RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy327
         (168 letters)



>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 28.9 bits (65), Expect = 0.029
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP 52
          F C+ C +   + +++    + YC         P
Sbjct: 1  FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34



 Score = 22.7 bits (49), Expect = 4.8
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 99  FCCATCSLSLLGRPFLPRAGVIFC 122
           F CA C        F    G  +C
Sbjct: 1   FVCAQCFQQFPEGLFYEFEGRKYC 24


>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5,
           FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 25.3 bits (55), Expect = 0.70
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 101 CATCSLSLLGRPFLPRAGVIFC 122
           C  CS+SL+G+ FL +   IFC
Sbjct: 2   CGKCSVSLVGKGFLTQNKEIFC 23


>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2,
           FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 24.5 bits (53), Expect = 1.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 101 CATCSLSLLGRPFLPRAGVIFCS 123
           C  CSLSL+GR FL     I C 
Sbjct: 2   CKKCSLSLVGRGFLTERDDILCP 24


>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 24.4 bits (53), Expect = 1.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 21 CSVCNELLVDLIYFYRGDKLYCGRH 45
          C+ C   L    +F+  D++YC +H
Sbjct: 2  CTDCGTNLKQKGHFFVEDQIYCEKH 26


>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 31

 Score = 24.0 bits (52), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 21 CSVCNELLVDLIYFYRGDKLYCGRH 45
          C+ CN  L    YF+   +LYC  H
Sbjct: 2  CADCNLNLKQKGYFFVEGELYCETH 26


>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 23.6 bits (51), Expect = 3.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 99  FCCATCSLSLLGRPFLPRAGVIFC 122
           F CA C    LG     R G+ +C
Sbjct: 1   FVCAKCEKPFLGHRHYERKGLAYC 24


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 42

 Score = 22.7 bits (49), Expect = 7.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 21 CSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR 53
          CS CN  L    Y     ++YC  H  +  K +
Sbjct: 2  CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.459 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 657,983
Number of extensions: 29503
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 36
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)