RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3267
(105 letters)
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 44.1 bits (104), Expect = 4e-08
Identities = 28/37 (75%), Positives = 34/37 (91%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+YAFFVQ CREEHKKKHP+ +V F+EFSKKC+ERWK+
Sbjct: 8 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT 44
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 35.1 bits (81), Expect = 1e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AY ++ RE K+++P E +K+ E W++
Sbjct: 10 AYMLWLNSARESIKRENPGIK--VTEVAKRGGELWRA 44
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 34.4 bits (79), Expect = 3e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
A+ F R + K +HP + + +KK E W +
Sbjct: 9 AFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNN 43
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 34.1 bits (78), Expect = 7e-04
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
Y F Q + H E + RW+
Sbjct: 15 GYQKFSQELLSNGELNHLP----LKERMVEIGSRWQR 47
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 33.4 bits (76), Expect = 8e-04
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
A F + R + +++ PE + +E ++ A W
Sbjct: 27 AMFIFSEEKRRQLQEERPELS--ESELTRLLARMWND 61
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 31.4 bits (71), Expect = 0.006
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERW 45
Y F R ++ K HPE + + +K ++++
Sbjct: 17 PYFRFFMEKRAKYAKLHPEMS--NLDLTKILSKKY 49
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 30.6 bits (69), Expect = 0.011
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
AY FF R+ + ++P ++ F + KK E+WK+
Sbjct: 27 AYMFFANENRDIVRSENP--DITFGQVGKKLGEKWKA 61
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 29.9 bits (67), Expect = 0.023
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
+Y+ + K E C+++WK
Sbjct: 24 SYSLYCAELMANMKDVP------STERMVLCSQQWKL 54
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.5 bits (61), Expect = 0.11
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKSSR 49
A+ + + R + +++P+ + +E SK+ WK
Sbjct: 9 AFMVWSRGQRRKMAQENPKMH--NSEISKRLGAEWKLLS 45
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.7 bits (59), Expect = 0.23
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
A+ + + R + ++P +E SK+ +WK
Sbjct: 11 AFIVWSRDQRRKMALENPRMR--NSEISKQLGYQWKM 45
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 26.3 bits (58), Expect = 0.28
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 AYAFFVQVCREEHKKKHPEENVVFAEFSKKCAERWKS 47
A+ + + R + + P+ + + SK RWK+
Sbjct: 9 AFMVWAKDERRKILQAFPDMH--NSNISKILGSRWKA 43
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 202
Score = 25.2 bits (55), Expect = 1.8
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 20 REEHKKKHPEENVVFAEFSKKCAERWKSSR--IVNPFVGRK 58
R+ K+ NV + AE S +++ G+
Sbjct: 1 RQRFVDKNGRCNVQHGNLGSERAETLMFSEHAVISMRDGKL 41
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 24.3 bits (52), Expect = 4.3
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 39 KKCAERWKSSRIVNPFVGRKFAPVFLTFLSRMKDSILFCVNPVLAVGSRILEKFDECLDY 98
++ E S K L L + + + + +F+ +
Sbjct: 311 ERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKG----DLLEDEVKLTIMEFESLMHT 366
Query: 99 FG 100
+G
Sbjct: 367 YG 368
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.431
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,673
Number of extensions: 16573
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 17
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)