Query psy3268
Match_columns 194
No_of_seqs 137 out of 1157
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:42:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5E-47 1.1E-51 366.6 10.3 155 3-171 428-595 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 1.6E-46 3.4E-51 357.7 11.7 156 3-172 462-628 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 2E-46 4.3E-51 351.9 12.0 157 3-173 367-533 (674)
4 cd01387 MYSc_type_XV Myosin mo 100.0 5E-46 1.1E-50 349.5 12.0 155 3-171 361-525 (677)
5 cd01385 MYSc_type_IX Myosin mo 100.0 5.7E-46 1.2E-50 349.8 12.0 155 3-171 376-541 (692)
6 cd01378 MYSc_type_I Myosin mot 100.0 6.6E-46 1.4E-50 348.7 11.4 155 3-171 366-532 (674)
7 cd01381 MYSc_type_VII Myosin m 100.0 1.6E-45 3.5E-50 345.7 12.4 156 3-172 362-528 (671)
8 cd01380 MYSc_type_V Myosin mot 100.0 1.9E-45 4.2E-50 346.3 11.8 155 3-172 368-534 (691)
9 cd01377 MYSc_type_II Myosin mo 100.0 3.5E-45 7.6E-50 344.7 12.8 157 3-173 374-543 (693)
10 cd01383 MYSc_type_VIII Myosin 100.0 5.1E-45 1.1E-49 342.5 12.3 151 3-170 365-525 (677)
11 cd01382 MYSc_type_VI Myosin mo 100.0 4.8E-45 1E-49 344.7 11.8 157 2-172 396-572 (717)
12 smart00242 MYSc Myosin. Large 100.0 2E-44 4.4E-49 339.2 11.6 157 3-173 369-536 (677)
13 cd01379 MYSc_type_III Myosin m 100.0 1.6E-43 3.5E-48 331.3 11.7 156 3-174 373-537 (653)
14 cd00124 MYSc Myosin motor doma 100.0 3.8E-43 8.3E-48 330.9 12.1 156 3-172 362-528 (679)
15 PF00063 Myosin_head: Myosin h 100.0 2.2E-42 4.8E-47 326.3 9.6 158 2-173 363-536 (689)
16 cd01386 MYSc_type_XVIII Myosin 100.0 2.6E-41 5.7E-46 320.6 11.7 155 3-171 373-567 (767)
17 KOG0161|consensus 100.0 4.8E-41 1E-45 336.2 8.0 155 2-171 447-615 (1930)
18 KOG0164|consensus 100.0 5.7E-40 1.2E-44 300.5 7.9 152 8-173 385-549 (1001)
19 KOG0162|consensus 100.0 1.3E-38 2.9E-43 291.9 7.9 150 8-172 393-550 (1106)
20 KOG0163|consensus 100.0 2E-37 4.3E-42 285.0 9.4 173 3-189 451-643 (1259)
21 KOG0160|consensus 100.0 1.5E-35 3.3E-40 280.0 9.0 154 3-171 368-531 (862)
22 KOG4229|consensus 100.0 3E-30 6.5E-35 249.1 6.2 155 3-171 427-592 (1062)
23 PF09322 DUF1979: Domain of un 24.0 61 0.0013 21.0 1.7 15 110-125 4-18 (58)
24 PF04022 Staphylcoagulse: Stap 21.8 97 0.0021 16.9 2.0 23 102-125 3-25 (27)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=5e-47 Score=366.64 Aligned_cols=155 Identities=39% Similarity=0.611 Sum_probs=147.6
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhC-CcCcccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLC 76 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~-~p~Gll~ 76 (194)
.|||| ||+|+ .|||||||||||||||||+|++|||+.||++|.+|||.|++|+|.||++||||||+ .|.|||+
T Consensus 428 ~fIGVLDIyGFEiFE-kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIls 506 (1463)
T COG5022 428 NFIGVLDIYGFEIFE-KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILS 506 (1463)
T ss_pred cceeEEeecchhhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHh
Confidence 68999 99999 99999999999999999999999999999999999999999999999999999997 3789999
Q ss_pred cchhhhhccCCCcchhHHHHHhc-------CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccch
Q psy3268 77 VLDDQAKIKISTEINETKLVKSA-------IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYV 149 (194)
Q Consensus 77 lLDee~~~p~~t~~d~~fl~~l~-------~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~ 149 (194)
+|||||.+|.++ |++|..||. ++.|.+++.....|+|. ||||+|.| ++.||++||+|++++++
T Consensus 507 lLDEE~~~p~at--d~s~~sKL~~~l~~~~~~~f~~~rf~~~~Fvvk-HYAgDVeY-------~veg~ldKNkD~l~~~l 576 (1463)
T COG5022 507 LLDEECVMPHAT--DESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVK-HYAGDVEY-------DVEGFLDKNKDPLNDDL 576 (1463)
T ss_pred hhcHHhcCCCCC--chHHHHHHHHHhccccCccccccccCCCceEEE-eeccccee-------eccchhhhCcchhhHHH
Confidence 999999999999 999999886 57788888888999999 99999999 99999999999999999
Q ss_pred hhhhhhhccCcHHHHHhhccch
Q psy3268 150 PVSYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 150 ~~~~~~~~~S~~~~i~~lf~~~ 171 (194)
+.++. +|+|+||+.||.+.
T Consensus 577 l~Ll~---~StNe~vs~Lf~~~ 595 (1463)
T COG5022 577 LELLK---ASTNEFVSTLFDDE 595 (1463)
T ss_pred HHHHh---hccchHHHHhhhhh
Confidence 99996 99999999999843
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.6e-46 Score=357.73 Aligned_cols=156 Identities=25% Similarity=0.335 Sum_probs=147.6
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|||||++||.|||++
T Consensus 462 ~~IGiLDI~GFE~f~-~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~l 540 (821)
T PTZ00014 462 VFIGMLDIFGFEVFK-NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540 (821)
T ss_pred ceEEEEecccccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHH
Confidence 58998 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCCC-CCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKSTR-SVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~-~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
|||||++|+++ |++|+++|. |++|.+|+. .+..|+|+ ||||+|.| ++.||++||+|.++.+++.
T Consensus 541 LDEec~~p~~t--D~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKNkD~l~~~~~~ 610 (821)
T PTZ00014 541 LEDQCLAPGGT--DEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIK-HTIGDIQY-------CASGFLFKNKDVLRPELVE 610 (821)
T ss_pred HHHHhCCCCCC--HHHHHHHHHHHhcCCCCccCCCCCCCCceEEE-Eeceeeee-------ccCcHHHhccccchHHHHH
Confidence 99999999999 999999997 677777654 56899999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccchh
Q psy3268 152 SYTEAITTTTEFISEFYYDEE 172 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~~ 172 (194)
+++ .|++++|+.||.+..
T Consensus 611 ll~---~S~n~~i~~lf~~~~ 628 (821)
T PTZ00014 611 VVK---ASPNPLVRDLFEGVE 628 (821)
T ss_pred HHH---hCccHHHHHHhcccc
Confidence 997 899999999997643
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2e-46 Score=351.86 Aligned_cols=157 Identities=34% Similarity=0.438 Sum_probs=149.9
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|||||+++|.|||++
T Consensus 367 ~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~l 445 (674)
T cd01384 367 SLIGVLDIYGFESFK-TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIAL 445 (674)
T ss_pred eEEEEEecccccccC-cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHH
Confidence 57888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVS 152 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~ 152 (194)
|||||++|+++ |++|++||. +++|.+|+..+..|+|+ ||||+|+| ++.||++||+|.++.+++.+
T Consensus 446 Ldee~~~p~~t--d~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~v~gfleKN~D~l~~~~~~l 515 (674)
T cd01384 446 LDEACMFPKST--HETFAQKLYQTFKDHKRFEKPKLSRTAFTID-HYAGDVTY-------QTDQFLDKNKDYVVAEHQAL 515 (674)
T ss_pred HHHHHcCCCCC--HHHHHHHHHHHhcCCCCCCCCCCCCCeeEEE-Eecceeee-------cCCCHHHhcCCcccHHHHHH
Confidence 99999999999 999999997 67888888888999999 99999999 99999999999999999999
Q ss_pred hhhhccCcHHHHHhhccchhh
Q psy3268 153 YTEAITTTTEFISEFYYDEEA 173 (194)
Q Consensus 153 ~~~~~~S~~~~i~~lf~~~~~ 173 (194)
++ .|++++|+.||.+...
T Consensus 516 l~---~S~n~~i~~lf~~~~~ 533 (674)
T cd01384 516 LN---ASNCSFVAGLFPPLPE 533 (674)
T ss_pred HH---hCchHHHHHHhccccc
Confidence 97 9999999999986543
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=5e-46 Score=349.49 Aligned_cols=155 Identities=36% Similarity=0.531 Sum_probs=147.6
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.+||| ||+|+ .||||||||||||||||++|++++|..||++|.+|||+|..++|.||++|||||+++|.|||++
T Consensus 361 ~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~l 439 (677)
T cd01387 361 LSIAILDIYGFEDLS-FNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRI 439 (677)
T ss_pred ceEEEEecCccccCC-CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHH
Confidence 47888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVS 152 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~ 152 (194)
|||||++|+++ |++|++|+. ++.+.+|+..+..|+|+ ||||+|+| ++.||++||+|.++++++.+
T Consensus 440 Ldee~~~p~~t--d~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKN~D~l~~~~~~l 509 (677)
T cd01387 440 LDDQCCFPQAT--DHTFLQKCHYHHGANPLYSKPKMPLPEFTIK-HYAGKVTY-------QVHKFLDKNHDQVRQDVLDL 509 (677)
T ss_pred HHHHhcCCCCc--hHHHHHHHHHhccCCccccCCCCCCCeeEEE-EeCceeee-------cCCChHHhccchhhHHHHHH
Confidence 99999999999 999999997 56777887777899999 99999999 99999999999999999999
Q ss_pred hhhhccCcHHHHHhhccch
Q psy3268 153 YTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 153 ~~~~~~S~~~~i~~lf~~~ 171 (194)
++ .|++++|++||...
T Consensus 510 l~---~S~~~~i~~lf~~~ 525 (677)
T cd01387 510 FV---SSRTRVVAHLFSSH 525 (677)
T ss_pred HH---hCCcHHHHHHHhhh
Confidence 97 89999999999754
No 5
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.7e-46 Score=349.81 Aligned_cols=155 Identities=36% Similarity=0.570 Sum_probs=147.8
Q ss_pred cccce-----eecCCCC-CchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCcccc
Q psy3268 3 QWSNI-----DKRFVNW-RSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 76 (194)
Q Consensus 3 ~~~~~-----fE~f~~~-NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~ 76 (194)
.+||| ||+|+ . |+||||||||||||||++|++++|..|+++|.+|||.|..|+|.||++|||||++||.|||+
T Consensus 376 ~~IgiLDI~GFE~f~-~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~ 454 (692)
T cd01385 376 LSIGVLDIFGFEDFG-RCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLY 454 (692)
T ss_pred eEEEEEecCccccCC-CCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHH
Confidence 47888 99999 8 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 77 VLDDQAKIKISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 77 lLDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
+|||||++|+++ |++|++|+. ++++.+|+.....|+|+ ||||+|+| ++.||++||+|.++++++.
T Consensus 455 lLdee~~~p~~t--d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKN~D~l~~~~~~ 524 (692)
T cd01385 455 LLDEESNFPHAT--SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQ-HYAGKVKY-------QIKDFREKNMDLMRQDIVA 524 (692)
T ss_pred HhHHHhcCCCCC--HHHHHHHHHHHhCCCCCccCCCCCCCeEEEE-Eecceeee-------cCCCHHHhccccccHHHHH
Confidence 999999999999 999999998 67788887788899999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccch
Q psy3268 152 SYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~ 171 (194)
+++ .|++++|+.||...
T Consensus 525 ll~---~S~n~~i~~lf~~~ 541 (692)
T cd01385 525 LLK---GSDSSYVRELIGMD 541 (692)
T ss_pred HHH---hCccHHHHHHhccC
Confidence 997 89999999999754
No 6
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6.6e-46 Score=348.73 Aligned_cols=155 Identities=30% Similarity=0.496 Sum_probs=146.8
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhC-CcCcccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLC 76 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~-~p~Gll~ 76 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||+|..|+|.||++|+|||++ +|.|||+
T Consensus 366 ~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~ 444 (674)
T cd01378 366 KVIGVLDIYGFEIFQ-KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFS 444 (674)
T ss_pred ceEEEEecccccccc-cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHH
Confidence 47888 99999 99999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cchhhhhcc-CCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchh
Q psy3268 77 VLDDQAKIK-ISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVP 150 (194)
Q Consensus 77 lLDee~~~p-~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~ 150 (194)
+|||||++| +++ |++|++|+. ++.+.+|+..+..|+|+ ||||+|+| ++.||++||+|.++++++
T Consensus 445 lLdee~~~p~~~t--D~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKNrD~l~~~~~ 514 (674)
T cd01378 445 ILDDVCATPHEGT--DQTFLEKLNKKFSSHPHSDHFSSGSDEFRIK-HYAGDVTY-------SVEGFCDKNKDTLFKDLI 514 (674)
T ss_pred HHHHHHcCCCCCC--hHHHHHHHHHHhccCCCCCCCCCCCCcEEEE-Eeceeeee-------cCcCHHHhhcchhhHHHH
Confidence 999999999 899 999999998 55566667778999999 99999999 999999999999999999
Q ss_pred hhhhhhccCcHHHHHhhccch
Q psy3268 151 VSYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 151 ~~~~~~~~S~~~~i~~lf~~~ 171 (194)
.+++ .|++++|+.||.+.
T Consensus 515 ~ll~---~S~n~~i~~lf~~~ 532 (674)
T cd01378 515 ELMQ---SSSNPFLRSLFPEK 532 (674)
T ss_pred HHHH---hCchHHHHHHhccc
Confidence 9997 99999999999753
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.6e-45 Score=345.74 Aligned_cols=156 Identities=33% Similarity=0.508 Sum_probs=147.2
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|||||+++|.|||++
T Consensus 362 ~~IgiLDIfGFE~f~-~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l 440 (671)
T cd01381 362 NSIGVLDIFGFENFD-VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSL 440 (671)
T ss_pred ceEEEEecCCcccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCccee
Confidence 47888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCC-CCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKST-RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~-~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
|||||++|+++ |++|++|+. ++.|.+|+ ..+..|+|+ ||||+|+| ++.||++||+|.++++++.
T Consensus 441 LDee~~~p~~t--d~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKN~D~l~~~~~~ 510 (671)
T cd01381 441 IDEESKFPKGT--DQTMLEKLHSQHGLHSNYLKPKSTQETQFGIN-HFAGVVFY-------DTRGFLEKNRDTFSGDLSQ 510 (671)
T ss_pred chHhhcCCCCC--HHHHHHHHHHHhcCCCCcccCCCCCCCceEEE-EecceEee-------ccCCHHHhccchhhHHHHH
Confidence 99999999999 999999997 67777654 457799999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccchh
Q psy3268 152 SYTEAITTTTEFISEFYYDEE 172 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~~ 172 (194)
+++ .|++++|+.||....
T Consensus 511 ll~---~S~n~~i~~lf~~~~ 528 (671)
T cd01381 511 LVQ---SSKNKFLKQIFQADV 528 (671)
T ss_pred HHH---hChHHHHHHHhcccc
Confidence 997 899999999998654
No 8
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.9e-45 Score=346.34 Aligned_cols=155 Identities=34% Similarity=0.510 Sum_probs=146.3
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|||||++ |.|||++
T Consensus 368 ~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~l 445 (691)
T cd01380 368 SFIGVLDIYGFETFE-KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSL 445 (691)
T ss_pred ceEEEEecCcccccC-CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHH
Confidence 47888 99999 99999999999999999999999999999999999999999999999999999996 5899999
Q ss_pred chhhhhccCCCcchhHHHHHhc-------CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-------IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVP 150 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-------~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~ 150 (194)
|||||++|+++ |++|++||. ++.+.+|+..+..|+|+ ||||+|+| ++.||++||+|.++.+++
T Consensus 446 Ldee~~~p~~t--d~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~v~gfleKNrD~l~~~~~ 515 (691)
T cd01380 446 LDEECRLPKGS--DESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVK-HFADDVEY-------DVDGFLEKNRDTVSDEHL 515 (691)
T ss_pred hHHhhcCCCCC--hHHHHHHHHHHhcccCCCCccCCCCCCCeeEEE-EccCCccc-------ccccHHHhccccccHHHH
Confidence 99999999999 999999986 55677787778899999 99999999 999999999999999999
Q ss_pred hhhhhhccCcHHHHHhhccchh
Q psy3268 151 VSYTEAITTTTEFISEFYYDEE 172 (194)
Q Consensus 151 ~~~~~~~~S~~~~i~~lf~~~~ 172 (194)
.+++ .|++++|+.||....
T Consensus 516 ~ll~---~S~~~~i~~lf~~~~ 534 (691)
T cd01380 516 DVLK---ASKNPFLKEVLDAAE 534 (691)
T ss_pred HHHH---hCccHHHHHHhhhhc
Confidence 9997 899999999997654
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.5e-45 Score=344.67 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=146.1
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCccccccc-CCchhHHHHhhCCcCcccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 76 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~Gll~ 76 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|+.|+++|.+|||.|..++| .||++|||||+++|.|||+
T Consensus 374 ~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~ 452 (693)
T cd01377 374 YFIGVLDIAGFEIFD-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILS 452 (693)
T ss_pred ceEEEEecccccccC-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHh
Confidence 57888 99999 99999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred cchhhhhccCCCcchhHHHHHhc-----CCCC--CCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccch
Q psy3268 77 VLDDQAKIKISTEINETKLVKSA-----IPGT--NKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYV 149 (194)
Q Consensus 77 lLDee~~~p~~t~~d~~fl~~l~-----~~~~--~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~ 149 (194)
+|||||++|+++ |++|++++. ++.+ .+++..+..|+|+ ||||+|+| ++.||++||+|.++.++
T Consensus 453 lLdee~~~~~~t--D~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKN~D~l~~~~ 522 (693)
T cd01377 453 LLDEECVFPKAT--DKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLV-HYAGTVDY-------NIDGWLEKNKDPLNDNV 522 (693)
T ss_pred hhhHHhcCCCCC--HHHHHHHHHHHhcCCCcccccCCCCCCCcEEEE-eeceeEee-------ccccHHHhccccccHHH
Confidence 999999999999 999999997 4444 3455667899999 99999999 99999999999999999
Q ss_pred hhhhhhhccCcHHHHHhhccchhh
Q psy3268 150 PVSYTEAITTTTEFISEFYYDEEA 173 (194)
Q Consensus 150 ~~~~~~~~~S~~~~i~~lf~~~~~ 173 (194)
+.+++ .|++++|+.||.....
T Consensus 523 ~~ll~---~S~~~~i~~lf~~~~~ 543 (693)
T cd01377 523 VGLLK---KSSDKLVAELFKDYAE 543 (693)
T ss_pred HHHHH---hCchHHHHHHhhhhcc
Confidence 99997 8999999999986544
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.1e-45 Score=342.51 Aligned_cols=151 Identities=35% Similarity=0.516 Sum_probs=140.5
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.+||| ||+|+ .||||||||||||||||++|++++|..|+++|.+|||+|..|+|.||++|||||+++|.|||++
T Consensus 365 ~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l 443 (677)
T cd01383 365 RSISILDIYGFESFD-KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSL 443 (677)
T ss_pred ceEEEeeccccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 57888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVS 152 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~ 152 (194)
|||||++|+++ |++|++|+. |+.|.+++ +..|+|+ ||||+|+| ++.||++||+|.++.+++.+
T Consensus 444 Ldee~~~p~~t--D~~f~~kl~~~~~~~~~~~~~~--~~~F~I~-HyAG~V~Y-------~v~gfleKNrD~l~~~~~~l 511 (677)
T cd01383 444 LDEESTFPNAT--DLTFANKLKQHLKTNSCFRGER--GGAFTVR-HYAGEVTY-------DTTGFLEKNRDLLHSDSIQL 511 (677)
T ss_pred hHHHHcCCCCC--HHHHHHHHHHHhCCCCCCCCCC--CCceEEE-Eeccceee-------cCCChHHhccccccHHHHHH
Confidence 99999999999 999999997 55565543 5789999 99999999 99999999999999999999
Q ss_pred hhhhccCcHHHHHhhccc
Q psy3268 153 YTEAITTTTEFISEFYYD 170 (194)
Q Consensus 153 ~~~~~~S~~~~i~~lf~~ 170 (194)
++ .|+++++. +|..
T Consensus 512 l~---~S~~~~~~-~f~~ 525 (677)
T cd01383 512 LS---SCKCQLPQ-LFAS 525 (677)
T ss_pred HH---hCchHHHH-HHHh
Confidence 97 88998776 6653
No 11
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=4.8e-45 Score=344.67 Aligned_cols=157 Identities=25% Similarity=0.445 Sum_probs=144.4
Q ss_pred Ccccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCcccc
Q psy3268 2 AQWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 76 (194)
Q Consensus 2 ~~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~ 76 (194)
..|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|||||++||.|||+
T Consensus 396 ~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~ 474 (717)
T cd01382 396 SNFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474 (717)
T ss_pred CcEEEEEeccccccCC-CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHH
Confidence 358888 99999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCCCcchhHHHHHhc-----CCCCCCCCC----------CCCceeEeeeeccceeecCcccccCchhhhhcc
Q psy3268 77 VLDDQAKIKISTEINETKLVKSA-----IPGTNKSTR----------SVPKCWIRGQYVGNHRRLNRLAETGELGVLLKG 141 (194)
Q Consensus 77 lLDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~----------~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn 141 (194)
+|||||++|+++ |++|+++|. ++.+..|+. .+..|+|+ ||||+|+| ++.||++||
T Consensus 475 lLDee~~~p~~t--D~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~v~gfleKN 544 (717)
T cd01382 475 ILDEENRLPQPS--DQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIR-HFAGAVCY-------ETTQFVEKN 544 (717)
T ss_pred HhHHHhcCCCCC--HHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEE-ecceeEee-------cCCChHHhc
Confidence 999999999999 999999997 344444321 24589999 99999999 999999999
Q ss_pred CCccccchhhhhhhhccCcHHHHHhhccchh
Q psy3268 142 LDEFHVYVPVSYTEAITTTTEFISEFYYDEE 172 (194)
Q Consensus 142 ~D~l~~~~~~~~~~~~~S~~~~i~~lf~~~~ 172 (194)
+|.++.+++.+++ .|++++|+.||....
T Consensus 545 kD~l~~~~~~ll~---~S~n~~i~~lf~~~~ 572 (717)
T cd01382 545 NDALHMSLESLIC---ESKDKFLRSLFESST 572 (717)
T ss_pred CccccHHHHHHHH---hCchHHHHHHhcccc
Confidence 9999999999997 899999999997643
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=2e-44 Score=339.18 Aligned_cols=157 Identities=37% Similarity=0.617 Sum_probs=148.3
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|||||+++|.||+++
T Consensus 369 ~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~l 447 (677)
T smart00242 369 YFIGVLDIYGFEIFE-VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSL 447 (677)
T ss_pred eEEEEEecccccccc-cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHH
Confidence 57888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCC-CCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKS-TRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~-~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
|||||++|+++ |++|++++. ++.+.+| +..+..|+|+ ||||+|.| ++.||++||+|.++.+++.
T Consensus 448 Ldee~~~~~~t--d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~-H~AG~V~Y-------~~~gfleKN~D~l~~~~~~ 517 (677)
T smart00242 448 LDEECRFPKAT--DQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIK-HYAGDVTY-------DVTGFLEKNKDTLFKDLIE 517 (677)
T ss_pred HHHHhcCCCCC--HHHHHHHHHHHhcCCCCccCCCCCCCCeEEEE-ecceeEee-------cCccHHHHccchhhHHHHH
Confidence 99999999999 999999998 6777777 4567899999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccchhh
Q psy3268 152 SYTEAITTTTEFISEFYYDEEA 173 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~~~ 173 (194)
+++ .|++++|+.||.....
T Consensus 518 ll~---~S~n~~i~~lf~~~~~ 536 (677)
T smart00242 518 LLQ---SSKNPLIASLFPSGES 536 (677)
T ss_pred HHH---hCCcHHHHHHhccccc
Confidence 997 8999999999986543
No 13
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.6e-43 Score=331.31 Aligned_cols=156 Identities=32% Similarity=0.462 Sum_probs=143.5
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .||||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|||||++||.|||++
T Consensus 373 ~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~l 451 (653)
T cd01379 373 LNVGILDIFGFENFK-KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLAL 451 (653)
T ss_pred ceEEEEeccccccCC-CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHH
Confidence 47888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVSY 153 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~~ 153 (194)
|||||++|+++ |++|++|+. ++++.+|+..+..|+|+ ||||+|+| ++.||++||+|.++.+++.++
T Consensus 452 Ldee~~~~~~t--d~~~~~kl~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~~~gfleKNkD~l~~~~~~ll 521 (653)
T cd01379 452 LDEESRFPQAT--DQTLVEKFEDNLKSKFFWRPKRVELSFGIH-HYAGKVLY-------NASGFLEKNRDFLPADIVLLL 521 (653)
T ss_pred HHHHhcCCCCC--HHHHHHHHHHhcCCCCccCCCCCCCceEEE-EeceeEee-------cCCCHHHhccccccHHHHHHH
Confidence 99999999999 999999997 56677787778899999 99999999 999999999999999999999
Q ss_pred hhhccCcHHHHHhhccchhhh
Q psy3268 154 TEAITTTTEFISEFYYDEEAH 174 (194)
Q Consensus 154 ~~~~~S~~~~i~~lf~~~~~~ 174 (194)
+ .| ..|..-|......
T Consensus 522 ~---~S--~tv~~~fr~~l~~ 537 (653)
T cd01379 522 R---SS--QTVASYFRYSLMD 537 (653)
T ss_pred H---hC--cHHHHHHHHHHHH
Confidence 6 55 4567777654433
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3.8e-43 Score=330.86 Aligned_cols=156 Identities=38% Similarity=0.584 Sum_probs=145.7
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.+||| ||+|+ .|+||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|||||+++|.||+++
T Consensus 362 ~~IgiLDi~GFE~f~-~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~l 440 (679)
T cd00124 362 LFIGILDIFGFEIFE-KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSL 440 (679)
T ss_pred ceeeEEeccccccCC-CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHH
Confidence 57888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCC-CCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGT-NKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~-~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
|||||++|+++ |++|++++. ++.+ .+++..+..|+|+ ||||+|+| ++.||++||+|.++.+++.
T Consensus 441 Ldee~~~~~~~--d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~V~Y-------~v~gfleKN~D~l~~~~~~ 510 (679)
T cd00124 441 LDEECLFPKGT--DETFLEKLNNKLKSNNAFYPAKKNAPTEFTIK-HYAGDVTY-------DARGFLEKNKDVLSPELVS 510 (679)
T ss_pred HHHHhCCCCCC--HHHHHHHHHHHhcCCcccccCCCCCCCceEEE-eeceeEEe-------cCCCHHHhcCCcccHHHHH
Confidence 99999999999 999999998 3443 3445667899999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccchh
Q psy3268 152 SYTEAITTTTEFISEFYYDEE 172 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~~ 172 (194)
+++ .|++++|+.||....
T Consensus 511 ll~---~S~~~~i~~lf~~~~ 528 (679)
T cd00124 511 LLK---SSSNPFIRELFESEL 528 (679)
T ss_pred HHH---hCCcHHHHHHhcccc
Confidence 997 999999999998643
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.2e-42 Score=326.26 Aligned_cols=158 Identities=39% Similarity=0.617 Sum_probs=139.2
Q ss_pred Ccccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCccccccc-CCchhHHHHhhCCcCccc
Q psy3268 2 AQWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 75 (194)
Q Consensus 2 ~~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~Gll 75 (194)
..+||| ||+|. .|+||||||||||||||++|++++|..++++|.+|||.|..++| .||.+|||||+++|.|||
T Consensus 363 ~~~IgILDi~GFE~~~-~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil 441 (689)
T PF00063_consen 363 SSSIGILDIFGFENFS-VNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGIL 441 (689)
T ss_dssp SEEEEEEEEE-B---S-SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHH
T ss_pred cccCcccCcccccccc-ccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHH
Confidence 357888 99999 99999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccchhhhhccCCCcchhHHHHHhc------CCCCCCCC----CCCCceeEeeeeccceeecCcccccCchhhhhccCCcc
Q psy3268 76 CVLDDQAKIKISTEINETKLVKSA------IPGTNKST----RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEF 145 (194)
Q Consensus 76 ~lLDee~~~p~~t~~d~~fl~~l~------~~~~~~~~----~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l 145 (194)
++|||||+.|+++ |++|++++. ++.+.+|+ ..+..|+|+ ||||+|+| ++.||++||+|.+
T Consensus 442 ~lLdee~~~~~~s--d~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~-HyaG~V~Y-------~v~gfleKNrD~l 511 (689)
T PF00063_consen 442 SLLDEECLLPRGS--DESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIK-HYAGDVTY-------DVEGFLEKNRDPL 511 (689)
T ss_dssp HHHHHHCTSTTS---HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEE-ETTEEEEE-------E-TTHHHHHHE-S
T ss_pred HHhhhhhhcccch--hhHHHHHHHhhcccCCCcccccccccccCCCceEee-cccCccee-------ccccccccccchH
Confidence 9999999999999 999999986 45665653 578999999 99999999 9999999999999
Q ss_pred ccchhhhhhhhccCcHHHHHhhccchhh
Q psy3268 146 HVYVPVSYTEAITTTTEFISEFYYDEEA 173 (194)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~i~~lf~~~~~ 173 (194)
+++++.+++ .|+++||+.||.....
T Consensus 512 ~~~~~~ll~---~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 512 SQDFVSLLR---SSTNSFVSSLFSSEAT 536 (689)
T ss_dssp -HHHHHHHH---TSSSHHHHHHTHSHHH
T ss_pred HHHHHHHHH---hCcCcccccccccccc
Confidence 999999997 8999999999997765
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.6e-41 Score=320.60 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=136.1
Q ss_pred cccce-----eecCCCC------CchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCccccccc-CCchhHHHHhhCC
Q psy3268 3 QWSNI-----DKRFVNW------RSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK 70 (194)
Q Consensus 3 ~~~~~-----fE~f~~~------NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~ 70 (194)
.+||| ||+|+ . |+||||||||||||||++|++++|+.|+++|.+|||+|+.+.+ .||.+||+||+++
T Consensus 373 ~~IgiLDIfGFE~f~-~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~ 451 (767)
T cd01386 373 ASIMLVDTPGFQNPA-SQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQA 451 (767)
T ss_pred cEEEEEecccccccc-cccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcc
Confidence 47887 99997 5 8999999999999999999999999999999999999986555 7999999999986
Q ss_pred c--------------CcccccchhhhhccCCCcchhHHHHHhc-----CCCCCCC------CCCCCceeEeeeecc--ce
Q psy3268 71 P--------------NGLLCVLDDQAKIKISTEINETKLVKSA-----IPGTNKS------TRSVPKCWIRGQYVG--NH 123 (194)
Q Consensus 71 p--------------~Gll~lLDee~~~p~~t~~d~~fl~~l~-----~~~~~~~------~~~~~~F~I~~HyaG--~V 123 (194)
| .|||++|||||++|+++ |++|++||. ++.+.++ ...+..|+|+ |||| +|
T Consensus 452 p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~t--D~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~-HyAG~~~V 528 (767)
T cd01386 452 PQQVVVPAGLRAEDARGLLWLLDEEALVPGSS--DDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLF-HLLGTNPV 528 (767)
T ss_pred cccccccchhhccCCCchhhhhhHhhcCCCCc--HHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEE-EcCCCCce
Confidence 5 59999999999999999 999999997 4444431 1235689999 9999 59
Q ss_pred eecCcccccCchhhhhccCCcc-ccchhhhhhhhccCcHHHHHhhccch
Q psy3268 124 RRLNRLAETGELGVLLKGLDEF-HVYVPVSYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 124 ~Y~~~~~~~~~~~~l~kn~D~l-~~~~~~~~~~~~~S~~~~i~~lf~~~ 171 (194)
+| ++.||++||+|.+ ..+++.+++ .|++++|..||.+.
T Consensus 529 ~Y-------~~~gfleKNkD~~~~~~~~~ll~---~S~~~~i~~lF~~~ 567 (767)
T cd01386 529 LY-------DVTGWLRRAKPNPAALNAPQLLQ---DSKREEINSLFQGR 567 (767)
T ss_pred Ee-------cCCCHHHhcCCCCChHHHHHHHH---hCCcHHHHHHHhcc
Confidence 99 9999999999975 578888886 89999999999754
No 17
>KOG0161|consensus
Probab=100.00 E-value=4.8e-41 Score=336.17 Aligned_cols=155 Identities=35% Similarity=0.565 Sum_probs=147.1
Q ss_pred Ccccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCccccccc-CCchhHHHHhhCCcCccc
Q psy3268 2 AQWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 75 (194)
Q Consensus 2 ~~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~-~dn~~~ldLi~~~p~Gll 75 (194)
+.|||| ||+|+ .||||||||||+|||||++|++++|..++++|.+|||.|.+|+| .|-++|||||+ +|.||+
T Consensus 447 ~~fIgvLDiaGFEIfe-~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~ 524 (1930)
T KOG0161|consen 447 DYFIGVLDIAGFEIFE-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGIL 524 (1930)
T ss_pred CCcceeeeeccccccC-cCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHH
Confidence 468999 99999 99999999999999999999999999999999999999999999 89999999999 477999
Q ss_pred ccchhhhhccCCCcchhHHHHHhc------CCCCCCCC--CCCCceeEeeeeccceeecCcccccCchhhhhccCCcccc
Q psy3268 76 CVLDDQAKIKISTEINETKLVKSA------IPGTNKST--RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHV 147 (194)
Q Consensus 76 ~lLDee~~~p~~t~~d~~fl~~l~------~~~~~~~~--~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~ 147 (194)
++|||||.+|++| |.+|+.+|. ++.|.+|+ ..+..|.|. ||||+|.| ++.||++||+|+++.
T Consensus 525 slLdEEc~~PkAt--d~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~-HyaG~V~Y-------~~~~WL~Knkdpln~ 594 (1930)
T KOG0161|consen 525 SLLDEECVVPKAT--DKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALV-HYAGTVDY-------NVDGWLEKNKDPLND 594 (1930)
T ss_pred HHHHHHHhcCCCc--cchHHHHHHHHhhccCccccCcccccchhhhhee-eecceecc-------CccchhhcCCCCchH
Confidence 9999999999999 999999997 77888886 667899999 99999999 999999999999999
Q ss_pred chhhhhhhhccCcHHHHHhhccch
Q psy3268 148 YVPVSYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 148 ~~~~~~~~~~~S~~~~i~~lf~~~ 171 (194)
.++.++. .|++++|+.||++.
T Consensus 595 ~v~~ll~---~s~~~~v~~l~~~~ 615 (1930)
T KOG0161|consen 595 NVVSLLK---QSTNKLVSSLFQDY 615 (1930)
T ss_pred HHHHHHH---hcccHHHHHHhhhh
Confidence 9999997 78899999999983
No 18
>KOG0164|consensus
Probab=100.00 E-value=5.7e-40 Score=300.51 Aligned_cols=152 Identities=30% Similarity=0.450 Sum_probs=140.4
Q ss_pred eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCcccccchhhhhccC-
Q psy3268 8 DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKIKI- 86 (194)
Q Consensus 8 fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~lLDee~~~p~- 86 (194)
||+|+ .|||||||||||||||||.|++.+++.||+||.+|||.|..|+|.+|..++||++.+.+||++||||||+.|+
T Consensus 385 feif~-~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 385 FEIFQ-DNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred EEeec-CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcchhHHHHHhc-----CCCCCCC-------CCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhhhh
Q psy3268 87 STEINETKLVKSA-----IPGTNKS-------TRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVSYT 154 (194)
Q Consensus 87 ~t~~d~~fl~~l~-----~~~~~~~-------~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~~~ 154 (194)
.| |.+||++|. |++|... .....+|.|. ||||+|+| ++.||+.||+|.|..|+..+|-
T Consensus 464 vt--D~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~-HYAG~V~Y-------sV~gFidKN~D~Lf~dlk~~m~ 533 (1001)
T KOG0164|consen 464 VT--DETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRIT-HYAGDVTY-------SVEGFIDKNNDLLFQDLKRLMY 533 (1001)
T ss_pred cc--hHHHHHHHHHHhhhCCcchhhhccccccccCccceeEE-EeccceEE-------EEEeeeccCccHHHHHHHHHHH
Confidence 67 999999997 6666532 2345799999 99999999 9999999999999999999996
Q ss_pred hhccCcHHHHHhhccchhh
Q psy3268 155 EAITTTTEFISEFYYDEEA 173 (194)
Q Consensus 155 ~~~~S~~~~i~~lf~~~~~ 173 (194)
.|+++.++.||.+...
T Consensus 534 ---~s~~~~l~~~fpeG~~ 549 (1001)
T KOG0164|consen 534 ---NSKNPLLKSLFPEGNP 549 (1001)
T ss_pred ---hcCCchHHHhCCCCCh
Confidence 9999999999985433
No 19
>KOG0162|consensus
Probab=100.00 E-value=1.3e-38 Score=291.94 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=138.6
Q ss_pred eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCC-cCcccccchhhhhccC
Q psy3268 8 DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVLDDQAKIKI 86 (194)
Q Consensus 8 fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~-p~Gll~lLDee~~~p~ 86 (194)
||+|+ .||||||||||+||||||.|++.+++.||++|.+|||.|.+|.|.||.-++|||+.| |.||+++|||.|...-
T Consensus 393 FEIFe-~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 393 FEIFE-NNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeecc-cCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 99999 999999999999999999999999999999999999999999999999999999975 8899999999999754
Q ss_pred CC--cchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhhhhhhccC
Q psy3268 87 ST--EINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVSYTEAITT 159 (194)
Q Consensus 87 ~t--~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~~~~~~~S 159 (194)
+. .+|.+|+++|+ |++|.. +...|.|+ ||||+|+| +++||.+||+|.|..|++.+++ +|
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~---~s~~FvIk-HYAGdVtY-------di~G~~drNrD~L~~DlieLm~---ts 537 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFES---RSNGFVIK-HYAGDVTY-------DIDGFCDRNRDVLFKDLIELMQ---TS 537 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCcccc---ccCceEEE-Eeccceee-------ecccccccchhHHHHHHHHHHh---cc
Confidence 33 26999999998 777764 56789999 99999999 9999999999999999999996 99
Q ss_pred cHHHHHhhccchh
Q psy3268 160 TTEFISEFYYDEE 172 (194)
Q Consensus 160 ~~~~i~~lf~~~~ 172 (194)
+++|++.||.+..
T Consensus 538 ~~~Fl~slFPe~v 550 (1106)
T KOG0162|consen 538 ENPFLKSLFPENV 550 (1106)
T ss_pred chHHHHHhCchhh
Confidence 9999999997543
No 20
>KOG0163|consensus
Probab=100.00 E-value=2e-37 Score=284.96 Aligned_cols=173 Identities=27% Similarity=0.431 Sum_probs=153.3
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||.|. +||||||||||||||||+||++++++.||+.|..||+.++.|.|.||++||+||+.|..|||.|
T Consensus 451 ~fiGVLDiAGFEyf~-~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~Gifdl 529 (1259)
T KOG0163|consen 451 FFIGVLDIAGFEYFA-VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDL 529 (1259)
T ss_pred ceeEEEeeccceeee-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhh
Confidence 47888 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc----CC-CCCCCC----------CCCCceeEeeeeccceeecCcccccCchhhhhccC
Q psy3268 78 LDDQAKIKISTEINETKLVKSA----IP-GTNKST----------RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGL 142 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~----~~-~~~~~~----------~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~ 142 (194)
||||.++|+++ +..|..+.+ +. .+..|+ +....|.|+ ||||.|.| ....|++||.
T Consensus 530 LDEEaklP~~s--~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liR-HfAGaVCY-------eT~~FvEKNn 599 (1259)
T KOG0163|consen 530 LDEEAKLPKPS--YQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIR-HFAGAVCY-------ETEQFVEKNN 599 (1259)
T ss_pred hhhhccCCCcc--hHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeee-ecccceee-------chHHHHHhcc
Confidence 99999999999 999998887 11 122232 346799999 99999999 9999999999
Q ss_pred CccccchhhhhhhhccCcHHHHHhhccchhhhhhhcCCceeeeeecc
Q psy3268 143 DEFHVYVPVSYTEAITTTTEFISEFYYDEEAHALQLGSGTLILNSIS 189 (194)
Q Consensus 143 D~l~~~~~~~~~~~~~S~~~~i~~lf~~~~~~~~~~g~~~~~~~~~s 189 (194)
|.|+..+..++. .|++++|..||.....+......|+|...|+.
T Consensus 600 D~LH~SLe~Li~---es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVG 643 (1259)
T KOG0163|consen 600 DALHNSLEGLIE---ESDNPLLVSLFPSGSSTSAKQTRGKLKFISVG 643 (1259)
T ss_pred HHHHHHHHHHHH---hccchHHHHHccCCCCCccccccceeeEEehh
Confidence 999999999997 89999999999876555445566777666654
No 21
>KOG0160|consensus
Probab=100.00 E-value=1.5e-35 Score=280.02 Aligned_cols=154 Identities=36% Similarity=0.510 Sum_probs=147.0
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.+||| ||.|+ .|+||||||||+||+||+.|++|+|+.|+++|.+|+|+|..++|.||++|+++|++ |.|+++|
T Consensus 368 ~~igVLDiYgFEsF~-~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~L 445 (862)
T KOG0160|consen 368 RFIGVLDIYGFESFE-VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILAL 445 (862)
T ss_pred ceeeeehcccccccc-cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhc
Confidence 46777 99999 99999999999999999999999999999999999999999999999999999997 8999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCCCCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPVS 152 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~~ 152 (194)
|||+|.+|.++ |++|..+|. ++.|.+|+.....|+|. ||||+|+| ++.+||+||+|.++++...+
T Consensus 446 lde~c~lp~~t--~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~-hyAg~v~y-------~~~~fL~knrd~v~~el~~l 515 (862)
T KOG0160|consen 446 LDEECMLPKGT--DETLAQKLYQTLKRNKRFTKPRLSRTDFRVA-HYAGDVTY-------DTEGFLEKNRDYVSDELIDL 515 (862)
T ss_pred cchhccCCCCC--cchHHHHHHHHhccCCccCCCCCCcCCcccc-cccCcccc-------chhhhccCCccccCHHHHhh
Confidence 99999999999 999999997 78889999999999999 99999999 99999999999999999999
Q ss_pred hhhhccCcHHHHHhhccch
Q psy3268 153 YTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 153 ~~~~~~S~~~~i~~lf~~~ 171 (194)
+. .|+++++..+|.+.
T Consensus 516 l~---~s~~~~~~~~~~~~ 531 (862)
T KOG0160|consen 516 LL---ASDCHFVAGLAPPL 531 (862)
T ss_pred hh---hcccchHHHhccch
Confidence 96 89999999999843
No 22
>KOG4229|consensus
Probab=99.96 E-value=3e-30 Score=249.05 Aligned_cols=155 Identities=35% Similarity=0.531 Sum_probs=141.3
Q ss_pred cccce-----eecCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHHHHhhhCCcccccccCCchhHHHHhhCCcCccccc
Q psy3268 3 QWSNI-----DKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 77 (194)
Q Consensus 3 ~~~~~-----fE~f~~~NsfEQLciNyaNEkLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~Gll~l 77 (194)
.|||| ||+|+ .|+|||+|||||||+||.+|++|+|..|+++|..|+|.|..+.|.||..|+|||..||.||+.+
T Consensus 427 ~~IgiLdiFgfE~f~-~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~l 505 (1062)
T KOG4229|consen 427 LSIGILDIFGFENFE-RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSL 505 (1062)
T ss_pred ceeehhhhhcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhe
Confidence 46777 99999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcchhHHHHHhc-----CCCCCCC-CCCCCceeEeeeeccceeecCcccccCchhhhhccCCccccchhh
Q psy3268 78 LDDQAKIKISTEINETKLVKSA-----IPGTNKS-TRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGLDEFHVYVPV 151 (194)
Q Consensus 78 LDee~~~p~~t~~d~~fl~~l~-----~~~~~~~-~~~~~~F~I~~HyaG~V~Y~~~~~~~~~~~~l~kn~D~l~~~~~~ 151 (194)
||||+.+|+++ |.+++.|+. +..+..| ......|+|. ||+|.|.| ++.||++||+|.+..++..
T Consensus 506 iDees~fP~~t--d~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~-Hyagkv~y-------~~~~flekNrD~~~~d~~~ 575 (1062)
T KOG4229|consen 506 IDEESRFPKAT--DQTLLLKLNMQHGSNNLYVFPKSRVETVFGIT-HYAGKVQY-------NIRGFLEKNRDTVRNDLVN 575 (1062)
T ss_pred ecccCcCCchH--HHHHHHHhhhhhhcccccccccccccceeeee-eecceehh-------hhhhHHHhhhhhhhhhHHh
Confidence 99999999999 999999998 2344444 4567799999 99999999 9999999999999999999
Q ss_pred hhhhhccCcHHHHHhhccch
Q psy3268 152 SYTEAITTTTEFISEFYYDE 171 (194)
Q Consensus 152 ~~~~~~~S~~~~i~~lf~~~ 171 (194)
+++ .|.+.++..+....
T Consensus 576 ~~~---s~~~~~~~~~~~~~ 592 (1062)
T KOG4229|consen 576 LLR---SSDESLLRQLVNGD 592 (1062)
T ss_pred hcc---cccchhhcccCCCC
Confidence 886 57788887777644
No 23
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=23.96 E-value=61 Score=21.05 Aligned_cols=15 Identities=27% Similarity=-0.004 Sum_probs=13.4
Q ss_pred CCceeEeeeeccceee
Q psy3268 110 VPKCWIRGQYVGNHRR 125 (194)
Q Consensus 110 ~~~F~I~~HyaG~V~Y 125 (194)
+..|.|. |-.|.|+|
T Consensus 4 K~~F~~~-hg~GNvR~ 18 (58)
T PF09322_consen 4 KVIFQIY-HGEGNVRY 18 (58)
T ss_pred ceeEEEE-EcCCceeE
Confidence 4579999 99999999
No 24
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=21.80 E-value=97 Score=16.92 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=13.3
Q ss_pred CCCCCCCCCCceeEeeeeccceee
Q psy3268 102 GTNKSTRSVPKCWIRGQYVGNHRR 125 (194)
Q Consensus 102 ~~~~~~~~~~~F~I~~HyaG~V~Y 125 (194)
.+.+|+..+ .+-|.-|-.|.|+|
T Consensus 3 ~~nkps~tn-aynvtt~~dgtvsy 25 (27)
T PF04022_consen 3 TYNKPSETN-AYNVTTNQDGTVSY 25 (27)
T ss_pred cccCccccc-ceeeEeccCceEec
Confidence 344444332 34444388899998
Done!