Query psy3267
Match_columns 105
No_of_seqs 112 out of 317
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:40:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrq_A High mobility group pro 99.9 2.8E-27 9.5E-32 171.7 6.1 95 1-95 12-143 (173)
2 3tmm_A Transcription factor A, 99.9 3.3E-25 1.1E-29 169.6 1.4 92 1-95 38-184 (238)
3 3tq6_A Transcription factor A, 99.9 4.9E-25 1.7E-29 166.5 2.1 91 2-95 7-152 (214)
4 2gzk_A Sex-determining region 99.9 2E-23 6.9E-28 149.0 6.2 92 2-95 2-130 (159)
5 2d7l_A WD repeat and HMG-box D 99.8 2.2E-20 7.5E-25 123.5 4.3 54 1-55 2-57 (81)
6 2eqz_A High mobility group pro 99.8 3.3E-20 1.1E-24 121.8 4.1 53 1-53 12-64 (86)
7 1aab_A High mobility group pro 99.8 3.6E-20 1.2E-24 120.5 1.4 53 1-53 4-56 (83)
8 1ckt_A High mobility group 1 p 99.8 4.4E-19 1.5E-23 111.8 6.0 50 4-53 1-50 (71)
9 1hme_A High mobility group pro 99.7 3.2E-18 1.1E-22 109.4 5.7 51 1-53 3-53 (77)
10 1wgf_A Upstream binding factor 99.7 3.8E-18 1.3E-22 113.1 4.1 50 1-52 17-66 (90)
11 1wxl_A Single-strand recogniti 99.7 9.2E-18 3.1E-22 107.0 5.5 52 2-55 1-52 (73)
12 2crj_A SWI/SNF-related matrix- 99.7 8.8E-18 3E-22 111.5 5.0 51 1-53 4-54 (92)
13 2lhj_A High mobility group pro 99.7 2.4E-18 8.1E-23 115.3 2.1 56 1-56 19-76 (97)
14 1hry_A Human SRY; DNA, DNA-bin 99.7 3.8E-18 1.3E-22 108.9 2.9 51 1-53 1-51 (76)
15 2e6o_A HMG box-containing prot 99.7 3.9E-18 1.3E-22 112.3 2.9 70 1-82 14-85 (87)
16 1l8y_A Upstream binding factor 99.7 8.7E-18 3E-22 114.5 4.6 52 1-55 1-54 (91)
17 2cs1_A PMS1 protein homolog 1; 99.7 8.4E-18 2.9E-22 111.6 4.2 53 1-55 4-58 (92)
18 3nm9_A HMG-D, high mobility gr 99.7 1E-17 3.5E-22 106.7 4.4 52 2-55 1-52 (73)
19 1k99_A Upstream binding factor 99.7 1.3E-17 4.3E-22 112.8 4.8 51 1-53 7-57 (99)
20 1j46_A SRY, sex-determining re 99.7 1.9E-17 6.6E-22 108.3 4.3 51 1-53 1-51 (85)
21 2co9_A Thymus high mobility gr 99.7 3.2E-17 1.1E-21 111.0 4.2 51 1-53 14-64 (102)
22 1i11_A Transcription factor SO 99.7 5.6E-17 1.9E-21 104.9 4.4 70 2-83 2-73 (81)
23 1wz6_A HMG-box transcription f 99.7 3.5E-17 1.2E-21 106.0 3.5 51 1-53 4-54 (82)
24 4euw_A Transcription factor SO 99.6 1.4E-16 4.9E-21 108.7 4.1 51 1-53 26-76 (106)
25 1cg7_A Protein (NON histone pr 99.6 2.4E-17 8.2E-22 109.8 -0.3 51 1-53 17-67 (93)
26 3f27_D Transcription factor SO 99.6 2.1E-16 7.1E-21 102.2 3.7 50 2-53 4-53 (83)
27 4a3n_A Transcription factor SO 99.6 1.8E-16 6.1E-21 99.3 3.2 49 3-53 1-49 (71)
28 1gt0_D Transcription factor SO 99.6 2.7E-16 9.2E-21 101.3 3.7 49 3-53 1-49 (80)
29 3fgh_A Transcription factor A, 99.6 1.3E-16 4.3E-21 100.0 1.7 45 3-53 1-45 (67)
30 2cto_A Novel protein; high mob 99.6 8.7E-17 3E-21 109.3 0.6 51 1-55 7-62 (93)
31 2gzk_A Sex-determining region 99.6 1.2E-15 4.2E-20 108.6 4.3 51 1-53 85-135 (159)
32 2lef_A LEF-1 HMG, protein (lym 99.6 1.5E-15 5.2E-20 99.2 3.8 48 4-53 2-49 (86)
33 2yrq_A High mobility group pro 99.6 2.4E-15 8.2E-20 108.8 5.2 51 1-53 98-148 (173)
34 3u2b_C Transcription factor SO 99.6 1.7E-15 6E-20 96.9 3.7 49 3-53 1-49 (79)
35 1v64_A Nucleolar transcription 99.5 1.4E-15 4.7E-20 104.6 2.2 49 1-55 13-64 (108)
36 2yuk_A Myeloid/lymphoid or mix 99.5 4.8E-16 1.6E-20 105.5 -1.9 51 1-55 19-71 (90)
37 1v63_A Nucleolar transcription 99.5 1.3E-14 4.4E-19 98.6 2.6 49 2-55 6-57 (101)
38 3tmm_A Transcription factor A, 99.3 5.2E-13 1.8E-17 102.0 0.3 49 1-55 143-193 (238)
39 3tq6_A Transcription factor A, 99.2 2.9E-13 1E-17 101.9 -1.7 49 1-55 111-161 (214)
40 2yuk_A Myeloid/lymphoid or mix 98.7 1.9E-09 6.7E-14 72.8 -0.3 38 57-95 19-62 (90)
41 1wgf_A Upstream binding factor 98.4 9.8E-08 3.3E-12 62.7 3.1 40 56-95 16-62 (90)
42 2d7l_A WD repeat and HMG-box D 98.4 8.2E-08 2.8E-12 62.9 2.7 39 57-95 2-48 (81)
43 3nm9_A HMG-D, high mobility gr 98.4 8.6E-08 2.9E-12 60.4 2.6 36 60-95 7-45 (73)
44 1k99_A Upstream binding factor 98.4 1E-07 3.5E-12 63.9 3.1 40 56-95 6-52 (99)
45 1aab_A High mobility group pro 98.4 9.6E-08 3.3E-12 61.4 2.6 40 56-95 3-51 (83)
46 1wxl_A Single-strand recogniti 98.4 1.1E-07 3.8E-12 59.9 2.6 34 62-95 9-45 (73)
47 1hry_A Human SRY; DNA, DNA-bin 98.4 1.4E-07 4.8E-12 59.5 2.5 34 62-95 10-46 (76)
48 1hme_A High mobility group pro 98.4 1.3E-07 4.5E-12 59.8 2.3 39 57-95 3-48 (77)
49 2crj_A SWI/SNF-related matrix- 98.3 2E-07 6.8E-12 61.3 2.8 39 57-95 4-49 (92)
50 2eqz_A High mobility group pro 98.3 2.3E-07 7.9E-12 60.2 2.7 40 56-95 11-59 (86)
51 2e6o_A HMG box-containing prot 98.3 3.8E-07 1.3E-11 59.4 3.3 39 57-95 14-59 (87)
52 3u2b_C Transcription factor SO 98.3 3.8E-07 1.3E-11 57.7 2.9 37 59-95 5-44 (79)
53 2co9_A Thymus high mobility gr 98.3 3.3E-07 1.1E-11 61.5 2.7 40 56-95 13-59 (102)
54 4a3n_A Transcription factor SO 98.3 4.1E-07 1.4E-11 56.2 2.7 37 59-95 5-44 (71)
55 2cs1_A PMS1 protein homolog 1; 98.3 4.3E-07 1.5E-11 59.7 2.8 34 62-95 13-49 (92)
56 1cg7_A Protein (NON histone pr 98.3 3.4E-07 1.2E-11 60.4 2.3 40 56-95 16-62 (93)
57 1j46_A SRY, sex-determining re 98.2 4.4E-07 1.5E-11 58.7 2.6 35 61-95 9-46 (85)
58 1ckt_A High mobility group 1 p 98.2 4.5E-07 1.5E-11 56.3 2.5 36 60-95 5-45 (71)
59 1wz6_A HMG-box transcription f 98.2 6.2E-07 2.1E-11 57.4 2.9 34 62-95 13-49 (82)
60 3f27_D Transcription factor SO 98.2 6.4E-07 2.2E-11 57.2 2.7 37 59-95 9-48 (83)
61 1gt0_D Transcription factor SO 98.2 7.2E-07 2.5E-11 56.8 2.8 36 60-95 6-44 (80)
62 1i11_A Transcription factor SO 98.2 7.4E-07 2.5E-11 57.0 2.9 36 60-95 8-46 (81)
63 2lhj_A High mobility group pro 98.2 4.9E-07 1.7E-11 59.9 1.9 40 56-95 18-66 (97)
64 2lef_A LEF-1 HMG, protein (lym 98.2 7.5E-07 2.6E-11 57.6 2.7 37 59-95 5-44 (86)
65 3fgh_A Transcription factor A, 98.1 9E-07 3.1E-11 54.7 1.8 34 61-95 7-40 (67)
66 4euw_A Transcription factor SO 98.0 2E-06 7E-11 58.1 2.4 34 62-95 35-71 (106)
67 2cto_A Novel protein; high mob 97.5 5.3E-05 1.8E-09 50.9 2.6 34 62-95 16-53 (93)
68 1l8y_A Upstream binding factor 97.4 7.9E-05 2.7E-09 50.3 3.0 37 59-95 7-45 (91)
69 1v64_A Nucleolar transcription 97.3 0.00011 3.6E-09 50.0 2.4 33 62-95 23-55 (108)
70 1v63_A Nucleolar transcription 96.7 0.00064 2.2E-08 45.5 2.2 34 60-95 12-48 (101)
71 1ef4_A Subunit N, DNA-directed 42.1 7.6 0.00026 23.9 0.7 15 83-97 8-22 (55)
72 4ayb_N DNA-directed RNA polyme 34.0 10 0.00036 24.0 0.4 14 83-96 9-22 (66)
73 1wjt_A Transcription elongatio 32.7 68 0.0023 21.2 4.4 38 23-62 62-101 (103)
74 2o37_A Protein SIS1; HSP40, J- 25.0 78 0.0027 19.7 3.5 35 17-51 27-61 (92)
75 2och_A Hypothetical protein DN 24.4 88 0.003 18.4 3.5 35 17-51 27-61 (73)
76 1twf_J DNA-directed RNA polyme 24.3 15 0.0005 23.5 -0.2 16 83-98 9-24 (70)
No 1
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=171.70 Aligned_cols=95 Identities=38% Similarity=0.584 Sum_probs=84.1
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC-----------------------
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV----------------------- 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~----------------------- 55 (105)
+||+||||+|||++|++++|++++++||+.+++++||+|.||++|++|+++|+ |.
T Consensus 12 dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 91 (173)
T 2yrq_A 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 91 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 69999999999999999999999999999777899999999999999999852 22
Q ss_pred -----CCCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 56 -----GRKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 56 -----~e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
.++++| +||++||++.|+.|+.+||++ .|+.+||+.|...
T Consensus 92 ~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~l 143 (173)
T 2yrq_A 92 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 143 (173)
T ss_dssp SSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHS
T ss_pred hcccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 145666 999999999999999999998 5666799999764
No 2
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.90 E-value=3.3e-25 Score=169.65 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=82.0
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC-----------------------
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV----------------------- 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~----------------------- 55 (105)
+||+||||+|||++|++++|++|+++||+++ ++||+|+||++|++|+++|+ |.
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p 115 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 115 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4789999999999999999999999999996 79999999999999999852 32
Q ss_pred --------------------------CCCCCc----hHHHHhhhccchhhhhcCCcchhhhhhHhhHHHH
Q psy3267 56 --------------------------GRKFAP----VFLTFLSRMKDSILFCVNPVLAVGSRILEKFDEC 95 (105)
Q Consensus 56 --------------------------~e~~AP----sa~~~f~~~~r~~l~~~nP~l~v~~v~~~~~~~~ 95 (105)
.++++| |||++||++.|++|+++||+ .|+.+||+.|..+
T Consensus 116 ~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~-ei~k~lg~~Wk~l 184 (238)
T 3tmm_A 116 SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-EKLKTVKENWKNL 184 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhC
Confidence 024566 99999999999999999999 7999999999764
No 3
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.90 E-value=4.9e-25 Score=166.46 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=81.6
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC------------------------
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV------------------------ 55 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~------------------------ 55 (105)
||+||||+||||+|++++|++++++||+++ ++||+|+||++|++|+++|+ |.
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 789999999999999999999999999996 79999999999999999852 32
Q ss_pred -------------------------CCCCCc----hHHHHhhhccchhhhhcCCcchhhhhhHhhHHHH
Q psy3267 56 -------------------------GRKFAP----VFLTFLSRMKDSILFCVNPVLAVGSRILEKFDEC 95 (105)
Q Consensus 56 -------------------------~e~~AP----sa~~~f~~~~r~~l~~~nP~l~v~~v~~~~~~~~ 95 (105)
.++++| |||++||++.|++|.++||+ .|+.+||+.|..+
T Consensus 85 q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~-ei~k~lg~~Wk~l 152 (214)
T 3tq6_A 85 QIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-EKLKTVKENWKNL 152 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhhccCCHH-HHHHHHHHHHHcC
Confidence 024666 99999999999999999999 7999999999754
No 4
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.88 E-value=2e-23 Score=149.04 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=80.6
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--------------------CC------
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--------------------FV------ 55 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--------------------y~------ 55 (105)
|++||||++|||+|+++.|.+++.+||++ +++||||.||++|++||++++ |.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~--~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~ 79 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM--RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGET 79 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 78999999999999999999999999997 579999999999999999851 32
Q ss_pred ----CCCCCc----hHHHHhhhccchhhhhcCCcch---hhhhhHhhHHHH
Q psy3267 56 ----GRKFAP----VFLTFLSRMKDSILFCVNPVLA---VGSRILEKFDEC 95 (105)
Q Consensus 56 ----~e~~AP----sa~~~f~~~~r~~l~~~nP~l~---v~~v~~~~~~~~ 95 (105)
.++++| |||++||++.|++|+.+||+++ |+.+||+.|...
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~l 130 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 130 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhC
Confidence 245666 9999999999999999999995 455699999764
No 5
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=123.51 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
.||+||||+||||+|++++|++|+.+||+++ +++||||+||++|++|+++|+ |+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~-~~~eisK~lge~Wk~ls~eeK~~y~ 57 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFS-DEADIIKEGMIRFRVLSTEERKVWA 57 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCC-SHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5899999999999999999999999999996 589999999999999999873 65
No 6
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-20 Score=121.79 Aligned_cols=53 Identities=58% Similarity=0.851 Sum_probs=50.6
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+|||++|++++|++++.+||+++++|+||+|.||++|++|+++++
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 64 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEK 64 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 69999999999999999999999999999987799999999999999999873
No 7
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.77 E-value=3.6e-20 Score=120.47 Aligned_cols=53 Identities=53% Similarity=0.831 Sum_probs=50.4
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
|||+||||+|||++|++++|.+++.+||+++++|+||+|.||++|++|+++++
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 56 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 56 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 79999999999999999999999999999987789999999999999999863
No 8
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.77 E-value=4.4e-19 Score=111.76 Aligned_cols=50 Identities=58% Similarity=0.973 Sum_probs=47.9
Q ss_pred CCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 4 KLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 4 kPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||||+|||++|++++|++++.+||+++++|+||+|.||++|++|+++++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTS
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHH
Confidence 69999999999999999999999999987789999999999999999884
No 9
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.73 E-value=3.2e-18 Score=109.43 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
|||+||||+|||++|++++|.+++.+||+++ ++||++.||++|+.|+++++
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 53 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDK 53 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHSCGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 7999999999999999999999999999985 79999999999999999874
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.71 E-value=3.8e-18 Score=113.13 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=47.8
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVN 52 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~ee 52 (105)
|||+||||+||||+|++++|.+++.+||+++ ++||+|.||++|+.|++++
T Consensus 17 dp~~pKrP~say~lF~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~ee 66 (90)
T 1wgf_A 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELS--ESELTRLLARMWNDLSEKK 66 (90)
T ss_dssp CCCCCCCCCCHHHHHHHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHH
Confidence 6999999999999999999999999999984 7999999999999999986
No 11
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.71 E-value=9.2e-18 Score=106.96 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCCCC
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNPFV 55 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eeky~ 55 (105)
||+||||+||||+|++++|.+++++||+++ ++||||.||++|++|.+..+|.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~l~eK~~y~ 52 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIK--VTEIAKKGGEMWKELKDKSKWE 52 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCC--HHHHHHHHHHHHHTCTTHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhhHhhHHHH
Confidence 899999999999999999999999999985 6999999999999992222454
No 12
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.70 E-value=8.8e-18 Score=111.54 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=48.4
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
|||+||||+||||+|++++|.+++.+||+++ ++||+|.+|++|+.|+++++
T Consensus 4 dp~~pKrP~~af~lF~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2crj_A 4 GSSGPKAPVTGYVRFLNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPAEK 54 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHTCCTTHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHH
Confidence 7999999999999999999999999999985 79999999999999999873
No 13
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.70 E-value=2.4e-18 Score=115.26 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=52.0
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FVG 56 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~~ 56 (105)
+||+||||+||||+|++++|.+++.+||+++++++||+|.||++|++|+++++ |..
T Consensus 19 dp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~ 76 (97)
T 2lhj_A 19 DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYER 76 (97)
T ss_dssp CCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 69999999999999999999999999999976689999999999999999984 764
No 14
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.70 E-value=3.8e-18 Score=108.86 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=46.5
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+||||+|++++|.+++.+||+++ ++||||.+|++|++|+++++
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 51 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEK 51 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCS--SSHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCC--HHHHHHHHHhHHHhCCHHHH
Confidence 6999999999999999999999999999985 68999999999999999863
No 15
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=112.28 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=58.8
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CCCCCCCchHHHHhhhccchhhhhc
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FVGRKFAPVFLTFLSRMKDSILFCV 78 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~~e~~APsa~~~f~~~~r~~l~~~ 78 (105)
+||+||||+||||+|++++|.+++.+||+++ ++||+|.+|++|+.|+++++ |.. -+...+..-..+
T Consensus 14 dp~~pKrP~~af~lf~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~----------~A~~~k~~~~~~ 81 (87)
T 2e6o_A 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKD--NRAISVILGDRWKKMKNEERRMYTL----------EAKALAEEQKRL 81 (87)
T ss_dssp CCSSCCCCCCHHHHHHHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHH----------HHHHHHHHHHHH
Confidence 6899999999999999999999999999985 68999999999999999864 543 555555566666
Q ss_pred CCcc
Q psy3267 79 NPVL 82 (105)
Q Consensus 79 nP~l 82 (105)
||+.
T Consensus 82 ~P~Y 85 (87)
T 2e6o_A 82 NPDC 85 (87)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 6653
No 16
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.70 E-value=8.7e-18 Score=114.55 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=47.6
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
|.|+||||+|||++|+|++|+.++.+||+ +++||||+||++|++|+++|+ |+
T Consensus 1 m~~kPKrP~SAy~lf~~~~r~~~k~~~p~---~~~evsK~lGe~Wk~ls~~eK~pye 54 (91)
T 1l8y_A 1 MGKLPESPKRAEEIWQQSVIGDYLARFKN---DRVKALKAMEMTWNNMEKKEKLMWI 54 (91)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHHTTS---THHHHHHHHHHHHHTTGGGHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 78999999999999999999999999999 469999999999999999873 55
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-18 Score=111.63 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=49.2
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
+||+||||+||||+|++++|.+++++||+++ ++||+|.||++|+.|+++++ |.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~ 58 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTS--LEDATLQIEELWKTLSEEEKLKYE 58 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSC--HHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5899999999999999999999999999995 68999999999999999863 55
No 18
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.70 E-value=1e-17 Score=106.73 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=47.4
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCCCC
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNPFV 55 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eeky~ 55 (105)
.|+||||+||||+|++++|.+++.+||+++ ++||+|.+|++|+.|++..+|.
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~K~~y~ 52 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIK--VTEVAKRGGELWRAMKDKSEWE 52 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCC--HHHHHHHHHHHHHHCSCCHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCchHHHH
Confidence 489999999999999999999999999995 6999999999999999844454
No 19
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.69 E-value=1.3e-17 Score=112.80 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
|||+||||+||||+|+++.|.+++++||+++ ++||||.+|++|+.||++++
T Consensus 7 dp~~PKRP~saf~lF~~~~r~~ik~~~P~~~--~~eisk~lg~~Wk~ls~eeK 57 (99)
T 1k99_A 7 HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS--NLDLTKILSKKYKELPEKKK 57 (99)
T ss_dssp SSSSCCCSCCHHHHHHHHHHHHHHTTCTTSC--SHHHHHHHHHHHHHSCSTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 6999999999999999999999999999985 68999999999999999874
No 20
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.68 E-value=1.9e-17 Score=108.32 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+||||+|+++.|.+++.+||+++ ++||||.+|++|+.|+++++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK 51 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEK 51 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSC--HHHHHHHHHHHHTTSCHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHH
Confidence 7999999999999999999999999999985 68999999999999999863
No 21
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.2e-17 Score=110.95 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+||||+|++++|.+++.+||+++ ++||+|.||++|+.|+++++
T Consensus 14 dp~~pKrP~say~lF~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~ls~eeK 64 (102)
T 2co9_A 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDGLGEEQK 64 (102)
T ss_dssp CCCSCCCCCCHHHHTHHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHccCCHHHH
Confidence 6999999999999999999999999999985 79999999999999999863
No 22
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.66 E-value=5.6e-17 Score=104.88 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CCCCCCCchHHHHhhhccchhhhhcC
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FVGRKFAPVFLTFLSRMKDSILFCVN 79 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~~e~~APsa~~~f~~~~r~~l~~~n 79 (105)
+++||||+||||+|+++.|.+++.+||+++ ++||||.+|++|+.|+++++ |.. -+...+..-..+|
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~----------~A~~~k~~~~~~~ 69 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMH--NSNISKILGSRWKAMTNLEKQPYYE----------EQARLSKQHLEKY 69 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCC--HHHHHHHHHHHHTTSCSGGGHHHHH----------HHHHHHHHHHTTC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHhhhhhCCHHHHHHHHH----------HHHHHHHHHHHHC
Confidence 589999999999999999999999999985 68999999999999999774 543 4555555666666
Q ss_pred Ccch
Q psy3267 80 PVLA 83 (105)
Q Consensus 80 P~l~ 83 (105)
|+.+
T Consensus 70 p~Yk 73 (81)
T 1i11_A 70 PDYK 73 (81)
T ss_dssp SCC-
T ss_pred CCCe
Confidence 6653
No 23
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.66 E-value=3.5e-17 Score=106.05 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+|++||||+||||+|++++|.+++.+||+++ ++||+|.+|++|+.|+++++
T Consensus 4 ~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 54 (82)
T 1wz6_A 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLD--NRGATKILADWWAVLDPKEK 54 (82)
T ss_dssp SCCCSCCCCCHHHHHHHHHHHHHHHHCSSSC--TTHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHH
Confidence 5899999999999999999999999999985 68999999999999999863
No 24
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=108.74 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=46.4
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+|++||||+||||+|++++|++++.+||+++ ++||+|.||++|+.|+++++
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK 76 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPHLH--NAELSKTLGKLWRLLNESEK 76 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHH
Confidence 4799999999999999999999999999985 68999999999999999863
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.62 E-value=2.4e-17 Score=109.82 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=48.3
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+|||++|++++|.+++.+||+++ ++||++.||++|++|+++++
T Consensus 17 dp~~pKrP~saf~lF~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK 67 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT--FGQVGKKLGEKWKALTPEEK 67 (93)
T ss_dssp CSSCCCSCCCHHHHHHHHHTSTTTTTCTTSC--HHHHTTTHHHHHHTTHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999999999999999999985 79999999999999999873
No 26
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.62 E-value=2.1e-16 Score=102.23 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+++||||+||||+|++++|.+++.+||+++ ++||+|.+|++|+.|+++++
T Consensus 4 ~~~pKrP~~af~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 53 (83)
T 3f27_D 4 TSRIRRPMNAFMVWAKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEK 53 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHH
Confidence 688999999999999999999999999995 68999999999999999863
No 27
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.62 E-value=1.8e-16 Score=99.30 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=42.7
Q ss_pred CCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 3 nkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
++||||+||||+|++++|++++.+||+++ ++||||.+|++|++|+++++
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 49 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEK 49 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC--HHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHH
Confidence 47999999999999999999999999996 68999999999999999863
No 28
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.61 E-value=2.7e-16 Score=101.28 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=45.9
Q ss_pred CCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 3 nkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
++||||+||||+|++++|.+++.+||+++ ++|||+.||++|+.|+++++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK 49 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMH--NSEISKRLGAEWKLLSETEK 49 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC--HHHHHHHHHHHHTTSCHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 58999999999999999999999999985 78999999999999999863
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.60 E-value=1.3e-16 Score=100.01 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=41.7
Q ss_pred CCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 3 nkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
|+||||+|||++|++++|++++.+|| +||+|.||++|++||++++
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p------~ei~k~lg~~Wk~ls~~eK 45 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP------QEKLKTVKENWKNLSDSEK 45 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH------HHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhhCCHHHH
Confidence 68999999999999999999998876 5999999999999999863
No 30
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.7e-17 Score=109.30 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHH---HHHhhhcccCC--CCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKC---AERWKSSRIVN--PFV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~---ge~WK~ms~ee--ky~ 55 (105)
.+|+||||+||||||++++|++++.+ ++ +|+||+|+| |++|++|+++| +|+
T Consensus 7 ~~~~PKRP~sAf~lF~~e~R~~ik~e--~~--~~~eisK~l~~cGe~Wk~ls~eEK~pYe 62 (93)
T 2cto_A 7 GMPNRKASRNAYYFFVQEKIPELRRR--GL--PVARVADAIPYCSSDWALLREEEKEKYA 62 (93)
T ss_dssp CCCCCCSSCCHHHHHHHTTHHHHHHH--TC--CCSSHHHHTGGGHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHc--CC--CHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47999999999999999999999998 55 468999999 99999999987 355
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.57 E-value=1.2e-15 Score=108.64 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=48.0
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+|||++|+++.|.+++.+||+++ ++||+|.+|++|+.|+++++
T Consensus 85 dp~~pKrp~say~lf~~~~r~~~~~~~p~~~--~~ei~k~lg~~Wk~ls~~eK 135 (159)
T 2gzk_A 85 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDK 135 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSCCC--HHHHHHHHHHHHHHSCHHHH
T ss_pred ccccccccccccchhhHhhHHHHHHhCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999999999999999999985 79999999999999999863
No 32
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.56 E-value=1.5e-15 Score=99.24 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 4 KLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 4 kPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
.||||+||||+|++++|.+++.+||+++ ++|||+.||++|++|+++++
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK 49 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKE--SAAINQILGRRWHALSREEQ 49 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHH
Confidence 6999999999999999999999999984 79999999999999999863
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=108.78 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=48.2
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+||+||||+||||+|++++|.+++.+||+++ ++||+|.||++|+.|+++++
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~--~~ei~k~lg~~Wk~ls~~eK 148 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDK 148 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHSCGGGH
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 6899999999999999999999999999984 79999999999999999874
No 34
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.56 E-value=1.7e-15 Score=96.86 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=45.6
Q ss_pred CCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC
Q psy3267 3 NKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP 53 (105)
Q Consensus 3 nkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek 53 (105)
+.||||+||||+|++++|++++.+||+++ ++||+|.+|++|+.|+++++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK 49 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMH--NAEISKRLGKRWKLLKDSDK 49 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC--HHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 47999999999999999999999999985 68999999999999999863
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.54 E-value=1.4e-15 Score=104.63 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=44.3
Q ss_pred CCCCC-CCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 1 MQNKL-NMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 1 ~PnkP-Kr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
+||+| |||+|||++|++++|++++ ++ +++||+|.||++|++|+++|+ |.
T Consensus 13 d~~~P~KrP~say~lF~~e~r~~~k----~~--~~~eisk~lg~~Wk~Ls~~eK~~Y~ 64 (108)
T 1v64_A 13 FDGRPTKPPPNSYSLYCAELMANMK----DV--PSTERMVLCSQQWKLLSQKEKDAYH 64 (108)
T ss_dssp TTTSCCCCCSSHHHHHHHHHHHHCT----TS--CHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh----CC--CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 68999 9999999999999999988 44 579999999999999999873 65
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-16 Score=105.48 Aligned_cols=51 Identities=14% Similarity=0.314 Sum_probs=45.8
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCC--CCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVN--PFV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~ee--ky~ 55 (105)
|||+||||+||||+|+++.|.++|.+||+++..++||| ++|+.|+++| +|+
T Consensus 19 DpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~ 71 (90)
T 2yuk_A 19 EEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYV 71 (90)
T ss_dssp HHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHH
Confidence 58999999999999999999999999999853378999 9999999987 465
No 37
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.47 E-value=1.3e-14 Score=98.59 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=41.2
Q ss_pred CCCCCCCCchHHHhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 2 QNKLNMQGIAYAFFVQVCREEHKKKHPEEN-VVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 2 PnkPKr~~SAY~fF~q~~Ree~KkknPd~s-v~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
.++||||+||||+|++++|+ ||+.. ++++||+|+||++|+.|+++|+ |.
T Consensus 6 ~~~PKrP~say~lF~~e~~~-----~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~ 57 (101)
T 1v63_A 6 SGPKKPPMNGYQKFSQELLS-----NGELNHLPLKERMVEIGSRWQRISQSQKEHYK 57 (101)
T ss_dssp CSSCCCCSSSHHHHHHHHHH-----HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 47899999999999999975 45532 3689999999999999999873 65
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.26 E-value=5.2e-13 Score=101.98 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCCC--CC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVNP--FV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~eek--y~ 55 (105)
+||+||||+|||++|+++.|.+++..||+ ||+|.+|++|+.|+++++ |.
T Consensus 143 dp~~PKrP~say~lF~~e~r~~~k~~~p~------ei~k~lg~~Wk~ls~~eK~~Y~ 193 (238)
T 3tmm_A 143 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ------EKLKTVKENWKNLSDSEKELYI 193 (238)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSCCSSHH------HHHHHHHHHHHTCCTTTTHHHH
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHhCCHHHHHHHH
Confidence 58999999999999999999999877654 899999999999999875 55
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.25 E-value=2.9e-13 Score=101.95 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=43.8
Q ss_pred CCCCCCCCCchHHHhHHHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccCC--CCC
Q psy3267 1 MQNKLNMQGIAYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIVN--PFV 55 (105)
Q Consensus 1 ~PnkPKr~~SAY~fF~q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~ee--ky~ 55 (105)
+||+||||+|||++|+++.|.+++..||+ ||+|.+|++|+.|++++ +|.
T Consensus 111 dp~~PKrP~say~lF~~e~r~~~k~~~p~------ei~k~lg~~Wk~ls~~eK~~Y~ 161 (214)
T 3tq6_A 111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ------EKLKTVKENWKNLSDSEKELYI 161 (214)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSSCSSHH------HHHHHHHHHHHTCCHHHHHHHH
T ss_pred cccCcccccchhhhhHHHHHHhhccCCHH------HHHHHHHHHHHcCCHHHHHHHH
Confidence 58999999999999999999999877654 89999999999999986 355
No 40
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.67 E-value=1.9e-09 Score=72.84 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=34.7
Q ss_pred CCCCc----hHHHHhhhccchhhhhcCCcch--hhhhhHhhHHHH
Q psy3267 57 RKFAP----VFLTFLSRMKDSILFCVNPVLA--VGSRILEKFDEC 95 (105)
Q Consensus 57 e~~AP----sa~~~f~~~~r~~l~~~nP~l~--v~~v~~~~~~~~ 95 (105)
||||| ||||+||++.|++|+.+||++. +++|. +.|...
T Consensus 19 DpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs-e~Wk~l 62 (90)
T 2yuk_A 19 EEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA-KLWRKA 62 (90)
T ss_dssp HHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH-HHHHHS
T ss_pred CCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH-HHHHcC
Confidence 66666 9999999999999999999999 99999 999754
No 41
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.45 E-value=9.8e-08 Score=62.70 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
.|+|+| +||++||++.|+.|+.+||++ .|+.+||+.|...
T Consensus 16 kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 62 (90)
T 1wgf_A 16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62 (90)
T ss_dssp SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 466776 999999999999999999998 5667799999754
No 42
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=8.2e-08 Score=62.91 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=32.4
Q ss_pred CCCCc----hHHHHhhhccchhhhhcCCcch----hhhhhHhhHHHH
Q psy3267 57 RKFAP----VFLTFLSRMKDSILFCVNPVLA----VGSRILEKFDEC 95 (105)
Q Consensus 57 e~~AP----sa~~~f~~~~r~~l~~~nP~l~----v~~v~~~~~~~~ 95 (105)
++|+| ||||+||++.|++|+.+||+++ |+.++|+.|...
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~l 48 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVL 48 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcC
Confidence 44555 9999999999999999999985 556689999643
No 43
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.44 E-value=8.6e-08 Score=60.44 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=31.3
Q ss_pred CchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 60 APVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 60 APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
|++||++||++.|++|+.+||++ .|+.+||+.|...
T Consensus 7 P~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 3nm9_A 7 PLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM 45 (73)
T ss_dssp CCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 33999999999999999999998 4566789999875
No 44
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.44 E-value=1e-07 Score=63.92 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=34.9
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
.|+++| +||++||++.|+.|+.+||++ .|+.+||+.|...
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~l 52 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKEL 52 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 466666 999999999999999999998 6777899999764
No 45
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.42 E-value=9.6e-08 Score=61.41 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=34.6
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc-----hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL-----AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l-----~v~~v~~~~~~~~ 95 (105)
.|||+| |||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 366777 999999999999999999986 4688999999754
No 46
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.41 E-value=1.1e-07 Score=59.91 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=30.8
Q ss_pred hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+||++|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 9 say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 9 TAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998 5666799999865
No 47
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.38 E-value=1.4e-07 Score=59.49 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.2
Q ss_pred hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 10 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (76)
T 1hry_A 10 NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (76)
T ss_dssp CHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhC
Confidence 999999999999999999998 6788899999754
No 48
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.37 E-value=1.3e-07 Score=59.75 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 57 RKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 57 e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
|+++| +||++|+.+.|+.|+.+||++ .|+.+||+.|...
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 48 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 56666 999999999999999999998 5777899999864
No 49
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.35 E-value=2e-07 Score=61.31 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=33.7
Q ss_pred CCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 57 RKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 57 e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
||++| +||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 4 dp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2crj_A 4 GSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKL 49 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 56666 999999999999999999999 4666799999764
No 50
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.3e-07 Score=60.19 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc-----hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL-----AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l-----~v~~v~~~~~~~~ 95 (105)
.|+++| +||++|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 59 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTM 59 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 466777 999999999999999999986 4688899999754
No 51
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.30 E-value=3.8e-07 Score=59.41 Aligned_cols=39 Identities=5% Similarity=-0.012 Sum_probs=33.7
Q ss_pred CCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 57 RKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 57 e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
++++| +|||+|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 14 dp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 59 (87)
T 2e6o_A 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKM 59 (87)
T ss_dssp CCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 45555 999999999999999999998 6777899999754
No 52
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.29 E-value=3.8e-07 Score=57.74 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=32.4
Q ss_pred CCchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 59 FAPVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 59 ~APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
-|++||++||++.|++|+.+||++ .|+.+||+.|..+
T Consensus 5 RP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (79)
T 3u2b_C 5 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL 44 (79)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhC
Confidence 456999999999999999999998 5677789999764
No 53
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=3.3e-07 Score=61.52 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
.|+|+| +||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~l 59 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGL 59 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccC
Confidence 467777 999999999999999999998 5667799999754
No 54
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=98.27 E-value=4.1e-07 Score=56.24 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=32.4
Q ss_pred CCchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 59 FAPVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 59 ~APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
-|++||++|+++.|+.|+.+||++ .|+.+||+.|..+
T Consensus 5 rP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (71)
T 4a3n_A 5 RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 44 (71)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 355999999999999999999997 6777899999764
No 55
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.3e-07 Score=59.67 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=30.6
Q ss_pred hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+||++|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 13 say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2cs1_A 13 SASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTL 49 (92)
T ss_dssp CHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999998 5666799999754
No 56
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.26 E-value=3.4e-07 Score=60.41 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
.++++| +||++|+++.|..|+.+||++ .|+.+||+.|...
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 62 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKAL 62 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 456666 999999999999999999999 4666799999764
No 57
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.25 E-value=4.4e-07 Score=58.74 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=31.1
Q ss_pred chHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 61 PVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 61 Psa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
++||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 9 ~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 46 (85)
T 1j46_A 9 MNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 3999999999999999999999 5677799999754
No 58
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=98.24 E-value=4.5e-07 Score=56.34 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=31.5
Q ss_pred CchHHHHhhhccchhhhhcCCcch-----hhhhhHhhHHHH
Q psy3267 60 APVFLTFLSRMKDSILFCVNPVLA-----VGSRILEKFDEC 95 (105)
Q Consensus 60 APsa~~~f~~~~r~~l~~~nP~l~-----v~~v~~~~~~~~ 95 (105)
++|||++|+++.|+.|+.+||+++ |+.+||+.|...
T Consensus 5 P~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 45 (71)
T 1ckt_A 5 KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 45 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhC
Confidence 449999999999999999999864 688899999754
No 59
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.22 E-value=6.2e-07 Score=57.44 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=31.0
Q ss_pred hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+||++|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 13 ~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (82)
T 1wz6_A 13 NAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVL 49 (82)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999998 6777899999753
No 60
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.21 E-value=6.4e-07 Score=57.25 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=32.1
Q ss_pred CCchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 59 FAPVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 59 ~APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
-+++||++||++.|+.|+.+||++ .|+.+||+.|...
T Consensus 9 rP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (83)
T 3f27_D 9 RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 48 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 344999999999999999999997 6777799999754
No 61
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.20 E-value=7.2e-07 Score=56.77 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=31.9
Q ss_pred CchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 60 APVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 60 APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+++||++|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 6 P~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (80)
T 1gt0_D 6 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLL 44 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 44999999999999999999998 6777899999753
No 62
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.20 E-value=7.4e-07 Score=56.95 Aligned_cols=36 Identities=3% Similarity=0.057 Sum_probs=32.0
Q ss_pred CchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 60 APVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 60 APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+++|||+|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 8 P~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (81)
T 1i11_A 8 PMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAM 46 (81)
T ss_dssp SCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhC
Confidence 44999999999999999999998 6778899999754
No 63
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.19 E-value=4.9e-07 Score=59.93 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=34.2
Q ss_pred CCCCCc----hHHHHhhhccchhhhhcCCcch-----hhhhhHhhHHHH
Q psy3267 56 GRKFAP----VFLTFLSRMKDSILFCVNPVLA-----VGSRILEKFDEC 95 (105)
Q Consensus 56 ~e~~AP----sa~~~f~~~~r~~l~~~nP~l~-----v~~v~~~~~~~~ 95 (105)
.++++| +||++|+++.|..|+.+||++. |+.+||+.|...
T Consensus 18 kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 66 (97)
T 2lhj_A 18 KDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNAL 66 (97)
T ss_dssp SCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhC
Confidence 456666 9999999999999999999975 777899999753
No 64
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.18 E-value=7.5e-07 Score=57.62 Aligned_cols=37 Identities=3% Similarity=-0.012 Sum_probs=32.7
Q ss_pred CCchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 59 FAPVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 59 ~APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
-+++|||+|+++.|+.|+.+||++ .|+.+||+.|...
T Consensus 5 RP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 44 (86)
T 2lef_A 5 KPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHAL 44 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 345999999999999999999998 6788899999754
No 65
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=98.11 E-value=9e-07 Score=54.74 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=31.1
Q ss_pred chHHHHhhhccchhhhhcCCcchhhhhhHhhHHHH
Q psy3267 61 PVFLTFLSRMKDSILFCVNPVLAVGSRILEKFDEC 95 (105)
Q Consensus 61 Psa~~~f~~~~r~~l~~~nP~l~v~~v~~~~~~~~ 95 (105)
+|||++|+++.|+.++.+||+ .|+.+||+.|...
T Consensus 7 ~say~~F~~~~r~~~k~~~p~-ei~k~lg~~Wk~l 40 (67)
T 3fgh_A 7 RSAYNVYVAERFQEAKGDSPQ-EKLKTVKENWKNL 40 (67)
T ss_dssp CCHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhC
Confidence 399999999999999999995 8999999999754
No 66
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=98.03 E-value=2e-06 Score=58.13 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=30.8
Q ss_pred hHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
+||++|+++.|++|+.+||++ .|+.+||+.|...
T Consensus 35 naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 71 (106)
T 4euw_A 35 NAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 71 (106)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999997 6777899999653
No 67
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=5.3e-05 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=27.6
Q ss_pred hHHHHhhhccchhhhhcC-Ccchhhhhh---HhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVN-PVLAVGSRI---LEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~n-P~l~v~~v~---~~~~~~~ 95 (105)
+|||+|+++.|++|+.++ .+-.|+.++ ||+|...
T Consensus 16 sAf~lF~~e~R~~ik~e~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 16 NAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CHHHHHHHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999883 223667778 9999753
No 68
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=97.43 E-value=7.9e-05 Score=50.32 Aligned_cols=37 Identities=0% Similarity=-0.263 Sum_probs=31.7
Q ss_pred CCchHHHHhhhccchhhhhcCCcc--hhhhhhHhhHHHH
Q psy3267 59 FAPVFLTFLSRMKDSILFCVNPVL--AVGSRILEKFDEC 95 (105)
Q Consensus 59 ~APsa~~~f~~~~r~~l~~~nP~l--~v~~v~~~~~~~~ 95 (105)
.|+||||+|+++.|..+..+||+- .|+..+||+|..+
T Consensus 7 rP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 7 SPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 455999999999999999999984 5666789999765
No 69
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.30 E-value=0.00011 Score=49.98 Aligned_cols=33 Identities=3% Similarity=-0.199 Sum_probs=28.6
Q ss_pred hHHHHhhhccchhhhhcCCcchhhhhhHhhHHHH
Q psy3267 62 VFLTFLSRMKDSILFCVNPVLAVGSRILEKFDEC 95 (105)
Q Consensus 62 sa~~~f~~~~r~~l~~~nP~l~v~~v~~~~~~~~ 95 (105)
+||++||++.|++|+ .-+...|+.+||+.|...
T Consensus 23 say~lF~~e~r~~~k-~~~~~eisk~lg~~Wk~L 55 (108)
T 1v64_A 23 NSYSLYCAELMANMK-DVPSTERMVLCSQQWKLL 55 (108)
T ss_dssp SHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhC
Confidence 999999999999999 445568999999999764
No 70
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.75 E-value=0.00064 Score=45.51 Aligned_cols=34 Identities=12% Similarity=-0.210 Sum_probs=25.6
Q ss_pred CchHHHHhhhccchhhhhcCCcc---hhhhhhHhhHHHH
Q psy3267 60 APVFLTFLSRMKDSILFCVNPVL---AVGSRILEKFDEC 95 (105)
Q Consensus 60 APsa~~~f~~~~r~~l~~~nP~l---~v~~v~~~~~~~~ 95 (105)
|++|||+||++.+. ..++|++ .|+.+||+.|...
T Consensus 12 P~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~l 48 (101)
T 1v63_A 12 PMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRI 48 (101)
T ss_dssp CSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhC
Confidence 33999999999964 3345555 6888899999643
No 71
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=42.07 E-value=7.6 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=11.9
Q ss_pred hhhhhhHhhHHHHhh
Q psy3267 83 AVGSRILEKFDECLD 97 (105)
Q Consensus 83 ~v~~v~~~~~~~~~~ 97 (105)
+=|.||+++|++.++
T Consensus 8 TCGkvi~~~we~y~~ 22 (55)
T 1ef4_A 8 SCGKPVSAYFNEYQR 22 (55)
T ss_dssp CTTSCCHHHHHHHHH
T ss_pred CCCCChhHHHHHHHH
Confidence 457899999998764
No 72
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=33.99 E-value=10 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.1
Q ss_pred hhhhhhHhhHHHHh
Q psy3267 83 AVGSRILEKFDECL 96 (105)
Q Consensus 83 ~v~~v~~~~~~~~~ 96 (105)
+=|.||++||++.+
T Consensus 9 TCGkvi~~k~~~y~ 22 (66)
T 4ayb_N 9 TCGSLIADKWQPFI 22 (66)
T ss_dssp TTCCBCHHHHHHHH
T ss_pred CCcHhHHHHHHHHH
Confidence 45789999999765
No 73
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=32.72 E-value=68 Score=21.23 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.4
Q ss_pred HHHhCCCCchhHHHHHHHHHHHhhhcccCCC-CCC-CCCCch
Q psy3267 23 HKKKHPEENVVFAEFSKKCAERWKSSRIVNP-FVG-RKFAPV 62 (105)
Q Consensus 23 ~KkknPd~sv~faE~sKk~ge~WK~ms~eek-y~~-e~~APs 62 (105)
+++.+|+.. +..++|.+=+.||.+=+++. ..+ .+++||
T Consensus 62 LrKh~~~~~--V~~lAk~Lv~~WK~~v~~~~~~~g~~~~~~~ 101 (103)
T 1wjt_A 62 VRKHCSDKE--VVSLAKVLIKNWKRLLDSPRTTKGERESGPS 101 (103)
T ss_dssp HHHHCCCSH--HHHHHHHHHHHHHHHTCCSCCCCCCSCCCSS
T ss_pred HHccCCcHH--HHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Confidence 344457764 57999999999999988753 333 356664
No 74
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=24.97 E-value=78 Score=19.65 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccC
Q psy3267 17 QVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIV 51 (105)
Q Consensus 17 q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~e 51 (105)
+..|...++-|||....-.+.-+.+.+.|..|++.
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~ 61 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDP 61 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCH
Confidence 45667778889997533357778888889888875
No 75
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=24.44 E-value=88 Score=18.38 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHhhhcccC
Q psy3267 17 QVCREEHKKKHPEENVVFAEFSKKCAERWKSSRIV 51 (105)
Q Consensus 17 q~~Ree~KkknPd~sv~faE~sKk~ge~WK~ms~e 51 (105)
+..|...++-|||...+-.+.-+.+.+.|..|++.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 44566667778986543346667788888888774
No 76
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=24.27 E-value=15 Score=23.55 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=12.2
Q ss_pred hhhhhhHhhHHHHhhh
Q psy3267 83 AVGSRILEKFDECLDY 98 (105)
Q Consensus 83 ~v~~v~~~~~~~~~~~ 98 (105)
+=|.||+++|++.+..
T Consensus 9 TCGkvi~~~we~y~~~ 24 (70)
T 1twf_J 9 SCGKVVGDKWESYLNL 24 (70)
T ss_dssp TTCCBCTTCHHHHHHH
T ss_pred CCCCChHHHHHHHHHH
Confidence 4578899999987653
Done!