RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3268
(194 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 131 bits (331), Expect = 1e-35
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 76 CVLDDQAK 83
+LD++ +
Sbjct: 523 DILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 129 bits (326), Expect = 5e-35
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 76 CVLDDQ 81
+LD+
Sbjct: 457 SLLDEA 462
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 126 bits (318), Expect = 5e-34
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 76 CVLDDQ 81
+LD++
Sbjct: 507 DLLDEE 512
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 124 bits (314), Expect = 2e-33
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 76 CVLDDQ 81
+LD++
Sbjct: 507 DLLDEE 512
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 120 bits (302), Expect = 8e-32
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 72
SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 73 GLLCVLDDQ 81
GLL +LD++
Sbjct: 504 GLLALLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 119 bits (301), Expect = 1e-31
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 73
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 74 LLCVLDDQ 81
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 119 bits (301), Expect = 1e-31
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 73
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 74 LLCVLDDQ 81
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 118 bits (298), Expect = 2e-31
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 74
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 75 LCVLDDQ 81
+ +L+++
Sbjct: 531 MSILEEE 537
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 118 bits (298), Expect = 2e-31
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 74
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 75 LCVLDDQ 81
L +L+++
Sbjct: 530 LSILEEE 536
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 116 bits (292), Expect = 1e-30
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 72
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 73 GLLCVLDDQAK 83
G+L +LD++
Sbjct: 535 GVLALLDEECW 545
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 44/225 (19%), Positives = 61/225 (27%), Gaps = 101/225 (44%)
Query: 21 CINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-----DN-----------TLCL 64
N E +Q +V + N + +E S N L L
Sbjct: 341 ISNLTQEQVQ----DYV-----NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 65 QLVEGK-PNGLLCVLDDQAKIKISTEINETKLVKSAIPGTNKSTR----SVPKCWIRGQY 119
L + K P+GL DQ++I S E KL S R + P +
Sbjct: 392 TLRKAKAPSGL-----DQSRIPFS----ERKLK--------FSNRFLPVASP-------F 427
Query: 120 VGNHRRLNRLAETGEL--------GVLLKGLD-EFHVY--------------VPVSYTEA 156
H L L +L V D + VY + +
Sbjct: 428 ---HSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 157 ITT-------TTEFISEFYYDEEAHALQLGSGTLILNSISGSSTL 194
I TT+F + H L G G SG L
Sbjct: 483 IIRLPVKWETTTQF-------KATHILDFGPG-----GASGLGVL 515
Score = 26.6 bits (58), Expect = 7.9
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 25/64 (39%)
Query: 117 GQYVGNHRRLNRLAETGELG----VLLKGLDEFHVYVPVSYTEAITTTTEFISEFYYDEE 172
G+++G + ++ L E ++G VL L EF + + +
Sbjct: 62 GKFLG-Y--VSSLVEPSKVGQFDQVLNLCLTEFE------------------NCYLEGND 100
Query: 173 AHAL 176
HAL
Sbjct: 101 IHAL 104
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 32.4 bits (74), Expect = 0.019
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 103 TNKSTRSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+ P+ Y G++ E L LK
Sbjct: 54 AGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 32.4 bits (74), Expect = 0.029
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+VP + G G + + +L G+L L+
Sbjct: 69 GTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.041
Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 32/153 (20%)
Query: 7 IDKRF---VNWRSF-EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTL 62
+ + + W + E LQ Q + + I+ R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 63 CLQLVEGKPNGLLCVLDD------------QAKIKISTEINETKLVKSAIPGTNKSTRSV 110
L + N LL VL + KI ++T K V + + S+
Sbjct: 236 RLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISL 291
Query: 111 PKCWIRGQYVGNHRRLNRLAETGELGVLLKGLD 143
+H + L +LLK LD
Sbjct: 292 -----------DHHSMT-LTPDEVKSLLLKYLD 312
Score = 33.3 bits (75), Expect = 0.044
Identities = 35/250 (14%), Positives = 68/250 (27%), Gaps = 86/250 (34%)
Query: 10 RFVNWRSFE--------QLCINY--ANEHLQYYFNQHVFQYEQEEYNKE----GIRWRHI 55
+ NW+ + +N E+ + + VF + + W +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---PSAHIPTILLSLIWFDV 399
Query: 56 EFSD-----NTLCLQ-LVEGKPNGLLCVLDD-QAKIKISTEINETKLVKSAI----PGTN 104
SD N L LVE +P + ++K+ E NE L +S +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKT 458
Query: 105 KSTRSVPKCWIRG---QYVGNHRRLNRLAETGEL-------------------------G 136
+ + ++ ++G+H + E L G
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 137 VLLKGLDEFHVYVP------VSYTEAITTTTEFI-----------------------SEF 167
+L L + Y P Y + +F+ E
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 168 YYDEEAHALQ 177
++E +Q
Sbjct: 579 IFEEAHKQVQ 588
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 31.9 bits (73), Expect = 0.044
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
R+VP+ ++ G ++G +RL + G+L L+
Sbjct: 79 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 31.4 bits (72), Expect = 0.059
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+VP ++ G+++G +L G+L ++L
Sbjct: 72 HTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 31.1 bits (71), Expect = 0.084
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+VP +I G+ +G + + EL LL+
Sbjct: 72 GTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 31.3 bits (71), Expect = 0.094
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
R+VP+ ++ G ++G +RL + G+L L+
Sbjct: 101 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+VP+ +I Q++G + L L G L LLK
Sbjct: 50 TTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 30.4 bits (69), Expect = 0.15
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGL 142
++VP +I G+++G + L L + G+L +LK +
Sbjct: 93 KTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 127
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 29.9 bits (68), Expect = 0.18
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
++VP ++ +VG + + ++G L LL+
Sbjct: 69 KTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
R+VP+ +I + +G L + + GEL L+
Sbjct: 67 RTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 29.5 bits (67), Expect = 0.22
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+ P+ +I +VG L L + G+L LLK
Sbjct: 55 NTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 29.5 bits (67), Expect = 0.27
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
++VP+ + +G + L + LG +L
Sbjct: 74 KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 29.6 bits (67), Expect = 0.30
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
R+VP +I G+++G + L L ETGEL LL+
Sbjct: 81 RTVPNIYINGKHIGGNDDLQELRETGELEELLE 113
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 30.5 bits (68), Expect = 0.33
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKGL 142
R+VP +I G+++G + L L ETGEL LL+ +
Sbjct: 317 RTVPNIYINGKHIGGNDDLQELRETGELEELLEPI 351
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 28.3 bits (64), Expect = 0.47
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+ P+ +I +VG L L G+L LL+
Sbjct: 54 NTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 28.8 bits (64), Expect = 0.56
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
P+ + +Y G++ E+ + L
Sbjct: 71 PLPPQIFNGDRYCGDYDSFFESKESNTVFSFLG 103
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 28.4 bits (64), Expect = 0.57
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
RS+P+ +I Q++G + L G+L LL
Sbjct: 66 RSLPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 28.4 bits (63), Expect = 0.79
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
P+ + QY G++ E + L
Sbjct: 63 PLPPQIFNESQYRGDYDAFFEARENNAVYAFLG 95
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A
rhogap, protein phosphorylation, alternative splicing,
anti-oncogene, cell cycle; NMR {Homo sapiens}
Length = 69
Score = 26.1 bits (57), Expect = 2.7
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 4 WSNIDKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQE 43
W ++ ++ ++ + + F QH+ + + E
Sbjct: 30 WLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKHE 69
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 5.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 26 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 59
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 26.4 bits (58), Expect = 7.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 7 IDKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNK 47
I +R ++ I YA + LQ F H+ Q E E K
Sbjct: 334 IGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 26.0 bits (57), Expect = 9.5
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 3 QWSNIDKRFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 60
+W I K F ++ YF + ++ + + E+
Sbjct: 628 EWGQIKKHFNK---QFHGEGYDIAFKVKSYFEDN-EADVRKSIDNFHVLKNKEEYEIC 681
>2hql_A Hypothetical protein Mg376 homolog; structural genomics,
conserved hypothetical protein, GI:1673959, MPN554, OB
fold; 2.00A {Mycoplasma pneumoniae}
Length = 110
Score = 25.1 bits (54), Expect = 9.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 9 KRFVNWRSFEQLCINYANEHLQYYFNQHVFQYE 41
RF R F + YAN L Y +H +Y+
Sbjct: 36 MRFFGERLFTDYYVIYANGQLAYELEKHTKKYK 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,947,629
Number of extensions: 164625
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 40
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)