Query psy327
Match_columns 168
No_of_seqs 163 out of 1167
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 20:45:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 5.3E-28 1.8E-32 185.6 7.7 133 7-142 23-185 (192)
2 2xqn_T Testin, TESS; metal-bin 99.9 8.6E-28 2.9E-32 172.7 5.9 104 7-129 19-124 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 8.4E-26 2.9E-30 163.2 5.8 104 7-130 18-126 (131)
4 1rut_X Flinc4, fusion protein 99.9 1.5E-25 5E-30 171.5 4.8 114 7-140 21-139 (188)
5 2rgt_A Fusion of LIM/homeobox 99.9 1.8E-25 6.2E-30 168.3 3.8 109 7-136 22-132 (169)
6 2jtn_A LIM domain-binding prot 99.9 5.8E-24 2E-28 161.8 5.6 102 7-129 76-179 (182)
7 2cup_A Skeletal muscle LIM-pro 99.8 4.9E-22 1.7E-26 137.2 4.0 80 7-105 22-101 (101)
8 2ehe_A Four and A half LIM dom 99.8 1E-19 3.4E-24 121.2 4.5 81 37-137 1-81 (82)
9 2cuq_A Four and A half LIM dom 99.8 1.1E-19 3.9E-24 120.3 3.3 79 37-137 1-79 (80)
10 1x3h_A Leupaxin; paxillin fami 99.8 2.1E-19 7.1E-24 119.0 2.5 79 37-137 1-79 (80)
11 1m3v_A FLIN4, fusion of the LI 99.7 3.6E-19 1.2E-23 127.2 2.2 91 7-132 21-115 (122)
12 2dlo_A Thyroid receptor-intera 99.7 9.2E-19 3.2E-23 116.3 3.3 78 37-137 2-80 (81)
13 2egq_A FHL1 protein; LIM domai 99.7 1.1E-18 3.7E-23 114.7 2.9 76 37-129 1-76 (77)
14 1x63_A Skeletal muscle LIM-pro 99.7 1.6E-18 5.3E-23 115.3 3.4 80 37-136 1-80 (82)
15 1x6a_A LIMK-2, LIM domain kina 99.7 1.7E-18 5.8E-23 114.9 2.0 78 37-136 1-80 (81)
16 1x68_A FHL5 protein; four-and- 99.7 2.9E-16 9.8E-21 103.0 7.2 73 49-139 3-75 (76)
17 1v6g_A Actin binding LIM prote 99.6 1.9E-16 6.5E-21 105.0 6.3 75 38-134 2-77 (81)
18 1j2o_A FLIN2, fusion of rhombo 99.6 1.1E-16 3.7E-21 113.0 4.6 88 7-133 19-108 (114)
19 1iml_A CRIP, cysteine rich int 99.6 8.5E-16 2.9E-20 100.6 5.4 70 71-143 1-72 (76)
20 2cup_A Skeletal muscle LIM-pro 99.6 2.7E-15 9.1E-20 103.2 6.4 71 72-145 7-79 (101)
21 2d8z_A Four and A half LIM dom 99.6 1.1E-15 3.8E-20 98.4 4.2 64 71-137 6-69 (70)
22 2cur_A Skeletal muscle LIM-pro 99.6 1.2E-15 4.2E-20 98.0 3.6 64 71-137 6-69 (69)
23 2iyb_E Testin, TESS, TES; LIM 99.6 1.8E-15 6.2E-20 96.3 3.7 46 83-130 17-64 (65)
24 1x4k_A Skeletal muscle LIM-pro 99.6 2.4E-15 8.4E-20 97.2 4.3 63 72-137 7-71 (72)
25 1wyh_A SLIM 2, skeletal muscle 99.6 2.5E-15 8.4E-20 97.2 4.1 63 72-137 7-71 (72)
26 1wig_A KIAA1808 protein; LIM d 99.5 4.4E-15 1.5E-19 96.7 5.2 61 71-134 6-67 (73)
27 1nyp_A Pinch protein; LIM doma 99.5 1.9E-15 6.5E-20 96.3 2.7 60 71-133 6-65 (66)
28 2dar_A PDZ and LIM domain prot 99.5 3.9E-15 1.3E-19 100.6 3.9 70 46-137 20-89 (90)
29 1x4l_A Skeletal muscle LIM-pro 99.5 7.5E-15 2.6E-19 95.0 5.1 50 83-135 22-71 (72)
30 2xqn_T Testin, TESS; metal-bin 99.5 3.2E-15 1.1E-19 106.7 3.6 71 72-145 5-76 (126)
31 1a7i_A QCRP2 (LIM1); LIM domai 99.5 4.5E-15 1.5E-19 98.3 3.5 68 72-142 9-77 (81)
32 2d8x_A Protein pinch; LIM doma 99.5 6.6E-15 2.3E-19 94.8 3.7 63 71-136 6-68 (70)
33 2dj7_A Actin-binding LIM prote 99.5 1.1E-14 3.7E-19 96.5 4.5 64 70-137 15-79 (80)
34 2cu8_A Cysteine-rich protein 2 99.5 1.2E-14 4E-19 95.1 4.4 64 71-137 10-75 (76)
35 1m3v_A FLIN4, fusion of the LI 99.5 4.4E-15 1.5E-19 105.8 1.8 72 71-145 6-82 (122)
36 2jtn_A LIM domain-binding prot 99.5 1.1E-14 3.7E-19 110.4 3.4 87 37-146 43-133 (182)
37 2cor_A Pinch protein; LIM doma 99.5 2.3E-14 7.7E-19 94.7 4.3 63 70-136 15-77 (79)
38 1iml_A CRIP, cysteine rich int 99.5 1.1E-14 3.7E-19 95.3 2.5 56 7-62 16-72 (76)
39 2xjy_A Rhombotin-2; oncoprotei 99.4 2.7E-14 9.1E-19 102.5 3.2 73 71-146 3-80 (131)
40 1x61_A Thyroid receptor intera 99.4 3.4E-14 1.2E-18 91.8 3.2 59 71-132 6-66 (72)
41 1x64_A Alpha-actinin-2 associa 99.4 4.5E-14 1.5E-18 95.1 3.7 63 70-135 25-87 (89)
42 1a7i_A QCRP2 (LIM1); LIM domai 99.4 1.6E-14 5.4E-19 95.6 1.1 55 7-61 23-77 (81)
43 1g47_A Pinch protein; LIM doma 99.4 3.9E-14 1.3E-18 92.7 2.8 62 72-136 13-76 (77)
44 1x62_A C-terminal LIM domain p 99.4 1.3E-14 4.6E-19 95.6 0.5 63 70-135 15-77 (79)
45 2l3k_A Rhombotin-2, linker, LI 99.4 2.6E-14 9E-19 101.9 1.3 78 46-143 1-81 (123)
46 2d8y_A Eplin protein; LIM doma 99.4 1.3E-13 4.4E-18 93.3 4.6 68 72-143 17-85 (91)
47 2co8_A NEDD9 interacting prote 99.4 2.3E-13 8E-18 90.4 5.6 62 71-135 16-80 (82)
48 1wyh_A SLIM 2, skeletal muscle 99.4 1E-13 3.4E-18 89.5 3.6 50 7-56 22-71 (72)
49 2d8z_A Four and A half LIM dom 99.4 6E-14 2.1E-18 90.2 2.2 50 7-56 20-69 (70)
50 1x68_A FHL5 protein; four-and- 99.4 3.3E-14 1.1E-18 93.0 1.0 53 6-58 23-75 (76)
51 2cur_A Skeletal muscle LIM-pro 99.4 6.5E-14 2.2E-18 89.8 2.0 50 7-56 20-69 (69)
52 1j2o_A FLIN2, fusion of rhombo 99.4 8.4E-14 2.9E-18 98.0 2.5 66 71-139 4-72 (114)
53 1x4k_A Skeletal muscle LIM-pro 99.4 1.1E-13 3.8E-18 89.3 2.1 50 7-56 22-71 (72)
54 2dj7_A Actin-binding LIM prote 99.4 1.3E-13 4.6E-18 91.2 2.5 49 7-56 31-79 (80)
55 2dar_A PDZ and LIM domain prot 99.4 1.1E-13 3.8E-18 93.4 2.0 50 7-56 40-89 (90)
56 1nyp_A Pinch protein; LIM doma 99.4 2.5E-13 8.4E-18 86.3 3.2 47 7-53 20-66 (66)
57 2ehe_A Four and A half LIM dom 99.4 2.9E-13 1E-17 89.6 3.7 50 7-56 32-81 (82)
58 2cu8_A Cysteine-rich protein 2 99.4 1.7E-13 5.7E-18 89.6 2.4 50 7-56 25-75 (76)
59 2rgt_A Fusion of LIM/homeobox 99.4 2.6E-13 8.8E-18 101.6 3.6 71 72-146 8-79 (169)
60 1g47_A Pinch protein; LIM doma 99.3 1.6E-13 5.4E-18 89.7 1.6 49 7-55 28-76 (77)
61 3f6q_B LIM and senescent cell 99.3 2.4E-13 8.4E-18 87.4 2.4 63 49-131 9-71 (72)
62 1x4l_A Skeletal muscle LIM-pro 99.3 2.8E-13 9.6E-18 87.5 2.4 48 7-54 24-71 (72)
63 2cuq_A Four and A half LIM dom 99.3 4E-13 1.4E-17 88.4 2.8 50 7-56 30-79 (80)
64 1x64_A Alpha-actinin-2 associa 99.3 5.8E-13 2E-17 89.6 3.5 49 7-55 40-88 (89)
65 1x3h_A Leupaxin; paxillin fami 99.3 3.1E-13 1.1E-17 89.0 1.9 50 7-56 30-79 (80)
66 2l4z_A DNA endonuclease RBBP8, 99.3 4.9E-13 1.7E-17 95.5 2.7 59 70-131 61-122 (123)
67 1rut_X Flinc4, fusion protein 99.3 2.4E-13 8.1E-18 103.5 0.3 72 72-146 7-83 (188)
68 2dlo_A Thyroid receptor-intera 99.3 4.5E-13 1.5E-17 88.5 1.5 50 7-56 30-80 (81)
69 1x63_A Skeletal muscle LIM-pro 99.3 9.9E-13 3.4E-17 86.9 3.1 49 7-55 32-80 (82)
70 1x62_A C-terminal LIM domain p 99.3 3.5E-13 1.2E-17 88.8 0.8 49 7-55 30-78 (79)
71 2d8x_A Protein pinch; LIM doma 99.3 9.8E-13 3.4E-17 84.5 2.7 48 7-54 20-67 (70)
72 2cor_A Pinch protein; LIM doma 99.3 2.4E-12 8E-17 84.9 4.2 48 7-55 30-77 (79)
73 2d8y_A Eplin protein; LIM doma 99.3 8.9E-13 3E-17 89.1 1.6 50 7-56 31-80 (91)
74 1x61_A Thyroid receptor intera 99.2 2.2E-12 7.6E-17 83.2 2.7 50 6-56 21-70 (72)
75 1b8t_A Protein (CRP1); LIM dom 99.2 2.4E-12 8.3E-17 98.2 2.8 67 72-141 9-76 (192)
76 1wig_A KIAA1808 protein; LIM d 99.2 7.1E-12 2.4E-16 81.3 4.2 46 7-52 20-66 (73)
77 2l3k_A Rhombotin-2, linker, LI 99.2 1E-11 3.4E-16 88.4 4.2 56 7-62 25-81 (123)
78 1x6a_A LIMK-2, LIM domain kina 99.2 1.3E-11 4.5E-16 81.3 3.3 50 7-56 30-81 (81)
79 3f6q_B LIM and senescent cell 99.1 6.1E-12 2.1E-16 80.7 1.1 45 7-51 28-72 (72)
80 2co8_A NEDD9 interacting prote 99.1 7E-12 2.4E-16 83.1 0.5 48 7-54 31-80 (82)
81 2egq_A FHL1 protein; LIM domai 99.1 2E-11 6.8E-16 79.6 1.1 42 7-48 35-76 (77)
82 2iyb_E Testin, TESS, TES; LIM 99.1 3.2E-11 1.1E-15 76.4 1.4 44 6-49 18-64 (65)
83 2l4z_A DNA endonuclease RBBP8, 99.1 1.5E-11 5.3E-16 87.7 -0.1 45 7-51 77-123 (123)
84 1v6g_A Actin binding LIM prote 98.7 1.2E-09 4E-14 71.9 0.1 44 7-50 30-74 (81)
85 1zfo_A LAsp-1; LIM domain, zin 97.3 5.9E-05 2E-09 40.5 0.9 27 71-99 4-31 (31)
86 1jjd_A Metallothionein, SMTA; 83.4 0.6 2.1E-05 28.0 1.9 34 100-133 9-42 (55)
87 4ap4_A E3 ubiquitin ligase RNF 82.1 0.37 1.3E-05 32.9 0.7 47 17-63 6-60 (133)
88 1t1h_A Gspef-atpub14, armadill 68.1 4.9 0.00017 24.6 3.2 46 16-62 6-54 (78)
89 1jm7_B BARD1, BRCA1-associated 65.4 3.7 0.00013 27.6 2.4 44 18-62 22-66 (117)
90 2jne_A Hypothetical protein YF 65.1 5.5 0.00019 26.6 3.0 39 19-62 33-72 (101)
91 2djb_A Polycomb group ring fin 64.7 3.5 0.00012 25.0 2.0 47 16-62 13-61 (72)
92 2jrp_A Putative cytoplasmic pr 64.5 9.1 0.00031 24.6 3.9 12 19-30 3-14 (81)
93 2ysl_A Tripartite motif-contai 61.6 3.8 0.00013 24.7 1.7 45 17-62 19-68 (73)
94 2ecy_A TNF receptor-associated 61.3 3.7 0.00013 24.4 1.6 46 16-62 13-61 (66)
95 2d8t_A Dactylidin, ring finger 55.9 9.1 0.00031 23.0 2.8 46 16-62 13-60 (71)
96 2csy_A Zinc finger protein 183 55.4 6.7 0.00023 24.2 2.1 45 17-62 14-60 (81)
97 2ecv_A Tripartite motif-contai 54.3 8.7 0.0003 23.5 2.5 45 17-62 18-70 (85)
98 2y43_A E3 ubiquitin-protein li 53.1 5.2 0.00018 25.8 1.3 44 18-62 22-68 (99)
99 2kre_A Ubiquitin conjugation f 52.2 14 0.00047 24.2 3.4 47 15-62 26-74 (100)
100 1chc_A Equine herpes virus-1 r 52.1 10 0.00035 22.3 2.5 44 19-62 6-51 (68)
101 4ayc_A E3 ubiquitin-protein li 51.6 9.8 0.00033 26.2 2.7 43 19-62 54-98 (138)
102 3ztg_A E3 ubiquitin-protein li 50.9 7.3 0.00025 24.6 1.7 44 17-61 12-60 (92)
103 2yur_A Retinoblastoma-binding 50.8 9 0.00031 23.3 2.1 46 16-62 13-63 (74)
104 2ecw_A Tripartite motif-contai 50.1 8 0.00028 23.7 1.8 45 17-62 18-70 (85)
105 2ckl_A Polycomb group ring fin 48.2 8.1 0.00028 25.3 1.7 44 18-62 15-61 (108)
106 2ecm_A Ring finger and CHY zin 48.0 13 0.00046 20.7 2.5 45 18-62 5-54 (55)
107 2das_A Zinc finger MYM-type pr 47.9 13 0.00043 22.5 2.3 31 99-129 21-54 (62)
108 3hcs_A TNF receptor-associated 46.1 8.9 0.0003 27.3 1.8 46 17-63 17-65 (170)
109 2ct2_A Tripartite motif protei 46.1 25 0.00086 21.6 3.8 47 16-62 13-67 (88)
110 2kr4_A Ubiquitin conjugation f 44.9 14 0.00048 23.3 2.4 46 16-62 12-59 (85)
111 3vk6_A E3 ubiquitin-protein li 44.6 10 0.00035 25.4 1.7 43 21-63 4-49 (101)
112 2gvi_A Conserved hypothetical 44.1 5 0.00017 30.1 0.1 31 98-129 172-202 (204)
113 1jm7_A BRCA1, breast cancer ty 43.8 11 0.00036 24.6 1.7 43 19-62 22-69 (112)
114 2eqg_A Tumor necrosis factor, 43.2 3.6 0.00012 23.3 -0.6 17 33-49 22-38 (49)
115 1x4j_A Ring finger protein 38; 42.7 22 0.00074 21.4 3.0 47 17-63 22-72 (75)
116 1wgm_A Ubiquitin conjugation f 42.4 18 0.0006 23.6 2.6 46 16-62 20-68 (98)
117 2e5r_A Dystrobrevin alpha; ZZ 42.0 14 0.00047 22.3 1.9 39 8-48 3-44 (63)
118 2xeu_A Ring finger protein 4; 42.0 6.8 0.00023 22.7 0.5 44 19-62 4-55 (64)
119 2ckl_B Ubiquitin ligase protei 40.7 9.5 0.00033 27.0 1.2 45 17-62 53-101 (165)
120 1rmd_A RAG1; V(D)J recombinati 40.6 13 0.00045 24.6 1.8 45 18-63 23-70 (116)
121 2ea6_A Ring finger protein 4; 40.4 6.9 0.00024 23.0 0.3 47 16-62 13-67 (69)
122 2ecn_A Ring finger protein 141 39.3 9.6 0.00033 22.6 0.9 44 17-62 14-59 (70)
123 3l11_A E3 ubiquitin-protein li 39.0 10 0.00034 25.1 1.0 45 17-62 14-61 (115)
124 1e4u_A Transcriptional repress 39.0 14 0.0005 23.0 1.7 46 17-62 10-61 (78)
125 3fl2_A E3 ubiquitin-protein li 38.4 16 0.00056 24.4 2.0 44 18-62 52-98 (124)
126 1bor_A Transcription factor PM 38.0 10 0.00034 21.8 0.8 43 18-62 6-48 (56)
127 3hct_A TNF receptor-associated 37.8 15 0.00051 24.5 1.8 46 17-63 17-65 (118)
128 1g25_A CDK-activating kinase a 37.4 13 0.00046 21.7 1.3 44 19-62 4-54 (65)
129 2egp_A Tripartite motif-contai 35.9 8.8 0.0003 23.3 0.3 32 17-49 11-42 (79)
130 3lrq_A E3 ubiquitin-protein li 35.3 13 0.00045 24.0 1.1 43 19-62 23-69 (100)
131 2ep4_A Ring finger protein 24; 35.2 32 0.0011 20.4 2.9 46 18-63 15-64 (74)
132 3knv_A TNF receptor-associated 34.9 8.7 0.0003 26.9 0.2 45 17-62 30-77 (141)
133 1z6u_A NP95-like ring finger p 34.5 20 0.00069 25.2 2.1 44 18-62 78-124 (150)
134 2ect_A Ring finger protein 126 34.0 28 0.00094 21.0 2.5 47 16-62 13-63 (78)
135 2ysj_A Tripartite motif-contai 32.9 18 0.00062 20.9 1.4 35 16-51 18-52 (63)
136 2c2l_A CHIP, carboxy terminus 32.8 25 0.00087 26.5 2.6 48 14-62 204-254 (281)
137 2d8v_A Zinc finger FYVE domain 31.8 11 0.00037 23.3 0.2 14 36-49 25-38 (67)
138 1iym_A EL5; ring-H2 finger, ub 31.6 30 0.001 19.1 2.2 43 19-61 6-53 (55)
139 4ic3_A E3 ubiquitin-protein li 31.6 28 0.00094 21.1 2.1 41 19-62 25-66 (74)
140 2f42_A STIP1 homology and U-bo 29.8 26 0.0009 25.7 2.1 46 16-62 104-152 (179)
141 2fiy_A Protein FDHE homolog; F 29.5 44 0.0015 26.7 3.5 26 89-117 215-240 (309)
142 3ng2_A RNF4, snurf, ring finge 28.9 11 0.00037 22.3 -0.2 22 88-111 35-64 (71)
143 1vq8_Z 50S ribosomal protein L 28.6 29 0.00098 22.2 1.8 15 100-114 47-61 (83)
144 4g9i_A Hydrogenase maturation 28.0 16 0.00053 33.0 0.6 64 39-108 106-188 (772)
145 2ecj_A Tripartite motif-contai 26.7 29 0.00097 19.4 1.5 32 17-49 14-45 (58)
146 1twf_L ABC10-alpha, DNA-direct 26.5 32 0.0011 21.3 1.7 26 98-128 28-53 (70)
147 3ttc_A HYPF, transcriptional r 26.5 16 0.00056 32.3 0.5 51 52-108 40-99 (657)
148 2kiz_A E3 ubiquitin-protein li 25.4 43 0.0015 19.5 2.2 46 17-62 13-62 (69)
149 2cs3_A Protein C14ORF4, MY039 24.6 44 0.0015 21.4 2.1 33 17-49 14-49 (93)
150 2yu4_A E3 SUMO-protein ligase 24.0 34 0.0012 21.8 1.6 34 16-50 5-39 (94)
151 1znf_A 31ST zinc finger from X 23.8 29 0.00098 15.2 0.9 11 99-109 2-12 (27)
152 3vth_A Hydrogenase maturation 23.3 21 0.00073 32.1 0.6 66 37-108 109-193 (761)
153 2bay_A PRE-mRNA splicing facto 23.0 69 0.0024 18.7 2.8 44 18-62 3-49 (61)
154 1vd4_A Transcription initiatio 22.8 15 0.0005 21.2 -0.4 17 92-108 33-49 (62)
155 1ard_A Yeast transcription fac 22.3 32 0.0011 15.3 1.0 11 99-109 3-13 (29)
156 2ecg_A Baculoviral IAP repeat- 22.1 32 0.0011 20.8 1.1 41 19-62 26-67 (75)
157 1pft_A TFIIB, PFTFIIBN; N-term 20.9 96 0.0033 17.1 3.0 27 99-129 6-33 (50)
158 1paa_A Yeast transcription fac 20.4 43 0.0015 15.0 1.2 12 99-110 3-14 (30)
159 1wim_A KIAA0161 protein; ring 20.1 58 0.002 20.4 2.1 32 19-50 6-39 (94)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=5.3e-28 Score=185.61 Aligned_cols=133 Identities=25% Similarity=0.442 Sum_probs=115.4
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccC---------------------
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVG--------------------- 65 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~--------------------- 65 (168)
+.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.+|++....+.
T Consensus 23 v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~ 102 (192)
T 1b8t_A 23 VQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN 102 (192)
T ss_dssp EEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred EEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCC
Confidence 46899999999999999999999989999999999999999999999999876431100
Q ss_pred --Cccc------cCCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327 66 --GHRT------RDLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 66 --g~~~------~~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
...| .+.|..|+++|. .+.|.++++.||+ +||+|..|+++|.+..|+..||++||+. |+.+++++.|.
T Consensus 103 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~f~~kc~ 179 (192)
T 1b8t_A 103 PNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHK--SCFRCAKCGKSLESTTLADKDGEIYCKG-CYAKNFGPKGF 179 (192)
T ss_dssp CCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECT--TTCBCTTTCCBCCSSSEEEETTEEEEHH-HHHHHTCCCCC
T ss_pred cCccccccccCCCCcCCCCCCEecCcEEEecCCCccch--hcCCccccCCCCCCCcccccCCEEeCHH-HHHHhcCCcCC
Confidence 0000 245999999997 5678999999999 9999999999998888999999999996 99999999999
Q ss_pred CCCCCC
Q psy327 137 SSGPGL 142 (168)
Q Consensus 137 ~~~~~~ 142 (168)
+|+.++
T Consensus 180 ~C~~~~ 185 (192)
T 1b8t_A 180 GFGQGA 185 (192)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 999874
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.94 E-value=8.6e-28 Score=172.65 Aligned_cols=104 Identities=30% Similarity=0.705 Sum_probs=95.5
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS 86 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~ 86 (168)
+.|+|+.||++||+|..|+++|.++.|+.+||++||+.||.++|+++|..|+++|.+. . .+|.
T Consensus 19 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~--~---------------~~~~ 81 (126)
T 2xqn_T 19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE--V---------------QRVT 81 (126)
T ss_dssp EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTT--S---------------CEEE
T ss_pred EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcC--c---------------eEEE
Confidence 5789999999999999999999998999999999999999999999999999999852 1 2589
Q ss_pred eCCceee--CCCCceecCCCCccCCCCCceecCCeeeecccccCC
Q psy327 87 HEGQHWH--ATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKG 129 (168)
Q Consensus 87 ~~~~~~H--~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~ 129 (168)
++++.|| + +||+|..|+++|.+..|++.||++||..+|++.
T Consensus 82 a~~~~~H~~~--~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 82 YNNFSWHAST--ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp ETTEEEESST--TTSBCTTTCCBCTTSEEEEETTEEESSHHHHHS
T ss_pred CCCCEeeCCC--CCcCcCCCCCccCCCeeEeECCEEcchHHhhhh
Confidence 9999999 9 999999999999999999999999999767643
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.92 E-value=8.4e-26 Score=163.16 Aligned_cols=104 Identities=22% Similarity=0.493 Sum_probs=93.2
Q ss_pred ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA 82 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~ 82 (168)
+.|+|+.||++||+|+.|+++|. +..|+.+||++||+.||.++|++ +|..|+++|.+.+
T Consensus 18 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e----------------- 80 (131)
T 2xjy_A 18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE----------------- 80 (131)
T ss_dssp EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-----------------
T ss_pred EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-----------------
Confidence 57899999999999999999996 36899999999999999999999 9999999997521
Q ss_pred CceeeCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCCC
Q psy327 83 GQMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGE 130 (168)
Q Consensus 83 ~~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~~ 130 (168)
.+|.++++.||+ +||+|..|+++| .+..|++.||++||.. |+.++
T Consensus 81 ~~~~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~~~~C~~-c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDKVYHL--ECFKCAACQKHFCVGDRYLLINSDIVCEQ-DIYEW 126 (131)
T ss_dssp EEEEETTEEEEG--GGCBCTTTCCBCCTTCEEEEETTEEEEGG-GHHHH
T ss_pred eeEeeCCceECc--cCcccCCCCCCCCCCCEEEEECCEEEcHH-HHHHH
Confidence 158899999999 999999999999 6888999999999996 77554
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.91 E-value=1.5e-25 Score=171.53 Aligned_cols=114 Identities=26% Similarity=0.501 Sum_probs=95.9
Q ss_pred ccCCCCCCCCCCccccccccccCC--CceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA 82 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~ 82 (168)
+.|+++.||++||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..|+++|.+. .
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~--e--------------- 83 (188)
T 1rut_X 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS--E--------------- 83 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT--S---------------
T ss_pred EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC--c---------------
Confidence 578999999999999999999975 6899999999999999999998 799999999742 1
Q ss_pred CceeeCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCCCCCCCCCCCCC
Q psy327 83 GQMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGEPPTPSDSSGP 140 (168)
Q Consensus 83 ~~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~ 140 (168)
.+|.++++.||+ +||+|..|+++| .+..|+..++++||.. |+.+.+...+-..+.
T Consensus 84 ~~i~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~g~~yC~~-c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 84 LVMRAQGNVYHL--KCFTCSTCRNRLVPGDRFHYINGSLFCEH-DRPTALINGHLNSGG 139 (188)
T ss_dssp EEEEETTEEECG--GGCBCTTTCCBCCTTCEEEEETTEEEEGG-GCCTTTC--------
T ss_pred EEEEcCCCEEeC--CCCeECCCCCCCCCCCeEEEECCeEECHH-HHHHHhcccccccCC
Confidence 158899999999 999999999999 5778999999999996 999888877765444
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.91 E-value=1.8e-25 Score=168.30 Aligned_cols=109 Identities=23% Similarity=0.524 Sum_probs=92.9
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS 86 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~ 86 (168)
+.|+|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++|..|+++|.+. .. ++.
T Consensus 22 ~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~--~~---------------v~~ 83 (169)
T 2rgt_A 22 LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT--QV---------------VRR 83 (169)
T ss_dssp EECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTT--SE---------------EEE
T ss_pred EEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCC--cE---------------EEE
Confidence 46899999999999999999998866 5899999999999999999999999999752 11 468
Q ss_pred eCCceeeCCCCceecCCCCccCC-CCCce-ecCCeeeecccccCCCCCCCCC
Q psy327 87 HEGQHWHATDSCFCCATCSLSLL-GRPFL-PRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 87 ~~~~~~H~~~~CF~C~~C~~~l~-~~~f~-~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
++++.||+ +||+|..|+++|. |..|+ ..||++||.. |+.+.....++
T Consensus 84 a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~-c~~~~~~~~~~ 132 (169)
T 2rgt_A 84 AQDFVYHL--HCFACVVCKRQLATGDEFYLMEDSRLVCKA-DYETAKQGGSG 132 (169)
T ss_dssp ETTEEEEG--GGCBCTTTCCBCCTTCEEEECTTSCEEEHH-HHHHHHHCC--
T ss_pred cCCceEee--CCCcCCCCCCCCCCCCceEEccCCeEECHH-HHHHHhhccCC
Confidence 99999999 9999999999995 66775 4699999996 88776555443
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.89 E-value=5.8e-24 Score=161.79 Aligned_cols=102 Identities=24% Similarity=0.552 Sum_probs=89.1
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS 86 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~ 86 (168)
+.|+|+.||++||+|..|+++|.+.. |.+||++||+.||.++|+++|..|+++|.+.. .++.
T Consensus 76 ~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-----------------~v~~ 137 (182)
T 2jtn_A 76 LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-----------------VVRR 137 (182)
T ss_dssp EEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSC-----------------CCCE
T ss_pred EEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCc-----------------eEEe
Confidence 46899999999999999999998866 57999999999999999999999999998521 1478
Q ss_pred eCCceeeCCCCceecCCCCccCC-CCCce-ecCCeeeecccccCC
Q psy327 87 HEGQHWHATDSCFCCATCSLSLL-GRPFL-PRAGVIFCSIACSKG 129 (168)
Q Consensus 87 ~~~~~~H~~~~CF~C~~C~~~l~-~~~f~-~~dg~~~C~~~C~~~ 129 (168)
++++.||+ +||+|..|+++|. |..|+ ..||++||.. |+.+
T Consensus 138 a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~-cy~~ 179 (182)
T 2jtn_A 138 AQDFVYHL--HCFACVVCKRQLATGDEFYLMEDSRLVCKA-DYET 179 (182)
T ss_dssp ETTEECCT--TTCCCTTTCCCCCTTCEEEECTTSCEECHH-HHHH
T ss_pred cCCCCEEe--CCCcCCCCCCCCCCCCceEEccCCEEECHH-HHHH
Confidence 99999999 9999999999995 66676 4699999996 7753
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.84 E-value=4.9e-22 Score=137.23 Aligned_cols=80 Identities=25% Similarity=0.664 Sum_probs=73.4
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS 86 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~ 86 (168)
+.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..|+++|.+ |+ .+|.
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~--~~---------------~~~~ 84 (101)
T 2cup_A 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA--GD---------------QNVE 84 (101)
T ss_dssp EEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS--SS---------------CEEE
T ss_pred EEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc--CC---------------eEEE
Confidence 578899999999999999999988889999999999999999999999999999984 21 2589
Q ss_pred eCCceeeCCCCceecCCCC
Q psy327 87 HEGQHWHATDSCFCCATCS 105 (168)
Q Consensus 87 ~~~~~~H~~~~CF~C~~C~ 105 (168)
++|+.||+ +||+|..|+
T Consensus 85 a~~~~~H~--~CF~C~~C~ 101 (101)
T 2cup_A 85 YKGTVWHK--DCFSGPSSG 101 (101)
T ss_dssp SSSCEEET--TTCCCTTCC
T ss_pred eCCcchHH--hCCCCCCCC
Confidence 99999999 999999995
No 8
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=121.19 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=72.6
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
+|++||++||.++|+++|..|+++|.+. +.+|.++++.||+ +||+|+.|+++|.+..|+..
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-----------------~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~ 61 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHD-----------------SRELFYEDRHFHE--GCFRCCRCQRSLADEPFTCQ 61 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-----------------CCBCCCSSCCCBT--TTSBCTTTCCBCSSCCEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccC-----------------cEEEEeCCccccc--cCCeecCCCCccCCCccEee
Confidence 6899999999999999999999999831 1258899999999 99999999999999899999
Q ss_pred CCeeeecccccCCCCCCCCCC
Q psy327 117 AGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 117 dg~~~C~~~C~~~~~~~~~~~ 137 (168)
+|+|||.. |+.+++++.|.+
T Consensus 62 ~~~~~C~~-c~~~~~~~~C~~ 81 (82)
T 2ehe_A 62 DSELLCND-CYCSAFSSGPSS 81 (82)
T ss_dssp TTEEEETT-TSSCCGGGSSCC
T ss_pred CCEEECHH-HHhhhcCCCCCC
Confidence 99999996 999998888763
No 9
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.1e-19 Score=120.29 Aligned_cols=79 Identities=27% Similarity=0.594 Sum_probs=72.1
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
+|++||++||.++++++|..|+++|.+ +.|.++++.||+ +||+|..|+++|.+..|++.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~ 59 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ-------------------GGVTYRDQPWHR--ECLVCTGCQTPLAGQQFTSR 59 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS-------------------CCEESSSSEECT--TTCBCSSSCCBCTTCCEEEC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC-------------------cEEEECCchhhh--hhCCcccCCCcCCCCeeEeE
Confidence 589999999999999999999999974 258999999999 99999999999998899999
Q ss_pred CCeeeecccccCCCCCCCCCC
Q psy327 117 AGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 117 dg~~~C~~~C~~~~~~~~~~~ 137 (168)
|+++||.. |+.+++++.|++
T Consensus 60 ~~~~yC~~-cy~~~f~~~c~s 79 (80)
T 2cuq_A 60 DEDPYCVA-CFGELFASGPSS 79 (80)
T ss_dssp SSSEEEHH-HHHHHTTCSTTC
T ss_pred CCEEECHH-HHHHHcCCCCCC
Confidence 99999996 899998888764
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=2.1e-19 Score=119.03 Aligned_cols=79 Identities=23% Similarity=0.557 Sum_probs=71.6
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
+|++||++||.++++++|..|+++|.+ +.|.++++.||+ +||+|..|+++|.+..|+..
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~ 59 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLE-------------------NYLSAMDTVWHP--ECFVCGDCFTSFSTGSFFEL 59 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS-------------------SCEEETTEEECT--TTCBCSSSCCBSCSSCCEES
T ss_pred CCCccchhHHhhhcCCccccCCCeecc-------------------eeEEECCCeEec--CcCChhhCCCCCCCCcEEeE
Confidence 578999999999999999999999974 258999999999 99999999999988889999
Q ss_pred CCeeeecccccCCCCCCCCCC
Q psy327 117 AGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 117 dg~~~C~~~C~~~~~~~~~~~ 137 (168)
|+++||.. |+.+++++.|.+
T Consensus 60 ~~~~yC~~-~y~~~f~~~C~~ 79 (80)
T 1x3h_A 60 DGRPFCEL-HYHHRRGSGPSS 79 (80)
T ss_dssp SSCEECHH-HHHHHHSSSCCC
T ss_pred CCEEECHH-HHHHHcCCCCCC
Confidence 99999996 888888888764
No 11
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.6e-19 Score=127.21 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=76.7
Q ss_pred ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA 82 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~ 82 (168)
+.|+++.||++||+|..|+++|. +..|+.+||++||+.||.++|++ +|..|+++|.+.
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~------------------ 82 (122)
T 1m3v_A 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG------------------ 82 (122)
T ss_dssp EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE------------------
T ss_pred EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch------------------
Confidence 56899999999999999999997 36799999999999999999999 999999999842
Q ss_pred CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327 83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP 132 (168)
Q Consensus 83 ~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~ 132 (168)
.|.+.|+ ..|.|+.|++.|++|||.. ++.+...
T Consensus 83 -~~~~~g~---------------~~l~g~~f~~~~~~~yC~~-~~~~~~~ 115 (122)
T 1m3v_A 83 -DVMVVGE---------------PTLMGGEFGDEDERLITRL-ENTQFDA 115 (122)
T ss_dssp -ESSSSSS---------------SSCCSCTTCCTTCCCCEEC-TTTTTTC
T ss_pred -heEEcCC---------------cCCCCCccEecCCEeEccC-cchhchh
Confidence 2334432 2578999999999999996 7766644
No 12
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=9.2e-19 Score=116.27 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=69.7
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
||++||++||. ++.++|..|+++|.+ ++|.++++.||+ +||+|..|+++|.+..|+..
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~-------------------~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~ 59 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD-------------------RILRAMGKAYHP--GCFTCVVCHRGLDGIPFTVD 59 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS-------------------CCEEETTEEECT--TTCBCSSSCCBCTTSCEECC
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc-------------------eeEEECCccccH--HhcCcccCCCccCCCeeEEC
Confidence 68999999999 789999999999973 258999999999 99999999999998888876
Q ss_pred -CCeeeecccccCCCCCCCCCC
Q psy327 117 -AGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 117 -dg~~~C~~~C~~~~~~~~~~~ 137 (168)
||++||.. |+.+++++.|.+
T Consensus 60 ~~g~~yC~~-cy~~~f~~~C~~ 80 (81)
T 2dlo_A 60 ATSQIHCIE-DFHRKFASGPSS 80 (81)
T ss_dssp TTCCCEEHH-HHHHHTTSSSCC
T ss_pred CCCEEECHH-HHHHHhcCcCCC
Confidence 79999996 898888888764
No 13
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=114.74 Aligned_cols=76 Identities=26% Similarity=0.639 Sum_probs=65.8
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
++++||++||.++++++|.+|+++|.+.+.. ++.|.++++.||+ +||+|..|+++|.+..|+..
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~--------------~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~ 64 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG--------------SSVVAYEGQSWHD--YCFHCKKCSVNLANKRFVFH 64 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC--------------CCEEEETTEEEET--TTCBCSSSCCBCTTSCCCEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCC--------------ceeEEECcceeCc--ccCEehhcCCCCCCCccEeE
Confidence 4789999999999999999999999852101 1269999999999 99999999999998899999
Q ss_pred CCeeeecccccCC
Q psy327 117 AGVIFCSIACSKG 129 (168)
Q Consensus 117 dg~~~C~~~C~~~ 129 (168)
+|++||.. |+.+
T Consensus 65 ~~~~yC~~-cy~~ 76 (77)
T 2egq_A 65 QEQVYCPD-CAKK 76 (77)
T ss_dssp TTEECCHH-HHHH
T ss_pred CCEEEChH-Hhcc
Confidence 99999996 7743
No 14
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.6e-18 Score=115.29 Aligned_cols=80 Identities=21% Similarity=0.578 Sum_probs=70.7
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR 116 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~ 116 (168)
++.+||++||.++++++|..|+++|.+. . .+|.++++.||+ +||+|..|+++|.+..|+..
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~--~---------------~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~ 61 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAG--D---------------QNVEYKGTVWHK--DCFTCSNCKQVIGTGSFFPK 61 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSS--S---------------CEEECSSCEEET--TTCCCSSSCCCCTTSCEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccC--c---------------eEEEECcccccc--ccCchhhCCCccCCCccEee
Confidence 4789999999999999999999999742 1 258999999999 99999999999988899999
Q ss_pred CCeeeecccccCCCCCCCCC
Q psy327 117 AGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 117 dg~~~C~~~C~~~~~~~~~~ 136 (168)
++++||.. |+.+++++.+.
T Consensus 62 ~~~~yC~~-cy~~~f~~~~~ 80 (82)
T 1x63_A 62 GEDFYCVT-CHETKFASGPS 80 (82)
T ss_dssp TTEEEEHH-HHHHHTSCCCS
T ss_pred CCEEECHH-HHHHHhCCCCC
Confidence 99999996 88888877664
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.7e-18 Score=114.91 Aligned_cols=78 Identities=19% Similarity=0.490 Sum_probs=68.1
Q ss_pred CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCC-CCCce-
Q psy327 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLL-GRPFL- 114 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~-~~~f~- 114 (168)
++.+||++||.++|+++|..|+++|.+ +.|.++++.||+ +||+|..|+++|. +..|+
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~-------------------~~~~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~ 59 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTG-------------------PFMVAGEFKYHP--ECFACMSCKVIIEDGDAYAL 59 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCS-------------------CCBCCTTCCBCT--TSCBCTTTCCBCCTTSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCc-------------------eEEEECCceecc--ccCCccCCCCccCCCCcEEE
Confidence 468999999999999999999999983 258899999999 9999999999994 67788
Q ss_pred ecCCeeeecccccCCCCCCCCC
Q psy327 115 PRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 115 ~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
..+++|||.. |+.+++++.+.
T Consensus 60 ~~~~~~~C~~-c~~~~~~~~~s 80 (81)
T 1x6a_A 60 VQHATLYCGK-CHNEVVSGPSS 80 (81)
T ss_dssp CSSSCEEEHH-HHHHHHCTTSC
T ss_pred eeCCEEECHH-HHHHHhcCCCC
Confidence 4899999996 88887776654
No 16
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.9e-16 Score=102.97 Aligned_cols=73 Identities=33% Similarity=0.723 Sum_probs=59.6
Q ss_pred hhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccC
Q psy327 49 TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128 (168)
Q Consensus 49 ~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~ 128 (168)
+|+++|..|+++|.+++. ++.|.++++.||+ +||+|..|+++|.+..|++.||+|||.. ||.
T Consensus 3 ~~~~~C~~C~~~I~~~g~---------------~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-cy~ 64 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTG---------------AKFICFQDSQWHS--ECFNCGKCSVSLVGKGFLTQNKEIFCQK-CGS 64 (76)
T ss_dssp TCCCCCTTTCCCCCTTTT---------------CCEEEETTEEEEG--GGCBCTTTCCBCSSSCEEEETTEEEETT-TTC
T ss_pred ccCCCCccCCCcccCCCC---------------ceeEEECCcccCc--ccCChhhCCCcCCCCceEeECCEEECHH-Hhh
Confidence 455666666666653211 1469999999999 9999999999999999999999999995 999
Q ss_pred CCCCCCCCCCC
Q psy327 129 GEPPTPSDSSG 139 (168)
Q Consensus 129 ~~~~~~~~~~~ 139 (168)
+++.+.|..+.
T Consensus 65 ~~f~~~C~~~s 75 (76)
T 1x68_A 65 GMDTDISGPSS 75 (76)
T ss_dssp CCCCCSSSSSC
T ss_pred hhhCCcCCCCC
Confidence 99999998764
No 17
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.9e-16 Score=105.00 Aligned_cols=75 Identities=23% Similarity=0.429 Sum_probs=63.1
Q ss_pred CeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCcee-c
Q psy327 38 DKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLP-R 116 (168)
Q Consensus 38 g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~-~ 116 (168)
+.+||+.||.++|+++|..|+++|.+ +.|.++++.||+ +||+|..|+++|....++. .
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~ 60 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG-------------------EVVSALGKTYHP--DCFVCAVCRLPFPPGDRVTFN 60 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS-------------------CCEEETTEEECT--TTSSCSSSCCCCCSSSCEEEE
T ss_pred CCCcchHHHHhHhCCcCccccCEecc-------------------ceEEECCceeCc--cCCccccCCCCCCCCCEEEeC
Confidence 56899999999999999999999973 258999999999 9999999999996555555 4
Q ss_pred CCeeeecccccCCCCCCC
Q psy327 117 AGVIFCSIACSKGEPPTP 134 (168)
Q Consensus 117 dg~~~C~~~C~~~~~~~~ 134 (168)
++.+||.. |+.+++++.
T Consensus 61 ~~~~~C~~-C~~~~~~~~ 77 (81)
T 1v6g_A 61 GKECMCQK-CSLPVSVSG 77 (81)
T ss_dssp TTEEEEHH-HHSCCSSCC
T ss_pred CCCEEChh-hhcccCCCC
Confidence 55679996 998776654
No 18
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.1e-16 Score=112.98 Aligned_cols=88 Identities=15% Similarity=0.275 Sum_probs=71.4
Q ss_pred ccCCCCCCCCCCccccccccccCC--CceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQ 84 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~ 84 (168)
+.|+++.||++||+|+.|+++|.. ..|+.+||++||+.||.++|+++|..|... . +
T Consensus 19 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~------~----------------~ 76 (114)
T 1j2o_A 19 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGG------D----------------V 76 (114)
T ss_dssp EECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSC------S----------------C
T ss_pred EEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCC------c----------------e
Confidence 678999999999999999999975 589999999999999999999999988621 1 1
Q ss_pred eeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327 85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT 133 (168)
Q Consensus 85 v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~ 133 (168)
|. |. ...|.|+.|++.|++|||.. ++.+..++
T Consensus 77 ~~--------------~~--~~~~~g~~f~~~~~~~~C~~-~~~~~~~~ 108 (114)
T 1j2o_A 77 MV--------------VG--EPTLMGGEFGDEDERLITRL-ENTQFDAA 108 (114)
T ss_dssp CC--------------SS--CSSTTSSBCCCSSSCCCEEE-ECTTCCCT
T ss_pred eE--------------cC--CccCCCCeeEEcCCEeecch-hhhccccc
Confidence 21 11 23468889999999999996 77665443
No 19
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=8.5e-16 Score=100.63 Aligned_cols=70 Identities=17% Similarity=0.336 Sum_probs=60.6
Q ss_pred CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeec-ccccCCCCCCCCCCCCCCCC
Q psy327 71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS-IACSKGEPPTPSDSSGPGLR 143 (168)
Q Consensus 71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~-~~C~~~~~~~~~~~~~~~~~ 143 (168)
|.|..|+++|. ++.|.++|+.||+ +||+|..|+++|.+..|+..||++||. . |+.+++++.|.+|+.++.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~~-cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHR--PCLKCEKCGKTLTSGGHAEHEGKPYCNHP-CYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEET--TTCBCTTTCCBCCTTTEEEETTEEEETTT-HHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccC--CCCCccccCccCCCCceECcCCeEeeCHH-HHHHHhCccCCCcCCcee
Confidence 35666666665 5679999999999 999999999999888999999999998 5 899999999999997664
No 20
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.7e-15 Score=103.18 Aligned_cols=71 Identities=18% Similarity=0.472 Sum_probs=61.3
Q ss_pred CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQ 145 (168)
Q Consensus 72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~ 145 (168)
.|..|+++|. +.+|.++|+.||+ +||+|..|+++|.+..|+..||++||.. ||.+++++.|..|+.+|.+.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWHD--TCFRCAKCLHPLANETFVAKDNKILCNK-CTTREDSPKCKGCFKAIVAG 79 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEET--TTCCCSSSCCCTTSSCCEEETTEEECHH-HHTTCCCCBCSSSCCBCCSS
T ss_pred cCcccCCcccCCceEEEECccChhh--cCCcccccCCCCCcCeeECcCCEEEChh-HhhhhcCCccccCCCccccC
Confidence 3444444443 3469999999999 9999999999999889999999999996 99999999999999999875
No 21
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.1e-15 Score=98.42 Aligned_cols=64 Identities=23% Similarity=0.525 Sum_probs=54.4
Q ss_pred CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327 71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~ 137 (168)
+.|..|.++|.++.|.++++.||+ +||+|..|+++|.+..|++.|+++||.. ||.+++++.|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHK--ECFVCTACRKQLSGQRFTARDDFAYCLN-CFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEET--TTSBCSSSCCBCTTSCCEESSSSEECHH-HHHHHTCCCCTT
T ss_pred CCCcccCCeeccceEEECccccCC--CCCccCCCCCcCCcCceEeeCCeEECHH-HHHHHhccccCC
Confidence 445555555555679999999999 9999999999999889999999999996 898888888763
No 22
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.2e-15 Score=98.02 Aligned_cols=64 Identities=30% Similarity=0.621 Sum_probs=54.4
Q ss_pred CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327 71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~ 137 (168)
+.|..|+++|.++.|.++++.||+ +||+|..|+++|.+..|++.|+++||.. ||.+++++.|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHA--DCFVCVTCSKKLAGQRFTAVEDQYYCVD-CYKNFVSGPSSG 69 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECT--TTTBCTTTCCBCTTSCEEECSSCEEEHH-HHHHHHTCSCCC
T ss_pred CCCcccCCEeCcceEEECcccccc--CcCEECCCCCCCCCCccEeECCEEECHH-HhHHHhcCCCCC
Confidence 445555555555679999999999 9999999999999889999999999995 999888888764
No 23
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=96.32 Aligned_cols=46 Identities=37% Similarity=1.001 Sum_probs=42.0
Q ss_pred CceeeCCceee--CCCCceecCCCCccCCCCCceecCCeeeecccccCCC
Q psy327 83 GQMSHEGQHWH--ATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGE 130 (168)
Q Consensus 83 ~~v~~~~~~~H--~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~ 130 (168)
+.|.++|+.|| + +||+|..|+++|.+..|++.||+|||+.+|+.++
T Consensus 17 ~~v~a~~~~wH~~~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 17 QRVTYNNFSWHAST--ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEEEETTEEEETTT--TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred eEEEECCCccCCCC--CCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 46999999999 9 9999999999999999999999999955799765
No 24
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.4e-15 Score=97.22 Aligned_cols=63 Identities=22% Similarity=0.567 Sum_probs=51.8
Q ss_pred CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327 72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~ 137 (168)
.|..|+++|. +.+|.++|+.||+ +||+|..|+++|.+..|+..||++||.. ||.+++++.|.+
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~~ 71 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHE--TCFICHRCQQPIGTKSFIPKDNQNFCVP-CYEKQHASGPSS 71 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEET--TTTCCSSSCCCCCSSSEEEETTEEEEHH-HHHHHTSSCCCC
T ss_pred CCccCCCcccCCceEEEECcCeecc--cCCcccccCCccCCCccCccCCeEECHH-HHhHHhCCCCCC
Confidence 3444444443 2369999999999 9999999999998889999999999996 999998888864
No 25
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.5e-15 Score=97.21 Aligned_cols=63 Identities=25% Similarity=0.566 Sum_probs=51.8
Q ss_pred CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327 72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~ 137 (168)
.|..|+++|. +.+|.++++.||+ +||+|..|+++|.+..|+..+|++||.. ||.+++++.|++
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~~ 71 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHE--HCFLCSGCEQPLGSRSFVPDKGAHYCVP-CYENKFASGPSS 71 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEET--TTCBCTTTCCBTTTSCEEEETTEEEEHH-HHHHHTSCCCCC
T ss_pred CCccCCCccccCccEEEECccccCc--ccCeECCCCCcCCCCccCCcCCeEECHH-HHHHHccCcCCC
Confidence 3444444443 3468999999999 9999999999998888999999999996 899998888764
No 26
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.4e-15 Score=96.73 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=50.0
Q ss_pred CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCC-CCCceecCCeeeecccccCCCCCCC
Q psy327 71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLL-GRPFLPRAGVIFCSIACSKGEPPTP 134 (168)
Q Consensus 71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~-~~~f~~~dg~~~C~~~C~~~~~~~~ 134 (168)
+.|..|+++|.++.|.++|+.||+ +||+|..|+++|. +..|+..++++||.. |+.++++..
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~--~CF~C~~C~~~L~~~~~f~~~~~~~yC~~-C~~~~~~~~ 67 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHP--SCALCVRCGQMFAEGEEMYLQGSSIWHPA-CRQAARTED 67 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCT--TTSCCSSSCCCCCSSCCCEEETTEEECTT-HHHHTSSSS
T ss_pred CCcccCCCEecCeeEEeCCCCCCC--CcCEeCCCCCCCCCCCeeEeeCCEEEChH-HChHhhccc
Confidence 344455555555579999999999 9999999999997 889999999999995 998776643
No 27
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.54 E-value=1.9e-15 Score=96.30 Aligned_cols=60 Identities=20% Similarity=0.444 Sum_probs=49.1
Q ss_pred CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327 71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT 133 (168)
Q Consensus 71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~ 133 (168)
+.|..|+++|.++.|.++|+.||+ +||+|..|+++|.+..|++.||++||.. ||.+++++
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~ 65 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHV--EHFVCAKCEKPFLGHRHYERKGLAYCET-HYNQLFGD 65 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEET--TTCBCTTTCCBCSSSCCEEETTEEECHH-HHHHHCSC
T ss_pred CCCcccCCEecceEEEECcccccc--CcCEECCCCCCCCCCceEeECCcEECHH-HHHHHhCC
Confidence 344455555555579999999999 9999999999999889999999999996 78766654
No 28
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.9e-15 Score=100.62 Aligned_cols=70 Identities=24% Similarity=0.553 Sum_probs=58.5
Q ss_pred hHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeeccc
Q psy327 46 HAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIA 125 (168)
Q Consensus 46 y~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~ 125 (168)
+...+.++|..|+++|. ++.|.++++.||+ +||+|..|+++|.+..|++.+|++||..
T Consensus 20 ~~~~~~~~C~~C~~~I~-------------------~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~- 77 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIR-------------------GPFLVALGKSWHP--EEFNCAHCKNTMAYIGFVEEKGALYCEL- 77 (90)
T ss_dssp CTTTCCCBBSSSCCBCC-------------------SCEEEETTEEECT--TTCBCSSSCCBCSSSCBEESSSCEECHH-
T ss_pred CCCCCCCCCccCCCEec-------------------ceEEEECCccccc--cCCccCCCCCCCCCCEeEeECCEEECHH-
Confidence 44455666666666664 3468999999999 9999999999999889999999999996
Q ss_pred ccCCCCCCCCCC
Q psy327 126 CSKGEPPTPSDS 137 (168)
Q Consensus 126 C~~~~~~~~~~~ 137 (168)
||.++++++|.+
T Consensus 78 cy~~~f~~~c~s 89 (90)
T 2dar_A 78 CYEKFFASGPSS 89 (90)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHHHHcCCCCCC
Confidence 999999988864
No 29
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7.5e-15 Score=95.03 Aligned_cols=50 Identities=42% Similarity=0.848 Sum_probs=45.4
Q ss_pred CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327 83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS 135 (168)
Q Consensus 83 ~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~ 135 (168)
.+|.++++.||+ +||+|..|+++|.+..|+..||++||.. |+.+++.+.+
T Consensus 22 ~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-c~~~~~~p~~ 71 (72)
T 1x4l_A 22 KYISFEERQWHN--DCFNCKKCSLSLVGRGFLTERDDILCPD-CGKDISGPSS 71 (72)
T ss_dssp SCEECSSCEECT--TTCBCSSSCCBCTTSCCEECSSSEECHH-HHHTCCCSSC
T ss_pred ceEEECCcccCc--ccCEeccCCCcCCCCccEeECCEEEChh-HcCcccCCCC
Confidence 468999999999 9999999999999999999999999995 9988887654
No 30
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.53 E-value=3.2e-15 Score=106.74 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=61.2
Q ss_pred CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQ 145 (168)
Q Consensus 72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~ 145 (168)
.|..|+++|. +++|.++|+.||+ +||+|..|+++|.+..|+..||++||.. ||.+++++.|..|+.+|.+.
T Consensus 5 ~C~~C~~~I~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-cy~~~~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 5 RCAGCDELIFSNEYTQAENQNWHL--KHFCCFDCDSILAGEIYVMVNDKPVCKP-CYVKNHAVVCQGCHNAIDPE 76 (126)
T ss_dssp BBTTTSSBCCSSCEEEETTEEECG--GGSBCTTTCCBCTTSEEEEETTEEEEHH-HHHHHSCCBCTTTCSBCCTT
T ss_pred CCccCCCEeCCceEEeeCCCCccC--CCCCcCCCCCCCCcCEEEeECCEEechH-HhCcCcCccCcccCCcCCcC
Confidence 3444444444 2468999999999 9999999999999889999999999996 99999999999999999974
No 31
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.52 E-value=4.5e-15 Score=98.30 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=49.1
Q ss_pred CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL 142 (168)
Q Consensus 72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~ 142 (168)
.|..|.++|. ++.|.++++.||+ +||+|..|+++|.+..|+..|+++||.. |+.+++++.|.+|+.+.
T Consensus 9 ~C~~C~~~I~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 9 KCGACGRTVYHAEEVQCDGRSFHR--CCFLCMVCRKNLDSTTVAIHDAEVYCKS-CYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp BCSSSCCBCSSTTEEEETTEEEES--SSEECSSSCCEECSSCCEEETTEEECSH-HHHHHCC----------
T ss_pred cCcCcCccccCceeEEeCCccccc--ccCccCCCCCCCCCCCeEeeCCEEECHH-HHHHHhCCcccccCCcc
Confidence 3444444442 4468999999999 9999999999998888999999999996 99999999999998653
No 32
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=6.6e-15 Score=94.80 Aligned_cols=63 Identities=21% Similarity=0.405 Sum_probs=52.7
Q ss_pred CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327 71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
+.|..|++.|.++.|.++++.||+ +||+|..|+++|.+..|+..||++||.. ||.+++.+...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-c~~~~~~~~~~ 68 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHP--ECFRCDLCQEVLADIGFVKNAGRHLCRP-CHNREKASGPS 68 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECT--TTSBCSSSCCBCSSSCCEEETTEEECHH-HHHHHHCCCSC
T ss_pred CcCccCCCEecceEEEECcccccc--cCCEeCCCCCcCCCCccEeECCeEECHH-HhhhhcCCCCC
Confidence 456666666666679999999999 9999999999998888999999999996 88877766543
No 33
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.1e-14 Score=96.55 Aligned_cols=64 Identities=23% Similarity=0.505 Sum_probs=54.8
Q ss_pred cCCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327 70 RDLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137 (168)
Q Consensus 70 ~~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~ 137 (168)
.+.|..|.++|. ++.|.++++.||+ +||+|..|+++|.+ .|++.||+|||.. ||.+++.+.|.+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~--~CF~C~~C~~~L~~-~~~~~~g~~yC~~-~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHV--SCFKCQTCSVILTG-EYISKDGVPYCES-DYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECT--TTCBCSSSCCBCSS-CCEEETTEEECTT-HHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCccccc--ccCCcCcCCCCcCC-CeEEECCEEECHH-HHHHHcCCCCCC
Confidence 346777777775 5679999999999 99999999999986 5999999999996 898999988864
No 34
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.2e-14 Score=95.15 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=52.6
Q ss_pred CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeec-ccccCCCCCCCCCC
Q psy327 71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS-IACSKGEPPTPSDS 137 (168)
Q Consensus 71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~-~~C~~~~~~~~~~~ 137 (168)
+.|..|.++|. ++.|.++++.||+ +||+|..|+++|.+..|+..|+++||. . ||.+++++.|.+
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~~-cy~~~f~~kc~g 75 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHK--FCLKCERCSKTLTPGGHAEHDGKPFCHKP-CYATLFGSGPSS 75 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEET--TTCBCSSSCCBCCTTSCEEETTEEECTTT-HHHHHSCSSCSC
T ss_pred CCCcCCCCEeECCeEEEECCeEeeC--CCCCCCCCCCccCCCceEeECCEEecchH-HHHHhcccccCC
Confidence 34444444444 4568999999999 999999999999988999999999999 6 888888887753
No 35
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=4.4e-15 Score=105.83 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCC
Q psy327 71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQ 145 (168)
Q Consensus 71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~ 145 (168)
+.|..|+++|.+. +|.++++.||+ +||+|..|+.+|. +..|+..||++||.. ||.+++++ .|.+|+.+|.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECH--HHHCCSSSCCCTTTSEECCEEETTEEECHH-HHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcccCCEeCCcEEEEECCceeHh--hCCCcCCCCCcccccCCeEEEECCeeecHH-HHHHHcCCCCccccCCCCcCch
Confidence 4455555555444 58999999999 9999999999996 578999999999996 89888888 999999999863
No 36
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-14 Score=110.40 Aligned_cols=87 Identities=24% Similarity=0.507 Sum_probs=68.6
Q ss_pred CCeeccccchH---hhhccccccCcccccccCCccccCCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCCCCC
Q psy327 37 GDKLYCGRHHA---ETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLLGRP 112 (168)
Q Consensus 37 ~g~~yC~~cy~---~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~~~~ 112 (168)
++..||..++. ....++|..|+++|. +. +|.++|+.||+ +||+|..|+++|.+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~-------------------~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~ 101 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHIL-------------------DRFILKALDRHWHS--KCLKCSDCHVPLAERC 101 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCC-------------------CSEEEEETTEEECS--STTSCTTTCCCCSSCC
T ss_pred ccccccccccccCCCCCCCcCccCCCCcc-------------------CceeEEecCCeEcc--ccCccCCCCCccCCCc
Confidence 45567776654 222355666666554 33 57899999999 9999999999998776
Q ss_pred ceecCCeeeecccccCCCCCCCCCCCCCCCCCCC
Q psy327 113 FLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQR 146 (168)
Q Consensus 113 f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~ 146 (168)
| ..||++||.. ||.+++++.|..|+.+|.+..
T Consensus 102 f-~~~g~~yC~~-~y~~~f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 102 F-SRGESVYCKD-DFFKRFGTKCAACQLGIPPTQ 133 (182)
T ss_dssp E-EETTEEECHH-HHHHTTSCCCTTTCCCCCSSC
T ss_pred e-eECCEeeecC-ccccccccccccCCCccCCCc
Confidence 5 7899999996 999999999999999998753
No 37
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2.3e-14 Score=94.70 Aligned_cols=63 Identities=14% Similarity=0.336 Sum_probs=52.1
Q ss_pred cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327 70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
.+.|..|++.|.++.|.++|+.||+ +||+|..|+++|.+..| ..||++||.. ||.+++++.+.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~f-~~~g~~yC~~-cy~~~f~p~~s 77 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHP--DHFNCANCGKELTADAR-ELKGELYCLP-CHDKMGVSGPS 77 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCT--TTSBCSSSCCBCCTTCE-EETTEEECHH-HHHTTSCCSSC
T ss_pred CCCCccCCCEecceEEEECcceeCC--CCCEeCCCCCccCCCCE-eECCEEeCHH-HHHHhCCCCCC
Confidence 4556666666666679999999999 99999999999987754 8899999996 88888877654
No 38
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.1e-14 Score=95.33 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=52.2
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccc-cchHhhhccccccCccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~C~~C~~~I~ 62 (168)
+.|+|+.||++||+|..|+++|.+..|+.+||++||. .||.++|+++|.+|++.+.
T Consensus 16 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp EEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred EEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5788999999999999999999988999999999999 6999999999999997664
No 39
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.45 E-value=2.7e-14 Score=102.52 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCC
Q psy327 71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQ 145 (168)
Q Consensus 71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~ 145 (168)
+.|..|+++|.++ +|.++|+.||+ +||+|..|+.+|. +..|+..||++||.. ||.+++++ .|..|+.+|.+.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHE--DCLSCDLCGCRLGEVGRRLYYKLGRKLCRR-DYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEET--TTCBCTTTCCBCSSTTCCEEEETTEEECHH-HHHHHHCCCEECTTTCCEECTT
T ss_pred ccCcCCCCEeCCcEEEEECCCcccH--HHcccCcCCCccccCCCeEEEECCEEeecC-chhhhCCCccChhhcCCccCcc
Confidence 3455566665555 58999999999 9999999999995 578999999999996 88888888 899999999874
Q ss_pred C
Q psy327 146 R 146 (168)
Q Consensus 146 ~ 146 (168)
.
T Consensus 80 e 80 (131)
T 2xjy_A 80 E 80 (131)
T ss_dssp S
T ss_pred c
Confidence 3
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=3.4e-14 Score=91.83 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=47.4
Q ss_pred CCcccccCCCCC--CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327 71 DLNINYFSSLPA--GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP 132 (168)
Q Consensus 71 ~~C~~C~~~i~~--~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~ 132 (168)
+.|..|.++|.. ..|.++++.||+ +||+|..|+++|.+..|+..|+++||.. ||.+++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~~~ 66 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHV--GCFVCSTCRAQLRGQHFYAVERRAYCEG-CYVATLE 66 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECT--TTCBCSSSCCBCTTSCEEESSSCEEEHH-HHHHHHH
T ss_pred CCCccCCCccCCCceEEEECCCeEcc--cCCcccccCCcCCcCcCEeeCCeEECHH-HHHHHHc
Confidence 344444444442 368999999999 9999999999999889999999999996 8876653
No 41
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.5e-14 Score=95.15 Aligned_cols=63 Identities=22% Similarity=0.472 Sum_probs=53.9
Q ss_pred cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327 70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS 135 (168)
Q Consensus 70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~ 135 (168)
.+.|..|.+.|.++.|.++++.||+ +||+|..|++.|.+..|+..|+++||.. ||.+++.+++
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~p~~ 87 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHP--ECFVCADCNLNLKQKGYFFVEGELYCET-HARARTSGPS 87 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECT--TTCCCSSSCCCTTTSCCEEETTEEECHH-HHHHHSSSCC
T ss_pred CCCcccCCCEecccEEEECCceECc--cCCEecCCCCCCCCCCeEeECCEEECHH-HHHHHhCCCC
Confidence 4567777777767789999999999 9999999999998888999999999996 8887777654
No 42
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.44 E-value=1.6e-14 Score=95.63 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=43.1
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVR 61 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I 61 (168)
+.++++.||++||+|..|+++|....|+.+|+++||+.||.++|+++|.+|++..
T Consensus 23 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 5778999999999999999999888899999999999999999999999999765
No 43
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=3.9e-14 Score=92.66 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=49.3
Q ss_pred CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327 72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136 (168)
Q Consensus 72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~ 136 (168)
.|..|+++|. +.+|.++|+.||+ +||+|..|+++|.+..|+..||++||.. ||.+++++.|.
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~~C~ 76 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHE--QCFVCAQCFQQFPEGLFYEFEGRKYCEH-DFQMLFAPCWI 76 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECT--TTCCCTTTCCCCGGGCSEEETTEEECHH-HHHHHCCCC--
T ss_pred CchhcCCccCCCceEEEeCccEecc--ccCeECCCCCCCCCCCeEeECCeEeCHH-HHHHHhhcccC
Confidence 4444444443 2357899999999 9999999999998778999999999996 88888888764
No 44
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.3e-14 Score=95.65 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=53.1
Q ss_pred cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327 70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS 135 (168)
Q Consensus 70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~ 135 (168)
.+.|..|.+.|.++.|.++++.||+ +||+|..|+++|.+..|+..|+++||.. ||.+++.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~~~p~g 77 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHP--ECYVCTDCGTNLKQKGHFFVEDQIYCEK-HARERVSGPS 77 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECT--TTTSCSSSCCCHHHHCCEESSSCEECHH-HHHHHHSSCC
T ss_pred CCccccCCCCccCcEEEECcceeCc--CcCeeCCCCCCCCCCCeEeECCEEECHH-HHHHHhCCCC
Confidence 3466667766666789999999999 9999999999998888999999999996 8877766553
No 45
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.42 E-value=2.6e-14 Score=101.90 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=60.8
Q ss_pred hHhhhcc--ccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccC-CCCCceecCCeeee
Q psy327 46 HAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFC 122 (168)
Q Consensus 46 y~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C 122 (168)
|.++|+. +|..|+++|.+. +.+|.++++.||+ +||+|..|+++| .+..|+..++++||
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~-----------------e~~~~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~g~~yC 61 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAY-----------------EMTMRVKDKVYHL--ECFKCAACQKHFSVGDRYLLINSDIVC 61 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTT-----------------CCCCCCSSCCCCT--TTCBCTTTCCBCCTTCEEEECSSSEEE
T ss_pred ChhhhCCCCcccCCCCeecCC-----------------ceEEEECCccccc--ccCccccCCCCCCCCCcEEeeCCEEEc
Confidence 3455666 777777777632 1257899999999 999999999999 67789999999999
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q psy327 123 SIACSKGEPPTPSDSSGPGLR 143 (168)
Q Consensus 123 ~~~C~~~~~~~~~~~~~~~~~ 143 (168)
.. ||.+++...+..++.++.
T Consensus 62 ~~-cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 62 EQ-DIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp GG-GHHHHHHHHTCCCCCCSC
T ss_pred HH-HhHHHhccccCCCCCCCc
Confidence 96 888887777766555543
No 46
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.3e-13 Score=93.25 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=54.8
Q ss_pred CcccccCCCCC-CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLPA-GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLR 143 (168)
Q Consensus 72 ~C~~C~~~i~~-~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~ 143 (168)
.|..|++.|.+ +.|.++++.||+ +||+|..|+++|.+..|+..|+++||.. ||.+++.+.|. ...++.
T Consensus 17 ~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~kc~-~~~g~g 85 (91)
T 2d8y_A 17 TCVECQKTVYPMERLLANQQVFHI--SCFRCSYCNNKLSLGTYASLHGRIYCKP-HFNQLFKSKGN-YDEGFG 85 (91)
T ss_dssp BCTTTCCBCCTTSEEECSSSEEET--TTCBCTTTCCBCCTTTCCCSSSCCCCHH-HHHHHSCCCSC-CCSCCC
T ss_pred cCccCCCccCCceeEEECCCEECC--CCCeeCCCCCCCCCCCcEeECCEEECHH-HHHHHhCCCcC-ccCCcC
Confidence 45555555542 468999999999 9999999999998888999999999996 89999999887 344443
No 47
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=2.3e-13 Score=90.37 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=50.6
Q ss_pred CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCce--ecCCeeeecccccCCCCCCCC
Q psy327 71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFL--PRAGVIFCSIACSKGEPPTPS 135 (168)
Q Consensus 71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~--~~dg~~~C~~~C~~~~~~~~~ 135 (168)
+.|..|++.|. .+.|.++++.||+ +||+|..|+++|.+..|+ +.||++||+. ||.+++....
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-~y~~~~~~~~ 80 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHR--SCFRCHTCEATLWPGGYEQHPGDGHFYCLQ-HLPQTDSGPS 80 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBT--TTCBCSSSCCBCCTTSEECCTTTCCCEETT-TCCCCCCCCC
T ss_pred CCCcccCCCcccceEEEECCCeeCC--CcCEEcCCCCCcCCCceeEeCcCCEEEChH-HHHhhhcCCC
Confidence 45666666664 4568899999999 999999999999888887 4799999996 7888776654
No 48
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1e-13 Score=89.52 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=47.2
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|+.
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp ECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred EEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 57899999999999999999999889999999999999999999999863
No 49
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=6e-14 Score=90.18 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=47.2
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|..
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 20 VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 67899999999999999999999889999999999999999999999863
No 50
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=3.3e-14 Score=93.05 Aligned_cols=53 Identities=19% Similarity=0.451 Sum_probs=49.5
Q ss_pred eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCc
Q psy327 6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACD 58 (168)
Q Consensus 6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~ 58 (168)
.+.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|..++
T Consensus 23 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 23 FICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred eEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 36789999999999999999999988999999999999999999999998875
No 51
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=6.5e-14 Score=89.82 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=47.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.++++.||++||+|..|+++|.+..|+..|+++||+.||.++|+++|.+
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 20 ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 46889999999999999999999889999999999999999999999974
No 52
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=8.4e-14 Score=98.02 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCCCCCCCC
Q psy327 71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPTPSDSSG 139 (168)
Q Consensus 71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~ 139 (168)
+.|..|+++|.+. +|.++++.||+ +||+|+.|+++|. |..|+..||+|||.. ||.+++++.|..|.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~-~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHE--DCLSCDLCGCRLGEVGRRLYYKLGRKLCRR-DYLRLGGSGGHMGS 72 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECT--TTCCCSSSCSCCCCSSSCCCCBTTBCCCHH-HHHHHHTSCCSSCB
T ss_pred CCCcCCCCeeCCcEEEEECchhHHH--hcCcccccCCchhcCCCeeEEECCeeechH-HHHHHhCcccCcCC
Confidence 3466666666555 69999999999 9999999999996 468999999999996 89899999877654
No 53
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.1e-13 Score=89.33 Aligned_cols=50 Identities=18% Similarity=0.423 Sum_probs=47.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp EEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred EEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 56799999999999999999999889999999999999999999999863
No 54
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.3e-13 Score=91.23 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=45.6
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+ .|+.+|+++||+.||.++|+++|..
T Consensus 31 v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 31 LLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp EEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred EEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 578999999999999999999985 6999999999999999999999974
No 55
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=1.1e-13 Score=93.35 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=46.9
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 40 v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 40 LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp EEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred EEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 46899999999999999999999889999999999999999999999963
No 56
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.36 E-value=2.5e-13 Score=86.35 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=44.3
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR 53 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 53 (168)
+.|+|+.||++||+|..|+++|.+..|+..||++||+.||.++|+++
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 20 VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp ECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred EEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 57899999999999999999999889999999999999999998864
No 57
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-13 Score=89.58 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=47.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+
T Consensus 32 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 32 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred EEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 56789999999999999999999889999999999999999999999864
No 58
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=1.7e-13 Score=89.58 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=46.7
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccc-cchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||+ +||.++|+++|.+
T Consensus 25 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp EEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred EEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 5688999999999999999999988899999999999 7999999999864
No 59
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.36 E-value=2.6e-13 Score=101.65 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=58.8
Q ss_pred CcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQR 146 (168)
Q Consensus 72 ~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~ 146 (168)
.|..|+++|.++ +|.++|+.||+ +||+|..|+++|.+..| ..||++||.. ||.+++++.|.+|+.+|.+..
T Consensus 8 ~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f-~~~g~~yC~~-~y~~~f~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 8 MCAGCDQHILDRFILKALDRHWHS--KCLKCSDCHVPLAERCF-SRGESVYCKD-DFFKRFGTKCAACQLGIPPTQ 79 (169)
T ss_dssp BBSSSSSBCCSSSCEECSSCEECT--TTSBCTTTCCBCCSCCE-ESSSCEECHH-HHHHHHSCBCTTTCCBCCTTS
T ss_pred ccccCCCccCCcEEEEECCcEEcc--ccCccCCCCCcCCCCCc-ccCCeeeecc-cccccccccccccccccCCCc
Confidence 444444444443 58899999999 99999999999987765 7899999996 999999999999999998753
No 60
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=1.6e-13 Score=89.73 Aligned_cols=49 Identities=16% Similarity=0.468 Sum_probs=44.6
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 55 (168)
+.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.
T Consensus 28 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp EEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred EEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 3588999999999999999999888899999999999999999999986
No 61
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.35 E-value=2.4e-13 Score=87.38 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=50.2
Q ss_pred hhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccC
Q psy327 49 TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128 (168)
Q Consensus 49 ~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~ 128 (168)
.+.++|..|+++|.+. +.+|.++|+.||+ +||+|..|+++|.+..|+..||++||.. |+.
T Consensus 9 ~~~~~C~~C~~~i~~~-----------------e~~~~~~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~ 68 (72)
T 3f6q_B 9 SASATCERCKGGFAPA-----------------EKIVNSNGELYHE--QCFVCAQCFQQFPEGLFYEFEGRKYCEH-DFQ 68 (72)
T ss_dssp CTTCBCTTTCCBCCTT-----------------CEEEEETTEEEET--TTSSCTTTCCCCGGGCCEEETTEEECHH-HHH
T ss_pred cCCccchhcCccccCC-----------------ceEEEeCcCeeCc--CCCcccCCCCCCCCCCeEeECCeEeCHH-HHH
Confidence 4556777777777632 1147899999999 9999999999997778999999999996 776
Q ss_pred CCC
Q psy327 129 GEP 131 (168)
Q Consensus 129 ~~~ 131 (168)
+++
T Consensus 69 ~lf 71 (72)
T 3f6q_B 69 MLF 71 (72)
T ss_dssp HHT
T ss_pred Hhh
Confidence 554
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=2.8e-13 Score=87.52 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=45.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC 54 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C 54 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|++
T Consensus 24 ~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp EECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred EEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 578999999999999999999999899999999999999999998865
No 63
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=4e-13 Score=88.43 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=47.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|+.
T Consensus 30 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 30 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp EESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred EEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 57899999999999999999998889999999999999999999999863
No 64
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=5.8e-13 Score=89.62 Aligned_cols=49 Identities=31% Similarity=0.600 Sum_probs=46.0
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 55 (168)
+.|+++.||++||+|..|+++|.+..|+..|+++||+.||.++|++++.
T Consensus 40 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 40 VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5789999999999999999999888899999999999999999999875
No 65
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=3.1e-13 Score=88.99 Aligned_cols=50 Identities=22% Similarity=0.515 Sum_probs=46.9
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..
T Consensus 30 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 30 LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp EEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred EEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 57889999999999999999998888999999999999999999999964
No 66
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.32 E-value=4.9e-13 Score=95.48 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=50.7
Q ss_pred cCCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCC
Q psy327 70 RDLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEP 131 (168)
Q Consensus 70 ~~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~ 131 (168)
.+.|..|+++|.+. +|.++++.||+ +||+|..|+++|. +..|+..||++||.. ||.+++
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~--~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~-cy~~~F 122 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLF 122 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEET--TTSBCTTTCCBGGGTTCCCBCSSSCCBCHH-HHHHHC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcc--cccCcCcCCCcccccCCceEEECCEEeCHH-Hhhhhc
Confidence 56788888888766 49999999999 9999999999995 678999999999996 776554
No 67
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.30 E-value=2.4e-13 Score=103.54 Aligned_cols=72 Identities=15% Similarity=0.323 Sum_probs=59.3
Q ss_pred CcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCCC
Q psy327 72 LNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQR 146 (168)
Q Consensus 72 ~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~~ 146 (168)
.|..|+++|.+. +|.++++.||+ +||+|..|+++|. +..|+..||++||.. ||.+++.+ .|..|+.+|.+..
T Consensus 7 ~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~-cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 7 RCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp BBTTTCCBCCCSEEEEETTEEECG--GGCBCTTTCCBHHHHCSEEEEETTEEECHH-HHHHHHSCCEECTTTCCEECTTS
T ss_pred cCccCCCEeCCceeEEecCcEecc--cCcccCCCCcccccCCceEEEeCCcccccc-ccccccccCCccccCCCccccCc
Confidence 444455444444 58999999999 9999999999996 578999999999996 88888877 7999999998643
No 68
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=4.5e-13 Score=88.53 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEE-CCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.+..|+.. ||++||+.||.++|+++|.+
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 30 LRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp EEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred EEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 568899999999999999999998888776 79999999999999999964
No 69
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=9.9e-13 Score=86.92 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=46.3
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 55 (168)
+.|+++.||++||+|..|+++|....|+.+++++||+.||.++|++++.
T Consensus 32 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 32 VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp EECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred EEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 6789999999999999999999988999999999999999999998875
No 70
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=3.5e-13 Score=88.78 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=45.8
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 55 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|++++.
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 30 VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp EECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred EEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5789999999999999999999887899999999999999999998864
No 71
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=9.8e-13 Score=84.47 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=44.6
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC 54 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C 54 (168)
+.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++.
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp EEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred EEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 578899999999999999999998889999999999999999988754
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.4e-12 Score=84.88 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=43.5
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 55 (168)
+.|+++.||++||+|..|+++|.+. ++.+||++||..||.++|+|++.
T Consensus 30 v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 30 LIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred EEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 5789999999999999999999876 46999999999999999988654
No 73
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=8.9e-13 Score=89.07 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=47.2
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|....|+.+|+++||+.||.++|+++|..
T Consensus 31 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp EECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred EEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence 57899999999999999999998888999999999999999999999983
No 74
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.25 E-value=2.2e-12 Score=83.17 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=44.3
Q ss_pred eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327 6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
.+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|. +|..
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~ 70 (72)
T 1x61_A 21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPS 70 (72)
T ss_dssp CEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSS
T ss_pred EEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCC
Confidence 3578999999999999999999988889999999999999999874 4443
No 75
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.24 E-value=2.4e-12 Score=98.15 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=55.6
Q ss_pred CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCC
Q psy327 72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPG 141 (168)
Q Consensus 72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~ 141 (168)
.|..|+++|. ++.|.++|+.||+ +||+|..|+++|.+..|+..||++||.. ||.+++++.|.+|+.+
T Consensus 9 ~C~~C~~~I~~~~~v~a~g~~wH~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 9 KCGVCQKAVYFAEEVQCEGSSFHK--SCFLCMVCKKNLDSTTVAVHGDEIYCKS-CYGKKYGPKGKGKGMG 76 (192)
T ss_dssp ECTTTCCEECSSCCEEETTEEECT--TTCBCTTTCCBCCSSSEEEETTEEEEHH-HHHHHHSCCCCCCCCC
T ss_pred cCccCCCeecceeEEEeCCceecC--CCCcCcccCCcCCCCeeEecCCEeeChh-hhHhhcCccccccccc
Confidence 3444555443 4468899999999 9999999999998888999999999996 9999999988877643
No 76
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=7.1e-12 Score=81.34 Aligned_cols=46 Identities=13% Similarity=0.422 Sum_probs=42.2
Q ss_pred ccCCCCCCCCCCccccccccccC-CCceEEECCeeccccchHhhhcc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLV-DLIYFYRGDKLYCGRHHAETLKP 52 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~ 52 (168)
+.|+++.||++||+|..|+++|. +..|+..++++||..||.+++..
T Consensus 20 v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 20 LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp BCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred EEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 57999999999999999999998 77899999999999999988663
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.20 E-value=1e-11 Score=88.42 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=50.7
Q ss_pred ccCCCCCCCCCCcccccccccc-CCCceEEECCeeccccchHhhhccccccCccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELL-VDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 62 (168)
+.|+++.||++||+|..|+++| .+..|+..++++||..||.++++++|..++..+.
T Consensus 25 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred EEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 4789999999999999999999 5567999999999999999999999988876654
No 78
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=1.3e-11 Score=81.32 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=44.0
Q ss_pred ccCCCCCCCCCCccccccccccCC-CceE-EECCeeccccchHhhhcccccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVD-LIYF-YRGDKLYCGRHHAETLKPRCSA 56 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~-~~~~-~~~g~~yC~~cy~~~~~~~C~~ 56 (168)
+.|+++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.+.+
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 30 MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp BCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred EEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 578999999999999999999964 5666 4899999999999999987753
No 79
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.15 E-value=6.1e-12 Score=80.71 Aligned_cols=45 Identities=16% Similarity=0.490 Sum_probs=41.6
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK 51 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 51 (168)
+.++++.||++||+|..|+++|....|+..||++||+.||.++|+
T Consensus 28 ~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp EEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred EEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 358899999999999999999988889999999999999998874
No 80
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.12 E-value=7e-12 Score=83.15 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=42.5
Q ss_pred ccCCCCCCCCCCccccccccccCCCceE--EECCeeccccchHhhhcccc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYF--YRGDKLYCGRHHAETLKPRC 54 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~~~~~C 54 (168)
+.|+++.||++||+|..|+++|....|+ .+||++||+.||.++|...+
T Consensus 31 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred EEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 5689999999999999999999988887 47999999999998876543
No 81
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2e-11 Score=79.63 Aligned_cols=42 Identities=24% Similarity=0.647 Sum_probs=39.5
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHh
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 48 (168)
+.|+++.||++||+|..|+++|.+..|+..++++||+.||.+
T Consensus 35 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp EEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred EEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 578899999999999999999998899999999999999975
No 82
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.06 E-value=3.2e-11 Score=76.42 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=40.1
Q ss_pred eccCCCCCCC--CCCccccccccccCCCceEEECCeecc-ccchHhh
Q psy327 6 SRAGPNSCWH--PGCFTCSVCNELLVDLIYFYRGDKLYC-GRHHAET 49 (168)
Q Consensus 6 ~~~a~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~ 49 (168)
.+.|+|+.|| ++||+|..|+++|.+..|+.+||++|| .+||.++
T Consensus 18 ~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 18 RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred EEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 3678999999 999999999999999899999999999 7888754
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-11 Score=87.66 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=41.3
Q ss_pred ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhc
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLK 51 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~ 51 (168)
+.|+++.||++||+|..|+++|. +..|+.+||++||+.||.++|+
T Consensus 77 v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 77 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp EEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred EEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 57899999999999999999996 4689999999999999999875
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=1.2e-09 Score=71.89 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=36.7
Q ss_pred ccCCCCCCCCCCccccccccccCCCceEEECC-eeccccchHhhh
Q psy327 7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGD-KLYCGRHHAETL 50 (168)
Q Consensus 7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g-~~yC~~cy~~~~ 50 (168)
+.|+++.||++||+|..|+++|....++..++ .+||..||.+++
T Consensus 30 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 30 VSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp EEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred EEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 57899999999999999999998666666555 579999987654
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.30 E-value=5.9e-05 Score=40.47 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327 71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF 99 (168)
Q Consensus 71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF 99 (168)
+.|+.|++.|+ ++.|.+.|+.||. .||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk--~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHK--ACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCG--GGC
T ss_pred CcCCccCCEEecceeEEECCeEecc--cCC
Confidence 45777777775 4678999999998 887
No 86
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=83.44 E-value=0.6 Score=27.96 Aligned_cols=34 Identities=26% Similarity=0.630 Sum_probs=28.3
Q ss_pred ecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327 100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT 133 (168)
Q Consensus 100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~ 133 (168)
-|..|+..+....-+..||+.||..+|....+..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH~~~ 42 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGHTGG 42 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTSCSS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccCCCC
Confidence 4788999998888999999999977798876543
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.09 E-value=0.37 Score=32.87 Aligned_cols=47 Identities=19% Similarity=0.559 Sum_probs=32.3
Q ss_pred CCccccccccccCCC------ceEEECCeeccccchHhhhc--cccccCcccccc
Q psy327 17 GCFTCSVCNELLVDL------IYFYRGDKLYCGRHHAETLK--PRCSACDEVRVQ 63 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~------~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~~ 63 (168)
+=+.|.+|...+.+. .....=|..||..|..+.+. ..|..|.+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 347889998777432 13456688999999876543 568788877753
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=68.14 E-value=4.9 Score=24.59 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhhc---cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
++-|.|..|...+.+ .....-|..||..|..+.+. ..|..|.+++.
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 456899999988855 44567899999999876653 45777776664
No 89
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.40 E-value=3.7 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.493 Sum_probs=33.7
Q ss_pred CccccccccccCCCceEE-ECCeeccccchHhhhccccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~~~C~~C~~~I~ 62 (168)
=+.|.+|...+... ... .=|..||..|....+...|..|..++.
T Consensus 22 ~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 47889998877553 333 678899999988776678888888774
No 90
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.06 E-value=5.5 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=23.8
Q ss_pred ccccccccccCCCceEEECCeeccccchHhh-hccccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAET-LKPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-~~~~C~~C~~~I~ 62 (168)
..|..|+..|.. .++..+|..|.... ....|..|++++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 578888887743 35556677764421 1256666776665
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.71 E-value=3.5 Score=25.01 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=33.1
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhh--ccccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
.+-+.|.+|...+.+......=|..||..|..+.+ ...|..|.+.|.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 34578999988886532223678889999987654 367888887775
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.53 E-value=9.1 Score=24.58 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=8.0
Q ss_pred ccccccccccCC
Q psy327 19 FTCSVCNELLVD 30 (168)
Q Consensus 19 f~C~~C~~~L~~ 30 (168)
..|..|+..|..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 357778777743
No 93
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.61 E-value=3.8 Score=24.68 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc-----cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK-----PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~ 62 (168)
+=+.|.+|...+.+ .....=|..||..|..+.+. ..|..|.++|.
T Consensus 19 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 45789999888765 33446788899999877653 25666666554
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.33 E-value=3.7 Score=24.39 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=32.4
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhh---ccccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 62 (168)
.+=+.|.+|...+.+. ....=|..||..|..+.+ ...|..|..+|.
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3457899998887543 235678889999988765 246777777664
No 95
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.86 E-value=9.1 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhhc--cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
.+-+.|.+|...+... ....=|..||..|..+.+. ..|..|...|.
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4557899998887553 3446788899999876433 56777777765
No 96
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.40 E-value=6.7 Score=24.23 Aligned_cols=45 Identities=22% Similarity=0.560 Sum_probs=32.2
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc--cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
.=+.|.+|...+.. .....=|..||..|..+.+. ..|..|..++.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45788999888755 33455688999999876543 56888877764
No 97
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.28 E-value=8.7 Score=23.51 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhh--------ccccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--------KPRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--------~~~C~~C~~~I~ 62 (168)
.=+.|.+|...+... ....=|..||..|..+.+ ...|..|...+.
T Consensus 18 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 457899998887553 334567889999987643 345666666654
No 98
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=53.14 E-value=5.2 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=31.4
Q ss_pred CccccccccccCCCceEE-ECCeeccccchHhhhc--cccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
=+.|.+|...+.+ .... .=|..||..|..+.+. ..|..|...+.
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4689999888865 3333 5788899999876543 56777777765
No 99
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=52.22 E-value=14 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=35.3
Q ss_pred CCCCccccccccccCCCceEEECCeeccccchHhhh--ccccccCccccc
Q psy327 15 HPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 15 H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
-+.-|.|.+|...+.+ ......|..||..|-.+.+ ...|..|++++.
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3678999999988865 5566799999999966554 356777777664
No 100
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=52.10 E-value=10 Score=22.33 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred ccccccccccCCCceEEECCeeccccchHhhh--ccccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
..|.+|...+.+......=|..||..|..+.+ ...|..|...+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 46788887775533344567889999976543 356777777765
No 101
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=51.60 E-value=9.8 Score=26.23 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=30.6
Q ss_pred ccccccccccCCCceEEECCeeccccchHhhh--ccccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
+.|.+|...+.. .....=|..||..|..+.+ ...|..|..+|.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 578999888754 3455678899999976543 356777777764
No 102
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=50.89 E-value=7.3 Score=24.63 Aligned_cols=44 Identities=18% Similarity=0.526 Sum_probs=32.1
Q ss_pred CCccccccccccCCCceEEE-CCeeccccchHhhhc----cccccCcccc
Q psy327 17 GCFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLK----PRCSACDEVR 61 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~----~~C~~C~~~I 61 (168)
+-|.|.+|...+.+ ..... =|..||..|..+.+. ..|..|...+
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45899999988865 33444 389999999876542 4788888776
No 103
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=50.81 E-value=9 Score=23.28 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=32.5
Q ss_pred CCCccccccccccCCCceEEE-CCeeccccchHhhhc----cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLK----PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~----~~C~~C~~~I~ 62 (168)
.+=+.|.+|...+.+ ..... =|..||..|..+.+. ..|..|.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345789999888865 33444 389999999876653 46777777654
No 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.14 E-value=8 Score=23.68 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc--------cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--------PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--------~~C~~C~~~I~ 62 (168)
+=+.|.+|...+... ....=|..||..|..+.+. ..|..|...+.
T Consensus 18 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 457899998887553 3445678899999776432 34555555543
No 105
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=48.17 E-value=8.1 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.408 Sum_probs=32.4
Q ss_pred CccccccccccCCCceEE-ECCeeccccchHhhhc--cccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
-+.|.+|...+.+ .... .=|..||..|..+.+. ..|..|...+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4789999888855 3444 6789999999876643 56777777765
No 106
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=48.02 E-value=13 Score=20.67 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred CccccccccccCCC---ceEEECCeeccccchHhhhc--cccccCccccc
Q psy327 18 CFTCSVCNELLVDL---IYFYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~---~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
-..|.+|...+.+. .....=|..||..|..+.+. ..|..|...|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35788888877431 22334577888888766543 56777766553
No 107
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=47.94 E-value=13 Score=22.52 Aligned_cols=31 Identities=32% Similarity=0.754 Sum_probs=22.3
Q ss_pred eecCCCCccC-CCCCceec--CCeeeecccccCC
Q psy327 99 FCCATCSLSL-LGRPFLPR--AGVIFCSIACSKG 129 (168)
Q Consensus 99 F~C~~C~~~l-~~~~f~~~--dg~~~C~~~C~~~ 129 (168)
..|+.|.++| .|+..+-+ .-++||...|-..
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~ 54 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS 54 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHcc
Confidence 4799999999 66666654 5678888766543
No 108
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=46.14 E-value=8.9 Score=27.31 Aligned_cols=46 Identities=13% Similarity=0.408 Sum_probs=36.0
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc---cccccCcccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRVQ 63 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 63 (168)
+=|.|.+|...|.. .....-|..||..|..+.+. .+|..|..+|..
T Consensus 17 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45789999988865 34557899999999877653 489999988864
No 109
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.09 E-value=25 Score=21.56 Aligned_cols=47 Identities=17% Similarity=0.437 Sum_probs=31.9
Q ss_pred CCCccccccccccCCC---ceEEECCeeccccchHhhhc-----cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDL---IYFYRGDKLYCGRHHAETLK-----PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~---~~~~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~ 62 (168)
.+=+.|.+|...+... .....=|..||..|..+.+. ..|..|.+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3457899998888552 22335678899999876643 45777777664
No 110
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=44.89 E-value=14 Score=23.27 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhh--ccccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
+.-|.|.+|...+.+ ......|..||..|-.+.+ ...|..|++++.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 567999999988865 4555689999999865543 356777777665
No 111
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=44.64 E-value=10 Score=25.36 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=29.6
Q ss_pred ccccccccCCCceEEECCeeccccchHhh---hccccccCcccccc
Q psy327 21 CSVCNELLVDLIYFYRGDKLYCGRHHAET---LKPRCSACDEVRVQ 63 (168)
Q Consensus 21 C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 63 (168)
|..|+.|+....-...=+..+|.+|+... -...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 67788888542223344568999998653 34679999999874
No 112
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=44.07 E-value=5 Score=30.13 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=24.2
Q ss_pred ceecCCCCccCCCCCceecCCeeeecccccCC
Q psy327 98 CFCCATCSLSLLGRPFLPRAGVIFCSIACSKG 129 (168)
Q Consensus 98 CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~ 129 (168)
=..|..|+...-...-...||+++|.+ |+..
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~-C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKP-DYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHH-HHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChh-hhcc
Confidence 367999998875555567799999995 9865
No 113
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.81 E-value=11 Score=24.65 Aligned_cols=43 Identities=21% Similarity=0.550 Sum_probs=29.8
Q ss_pred ccccccccccCCCceEEECCeeccccchHhhhc-----cccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK-----PRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~ 62 (168)
+.|.+|...+... ....=|..||..|..+.+. ..|..|..++.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 5788888777542 2345678899999876654 26777777765
No 114
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=43.17 E-value=3.6 Score=23.33 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.1
Q ss_pred eEEECCeeccccchHhh
Q psy327 33 YFYRGDKLYCGRHHAET 49 (168)
Q Consensus 33 ~~~~~g~~yC~~cy~~~ 49 (168)
|...|-+|||.+|+.++
T Consensus 22 ~mSVnTQP~CHEC~err 38 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERR 38 (49)
T ss_dssp BCCTTTTTSCHHHHHHH
T ss_pred EEEecCccchHHHHHHH
Confidence 34579999999999875
No 115
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.70 E-value=22 Score=21.39 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCccccccccccCCCc--eEEECCeeccccchHhhh--ccccccCcccccc
Q psy327 17 GCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAETL--KPRCSACDEVRVQ 63 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 63 (168)
+-..|.+|...+.... ....=+..||..|..+.+ ...|..|...|.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899988775432 223457788888876543 3568778777764
No 116
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=42.35 E-value=18 Score=23.59 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=34.3
Q ss_pred CCCccccccccccCCCceEEECC-eeccccchHhhh--ccccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGD-KLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g-~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
+.-|.|.+|...+.+ ......| ..||..|-.+.+ ...|..|++++.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 678999999988865 4556678 999999976554 356777776664
No 117
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.98 E-value=14 Score=22.34 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=24.5
Q ss_pred cCCCCCCCCCCccccccccc-cCCCceEE--ECCeeccccchHh
Q psy327 8 AGPNSCWHPGCFTCSVCNEL-LVDLIYFY--RGDKLYCGRHHAE 48 (168)
Q Consensus 8 ~a~~~~~H~~Cf~C~~C~~~-L~~~~~~~--~~g~~yC~~cy~~ 48 (168)
.|....+|+ ..|..|++. |.+..|.= =.+--+|..||..
T Consensus 3 s~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 3 SGSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp CCSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 345667887 899999974 76654421 1234567777664
No 118
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=41.97 E-value=6.8 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.505 Sum_probs=29.6
Q ss_pred ccccccccccCCC-----c-eEEECCeeccccchHhhh--ccccccCccccc
Q psy327 19 FTCSVCNELLVDL-----I-YFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~-----~-~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
+.|.+|...+.+. . ....=|..||..|..+.+ ...|..|..++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 6788887777432 1 345677889999987654 356777777665
No 119
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=40.70 E-value=9.5 Score=27.04 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=31.9
Q ss_pred CCccccccccccCCCceEE-ECCeeccccchHhhhc---cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
.=+.|.+|...+.+ .... .=|..||..|..+.+. ..|..|..+|.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34689999888865 3333 5688999999876643 45777777764
No 120
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=40.60 E-value=13 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.464 Sum_probs=33.0
Q ss_pred CccccccccccCCCceEEECCeeccccchHhhh---ccccccCcccccc
Q psy327 18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEVRVQ 63 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 63 (168)
=+.|.+|...+.+ .....=|..||..|..+.+ ...|..|..++..
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3789999888754 3345678899999987654 3578888887763
No 121
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.41 E-value=6.9 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.508 Sum_probs=30.9
Q ss_pred CCCccccccccccCCC----c--eEEECCeeccccchHhhhc--cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDL----I--YFYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~----~--~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
.+=+.|.+|...+.+. . ....=|..||..|..+.+. ..|..|..+|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4557888887776432 1 3345678899999876543 56777776654
No 122
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.29 E-value=9.6 Score=22.64 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc--cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
+-+.|.+|...+.. ....=|..||..|..+.+. ..|..|..+|.
T Consensus 14 ~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 45788899887765 4556778899999776433 55666666655
No 123
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=39.04 E-value=10 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=31.7
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhh---ccccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 62 (168)
+=|.|.+|...+.. .....=|..||..|..+.+ ...|..|...+.
T Consensus 14 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 35789999887754 3344667889999976654 346888887765
No 124
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=38.99 E-value=14 Score=22.98 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCccccccccccCCC-ceEE--ECCeeccccchHhhh---ccccccCccccc
Q psy327 17 GCFTCSVCNELLVDL-IYFY--RGDKLYCGRHHAETL---KPRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~-~~~~--~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 62 (168)
+=+.|.+|-.++... .-+. .=|..+|..|+.+.. ...|..|.+++.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 346788887777432 1111 257889999988764 346777776665
No 125
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=38.44 E-value=16 Score=24.43 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=31.4
Q ss_pred CccccccccccCCCceEEECCeeccccchHhhhc---cccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
-+.|.+|...+.. .....=|..||..|....+. ..|..|..++.
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3689999887754 33446688899999876543 37888887775
No 126
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.98 E-value=10 Score=21.80 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=26.3
Q ss_pred CccccccccccCCCceEEECCeeccccchHhhhccccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 62 (168)
=+.|.+|...+... ....=|..||..|..+ ....|..|.+.+.
T Consensus 6 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CCCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEee
Confidence 36788887776542 2334566777777554 3456666666654
No 127
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=37.84 E-value=15 Score=24.47 Aligned_cols=46 Identities=13% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc---cccccCcccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRVQ 63 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 63 (168)
+=|.|.+|...+.. .....=|..||..|..+.+. ..|..|..++..
T Consensus 17 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34789999888855 34456788999999876543 488889888764
No 128
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.37 E-value=13 Score=21.69 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=28.9
Q ss_pred cccccccc-ccCCCc---eEEECCeeccccchHhhhc---cccccCccccc
Q psy327 19 FTCSVCNE-LLVDLI---YFYRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~-~L~~~~---~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
+.|.+|.. .+.+.. ....=|..||..|..+.+. ..|..|.+++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 57888887 554432 2345688899999876642 45777776664
No 129
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=35.93 E-value=8.8 Score=23.31 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhh
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAET 49 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 49 (168)
+=+.|.+|...+.+. ....=|..||..|..+.
T Consensus 11 ~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~ 42 (79)
T 2egp_A 11 EEVTCPICLELLTEP-LSLDCGHSLCRACITVS 42 (79)
T ss_dssp CCCEETTTTEECSSC-CCCSSSCCCCHHHHSCC
T ss_pred cCCCCcCCCcccCCe-eECCCCCHHHHHHHHHH
Confidence 347899998877542 23456778888887654
No 130
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=35.34 E-value=13 Score=24.02 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=30.0
Q ss_pred ccccccccccCCCceE-EECCeeccccchHhhhc---cccccCccccc
Q psy327 19 FTCSVCNELLVDLIYF-YRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
+.|.+|...+.. ... ..=|..||..|..+.+. ..|..|..++.
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 678999888754 223 44578899999765543 46888877765
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=32 Score=20.40 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=30.4
Q ss_pred CccccccccccCCCceE--EECCeeccccchHhhh--ccccccCcccccc
Q psy327 18 CFTCSVCNELLVDLIYF--YRGDKLYCGRHHAETL--KPRCSACDEVRVQ 63 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 63 (168)
=..|.+|...+...... ..=+..||..|..+.+ ...|..|..+|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45788888877543322 2467788888876543 3578888877764
No 132
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=34.89 E-value=8.7 Score=26.87 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=33.4
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhhhc---cccccCccccc
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
+=|.|.+|...|... ....=|..||..|..+.+. ..|..|..+|.
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 457899998888653 4457788999999877654 47888877653
No 133
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.53 E-value=20 Score=25.16 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=31.7
Q ss_pred CccccccccccCCCceEEECCeeccccchHhhhc---cccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 62 (168)
=+.|.+|...+.. .....=|..||..|..+.+. ..|..|..++.
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 3689999887754 33456778899999776653 36888887775
No 134
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.03 E-value=28 Score=20.98 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCce--EEECCeeccccchHhhhc--cccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIY--FYRGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~--~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
..-+.|.+|...+....- ...=+..||..|..+.+. ..|..|...|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 345788999887754322 234567888888765432 45777776665
No 135
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=18 Score=20.88 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=25.1
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhhc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK 51 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 51 (168)
.+=+.|.+|...+.+ .....=|..||..|..+.+.
T Consensus 18 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 18 QEEVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred ccCCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 345789999888765 33446788899999876643
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=32.85 E-value=25 Score=26.51 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=35.9
Q ss_pred CCCCCccccccccccCCCceEEECCeeccccchHhhh---ccccccCccccc
Q psy327 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEVRV 62 (168)
Q Consensus 14 ~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 62 (168)
--+.-|.|.+|...+.+ ......|..||..|-.+.+ ...|..|.+++.
T Consensus 204 ~~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44678999999988865 4556789999999976543 234888887775
No 137
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=31.78 E-value=11 Score=23.27 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=10.2
Q ss_pred ECCeeccccchHhh
Q psy327 36 RGDKLYCGRHHAET 49 (168)
Q Consensus 36 ~~g~~yC~~cy~~~ 49 (168)
=||.+||..||.+.
T Consensus 25 CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 25 CDGDLYCARCFREG 38 (67)
T ss_dssp TTSEEECSSHHHHH
T ss_pred CCCceehHHHHHHH
Confidence 36678888887764
No 138
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=31.60 E-value=30 Score=19.10 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=25.5
Q ss_pred ccccccccccCCCc-eE-E-ECCeeccccchHhhh--ccccccCcccc
Q psy327 19 FTCSVCNELLVDLI-YF-Y-RGDKLYCGRHHAETL--KPRCSACDEVR 61 (168)
Q Consensus 19 f~C~~C~~~L~~~~-~~-~-~~g~~yC~~cy~~~~--~~~C~~C~~~I 61 (168)
..|.+|...+.... .. . .=|..||..|..+.+ ...|..|...|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 56888887775432 12 2 256788888876543 24566665544
No 139
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.57 E-value=28 Score=21.09 Aligned_cols=41 Identities=20% Similarity=0.487 Sum_probs=27.8
Q ss_pred ccccccccccCCCceEEECCee-ccccchHhhhccccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKL-YCGRHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~-yC~~cy~~~~~~~C~~C~~~I~ 62 (168)
+.|.+|...+.+. .+..=|.. +|..|.... ..|..|..+|.
T Consensus 25 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 4677887666543 23455666 899887664 67888887775
No 140
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=29.83 E-value=26 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=34.9
Q ss_pred CCCccccccccccCCCceEEECCeeccccchHhhh---ccccccCccccc
Q psy327 16 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEVRV 62 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 62 (168)
+.-|.|.+|...+.+ ......|..||..|-...+ +..|..|++++.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 678999999998865 5566899999999865443 235777777765
No 141
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.49 E-value=44 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=18.7
Q ss_pred CceeeCCCCceecCCCCccCCCCCceecC
Q psy327 89 GQHWHATDSCFCCATCSLSLLGRPFLPRA 117 (168)
Q Consensus 89 ~~~~H~~~~CF~C~~C~~~l~~~~f~~~d 117 (168)
+..||. .=.+|..|+.. .+..|+..+
T Consensus 215 ~t~W~~--~R~~C~~Cg~~-~~l~y~~~e 240 (309)
T 2fiy_A 215 ACEWHY--VRIKCSHCEES-KHLAYLSLE 240 (309)
T ss_dssp CCEEEC--CTTSCSSSCCC-SCCEEECCC
T ss_pred CCEEee--cCcCCcCCCCC-CCeeEEEec
Confidence 678887 77889999987 555555443
No 142
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=28.85 E-value=11 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.668 Sum_probs=14.6
Q ss_pred CCceeeCCCCce--------ecCCCCccCCCC
Q psy327 88 EGQHWHATDSCF--------CCATCSLSLLGR 111 (168)
Q Consensus 88 ~~~~~H~~~~CF--------~C~~C~~~l~~~ 111 (168)
-|..||. .|+ .|..|...+...
T Consensus 35 CgH~fc~--~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 35 CGHVFCS--QCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TSCEEEH--HHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCChHhH--HHHHHHHHcCCCCCCCCCccChh
Confidence 4677776 666 677777776543
No 143
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=28.59 E-value=29 Score=22.20 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=8.2
Q ss_pred ecCCCCccCCCCCce
Q psy327 100 CCATCSLSLLGRPFL 114 (168)
Q Consensus 100 ~C~~C~~~l~~~~f~ 114 (168)
.|..|+..+.|..|.
T Consensus 47 ~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 47 QCSYCDYKFTGGSYK 61 (83)
T ss_dssp EETTTCCEEECCSSS
T ss_pred ECCCCCCEecCCEec
Confidence 356666666555443
No 144
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=27.96 E-value=16 Score=33.02 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=43.3
Q ss_pred eeccccchHhhhc----------cccccCcccccccCCccc---------cCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327 39 KLYCGRHHAETLK----------PRCSACDEVRVQVGGHRT---------RDLNINYFSSLPAGQMSHEGQHWHATDSCF 99 (168)
Q Consensus 39 ~~yC~~cy~~~~~----------~~C~~C~~~I~~~~g~~~---------~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF 99 (168)
.-.|.+|-.+.+. ..|..|+--.+-....+| -+.|+.|.+. .-.-.++.||. .--
T Consensus 106 ~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~E----Y~dp~dRRfhA--qp~ 179 (772)
T 4g9i_A 106 IAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSE----YEDPLNRRYHA--EPT 179 (772)
T ss_dssp CCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHH----HHCSSSTTTTC--TTC
T ss_pred hhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHH----hCCCCCCCCcC--CCC
Confidence 3457777665543 358888865443334444 5678888733 34456899998 889
Q ss_pred ecCCCCccC
Q psy327 100 CCATCSLSL 108 (168)
Q Consensus 100 ~C~~C~~~l 108 (168)
.|..|+-.|
T Consensus 180 aC~~CGP~l 188 (772)
T 4g9i_A 180 ACPVCGPSY 188 (772)
T ss_dssp CCTTTSCCE
T ss_pred CCccCCceE
Confidence 999999886
No 145
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.69 E-value=29 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCccccccccccCCCceEEECCeeccccchHhh
Q psy327 17 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAET 49 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 49 (168)
+=+.|.+|...+.+. ....=|..||..|..+.
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred cCCCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 346888998877553 33456778888887765
No 146
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.51 E-value=32 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=16.3
Q ss_pred ceecCCCCccCCCCCceecCCeeeecccccC
Q psy327 98 CFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128 (168)
Q Consensus 98 CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~ 128 (168)
=|.|..|+..+.-. ..+.+.|+. |..
T Consensus 28 ~Y~C~~CG~~~e~~----~~d~irCp~-CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLS----RTDAVRCKD-CGH 53 (70)
T ss_dssp CEECSSSCCEECCC----TTSTTCCSS-SCC
T ss_pred EEECCCCCCcceeC----CCCCccCCC-CCc
Confidence 47899998885322 344566774 544
No 147
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.49 E-value=16 Score=32.32 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred cccccCcccccccCCccc---------cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccC
Q psy327 52 PRCSACDEVRVQVGGHRT---------RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108 (168)
Q Consensus 52 ~~C~~C~~~I~~~~g~~~---------~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l 108 (168)
..|..|+--.+-....+| -+.|+.|.+. .-.-.++.||. .--.|..|+-.|
T Consensus 40 ~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~E----Y~dp~dRRfHA--qp~aCp~CGP~l 99 (657)
T 3ttc_A 40 INCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKE----YRDPLDRRFHA--QPVACPECGPYL 99 (657)
T ss_dssp CCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHH----HHCTTSTTTTC--TTCCCTTTSCCE
T ss_pred ccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHH----hCCCCCCcCcC--CCCcCcccCccc
Confidence 458888855443334444 5678888743 23345799998 889999999877
No 148
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=25.44 E-value=43 Score=19.50 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCccccccccccCCCc--eEEECCeeccccchHhhh--ccccccCccccc
Q psy327 17 GCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAETL--KPRCSACDEVRV 62 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 62 (168)
.-..|.+|...+.... ....=|..||..|..+.+ ...|..|...|.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3467888877774322 223456778888876543 356777777765
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=24.61 E-value=44 Score=21.45 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=25.0
Q ss_pred CCccccccccccCCCceEE---ECCeeccccchHhh
Q psy327 17 GCFTCSVCNELLVDLIYFY---RGDKLYCGRHHAET 49 (168)
Q Consensus 17 ~Cf~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~~ 49 (168)
.=+.|..|...|.++.|.. ....-+|-+|-...
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence 4578999999999988876 55566777775544
No 150
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=34 Score=21.76 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCceEE-ECCeeccccchHhhh
Q psy327 16 PGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETL 50 (168)
Q Consensus 16 ~~Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~ 50 (168)
..=|.|.+|...+.+ .... ..|..||..|-.+.+
T Consensus 5 ~~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l 39 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMI 39 (94)
T ss_dssp SSCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHH
T ss_pred CcEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHH
Confidence 345899999988865 5556 489999999966544
No 151
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.77 E-value=29 Score=15.24 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=7.7
Q ss_pred eecCCCCccCC
Q psy327 99 FCCATCSLSLL 109 (168)
Q Consensus 99 F~C~~C~~~l~ 109 (168)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777877764
No 152
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.26 E-value=21 Score=32.13 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCeeccccchHhhhc----------cccccCcccccccCCccc---------cCCcccccCCCCCCceeeCCceeeCCCC
Q psy327 37 GDKLYCGRHHAETLK----------PRCSACDEVRVQVGGHRT---------RDLNINYFSSLPAGQMSHEGQHWHATDS 97 (168)
Q Consensus 37 ~g~~yC~~cy~~~~~----------~~C~~C~~~I~~~~g~~~---------~~~C~~C~~~i~~~~v~~~~~~~H~~~~ 97 (168)
-+...|.+|-.+.+. ..|..|+--.+-....+| -+.|+.|.+. .-.-.++.||. .
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~E----Y~dp~~RRfhA--q 182 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSRE----YHDPHDRRFHA--Q 182 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHH----HTCTTSTTTTC--T
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHH----hcCcccccccC--C
Confidence 334567777666543 348888855443333444 5678888743 23345799998 8
Q ss_pred ceecCCCCccC
Q psy327 98 CFCCATCSLSL 108 (168)
Q Consensus 98 CF~C~~C~~~l 108 (168)
--.|..|+-.|
T Consensus 183 p~aC~~CGP~l 193 (761)
T 3vth_A 183 PVACFDCGPSL 193 (761)
T ss_dssp TCCCTTTSCCE
T ss_pred CCcCCccCCee
Confidence 89999999877
No 153
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.01 E-value=69 Score=18.68 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=31.6
Q ss_pred CccccccccccCCCceEE-ECCeeccccchHhhhc--cccccCccccc
Q psy327 18 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--PRCSACDEVRV 62 (168)
Q Consensus 18 Cf~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~--~~C~~C~~~I~ 62 (168)
-|.|..++..+.+ .... .+|..|++.+-.+.+. .+|...++++.
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 3789999998865 4566 7999999998765443 34666666664
No 154
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.78 E-value=15 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=9.6
Q ss_pred eeCCCCceecCCCCccC
Q psy327 92 WHATDSCFCCATCSLSL 108 (168)
Q Consensus 92 ~H~~~~CF~C~~C~~~l 108 (168)
.|..+.-|.|..|++.+
T Consensus 33 ~H~~~k~~~C~~C~k~f 49 (62)
T 1vd4_A 33 FDPMTGTFRCTFCHTEV 49 (62)
T ss_dssp EETTTTEEBCSSSCCBC
T ss_pred hcCCCCCEECCCCCCcc
Confidence 44433456666666665
No 155
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.33 E-value=32 Score=15.27 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=8.3
Q ss_pred eecCCCCccCC
Q psy327 99 FCCATCSLSLL 109 (168)
Q Consensus 99 F~C~~C~~~l~ 109 (168)
|.|..|++.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 67888887764
No 156
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=32 Score=20.78 Aligned_cols=41 Identities=20% Similarity=0.521 Sum_probs=26.5
Q ss_pred ccccccccccCCCceEEECCee-ccccchHhhhccccccCccccc
Q psy327 19 FTCSVCNELLVDLIYFYRGDKL-YCGRHHAETLKPRCSACDEVRV 62 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~~~g~~-yC~~cy~~~~~~~C~~C~~~I~ 62 (168)
+.|.+|...+.+.. +..=|.. +|..|..+. ..|..|.++|.
T Consensus 26 ~~C~IC~~~~~~~~-~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 67 (75)
T 2ecg_A 26 KLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV--DKCPMCYTVIT 67 (75)
T ss_dssp HSCSSSCSSCCCBC-CSSSCCCCBCHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCcCCCCCCCEE-EecCCCHHHHHHHhhCC--CCCccCCceec
Confidence 46777766664432 3345566 898887543 67878877775
No 157
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.93 E-value=96 Score=17.13 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=12.7
Q ss_pred eecCCCCc-cCCCCCceecCCeeeecccccCC
Q psy327 99 FCCATCSL-SLLGRPFLPRAGVIFCSIACSKG 129 (168)
Q Consensus 99 F~C~~C~~-~l~~~~f~~~dg~~~C~~~C~~~ 129 (168)
+.|..|+. .| .|-...|.+.|.. |...
T Consensus 6 ~~CP~C~~~~l---~~d~~~gelvC~~-CG~v 33 (50)
T 1pft_A 6 KVCPACESAEL---IYDPERGEIVCAK-CGYV 33 (50)
T ss_dssp CSCTTTSCCCE---EEETTTTEEEESS-SCCB
T ss_pred EeCcCCCCcce---EEcCCCCeEECcc-cCCc
Confidence 35666654 22 1222345666663 5443
No 158
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.36 E-value=43 Score=14.97 Aligned_cols=12 Identities=17% Similarity=0.758 Sum_probs=8.6
Q ss_pred eecCCCCccCCC
Q psy327 99 FCCATCSLSLLG 110 (168)
Q Consensus 99 F~C~~C~~~l~~ 110 (168)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 678888877643
No 159
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.11 E-value=58 Score=20.42 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=22.7
Q ss_pred ccccccccccCCCceEE--ECCeeccccchHhhh
Q psy327 19 FTCSVCNELLVDLIYFY--RGDKLYCGRHHAETL 50 (168)
Q Consensus 19 f~C~~C~~~L~~~~~~~--~~g~~yC~~cy~~~~ 50 (168)
|.|.+|-..+.....+. .=|..||..|..+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 67888877775544443 368999999976553
Done!