RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3268
(194 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 77.8 bits (191), Expect = 1e-17
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 76 CVLDDQAKIKISTE 89
+LD+ I ST+
Sbjct: 449 SLLDEACLIAKSTD 462
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 75.1 bits (184), Expect = 1e-16
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 13 NWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 72
++ SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 422 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM 481
Query: 73 GLLCVLDDQAKIKISTEINETKLVKSAIPGTNKSTRSVPKCWIRGQYVGNHRRLNRLAET 132
G+ +L+++ +T+ + + G + + + + + + +
Sbjct: 482 GIFSILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDY 541
Query: 133 GELGVLLKGLDEFHVYV 149
G L K D + V
Sbjct: 542 NISGWLEKNKDPLNETV 558
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 73.6 bits (180), Expect = 3e-16
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
Query: 11 FVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 69
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451
Query: 70 --KPNGLLCVLDDQAKIKISTEINETKLVKSAIPGTNKSTRSVPKCWIRGQYVGNHRRLN 127
P G+L +LD++ +T +T V+ I + ++ +
Sbjct: 452 PTNPPGVLALLDEECWFPKAT---DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYA 508
Query: 128 RLAETGELGVLLKGLDEFHVYVPVSYTEAITTTTEFISEFYYDEEAHALQLGSGTLILNS 187
L K +D + V + ++ +F+++ + D + + +S
Sbjct: 509 GKVTYNASAWLTKNMDPLNDNVTSLLNQ---SSDKFVADLWKDVDRIVGLDQMAKMTESS 565
Query: 188 ISGSS 192
+ +S
Sbjct: 566 LPSAS 570
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 72.4 bits (177), Expect = 8e-16
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 14 WRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 73
+ SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G
Sbjct: 421 FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMG 480
Query: 74 LLCVLDDQAKIKISTEINETKLVKSAIPGTNK 105
+L +L+++ + + + + G N+
Sbjct: 481 ILSILEEECMFPKADDKSFQDKLYQNHMGKNR 512
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 69.8 bits (170), Expect = 8e-15
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444
Query: 76 CVLDDQAKIKISTE 89
+LD++ K+ ++
Sbjct: 445 DLLDEECKMPKGSD 458
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 68.2 bits (166), Expect = 2e-14
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 14 WRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KP 71
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P
Sbjct: 416 VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 475
Query: 72 NGLLCVLDDQAKIKISTE 89
G+L +LD+Q+ +T+
Sbjct: 476 PGILALLDEQSVFPNATD 493
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 32.7 bits (74), Expect = 0.008
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLKG 141
+ P+ ++RG VG + L + GEL +LKG
Sbjct: 69 PTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 30.6 bits (69), Expect = 0.030
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+ P+ Y G++ E L LK
Sbjct: 59 ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 29.6 bits (66), Expect = 0.055
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 109 SVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
+VP+ +I Q++G + L L G L LLK
Sbjct: 51 TVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 28.9 bits (64), Expect = 0.14
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 108 RSVPKCWIRGQYVGNHRRLNRLAETGELGVLLK 140
R+VP+ +I + +G L + + GEL L+
Sbjct: 67 RTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 5.1
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 22 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 60
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 24.3 bits (52), Expect = 9.7
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 10 RFVNWRSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 69
E+L +A+ ++ + + + E + + +V+
Sbjct: 102 ISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDP 161
Query: 70 KPNGLLCVLDDQAKIK---ISTEINETKLVKSAIPGTNKSTRSV 110
+ + I ++ ++ LV IPG + + RS+
Sbjct: 162 TKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSI 205
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,643
Number of extensions: 32898
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 13
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)