W+S
Sbjct: 15 SYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRS 51
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 32 VVFAEFSKKCAERWKS 47
V F+EFSKKC+ERWK+
Sbjct: 1 VNFSEFSKKCSERWKT 16
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 13 AFFVQVC--REEHKKKHPEENVVFAEFSKKCAERWK--SSRIVNPFVGR 57
AFFV + RE++KK HP N A K C E WK S P+V R
Sbjct: 51 AFFVFMADFREQYKKDHPN-NKSVAAVGKACGEEWKSLSEEEKAPYVDR 98
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWK 46
+ FF Q+ R+ KK+HP + F E K ++W+
Sbjct: 568 GFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDKWR 601
>sp|P03567|REP_TGMVY Replication-associated protein OS=Tomato golden mosaic virus
(strain Yellow vein) GN=AC1 PE=1 SV=1
Length = 352
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 15 FVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNPFVGRKFAP 61
F+++CRE H+ P +V+ K C + + +V+P F P
Sbjct: 44 FIKICRELHEDGQPHLHVLIQFEGKYCCQNQRFFDLVSPTRSAHFHP 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,926,866
Number of Sequences: 539616
Number of extensions: 1243750
Number of successful extensions: 3718
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3674
Number of HSP's gapped (non-prelim): 47
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)