RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy327
(168 letters)
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 85.9 bits (213), Expect = 2e-22
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLN 73
WH F C C+ +L IY DK C + + C C +
Sbjct: 26 WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNA---IDPE------ 76
Query: 74 INYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
++++ WHA+ CF C+ CS L+G+ F+P G++FCS+ C K
Sbjct: 77 --------VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123
Score = 40.5 bits (95), Expect = 3e-05
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 49 TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
+ KPRC+ CDE+ I A E Q+WH FCC C L
Sbjct: 1 SEKPRCAGCDEL-------------IFSNEYTQA-----ENQNWHL--KHFCCFDCDSIL 40
Query: 109 LGRPFLPRAGVIFC 122
G ++ C
Sbjct: 41 AGEIYVMVNDKPVC 54
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 73.6 bits (181), Expect = 5e-18
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
N WH CF C+ C L + + + +K+ C + P+C C +
Sbjct: 26 NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKA---------- 75
Query: 71 DLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATC 104
+ AG + ++G WH CF +
Sbjct: 76 ---------IVAGDQNVEYKGTVWH--KDCFSGPSS 100
Score = 38.2 bits (89), Expect = 1e-04
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+ ++ + WH +CF CA C L F+ + I C
Sbjct: 22 VHYKNRFWHD--TCFRCAKCLHPLANETFVAKDNKILC 57
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 71.4 bits (175), Expect = 2e-17
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 82 AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
++++ WHA+ CF C+ CS L+G+ F+P G++FCS+ C K
Sbjct: 16 VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62
Score = 32.5 bits (74), Expect = 0.008
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 11 NSCWH--PGCFTCSVCNELLVDLIYFYRGDKLYCGR 44
N WH CF CS C++ L+ + ++C
Sbjct: 23 NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 58
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 65.8 bits (160), Expect = 5e-14
Identities = 31/142 (21%), Positives = 45/142 (31%), Gaps = 32/142 (22%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
S +H CF C VC + L GD++YC + + P+ + +
Sbjct: 27 GSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86
Query: 71 DLNINYFSS------------------------------LPAGQMSHEGQHWHATDSCFC 100
L I Y A ++ G+ WH SCF
Sbjct: 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWH--KSCFR 144
Query: 101 CATCSLSLLGRPFLPRAGVIFC 122
CA C SL + G I+C
Sbjct: 145 CAKCGKSLESTTLADKDGEIYC 166
Score = 49.6 bits (118), Expect = 4e-08
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDE 59
WH CF C+ C + L + ++YC +A+ P+ +
Sbjct: 135 GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183
Score = 33.8 bits (77), Expect = 0.013
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 81 PAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
A ++ EG +H SCF C C +L I+C
Sbjct: 19 FAEEVQCEGSSFH--KSCFLCMVCKKNLDSTTVAVHGDEIYCK 59
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 59.8 bits (145), Expect = 7e-13
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+ HP C+ C+ C L +F+ D++YC +H E + S
Sbjct: 34 DRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG 79
Score = 33.6 bits (77), Expect = 0.005
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 88 EGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+H H C+ C C +L + I+C
Sbjct: 33 RDRHRHP--ECYVCTDCGTNLKQKGHFFVEDQIYC 65
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 57.9 bits (140), Expect = 3e-12
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G + + +C+ C G + +++EGQ WH D
Sbjct: 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSV--------------VAYEGQSWH--D 44
Query: 97 SCFCCATCSLSLLGRPFLPRAGVIFCS 123
CF C CS++L + F+ ++C
Sbjct: 45 YCFHCKKCSVNLANKRFVFHQEQVYCP 71
Score = 41.7 bits (98), Expect = 5e-06
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
WH CF C C+ L + + + +++YC +
Sbjct: 39 GQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 59.5 bits (144), Expect = 6e-12
Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 26/116 (22%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
+ WH C CS C+ L + F RG+ +YC + +C+AC
Sbjct: 26 DRHWHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFGTKCAACQLG---------- 74
Query: 71 DLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATCSLSLLG--RPFLPRAGVIFC 122
+P Q + +H CF C C L +L + C
Sbjct: 75 ---------IPPTQVVRRAQDFVYHLH--CFACVVCKRQLATGDEFYLMEDSRLVC 119
Score = 47.9 bits (114), Expect = 1e-07
Identities = 16/105 (15%), Positives = 23/105 (21%), Gaps = 23/105 (21%)
Query: 11 NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHR 68
+ +H CF C VC L D Y +L C + +
Sbjct: 86 DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGG--------- 136
Query: 69 TRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPF 113
S M H D + P+
Sbjct: 137 ----------SGGGTPMVAASPERH--DGGLQANPVEVQSYQPPW 169
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 57.0 bits (138), Expect = 9e-12
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 21/86 (24%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G + PRC+ C + L G +++ Q WH
Sbjct: 1 GSSGSSGPCYENKFAPRCARCSKT-------------------LTQGGVTYRDQPWHR-- 39
Query: 97 SCFCCATCSLSLLGRPFLPRAGVIFC 122
C C C L G+ F R +C
Sbjct: 40 ECLVCTGCQTPLAGQQFTSRDEDPYC 65
Score = 45.4 bits (108), Expect = 2e-07
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
WH C C+ C L + R + YC E S+
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 58.8 bits (142), Expect = 1e-11
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 26/117 (22%)
Query: 10 PNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRT 69
+ WH C CS C+ L + F RG+ +YC + +C+AC
Sbjct: 79 LDRHWHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFGTKCAACQLG--------- 128
Query: 70 RDLNINYFSSLPAGQMSHE--GQHWHATDSCFCCATCSLSLLG--RPFLPRAGVIFC 122
+P Q+ +H CF C C L +L + C
Sbjct: 129 ----------IPPTQVVRRAQDFVYHLH--CFACVVCKRQLATGDEFYLMEDSRLVC 173
Score = 39.1 bits (91), Expect = 2e-04
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 11 NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHH 46
+ +H CF C VC L D Y +L C +
Sbjct: 140 DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
Score = 33.4 bits (76), Expect = 0.018
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 21/105 (20%)
Query: 18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYF 77
T + G P C+ C D I
Sbjct: 27 LITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGC--------DQHILDRFI--- 75
Query: 78 SSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+ +HWH+ C C+ C + L R F R ++C
Sbjct: 76 -------LKALDRHWHS--KCLKCSDCHVPLAERCF-SRGESVYC 110
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 56.0 bits (135), Expect = 3e-11
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+ HP CF C+ CN L YF+ +LYC H S
Sbjct: 44 DKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89
Score = 33.6 bits (77), Expect = 0.005
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 89 GQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
++ H CF CA C+L+L + + G ++C
Sbjct: 44 DKYRHP--ECFVCADCNLNLKQKGYFFVEGELYC 75
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 54.8 bits (132), Expect = 6e-11
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G + T C+ C ++ +G ++ +E +H+H +
Sbjct: 1 GSSGSSGPCYDNTFANTCAECQQL---IGHDS--------------RELFYEDRHFH--E 41
Query: 97 SCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136
CF C C SL PF + + C+ PS
Sbjct: 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81
Score = 48.3 bits (115), Expect = 2e-08
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+H GCF C C L D + + +L C + S+
Sbjct: 39 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 54.3 bits (131), Expect = 8e-11
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 19/87 (21%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G+ P+C C + + G + ++G WH
Sbjct: 1 GSSGSSGKCTTREDSPKCKGCFKA-IVAGDQN----------------VEYKGTVWH--K 41
Query: 97 SCFCCATCSLSLLGRPFLPRAGVIFCS 123
CF C+ C + F P+ +C
Sbjct: 42 DCFTCSNCKQVIGTGSFFPKGEDFYCV 68
Score = 47.7 bits (114), Expect = 3e-08
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+ WH CFTCS C +++ +F +G+ YC H S+
Sbjct: 36 GTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 55.1 bits (133), Expect = 2e-10
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 28/120 (23%)
Query: 10 PNSCWHPGCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAETL--KPRCSACDEVRVQVG 65
+ WH C +C +C L ++ +Y+ + C R + C++CD+
Sbjct: 21 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKR----- 75
Query: 66 GHRTRDLNINYFSSLPAGQMSHE--GQHWHATDSCFCCATCSLSLL-GRPFLPRAGVIFC 122
+ A +M+ + +H CF CA C G +L I C
Sbjct: 76 --------------IRAYEMTMRVKDKVYHLE--CFKCAACQKHFCVGDRYLLINSDIVC 119
Score = 42.0 bits (99), Expect = 8e-06
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK 51
+ +H CF C+ C + + + C + E K
Sbjct: 87 DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 52.9 bits (127), Expect = 3e-10
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 52 PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
C AC + + G + + + WH CF C CS+SL+G+
Sbjct: 6 SGCVACSKPISGLTGAK---------------FICFQDSQWH--SECFNCGKCSVSLVGK 48
Query: 112 PFLPRAGVIFCSIACSKGEPPTPSDSSG 139
FL + IFC C G S S
Sbjct: 49 GFLTQNKEIFCQ-KCGSGMDTDISGPSS 75
Score = 39.1 bits (91), Expect = 4e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYC 42
WH CF C C+ LV + + +++C
Sbjct: 31 WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 55.0 bits (132), Expect = 4e-10
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 37/157 (23%)
Query: 11 NSCWHPGCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAET--LKPRCSACDEVRVQVGG 66
+S WH C CS C L D+ + + + C + CSAC +
Sbjct: 25 DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ------- 77
Query: 67 HRTRDLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFC- 122
S+PA + M +G +H CF C+TC L G F G +FC
Sbjct: 78 ------------SIPASELVMRAQGNVYHL--KCFTCSTCRNRLVPGDRFHYINGSLFCE 123
Query: 123 --------SIACSKGEPPTPSDSSGPGLRPQRPRKSS 151
+ + G S G + P
Sbjct: 124 HDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMG 160
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 52.0 bits (125), Expect = 8e-10
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDE 59
+H CF C VC + L ++YC + + P+ +
Sbjct: 30 FHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75
Score = 32.8 bits (75), Expect = 0.011
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 81 PAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
A ++ +G+ +H CF C C +L ++C
Sbjct: 19 HAEEVQCDGRSFHR--CCFLCMVCRKNLDSTTVAIHDAEVYC 58
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 48.5 bits (116), Expect = 1e-08
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55
+ WH CF C C++ L + D+ YC + + S
Sbjct: 24 DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68
Score = 38.1 bits (89), Expect = 8e-05
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 52 PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
C C++ + +G ++++ Q WHA CF C TCS L G+
Sbjct: 6 SGCVKCNKA-------------------ITSGGITYQDQPWHA--DCFVCVTCSKKLAGQ 44
Query: 112 PFLPRAGVIFC 122
F +C
Sbjct: 45 RFTAVEDQYYC 55
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 48.6 bits (116), Expect = 1e-08
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
WHP F C+ C + + + LYC + + S+
Sbjct: 44 GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89
Score = 39.7 bits (93), Expect = 3e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 22/91 (24%)
Query: 33 YFYRGDKLYCGRH-HAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQH 91
+ + H A P C+ C++V + + G+
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQV-------------------IRGPFLVALGKS 46
Query: 92 WHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
WH F CA C ++ F+ G ++C
Sbjct: 47 WHP--EEFNCAHCKNTMAYIGFVEEKGALYC 75
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 47.7 bits (114), Expect = 2e-08
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
WH CF C+ C + L + R D YC + S+
Sbjct: 24 EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69
Score = 37.3 bits (87), Expect = 2e-04
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 21/71 (29%)
Query: 52 PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
C C + + G +++ Q WH CF C C L G+
Sbjct: 6 SGCVQCKKP-------------------ITTGGVTYREQPWHKE--CFVCTACRKQLSGQ 44
Query: 112 PFLPRAGVIFC 122
F R +C
Sbjct: 45 RFTARDDFAYC 55
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 47.4 bits (113), Expect = 3e-08
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
S WH CF C C + + + + ++ +C + + S+
Sbjct: 26 GSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71
Score = 38.1 bits (89), Expect = 8e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
M ++G WH ++CF C C + + F+P+ FC
Sbjct: 22 MEYKGSSWH--ETCFICHRCQQPIGTKSFIPKDNQNFC 57
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 47.1 bits (112), Expect = 4e-08
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSAC 57
+ +H GCF CS C L ++ + YC + TL+ +
Sbjct: 26 DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71
Score = 35.5 bits (82), Expect = 7e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 89 GQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+ +H CF C+TC L G+ F +C
Sbjct: 26 DRVFHV--GCFVCSTCRAQLRGQHFYAVERRAYC 57
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 47.3 bits (113), Expect = 4e-08
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
++ WHP CF C C +F + +C H+ S+
Sbjct: 34 DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79
Score = 43.5 bits (103), Expect = 1e-06
Identities = 17/86 (19%), Positives = 22/86 (25%), Gaps = 21/86 (24%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G+ P+C C+ + +S WH
Sbjct: 1 GSSGSSGKDFLAMFSPKCGGCNRP-------------------VLENYLSAMDTVWHPE- 40
Query: 97 SCFCCATCSLSLLGRPFLPRAGVIFC 122
CF C C S F G FC
Sbjct: 41 -CFVCGDCFTSFSTGSFFELDGRPFC 65
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 47.0 bits (112), Expect = 4e-08
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
WH CF CS C + L + YC + S+
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71
Score = 38.9 bits (91), Expect = 5e-05
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 19/72 (26%)
Query: 51 KPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLG 110
CSAC E V G + + + GQ WH CF C+ C L
Sbjct: 5 SSGCSACGET-VMPGSRK----------------LEYGGQTWHEH--CFLCSGCEQPLGS 45
Query: 111 RPFLPRAGVIFC 122
R F+P G +C
Sbjct: 46 RSFVPDKGAHYC 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 45.9 bits (109), Expect = 1e-07
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55
N+ WHP CF C +C E+L D+ + + C H S
Sbjct: 24 NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+ WH CF C C L F+ AG C
Sbjct: 20 IKAMNNSWHP--ECFRCDLCQEVLADIGFVKNAGRHLC 55
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 45.9 bits (109), Expect = 1e-07
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 11 NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKPRCSA 56
+HP CF C C ++ D + LYCG+ H E + S
Sbjct: 34 EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81
Score = 34.8 bits (80), Expect = 0.002
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 23/88 (26%)
Query: 37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
G G+ + C C + M +H
Sbjct: 1 GSSGSSGKDYWGKFGEFCHGCSL-------------------LMTGPFMVAGEFKYHP-- 39
Query: 97 SCFCCATCSLSLL--GRPFLPRAGVIFC 122
CF C +C + + L + ++C
Sbjct: 40 ECFACMSCKVIIEDGDAYALVQHATLYC 67
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 45.1 bits (107), Expect = 2e-07
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLKPRCSA 56
+HPGCFTC VC+ L + + +++C S+
Sbjct: 34 GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80
Score = 32.7 bits (75), Expect = 0.009
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 89 GQHWHATDSCFCCATCSLSLLGRPF-LPRAGVIFC 122
G+ +H CF C C L G PF + I C
Sbjct: 34 GKAYHP--GCFTCVVCHRGLDGIPFTVDATSQIHC 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 44.8 bits (106), Expect = 3e-07
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 47 AETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSL 106
+ C+ C +GG + +S E + WH + CF C CSL
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTK---------------YISFEERQWH--NDCFNCKKCSL 43
Query: 107 SLLGRPFLPRAGVIFCS 123
SL+GR FL I C
Sbjct: 44 SLVGRGFLTERDDILCP 60
Score = 44.8 bits (106), Expect = 3e-07
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC 54
WH CF C C+ LV + D + C + P
Sbjct: 28 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 45.4 bits (107), Expect = 5e-07
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 13/101 (12%)
Query: 10 PNSCWHPGCFTCSVCNELLVDL--IYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGH 67
+S WH C CS C L D+ + + + C + + + GG
Sbjct: 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83
Query: 68 RTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
G+ + G + D +
Sbjct: 84 VMV-----------VGEPTLMGGEFGDEDERLITRLENTQF 113
Score = 29.2 bits (65), Expect = 0.31
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 89 GQHWHATDSCFCCATCSLSL--LGRPFLPRAGVIFC 122
+WH+ C C++C L +G ++G+I C
Sbjct: 25 DSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILC 58
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 44.5 bits (105), Expect = 7e-07
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACD 58
+H CF CS CN L Y ++YC H + K + + +
Sbjct: 38 FHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 82
Score = 30.2 bits (68), Expect = 0.10
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 81 PAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGP 140
P ++ Q +H SCF C+ C+ L + G I+C ++ + G
Sbjct: 27 PMERLLANQQVFHI--SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 84
Query: 141 GLRP 144
G P
Sbjct: 85 GSGP 88
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 43.5 bits (103), Expect = 9e-07
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP 52
+H CF C+ C + + +++ + YC P
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 73
Score = 35.5 bits (82), Expect = 9e-04
Identities = 12/81 (14%), Positives = 18/81 (22%), Gaps = 19/81 (23%)
Query: 42 CGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCC 101
C C ++ G+ +H + CF C
Sbjct: 2 SEFMANALASATCERCKG-GFAPAEKI----------------VNSNGELYH--EQCFVC 42
Query: 102 ATCSLSLLGRPFLPRAGVIFC 122
A C F G +C
Sbjct: 43 AQCFQQFPEGLFYEFEGRKYC 63
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 43.0 bits (102), Expect = 1e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
WH F C+ C + + ++ R YC H+ +
Sbjct: 24 GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61
Score = 36.5 bits (85), Expect = 3e-04
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 21/71 (29%)
Query: 52 PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
P C AC + ++ G+ WH F CA C LG
Sbjct: 6 PICGACRRP-------------------IEGRVVNAMGKQWHV--EHFVCAKCEKPFLGH 44
Query: 112 PFLPRAGVIFC 122
R G+ +C
Sbjct: 45 RHYERKGLAYC 55
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 44.3 bits (104), Expect = 1e-06
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 19/101 (18%)
Query: 10 PNSCWHPGCFTCSVCNELLVDL--IYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGH 67
+ WH C +C +C L ++ +Y+ + C R + V
Sbjct: 22 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV----- 76
Query: 68 RTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
+ G+ + G + D +
Sbjct: 77 ------------MVVGEPTLMGGEFGDEDERLITRLENTQF 105
Score = 28.5 bits (63), Expect = 0.51
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 89 GQHWHATDSCFCCATCS--LSLLGRPFLPRAGVIFC 122
Q+WH C C C L +GR + G C
Sbjct: 23 DQYWHE--DCLSCDLCGCRLGEVGRRLYYKLGRKLC 56
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 43.2 bits (102), Expect = 2e-06
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+ WH CF C C+ +L Y + YC + S+
Sbjct: 35 DKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79
Score = 30.9 bits (70), Expect = 0.051
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 89 GQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
+ WH SCF C TCS+ L G + GV +C
Sbjct: 35 DKQWHV--SCFKCQTCSVILTGEYIS-KDGVPYC 65
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 42.0 bits (99), Expect = 4e-06
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL-KPRCSAC 57
WH C C C + L + K YC + P+
Sbjct: 20 GKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67
Score = 36.2 bits (84), Expect = 5e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 20/75 (26%)
Query: 52 PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
P+C CD+ A +++ G+ WH C C C +L
Sbjct: 1 PKCPKCDK------------------EVYFAERVTSLGKDWHR--PCLKCEKCGKTLTSG 40
Query: 112 PFLPRAGVIFCSIAC 126
G +C+ C
Sbjct: 41 GHAEHEGKPYCNHPC 55
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 40.5 bits (95), Expect = 1e-05
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
+H CF C+ C + + +++ + YC
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69
Score = 35.5 bits (82), Expect = 0.001
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
++ G+ +H CF CA C F G +C
Sbjct: 28 VNSNGELYHE--QCFVCAQCFQQFPEGLFYEFEGRKYC 63
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 40.5 bits (95), Expect = 1e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL-KPRCSA 56
WH C C C++ L + K +C + TL S+
Sbjct: 32 WHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75
Score = 34.3 bits (79), Expect = 0.002
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 81 PAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIAC 126
A ++S G+ WH C C CS +L G FC C
Sbjct: 21 FAEKVSSLGKDWHK--FCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 40.8 bits (95), Expect = 3e-05
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 14 WHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLKPRCSACD 58
+H CF C+ C + + + C + E K +
Sbjct: 32 YHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGG 77
Score = 28.9 bits (64), Expect = 0.48
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 89 GQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQRP 147
+ +H CF CA C +G +L I C T + G
Sbjct: 29 DKVYHL--ECFKCAACQKHFSVGDRYLLINSDIVCEQDI---YEWTKINGGSGGSGGSGG 83
Query: 148 RKSSKAAVTAGPEERGESPSR 168
T E G+ R
Sbjct: 84 DVMVVGEPTLMGGEFGDEDER 104
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 39.7 bits (92), Expect = 7e-05
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 11 NSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAE 48
+S WH C CS C L D + + + C +
Sbjct: 81 DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120
Score = 30.1 bits (67), Expect = 0.19
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 89 GQHWHATDSCFCCATCSLSL--LGRPFLPRAGVIFC 122
+WH+ C C++C L +G ++G+I C
Sbjct: 81 DSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILC 114
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 36.7 bits (85), Expect = 3e-04
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 11 NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHH 46
+HP CF C+VC G + C +
Sbjct: 34 GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
Score = 26.3 bits (58), Expect = 1.9
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 85 MSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSK 128
+S G+ +H CF CA C L G C CS
Sbjct: 30 VSALGKTYHP--DCFVCAVCRLPFPPGDRVTFNGKECMCQ-KCSL 71
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 36.7 bits (85), Expect = 3e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
+HP F C+ C + L +LYC H + S+
Sbjct: 37 YHPDHFNCANCGKEL-TADARELKGELYCLPCHDKMGVSGPSS 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 32.2 bits (73), Expect = 0.014
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 81 PAGQMSHEGQHWHATDSCFCCATC--SLSLLGRPFLPRAGVIFCSIACSKGEPPTPS 135
++ G +H SCF C TC +L G P G +C + + S
Sbjct: 27 VLERLCVNGHFFHR--SCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81
Score = 31.1 bits (70), Expect = 0.035
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 14 WHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKPRCS 55
+H CF C C L YC +H +T S
Sbjct: 38 FHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 29.3 bits (65), Expect = 0.15
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 14 WHPGCFTCSVCNELLVDLIYFY-RGDKLYCGR 44
+HP C C C ++ + Y +G ++
Sbjct: 27 YHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.8 bits (56), Expect = 6.5
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 12/41 (29%)
Query: 20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
TC C ++ + + + C+ C V
Sbjct: 23 TCPECKVYPPKIVERFS---------EGDVV---CALCGLV 51
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon
degradation, alpha/beta FO metalloenzyme, substrate,
oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP:
b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Length = 311
Score = 25.8 bits (56), Expect = 6.8
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 125 ACSKGEPPTPSDSSGPGLRPQRPRKSSKAAVTAGPEERGE 164
A E TP GP P A + G + G
Sbjct: 93 AALGIENATPRTIEGPLYVAGAPESVGYARMDDGSDPNGH 132
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 26.0 bits (56), Expect = 8.7
Identities = 6/44 (13%), Positives = 8/44 (18%), Gaps = 1/44 (2%)
Query: 70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFC-CATCSLSLLGRP 112
R +F D C +LL
Sbjct: 169 RQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII 212
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 25.6 bits (55), Expect = 9.1
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 76 YFSSLPAGQMSHEGQHWHATDSCFC-CATCSLSLLGRP 112
+ +L + + + + + D C A L+
Sbjct: 138 FVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYD 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.459
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,602,958
Number of extensions: 144145
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 125
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)