Query psy3270
Match_columns 655
No_of_seqs 459 out of 2739
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:46:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 3E-127 8E-132 939.0 55.1 563 1-649 83-650 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 7E-100 2E-104 856.8 68.7 561 1-644 51-615 (653)
3 KOG0101|consensus 100.0 8.7E-99 2E-103 799.8 49.4 562 1-645 54-616 (620)
4 PRK13411 molecular chaperone D 100.0 1.4E-94 3E-99 812.8 65.7 549 1-645 50-603 (653)
5 PTZ00186 heat shock 70 kDa pre 100.0 2.4E-94 5.3E-99 804.0 66.7 548 1-644 74-626 (657)
6 PRK13410 molecular chaperone D 100.0 1.6E-94 3.6E-99 809.4 65.2 548 1-643 50-607 (668)
7 PTZ00400 DnaK-type molecular c 100.0 3.4E-94 7.4E-99 809.8 63.8 548 1-646 89-641 (663)
8 PLN03184 chloroplast Hsp70; Pr 100.0 7.9E-93 1.7E-97 798.8 66.3 546 1-644 87-637 (673)
9 PRK00290 dnaK molecular chaper 100.0 1.8E-91 4E-96 789.0 66.7 543 1-643 50-597 (627)
10 CHL00094 dnaK heat shock prote 100.0 4.9E-91 1.1E-95 782.8 66.7 555 1-653 50-612 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.1E-90 2.5E-95 780.5 65.2 543 1-642 48-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 2.5E-89 5.4E-94 764.0 66.2 539 1-644 47-586 (599)
13 KOG0102|consensus 100.0 4.6E-91 1E-95 709.4 41.0 549 1-644 75-628 (640)
14 PRK05183 hscA chaperone protei 100.0 5.1E-88 1.1E-92 754.8 64.6 536 1-644 66-602 (616)
15 PF00012 HSP70: Hsp70 protein; 100.0 2.8E-85 6.1E-90 744.4 60.1 552 1-643 46-602 (602)
16 PRK01433 hscA chaperone protei 100.0 2.9E-82 6.3E-87 701.7 62.0 500 16-638 71-574 (595)
17 KOG0103|consensus 100.0 3.5E-83 7.6E-88 671.3 46.2 557 1-644 48-647 (727)
18 COG0443 DnaK Molecular chapero 100.0 1.6E-81 3.4E-86 691.6 54.8 525 1-643 54-578 (579)
19 KOG0104|consensus 100.0 1.4E-72 3E-77 591.8 44.4 554 1-644 70-738 (902)
20 PRK11678 putative chaperone; P 100.0 8.9E-45 1.9E-49 389.1 33.2 296 1-413 88-448 (450)
21 PRK13928 rod shape-determining 100.0 3.7E-32 8.1E-37 285.3 28.7 219 173-413 97-324 (336)
22 PRK13929 rod-share determining 100.0 1.3E-31 2.9E-36 280.2 27.8 216 173-410 100-324 (335)
23 PRK13927 rod shape-determining 100.0 9.4E-29 2E-33 259.9 25.9 219 172-412 97-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 2.5E-28 5.5E-33 256.2 27.4 218 173-412 100-327 (333)
25 TIGR02529 EutJ ethanolamine ut 100.0 2.4E-28 5.3E-33 242.1 18.8 204 63-408 35-238 (239)
26 PRK13930 rod shape-determining 100.0 3.4E-27 7.3E-32 248.5 25.1 233 158-412 87-328 (335)
27 PRK15080 ethanolamine utilizat 99.9 2.1E-25 4.5E-30 225.2 21.7 176 175-410 92-267 (267)
28 TIGR01174 ftsA cell division p 99.9 2.4E-23 5.2E-28 221.7 24.7 307 62-409 42-371 (371)
29 PRK09472 ftsA cell division pr 99.9 5.6E-23 1.2E-27 221.3 26.6 309 64-411 51-387 (420)
30 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 2.2E-23 4.7E-28 213.1 19.1 219 170-410 92-319 (326)
31 COG0849 ftsA Cell division ATP 99.9 1.5E-21 3.4E-26 204.1 19.7 312 63-413 48-381 (418)
32 COG1077 MreB Actin-like ATPase 99.9 8E-21 1.7E-25 186.2 20.0 223 170-414 100-333 (342)
33 COG4820 EutJ Ethanolamine util 99.5 3.8E-15 8.2E-20 135.4 3.6 205 145-409 66-271 (277)
34 TIGR01175 pilM type IV pilus a 99.3 2.2E-10 4.9E-15 121.3 22.4 187 172-410 134-347 (348)
35 PF11104 PilM_2: Type IV pilus 99.2 6.4E-10 1.4E-14 117.1 20.3 186 174-410 129-339 (340)
36 cd00012 ACTIN Actin; An ubiqui 99.2 3.6E-11 7.8E-16 128.5 9.7 219 171-412 95-347 (371)
37 PRK13917 plasmid segregation p 99.2 1.7E-10 3.7E-15 121.0 13.8 209 171-415 110-339 (344)
38 smart00268 ACTIN Actin. ACTIN 99.1 1.1E-10 2.5E-15 124.8 9.2 219 171-411 95-346 (373)
39 TIGR03739 PRTRC_D PRTRC system 99.0 2.2E-09 4.8E-14 111.9 13.0 207 170-410 101-318 (320)
40 KOG0100|consensus 99.0 9.9E-11 2.1E-15 117.4 2.7 54 105-159 188-241 (663)
41 PF00022 Actin: Actin; InterP 98.9 2.3E-08 4.9E-13 107.9 13.2 226 170-411 93-366 (393)
42 COG0443 DnaK Molecular chapero 98.8 2.3E-09 4.9E-14 119.5 4.9 71 103-184 134-204 (579)
43 PTZ00280 Actin-related protein 98.8 5.9E-08 1.3E-12 105.0 13.1 204 171-388 102-337 (414)
44 KOG0103|consensus 98.8 3.8E-08 8.3E-13 106.0 10.6 147 135-292 101-258 (727)
45 PTZ00186 heat shock 70 kDa pre 98.7 1.1E-08 2.4E-13 115.8 4.9 58 102-161 173-230 (657)
46 PF06406 StbA: StbA protein; 98.7 7.3E-08 1.6E-12 100.3 9.6 174 200-407 141-316 (318)
47 PRK05183 hscA chaperone protei 98.7 7.1E-08 1.5E-12 109.2 9.9 88 68-161 132-219 (616)
48 PRK01433 hscA chaperone protei 98.7 1.8E-08 3.9E-13 113.0 5.0 60 100-161 152-211 (595)
49 PRK13410 molecular chaperone D 98.6 2.4E-08 5.1E-13 113.5 5.0 60 100-161 146-205 (668)
50 PTZ00009 heat shock 70 kDa pro 98.6 2.6E-08 5.5E-13 113.6 5.0 59 102-160 153-211 (653)
51 TIGR01991 HscA Fe-S protein as 98.6 2.8E-08 6E-13 112.2 4.8 61 99-161 139-199 (599)
52 PRK13411 molecular chaperone D 98.6 2.9E-08 6.2E-13 113.1 4.8 60 100-160 144-203 (653)
53 PTZ00004 actin-2; Provisional 98.6 2.4E-07 5.2E-12 99.0 11.2 216 170-411 100-351 (378)
54 PTZ00400 DnaK-type molecular c 98.6 3.8E-08 8.3E-13 112.2 5.0 60 100-161 185-244 (663)
55 TIGR00241 CoA_E_activ CoA-subs 98.6 7.8E-07 1.7E-11 89.3 13.5 168 204-408 74-247 (248)
56 PTZ00281 actin; Provisional 98.6 2.8E-07 6.1E-12 98.3 10.7 216 170-411 100-349 (376)
57 PRK00290 dnaK molecular chaper 98.6 4.7E-08 1E-12 111.3 5.0 61 99-161 143-203 (627)
58 COG4972 PilM Tfp pilus assembl 98.6 4.6E-06 1E-10 83.1 18.1 157 185-387 149-311 (354)
59 PLN03184 chloroplast Hsp70; Pr 98.5 6E-08 1.3E-12 110.6 5.0 59 100-160 183-241 (673)
60 TIGR02350 prok_dnaK chaperone 98.5 6.3E-08 1.4E-12 109.8 5.0 61 100-161 141-201 (595)
61 KOG0102|consensus 98.5 3.6E-08 7.8E-13 103.2 2.4 57 103-161 174-230 (640)
62 PTZ00452 actin; Provisional 98.5 1.2E-06 2.7E-11 93.2 13.5 216 170-411 99-348 (375)
63 PTZ00466 actin-like protein; P 98.5 9.9E-07 2.1E-11 94.1 12.6 218 170-411 105-353 (380)
64 PRK13927 rod shape-determining 98.5 5.4E-07 1.2E-11 94.9 10.4 88 69-159 77-164 (334)
65 CHL00094 dnaK heat shock prote 98.5 9.6E-08 2.1E-12 108.5 4.9 60 100-161 146-205 (621)
66 KOG0101|consensus 98.5 1.3E-07 2.9E-12 102.8 5.1 58 103-160 157-214 (620)
67 KOG0104|consensus 98.5 4.2E-07 9.1E-12 98.6 8.7 82 158-248 145-226 (902)
68 PRK13930 rod shape-determining 98.4 1.7E-06 3.6E-11 91.3 11.9 91 67-159 78-168 (335)
69 PF00012 HSP70: Hsp70 protein; 98.4 2.3E-07 5E-12 105.9 5.5 88 67-159 117-204 (602)
70 PF07520 SrfB: Virulence facto 98.4 5.7E-05 1.2E-09 86.3 22.5 84 325-414 730-836 (1002)
71 COG1077 MreB Actin-like ATPase 98.3 3.6E-06 7.7E-11 83.9 9.9 93 63-157 74-167 (342)
72 PF08841 DDR: Diol dehydratase 98.1 4E-05 8.6E-10 74.6 12.6 190 195-410 106-329 (332)
73 PF06723 MreB_Mbl: MreB/Mbl pr 98.1 9.7E-06 2.1E-10 83.6 8.0 93 64-158 68-160 (326)
74 TIGR03192 benz_CoA_bzdQ benzoy 98.0 0.00031 6.8E-09 70.7 18.0 70 338-412 218-288 (293)
75 PRK13929 rod-share determining 98.0 8.4E-06 1.8E-10 85.7 6.5 92 66-159 73-166 (335)
76 KOG0679|consensus 97.9 0.00012 2.6E-09 74.2 12.7 96 171-277 106-202 (426)
77 COG5277 Actin and related prot 97.9 0.00012 2.6E-09 78.9 13.3 99 170-277 105-204 (444)
78 COG1924 Activator of 2-hydroxy 97.9 0.00062 1.3E-08 69.6 16.6 198 184-412 170-390 (396)
79 TIGR02261 benz_CoA_red_D benzo 97.9 0.00054 1.2E-08 68.0 15.6 71 337-410 188-262 (262)
80 TIGR02259 benz_CoA_red_A benzo 97.8 0.00035 7.5E-09 72.3 13.8 179 203-410 249-432 (432)
81 TIGR03286 methan_mark_15 putat 97.8 0.00029 6.3E-09 73.7 12.8 70 337-411 332-402 (404)
82 PRK13928 rod shape-determining 97.8 3.3E-05 7.2E-10 81.3 5.9 96 63-160 69-164 (336)
83 TIGR02529 EutJ ethanolamine ut 97.6 6.4E-05 1.4E-09 74.8 4.3 49 104-159 76-124 (239)
84 TIGR00904 mreB cell shape dete 97.5 0.00016 3.4E-09 76.1 6.1 90 68-159 77-166 (333)
85 PRK13317 pantothenate kinase; 97.3 0.0049 1.1E-07 62.5 13.6 48 364-411 223-273 (277)
86 PRK10719 eutA reactivating fac 97.3 0.0012 2.5E-08 70.3 9.2 75 185-269 98-184 (475)
87 PRK11678 putative chaperone; P 97.2 0.00027 5.9E-09 76.8 4.2 57 103-161 171-227 (450)
88 KOG0797|consensus 97.2 0.0037 7.9E-08 65.9 11.9 93 173-276 229-322 (618)
89 COG4820 EutJ Ethanolamine util 97.2 0.00021 4.5E-09 66.1 2.5 81 70-157 74-154 (277)
90 COG4457 SrfB Uncharacterized p 96.9 0.18 3.8E-06 55.3 21.3 81 328-414 745-848 (1014)
91 PF02782 FGGY_C: FGGY family o 96.8 0.0022 4.8E-08 61.9 6.2 76 335-412 120-196 (198)
92 KOG0677|consensus 96.8 0.04 8.7E-07 53.3 14.2 195 170-387 100-318 (389)
93 PF14450 FtsA: Cell division p 96.7 0.0038 8.1E-08 55.0 6.1 48 227-274 1-52 (120)
94 KOG0676|consensus 96.4 0.021 4.5E-07 59.7 10.3 92 171-276 99-192 (372)
95 COG1069 AraB Ribulose kinase [ 96.2 0.071 1.5E-06 57.5 12.8 182 226-415 269-481 (544)
96 TIGR01315 5C_CHO_kinase FGGY-f 96.1 0.017 3.7E-07 64.9 8.5 85 329-415 409-493 (541)
97 PRK15027 xylulokinase; Provisi 96.0 0.016 3.5E-07 64.3 7.5 75 337-415 360-437 (484)
98 PLN02669 xylulokinase 96.0 0.02 4.3E-07 64.5 8.3 72 338-412 421-492 (556)
99 PRK15080 ethanolamine utilizat 95.8 0.012 2.6E-07 59.7 5.1 88 64-158 63-150 (267)
100 PRK04123 ribulokinase; Provisi 95.2 0.04 8.7E-07 62.2 7.2 77 337-415 412-489 (548)
101 smart00842 FtsA Cell division 95.2 0.095 2.1E-06 50.0 8.7 143 62-214 41-186 (187)
102 TIGR01312 XylB D-xylulose kina 95.2 0.055 1.2E-06 60.0 8.0 78 336-415 362-440 (481)
103 PRK00047 glpK glycerol kinase; 95.1 0.052 1.1E-06 60.5 7.7 78 336-415 375-453 (498)
104 PTZ00294 glycerol kinase-like 95.1 0.055 1.2E-06 60.4 7.7 77 337-415 379-456 (504)
105 TIGR02628 fuculo_kin_coli L-fu 95.1 0.049 1.1E-06 60.1 7.1 76 336-415 365-443 (465)
106 TIGR01234 L-ribulokinase L-rib 95.0 0.056 1.2E-06 60.8 7.7 73 338-415 410-486 (536)
107 KOG2517|consensus 95.0 0.071 1.5E-06 57.8 8.0 79 336-416 386-465 (516)
108 TIGR01311 glycerol_kin glycero 95.0 0.049 1.1E-06 60.6 7.1 78 336-415 371-449 (493)
109 TIGR00555 panK_eukar pantothen 94.9 0.33 7.2E-06 49.1 12.0 47 362-408 229-278 (279)
110 PRK10331 L-fuculokinase; Provi 94.9 0.06 1.3E-06 59.5 7.2 77 337-415 362-439 (470)
111 PRK11031 guanosine pentaphosph 94.8 0.34 7.5E-06 53.7 13.0 80 185-270 92-171 (496)
112 PLN02295 glycerol kinase 94.6 0.082 1.8E-06 59.1 7.4 78 336-415 379-462 (512)
113 TIGR01314 gntK_FGGY gluconate 94.6 0.082 1.8E-06 59.0 7.3 75 336-415 373-451 (505)
114 TIGR02627 rhamnulo_kin rhamnul 94.4 0.099 2.1E-06 57.5 7.5 50 363-415 387-436 (454)
115 KOG2531|consensus 94.4 0.13 2.8E-06 54.1 7.5 57 354-412 433-489 (545)
116 PRK10939 autoinducer-2 (AI-2) 94.2 0.11 2.4E-06 58.2 7.3 75 336-415 381-459 (520)
117 PRK10640 rhaB rhamnulokinase; 94.1 0.12 2.5E-06 57.2 7.2 50 363-415 375-424 (471)
118 KOG0680|consensus 93.9 0.5 1.1E-05 47.6 10.2 98 170-274 92-197 (400)
119 PLN02666 5-oxoprolinase 93.7 10 0.00023 46.7 22.9 78 330-410 454-532 (1275)
120 KOG0681|consensus 92.8 0.096 2.1E-06 56.0 3.7 66 347-412 540-614 (645)
121 COG1070 XylB Sugar (pentulose 92.4 0.56 1.2E-05 52.3 9.3 80 331-413 371-450 (502)
122 COG0248 GppA Exopolyphosphatas 91.3 1.5 3.2E-05 48.2 10.8 58 186-243 90-147 (492)
123 PF07318 DUF1464: Protein of u 91.1 3.5 7.6E-05 42.7 12.5 54 362-416 259-319 (343)
124 PF02541 Ppx-GppA: Ppx/GppA ph 90.4 0.82 1.8E-05 46.8 7.5 80 185-270 72-151 (285)
125 PF01869 BcrAD_BadFG: BadF/Bad 90.2 0.95 2.1E-05 45.9 7.7 71 337-410 197-271 (271)
126 COG0145 HyuA N-methylhydantoin 89.0 3.1 6.6E-05 47.6 11.1 45 198-243 252-296 (674)
127 PRK10854 exopolyphosphatase; P 89.0 1.4 3E-05 49.2 8.3 80 185-270 97-176 (513)
128 PRK09472 ftsA cell division pr 88.1 1.8 3.8E-05 47.1 8.3 52 107-160 170-221 (420)
129 COG3426 Butyrate kinase [Energ 87.9 20 0.00043 35.9 14.2 49 360-408 293-344 (358)
130 COG0554 GlpK Glycerol kinase [ 87.6 1.6 3.6E-05 46.7 7.3 78 336-415 374-452 (499)
131 PF01968 Hydantoinase_A: Hydan 87.0 0.52 1.1E-05 48.4 3.2 64 342-408 220-283 (290)
132 TIGR03281 methan_mark_12 putat 86.8 17 0.00038 36.9 13.5 174 205-415 129-314 (326)
133 PF03702 UPF0075: Uncharacteri 86.6 2.5 5.3E-05 44.7 8.0 74 336-412 260-337 (364)
134 PF02543 CmcH_NodU: Carbamoylt 86.5 48 0.001 35.2 18.5 82 329-415 132-216 (360)
135 TIGR00744 ROK_glcA_fam ROK fam 85.1 50 0.0011 34.1 21.7 45 196-242 96-140 (318)
136 TIGR03706 exo_poly_only exopol 84.7 9.7 0.00021 39.3 11.3 71 192-270 93-164 (300)
137 COG2377 Predicted molecular ch 84.6 14 0.00029 38.6 11.9 55 359-413 286-344 (371)
138 smart00268 ACTIN Actin. ACTIN 83.8 3.7 8.1E-05 43.8 8.1 83 65-157 72-157 (373)
139 cd00012 ACTIN Actin; An ubiqui 83.5 3.7 8.1E-05 43.7 7.9 80 68-157 75-157 (371)
140 PRK14878 UGMP family protein; 82.9 33 0.00072 35.8 14.4 24 364-387 242-265 (323)
141 PRK09604 UGMP family protein; 82.3 69 0.0015 33.5 17.9 53 363-415 254-311 (332)
142 PLN02920 pantothenate kinase 1 80.9 26 0.00057 37.1 12.5 49 362-410 296-350 (398)
143 PRK09585 anmK anhydro-N-acetyl 80.0 9 0.0002 40.4 8.9 70 339-412 265-338 (365)
144 TIGR01174 ftsA cell division p 79.6 2.2 4.7E-05 45.6 4.4 56 102-159 157-212 (371)
145 PF06277 EutA: Ethanolamine ut 77.4 5.1 0.00011 43.3 6.2 38 223-266 141-178 (473)
146 PTZ00340 O-sialoglycoprotein e 77.0 24 0.00053 36.9 11.0 40 344-388 249-288 (345)
147 PF03630 Fumble: Fumble ; Int 76.1 40 0.00086 35.4 12.3 49 362-410 286-340 (341)
148 PRK07058 acetate kinase; Provi 75.8 18 0.00039 38.4 9.6 43 342-388 301-344 (396)
149 PRK03011 butyrate kinase; Prov 73.3 6.8 0.00015 41.4 5.9 46 363-408 295-343 (358)
150 COG4012 Uncharacterized protei 71.0 13 0.00029 36.6 6.6 74 226-306 2-97 (342)
151 COG0533 QRI7 Metal-dependent p 69.9 65 0.0014 33.5 11.8 52 331-387 230-285 (342)
152 TIGR00143 hypF [NiFe] hydrogen 68.2 14 0.0003 42.9 7.4 49 363-411 658-711 (711)
153 PRK00180 acetate kinase A/prop 67.7 63 0.0014 34.7 11.6 44 342-388 305-349 (402)
154 PF08735 DUF1786: Putative pyr 66.8 61 0.0013 32.2 10.5 83 168-255 111-195 (254)
155 cd06007 R3H_DEXH_helicase R3H 66.3 16 0.00036 27.4 5.0 38 81-120 8-45 (59)
156 cd02640 R3H_NRF R3H domain of 64.9 17 0.00036 27.5 4.8 43 77-120 4-46 (60)
157 COG0849 ftsA Cell division ATP 64.6 36 0.00079 36.7 9.2 89 67-157 101-217 (418)
158 COG2192 Predicted carbamoyl tr 64.3 1.4E+02 0.0031 33.0 13.5 82 329-415 255-338 (555)
159 PRK00976 hypothetical protein; 63.5 26 0.00056 36.3 7.5 50 363-415 263-314 (326)
160 cd06007 R3H_DEXH_helicase R3H 62.0 25 0.00053 26.5 5.2 40 160-201 5-44 (59)
161 TIGR03722 arch_KAE1 universal 61.1 2E+02 0.0043 30.0 13.9 42 364-405 243-289 (322)
162 TIGR00016 ackA acetate kinase. 60.2 1.5E+02 0.0031 31.9 12.5 44 342-388 309-353 (404)
163 PF00349 Hexokinase_1: Hexokin 58.8 33 0.00072 33.2 7.0 55 223-279 61-118 (206)
164 TIGR03739 PRTRC_D PRTRC system 58.7 22 0.00047 37.0 6.3 73 88-160 101-184 (320)
165 TIGR03123 one_C_unchar_1 proba 57.9 7.7 0.00017 40.1 2.6 20 224-243 127-146 (318)
166 PRK09557 fructokinase; Reviewe 54.8 2.5E+02 0.0054 28.6 20.3 38 197-235 96-133 (301)
167 PRK12440 acetate kinase; Revie 54.1 1.9E+02 0.0042 30.9 12.2 43 342-388 303-346 (397)
168 PF00022 Actin: Actin; InterP 51.8 37 0.0008 36.3 6.8 83 66-156 72-155 (393)
169 TIGR03723 bact_gcp putative gl 48.8 46 0.00099 34.6 6.7 56 347-407 248-308 (314)
170 PRK09605 bifunctional UGMP fam 48.8 43 0.00093 37.7 7.0 52 364-415 246-302 (535)
171 cd02639 R3H_RRM R3H domain of 47.6 32 0.0007 25.9 3.8 30 91-120 17-46 (60)
172 cd02646 R3H_G-patch R3H domain 47.3 42 0.0009 25.0 4.5 43 75-120 2-44 (58)
173 cd02641 R3H_Smubp-2_like R3H d 46.4 56 0.0012 24.6 5.0 42 78-120 5-46 (60)
174 PRK12397 propionate kinase; Re 46.1 2.6E+02 0.0057 30.0 11.7 43 342-388 304-347 (404)
175 PF02685 Glucokinase: Glucokin 46.0 2.6E+02 0.0056 29.0 11.7 198 196-411 89-314 (316)
176 cd02640 R3H_NRF R3H domain of 45.5 70 0.0015 24.1 5.4 41 160-201 5-45 (60)
177 PRK09698 D-allose kinase; Prov 45.3 3.5E+02 0.0076 27.5 21.8 49 363-411 236-295 (302)
178 KOG0797|consensus 45.2 7.6 0.00016 41.9 0.2 75 62-136 195-275 (618)
179 PF14574 DUF4445: Domain of un 43.3 45 0.00098 35.9 5.7 53 335-387 55-107 (412)
180 PTZ00280 Actin-related protein 42.1 1.3E+02 0.0028 32.5 9.2 88 67-157 81-174 (414)
181 PF00480 ROK: ROK family; Int 41.1 1.7E+02 0.0037 27.0 8.9 41 201-242 94-134 (179)
182 KOG2708|consensus 39.2 3E+02 0.0064 26.9 9.7 75 329-408 224-300 (336)
183 PF13941 MutL: MutL protein 38.7 12 0.00027 40.6 0.6 40 203-243 227-266 (457)
184 PRK05082 N-acetylmannosamine k 38.1 1E+02 0.0023 31.3 7.4 48 363-410 233-286 (291)
185 PF14574 DUF4445: Domain of un 37.8 64 0.0014 34.8 5.8 85 325-410 290-375 (412)
186 PRK10972 Z-ring-associated pro 37.4 2.7E+02 0.0058 23.9 9.2 67 569-640 28-96 (109)
187 KOG2707|consensus 36.9 5.2E+02 0.011 27.1 18.1 216 158-388 88-330 (405)
188 TIGR00329 gcp_kae1 metallohydr 36.7 46 0.001 34.3 4.5 37 346-387 246-282 (305)
189 PF15290 Syntaphilin: Golgi-lo 36.4 1.6E+02 0.0036 29.4 7.7 27 561-587 80-106 (305)
190 PRK13310 N-acetyl-D-glucosamin 36.0 99 0.0021 31.7 6.9 39 197-236 96-134 (303)
191 COG4819 EutA Ethanolamine util 35.8 15 0.00033 37.5 0.7 38 223-266 143-180 (473)
192 PF03646 FlaG: FlaG protein; 35.0 61 0.0013 27.5 4.2 45 506-558 54-99 (107)
193 PF03484 B5: tRNA synthetase B 34.8 71 0.0015 24.8 4.2 59 16-75 7-66 (70)
194 PF00871 Acetate_kinase: Aceto 34.7 5.5E+02 0.012 27.5 12.2 43 342-387 302-345 (388)
195 COG1548 Predicted transcriptio 34.6 1.1E+02 0.0023 30.6 6.1 21 223-243 128-148 (330)
196 PLN00078 photosystem I reactio 34.5 1.5E+02 0.0031 24.8 5.9 14 602-615 108-121 (122)
197 COG1105 FruK Fructose-1-phosph 34.0 2.8E+02 0.0061 28.6 9.4 110 24-134 59-178 (310)
198 PF01968 Hydantoinase_A: Hydan 33.6 27 0.00059 35.7 2.2 42 200-243 54-95 (290)
199 COG4296 Uncharacterized protei 33.6 89 0.0019 27.5 4.8 22 607-628 90-112 (156)
200 COG3894 Uncharacterized metal- 33.4 1.2E+02 0.0027 33.1 6.8 47 225-271 164-210 (614)
201 PF03610 EIIA-man: PTS system 33.2 2.9E+02 0.0063 23.6 8.3 65 151-238 6-72 (116)
202 COG4012 Uncharacterized protei 32.6 4.3E+02 0.0094 26.5 9.8 85 178-274 186-273 (342)
203 PRK07157 acetate kinase; Provi 31.6 3.2E+02 0.0069 29.3 9.6 44 342-388 302-346 (400)
204 PF02970 TBCA: Tubulin binding 31.4 3E+02 0.0064 22.7 7.9 30 595-624 58-88 (90)
205 PRK12379 propionate/acetate ki 31.4 6.6E+02 0.014 27.0 12.0 42 342-387 300-342 (396)
206 PF08006 DUF1700: Protein of u 30.0 1.4E+02 0.0031 27.9 6.3 56 577-639 5-62 (181)
207 PLN02902 pantothenate kinase 29.9 2.9E+02 0.0062 32.8 9.5 49 362-411 345-400 (876)
208 PLN02377 3-ketoacyl-CoA syntha 29.3 1.3E+02 0.0029 33.3 6.7 54 335-388 165-219 (502)
209 KOG1385|consensus 28.9 46 0.001 35.3 2.8 20 224-243 212-231 (453)
210 TIGR02707 butyr_kinase butyrat 28.8 77 0.0017 33.5 4.6 46 363-408 293-341 (351)
211 PLN03170 chalcone synthase; Pr 28.7 1.5E+02 0.0032 32.0 6.8 48 341-388 105-153 (401)
212 PLN03173 chalcone synthase; Pr 28.7 1.6E+02 0.0034 31.6 7.0 47 342-388 102-149 (391)
213 PF07865 DUF1652: Protein of u 28.6 1.8E+02 0.004 22.6 5.4 50 507-557 15-66 (69)
214 KOG1794|consensus 28.0 6.7E+02 0.015 25.7 18.2 55 45-99 20-78 (336)
215 PF06008 Laminin_I: Laminin Do 27.6 3.2E+02 0.0069 27.4 8.7 50 595-644 152-211 (264)
216 PF04481 DUF561: Protein of un 27.5 3.4E+02 0.0074 26.4 8.0 105 93-201 17-148 (242)
217 PF00815 Histidinol_dh: Histid 27.5 2.1E+02 0.0046 30.7 7.5 49 170-218 136-185 (412)
218 cd02639 R3H_RRM R3H domain of 27.2 1.4E+02 0.003 22.5 4.4 29 173-201 17-45 (60)
219 COG2433 Uncharacterized conser 26.6 5.9E+02 0.013 28.8 10.7 62 564-632 448-509 (652)
220 PLN03172 chalcone synthase fam 26.5 1.7E+02 0.0038 31.4 6.9 49 340-388 100-149 (393)
221 PF14450 FtsA: Cell division p 26.0 14 0.00031 32.2 -1.3 60 68-131 46-118 (120)
222 TIGR01319 glmL_fam conserved h 25.6 43 0.00094 36.3 2.0 31 355-385 381-414 (463)
223 cd02641 R3H_Smubp-2_like R3H d 25.3 2E+02 0.0043 21.6 5.0 39 162-201 7-45 (60)
224 COG5026 Hexokinase [Carbohydra 24.9 87 0.0019 33.6 4.0 32 223-254 73-104 (466)
225 PRK08868 flagellar protein Fla 23.9 1.8E+02 0.0039 26.3 5.2 44 507-558 89-133 (144)
226 PF05957 DUF883: Bacterial pro 23.3 4.2E+02 0.0091 21.7 8.4 67 546-616 5-73 (94)
227 KOG3133|consensus 23.3 3.6E+02 0.0078 26.9 7.6 59 573-636 142-204 (267)
228 cd00327 cond_enzymes Condensin 23.1 3.2E+02 0.0068 26.8 7.8 44 346-389 11-56 (254)
229 PLN02939 transferase, transfer 23.1 5E+02 0.011 31.4 10.1 71 543-613 237-310 (977)
230 PLN03168 chalcone synthase; Pr 23.0 2E+02 0.0043 30.9 6.5 49 340-388 99-148 (389)
231 PTZ00004 actin-2; Provisional 22.8 2.9E+02 0.0063 29.4 7.8 79 68-156 81-162 (378)
232 PRK07738 flagellar protein Fla 22.1 2E+02 0.0043 25.0 5.0 44 507-558 64-108 (117)
233 KOG4001|consensus 21.9 5.4E+02 0.012 24.5 8.0 48 566-614 195-242 (259)
234 smart00787 Spc7 Spc7 kinetocho 21.9 7.6E+02 0.016 25.6 10.2 83 543-633 201-286 (312)
235 PTZ00323 NAD+ synthase; Provis 21.6 8.2E+02 0.018 25.1 10.3 36 62-100 22-57 (294)
236 cd02069 methionine_synthase_B1 20.6 7.8E+02 0.017 23.8 11.6 108 63-201 56-170 (213)
237 smart00874 B5 tRNA synthetase 20.4 1.9E+02 0.0042 22.1 4.4 31 16-46 7-37 (71)
238 PF08392 FAE1_CUT1_RppA: FAE1/ 20.0 2E+02 0.0043 29.4 5.3 44 345-388 86-130 (290)
No 1
>KOG0100|consensus
Probab=100.00 E-value=3.5e-127 Score=939.00 Aligned_cols=563 Identities=60% Similarity=0.974 Sum_probs=539.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEc-CceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK-GEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ev~a~~l~~l~~ 79 (655)
||.+|++|+..||+|||++.||||||.|+|+.||+++++|||++++.+++|.++|... |+.+.|+||||+||+|.++++
T Consensus 83 iGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe 162 (663)
T KOG0100|consen 83 IGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKE 162 (663)
T ss_pred hhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999987 668899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.||+|+|.++..+|+|||+||+
T Consensus 163 ~AEayLGkkv~~AVvTvPAYFN---------------------------------------------------------- 184 (663)
T KOG0100|consen 163 TAEAYLGKKVTHAVVTVPAYFN---------------------------------------------------------- 184 (663)
T ss_pred HHHHHhCCcccceEEecchhcc----------------------------------------------------------
Confidence 9999999999988777666655
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+.||+++++|..+|||+++++|+||+|||++|++++. ..+.++||||+||||||+
T Consensus 185 ------------------------DAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTFDV 239 (663)
T KOG0100|consen 185 ------------------------DAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTFDV 239 (663)
T ss_pred ------------------------hHHHhhhcccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceEEE
Confidence 5555666666777788888899999999999999876 467899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+++| +|+|+++.||.+|||+|||.++++|+.+.++++++.|++.+.+++++|+.+||++|+.||++.+..+.|++
T Consensus 240 SlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS 318 (663)
T KOG0100|consen 240 SLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIES 318 (663)
T ss_pred EEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeee
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+++|.||+-++||..||++..+++..++.+++++|+++++.+.+|+.|+|||||+|||.||++|+++|+|++++..+|||
T Consensus 319 ~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPd 398 (663)
T KOG0100|consen 319 LFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPD 398 (663)
T ss_pred ccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||.+|..||| .....++++.|++|.++||++.+|.|..+||||+.||++++..|+|+.|+|+.+.|.+|+|+
T Consensus 399 EAVAYGAAVQaGvlsG--ee~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGE 476 (663)
T KOG0100|consen 399 EAVAYGAAVQAGVLSG--EEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGE 476 (663)
T ss_pred HHHHhhhhhhhccccc--ccCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeecc
Confidence 9999999999999999 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
++++++|+++|.|.++||||+|+|.|+|+|+|++|.||+|+|++.|+.||+..+++|+++.++||+++|++|.+++++|.
T Consensus 477 R~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFA 556 (663)
T KOG0100|consen 477 RPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFA 556 (663)
T ss_pred ccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSG---SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~---~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
++|+..+++.++||+||+|.|.+++.+.+.. ..+++++++.+...+++..+||++|++|++++|++++++|+.+++|
T Consensus 557 eeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~P 636 (663)
T KOG0100|consen 557 EEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQP 636 (663)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCCC
Q psy3270 637 IMTKLHQA-GGKGP 649 (655)
Q Consensus 637 i~~r~~e~-~~~~~ 649 (655)
|.++.++. ||.++
T Consensus 637 iisklY~~ag~~~~ 650 (663)
T KOG0100|consen 637 IISKLYGGAGGAPE 650 (663)
T ss_pred HHHHHhhhcCCCCC
Confidence 99998885 66544
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.1e-100 Score=856.83 Aligned_cols=561 Identities=70% Similarity=1.070 Sum_probs=522.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|+.++.+||++|++++|||||++|+|+.++..+++|||.++ ..++.+.+.+.+.++.+.|+|++|+|++|+++++
T Consensus 51 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~ 130 (653)
T PTZ00009 51 IGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKE 130 (653)
T ss_pred EcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999988 4678888999998877899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|||||+
T Consensus 131 ~ae~~~g~~v~~~VItVPa------------------------------------------------------------- 149 (653)
T PTZ00009 131 IAEAYLGKQVKDAVVTVPA------------------------------------------------------------- 149 (653)
T ss_pred HHHHHhCCCcceeEEEeCC-------------------------------------------------------------
Confidence 9999998887777555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+|++.||+++++||+.||+++++|++||+|||++|+.......+.+++|||+||||||+
T Consensus 150 ---------------------~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dv 208 (653)
T PTZ00009 150 ---------------------YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDV 208 (653)
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEE
Confidence 55667777788888888899999999999999999986543356789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH-KKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~ 318 (655)
|++++.++ .++++++.|+.++||++||..|++|+.++|..++ +.++..+++.+.+|+.+||++|+.||.+..+.+.++
T Consensus 209 sv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~ 287 (653)
T PTZ00009 209 SLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID 287 (653)
T ss_pred EEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 99999887 9999999999999999999999999999998876 467778899999999999999999999999999999
Q ss_pred cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 319 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
+++++.++.++|||++|+++|+|++++++.+|+++|+.++++..+|+.|+||||+||+|+|+++|+++|++..+...+||
T Consensus 288 ~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~np 367 (653)
T PTZ00009 288 SLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINP 367 (653)
T ss_pred eccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999977788889999
Q ss_pred hhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEec
Q psy3270 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEG 478 (655)
Q Consensus 399 ~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g 478 (655)
++|||+|||++|+++++...+.++++.+.|++|++||++..++.+.+|||+|++||++++.+|++..|+|+.+.|.||||
T Consensus 368 deaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg 447 (653)
T PTZ00009 368 DEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG 447 (653)
T ss_pred chHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec
Confidence 99999999999999998655677889999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHh
Q psy3270 479 ERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558 (655)
Q Consensus 479 ~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~ 558 (655)
++..+.+|..||++.|.++|+.+.|.+.|+++|++|.||+|+|++.+..||+...+.+.....+|++++++++++.+.++
T Consensus 448 e~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~ 527 (653)
T PTZ00009 448 ERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKY 527 (653)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999888766789999999999999999
Q ss_pred hhhcHHHHHHHHHHhhHHHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 559 KAEDDKQRERVAAKNKLESYAFAVKQAAEDS-G-SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 559 ~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~-~-~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
..+|+..+++.++||+||+|||++|++|.++ . .++++++++++.+.++++++|||++.+++.++|++|+++|+++++|
T Consensus 528 ~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~p 607 (653)
T PTZ00009 528 KAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNP 607 (653)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999753 3 7899999999999999999999988889999999999999999999
Q ss_pred HHHHHHhc
Q psy3270 637 IMTKLHQA 644 (655)
Q Consensus 637 i~~r~~e~ 644 (655)
+..|++..
T Consensus 608 i~~r~~~~ 615 (653)
T PTZ00009 608 IMTKMYQA 615 (653)
T ss_pred HHHHHHhh
Confidence 99998754
No 3
>KOG0101|consensus
Probab=100.00 E-value=8.7e-99 Score=799.84 Aligned_cols=562 Identities=72% Similarity=1.084 Sum_probs=538.4
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++|..+||.||++++|||||+.|+||.++.++++|||.+. +.++.+.+.+.++++.+.|+|+++++++|.++++
T Consensus 54 vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke 133 (620)
T KOG0101|consen 54 IGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKE 133 (620)
T ss_pred hhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHH
Confidence 478999999999999999999999999999999999999999999 4567899999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|+|||+|
T Consensus 134 ~Ae~~Lg~~v~~aviTVPa~------------------------------------------------------------ 153 (620)
T KOG0101|consen 134 TAEAYLGKTVKKAVVTVPAY------------------------------------------------------------ 153 (620)
T ss_pred HHHHHhcCceeeEEEEecCC------------------------------------------------------------
Confidence 99999999888886665555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++.||+++.+|+.+||++++++++||+|||++|++.+......+++|+|+||||||+
T Consensus 154 ----------------------F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdv 211 (620)
T KOG0101|consen 154 ----------------------FNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDV 211 (620)
T ss_pred ----------------------cCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceee
Confidence 5667777778888888888899999999999999988776677899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+.+| .+.++++.||.++||++||+.+++|+..+|+++++.++..+++++++|+.+||.+|+.||....+++.+++
T Consensus 212 s~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vds 290 (620)
T KOG0101|consen 212 SVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDS 290 (620)
T ss_pred eeEEeccc-hhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccch
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+.+|.++...+||.+|+.++.+++.++..++..+|+++++++.+|+.|+||||+||+|.++..++++|+++.+..++|||
T Consensus 291 L~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpD 370 (620)
T KOG0101|consen 291 LYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPD 370 (620)
T ss_pred hhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
++||+|||++||.+++.....+.++.+.|+.|.++||++.++.|.++|++|+.+|++++.+|+|+.|||+.+.|.||+|+
T Consensus 371 eavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEge 450 (620)
T KOG0101|consen 371 EAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGE 450 (620)
T ss_pred HHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEecc
Confidence 99999999999999998777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+++|.++|.|.|.|+||+|.|.+.|+++|.+|.||+|.|++.+++|||...++|.+..+.||.++|+++....++++
T Consensus 451 r~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~ 530 (620)
T KOG0101|consen 451 RAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYK 530 (620)
T ss_pred ccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|...+.+..++|.||+|+|.++..+++....++++++.++.+.++++..||+.+..+.+++|++|.++|+..+.||+.
T Consensus 531 ~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~ 610 (620)
T KOG0101|consen 531 AEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIIS 610 (620)
T ss_pred ccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999987667899999999999999999999999888899999999999999999999
Q ss_pred HHHhcC
Q psy3270 640 KLHQAG 645 (655)
Q Consensus 640 r~~e~~ 645 (655)
++++.|
T Consensus 611 ~~~~~~ 616 (620)
T KOG0101|consen 611 KLYQGG 616 (620)
T ss_pred hhhccC
Confidence 998873
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.4e-94 Score=812.76 Aligned_cols=549 Identities=48% Similarity=0.781 Sum_probs=503.0
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||++|++++|||||++++|+. ...++|||.++. .++...+.+ ++ ..|+|++|+|++|+++++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~i--~~--~~~~peei~a~iL~~lk~ 123 (653)
T PRK13411 50 VGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQI--RG--RNYTPQEISAMILQKLKQ 123 (653)
T ss_pred EcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEEE--CC--EEECHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999864 456899999984 455444544 44 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 124 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 140 (653)
T PRK13411 124 DAEAYLGEPVTQAVITV--------------------------------------------------------------- 140 (653)
T ss_pred HHHHHhCCCcceEEEEE---------------------------------------------------------------
Confidence 99999888777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.|||++++|++||+|||++|+.... ..+.++||||+||||||+
T Consensus 141 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dv 200 (653)
T PRK13411 141 -------------------PAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDV 200 (653)
T ss_pred -------------------CCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEE
Confidence 555666777788888888899999999999999999988654 246789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 201 si~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~ 279 (653)
T PRK13411 201 SILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPF 279 (653)
T ss_pred EEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999887 99999999999999999999999999999998888888889999999999999999999999999888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++.+.|||++|+++|+|+++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|++.|++..+..+
T Consensus 280 ~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~ 359 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRS 359 (653)
T ss_pred eccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCC
Confidence 543 3568899999999999999999999999999999999999999999999999999999999999977788889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++. ++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+
T Consensus 360 ~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v 435 (653)
T PRK13411 360 VNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHV 435 (653)
T ss_pred CCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEE
Confidence 999999999999999999873 5789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||.+.+.++|+.+.|.++|+|+|++|.||+|+|++.+..||+...+.+.+. .+||+++++++++++
T Consensus 436 ~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~ 514 (653)
T PRK13411 436 LQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEA 514 (653)
T ss_pred EEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888764 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+.++++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +++.++|++++++|++.+.
T Consensus 515 ~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~ 593 (653)
T PRK13411 515 EKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALL 593 (653)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976448899999999999999999999984 4688999999999999999
Q ss_pred HHHHHHHhcC
Q psy3270 636 PIMTKLHQAG 645 (655)
Q Consensus 636 ~i~~r~~e~~ 645 (655)
++..++++++
T Consensus 594 ~i~~~~y~~~ 603 (653)
T PRK13411 594 AIGAEVYQQG 603 (653)
T ss_pred HHHHHHHhhc
Confidence 9999988774
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=2.4e-94 Score=804.03 Aligned_cols=548 Identities=45% Similarity=0.738 Sum_probs=501.1
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.+||.+|++++|||||++++|+.++..++.|||.++. .++...+. .. ..+.|+|++|++++|+++++
T Consensus 74 vG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~--~~-~~~~~speeisa~iL~~Lk~ 150 (657)
T PTZ00186 74 VGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ--DG-NGKQYSPSQIGAFVLEKMKE 150 (657)
T ss_pred EcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEE--eC-CCeEEcHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999984 44544433 22 23789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++|||||+
T Consensus 151 ~Ae~~lg~~v~~aVITVPa------------------------------------------------------------- 169 (657)
T PTZ00186 151 TAENFLGHKVSNAVVTCPA------------------------------------------------------------- 169 (657)
T ss_pred HHHHHhCCccceEEEEECC-------------------------------------------------------------
Confidence 9999998888777555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+|++.||+++++|++.|||++++|++||+|||++|+.... .+.+++|||+||||||+
T Consensus 170 ---------------------yF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~Dv 226 (657)
T PTZ00186 170 ---------------------YFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDI 226 (657)
T ss_pred ---------------------CCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEE
Confidence 4566777778888888888889999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||+|||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.
T Consensus 227 Sil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~ 305 (657)
T PTZ00186 227 SVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPF 305 (657)
T ss_pred EEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEee
Confidence 99999888 99999999999999999999999999999999999888888999999999999999999999999888876
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++.+.|||++|+++|+|++++++.+++++|+++++++.+|+.|+||||+||||.|+++|+++| +..+...
T Consensus 306 i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~ 384 (657)
T PTZ00186 306 ITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRG 384 (657)
T ss_pred eccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCcccc
Confidence 5432 4578999999999999999999999999999999999999999999999999999999999999 5666788
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++. ++++.+.|++|+|||+++.+|.+.+|||||++||++++..|++..|||+.+.|.|
T Consensus 385 ~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i 460 (657)
T PTZ00186 385 VNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV 460 (657)
T ss_pred CCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEE
Confidence 999999999999999999873 4678999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+|++.+..||++..++|... .+|++++++++.++.
T Consensus 461 ~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~ 539 (657)
T PTZ00186 461 FQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDS 539 (657)
T ss_pred EEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
+++..+|+..+++.+++|++|++++.++..+.+. ..+++++++.+.+.++++++||.. .+.+.+.+++++++|++.+.
T Consensus 540 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~ 617 (657)
T PTZ00186 540 EQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVM 617 (657)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999643 468899999999999999999984 34567899999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
++..++++.
T Consensus 618 ~~~~~~~~~ 626 (657)
T PTZ00186 618 ECGRTEYQQ 626 (657)
T ss_pred HHHHHHHhh
Confidence 999887653
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.6e-94 Score=809.38 Aligned_cols=548 Identities=44% Similarity=0.739 Sum_probs=501.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++++.+||++|++++|||||+++++ ++...+++||.+.. ++|...+.+...+ +.|+|++|+|++|++|++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~ 125 (668)
T PRK13410 50 VGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLAD 125 (668)
T ss_pred ECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999976 56667899999984 5666666654443 789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++||||
T Consensus 126 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 142 (668)
T PRK13410 126 DASRYLGEPVTGAVITV--------------------------------------------------------------- 142 (668)
T ss_pred HHHHHhCCCcceEEEEE---------------------------------------------------------------
Confidence 99999988877775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.||++++++|+||+|||++|+.... .+.++||||+||||||+
T Consensus 143 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dv 201 (668)
T PRK13410 143 -------------------PAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDV 201 (668)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEE
Confidence 555566777778888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++|+++.|+.++||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 202 sv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~ 280 (668)
T PRK13410 202 SLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPF 280 (668)
T ss_pred EEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999888 99999999999999999999999999999999998888888999999999999999999999988888887
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++...|||++|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+...
T Consensus 281 ~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~ 359 (668)
T PRK13410 281 ITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQN 359 (668)
T ss_pred eecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccC
Confidence 6532 4678899999999999999999999999999999999999999999999999999999999999 5678888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ .++++.+.|++|++||+++.+|.+.++||+|++||++++.+|++..|+|+.+.|.+
T Consensus 360 ~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v 435 (668)
T PRK13410 360 VNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV 435 (668)
T ss_pred CCCchHHHHhHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEE
Confidence 99999999999999999988 35789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..++|... .+||+++++++++++
T Consensus 436 ~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~ 514 (668)
T PRK13410 436 WQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEA 514 (668)
T ss_pred EeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888765 679999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhc---C-CCCCHHHHHHHHHHHHHHHHHhccCC-ccCHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS---G-SKLSDADKTSVSQACSATLTWLEGNS-LAEKEEFEDRLKTL 630 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~---~-~~~~~~e~~~l~~~l~e~~~WL~~~~-~a~~~~~~~kl~~L 630 (655)
.+|..+|+..+++.++||+||+|+|.+|++|.+. . .++++++++++.+.++++++||+++. +...+.|+++++.|
T Consensus 515 ~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l 594 (668)
T PRK13410 515 EAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEAL 594 (668)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999752 2 77899999999999999999999874 46677899999999
Q ss_pred HHHHHHHHHHHHh
Q psy3270 631 QQTCTPIMTKLHQ 643 (655)
Q Consensus 631 ~~~~~~i~~r~~e 643 (655)
+.+..++..|+.+
T Consensus 595 ~~~~~~~~~~~~~ 607 (668)
T PRK13410 595 YGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999988
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=3.4e-94 Score=809.77 Aligned_cols=548 Identities=50% Similarity=0.823 Sum_probs=504.2
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++|+.++..+++|||.++. .+|...+.+ ++ +.|+|++|+|++|+++++
T Consensus 89 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~speel~a~iL~~lk~ 164 (663)
T PTZ00400 89 VGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--QG--KKYSPSQIGAFVLEKMKE 164 (663)
T ss_pred ECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE--CC--EEECHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999984 455555544 44 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 165 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 181 (663)
T PTZ00400 165 TAESYLGRKVKQAVITV--------------------------------------------------------------- 181 (663)
T ss_pred HHHHHhCCCCceEEEEE---------------------------------------------------------------
Confidence 99999988877775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++||+.||+++++|++||+|||++|+.... .+.+++|||+||||||+
T Consensus 182 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 240 (663)
T PTZ00400 182 -------------------PAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDI 240 (663)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--CCcEEEEEeCCCCeEEE
Confidence 555666777778888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 241 Sv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~ 319 (663)
T PTZ00400 241 SILEILGG-VFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPF 319 (663)
T ss_pred EEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEe
Confidence 99999887 99999999999999999999999999999999888888888999999999999999999999988888876
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+..+ .++.++|||++|+++|+|++++++.++.++|+++++.+.+|+.|+||||+||+|+|+++|+++| +.++...
T Consensus 320 ~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~ 398 (663)
T PTZ00400 320 ITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKG 398 (663)
T ss_pred eccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccC
Confidence 5433 4788999999999999999999999999999999999999999999999999999999999999 5677889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||+++||+|||++|+++++. .+++.+.|++|++||++..+|.+.++||+|+++|++++..|++..|+|+.+.|.|
T Consensus 399 ~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i 474 (663)
T PTZ00400 399 VNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKV 474 (663)
T ss_pred CCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEE
Confidence 999999999999999999872 5789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||++.|.++|+.+.|.+.|+|+|.+|.||+|+|++.+..+|+...+++... .+||+++++++.+++
T Consensus 475 ~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~ 553 (663)
T PTZ00400 475 FQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEA 553 (663)
T ss_pred EEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888765 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+..+++.++||+||+|+|.+|+.|.+....+++++++++.+.++++++||+++ +.++|++++++|++.+.
T Consensus 554 ~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~ 630 (663)
T PTZ00400 554 EEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASW 630 (663)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975337899999999999999999999986 57899999999999999
Q ss_pred HHHHHHHhcCC
Q psy3270 636 PIMTKLHQAGG 646 (655)
Q Consensus 636 ~i~~r~~e~~~ 646 (655)
++..++++.++
T Consensus 631 ~l~~k~y~~~~ 641 (663)
T PTZ00400 631 KISQQAYKQGN 641 (663)
T ss_pred HHHHHHHhhhc
Confidence 99998877643
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=7.9e-93 Score=798.84 Aligned_cols=546 Identities=48% Similarity=0.778 Sum_probs=499.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++| ++...+.|||.++. ++|...+.+...+ ..|+|+++++++|+++++
T Consensus 87 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~ 162 (673)
T PLN03184 87 VGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVD 162 (673)
T ss_pred ECHHHHHhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999976 56677889999984 4666666665555 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 163 ~ae~~lg~~v~~~VITV--------------------------------------------------------------- 179 (673)
T PLN03184 163 DASKFLNDKVTKAVITV--------------------------------------------------------------- 179 (673)
T ss_pred HHHHHhCCCCCeEEEEE---------------------------------------------------------------
Confidence 99999887777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++|++.||+++++|++||+|||++|+.... .+..+||||+||||||+
T Consensus 180 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dv 238 (673)
T PLN03184 180 -------------------PAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDV 238 (673)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEE
Confidence 555566777788888888899999999999999999998754 56789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.+++
T Consensus 239 Si~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~ 317 (673)
T PLN03184 239 SVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPF 317 (673)
T ss_pred EEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEe
Confidence 99999887 99999999999999999999999999999999999888889999999999999999999999998888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++...|||++|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++| +..+...
T Consensus 318 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~ 396 (673)
T PLN03184 318 ITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVT 396 (673)
T ss_pred eeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccc
Confidence 532 35788899999999999999999999999999999999999999999999999999999999999 5677888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+
T Consensus 397 ~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i 472 (673)
T PLN03184 397 VNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINV 472 (673)
T ss_pred cCcchHHHHHHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEE
Confidence 99999999999999999987 35678999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++....+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..|++...+++... .+||+++++++++++
T Consensus 473 ~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~ 551 (673)
T PLN03184 473 LQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEA 551 (673)
T ss_pred EeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888754 579999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++..+|+..+++.++||+||+|+|.+|++|.+..+++++++++++.+.++++++||+++ +.+.+++++++|.+.+.
T Consensus 552 ~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~ 628 (673)
T PLN03184 552 EKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVM 628 (673)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974337899999999999999999999986 56789999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
++..+++++
T Consensus 629 ~l~~~~~~~ 637 (673)
T PLN03184 629 QIGQSLYNQ 637 (673)
T ss_pred HHHHHHHhc
Confidence 999988766
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-91 Score=789.00 Aligned_cols=543 Identities=51% Similarity=0.837 Sum_probs=500.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|++++.++|++|++++|||||++ ++.++..+++|||.++. .+|...+. .+| +.|+|++|++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~~peel~a~iL~~lk~ 123 (627)
T PRK00290 50 VGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVE--IDG--KKYTPQEISAMILQKLKK 123 (627)
T ss_pred EcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEE--ECC--EEEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999 67788999999999995 34555444 455 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++++|.++.++|||
T Consensus 124 ~ae~~~g~~v~~~VIt---------------------------------------------------------------- 139 (627)
T PRK00290 124 DAEDYLGEKVTEAVIT---------------------------------------------------------------- 139 (627)
T ss_pred HHHHHhCCCCceEEEE----------------------------------------------------------------
Confidence 9999988777777555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||++|++.||+++++||+.||+++++|++||+|||++|+.... .+.++||||+||||||+
T Consensus 140 ------------------VPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dv 199 (627)
T PRK00290 140 ------------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDV 199 (627)
T ss_pred ------------------ECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEE
Confidence 5555667777788888888899999999999999999998754 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 200 sv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~ 278 (627)
T PRK00290 200 SILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPF 278 (627)
T ss_pred EEEEEeCC-eEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Confidence 99999887 99999999999999999999999999999999999888889999999999999999999999999988887
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++.+.|||++|+++|+|+++++..+|+++|+.+++++.+|+.|+||||+||+|+|++.|++.| +..+..+
T Consensus 279 ~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~ 357 (627)
T PRK00290 279 ITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKG 357 (627)
T ss_pred cccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcC
Confidence 653 25788999999999999999999999999999999999999999999999999999999999999 6778889
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+.+++ ..+++.+.|++|++||++..++.+.+|||+|+++|++++.+|++..|+|+.+.|.+
T Consensus 358 ~npdeava~GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v 433 (627)
T PRK00290 358 VNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHV 433 (627)
T ss_pred cCChHHHHHhHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEE
Confidence 99999999999999999987 35789999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||++.|.++|+.++|.++|+++|.+|.||+|+|++.+..+|+..++++... .+|+.++++++++++
T Consensus 434 ~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~ 512 (627)
T PRK00290 434 LQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDA 512 (627)
T ss_pred EEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988765 569999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++.++|+..+++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +.++|++++++|+++++
T Consensus 513 ~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~ 589 (627)
T PRK00290 513 EANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQ 589 (627)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974337889999999999999999999986 67899999999999999
Q ss_pred HHHHHHHh
Q psy3270 636 PIMTKLHQ 643 (655)
Q Consensus 636 ~i~~r~~e 643 (655)
++..|+++
T Consensus 590 ~~~~~~~~ 597 (627)
T PRK00290 590 KLGEAMYQ 597 (627)
T ss_pred HHHHHHHh
Confidence 99999876
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.9e-91 Score=782.83 Aligned_cols=555 Identities=50% Similarity=0.790 Sum_probs=502.7
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||+++++ ++...+.|||.++. .+|...+.+...+ ..|+|+++++++|+++++
T Consensus 50 vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~ 125 (621)
T CHL00094 50 VGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVE 125 (621)
T ss_pred ECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999976 56677889999984 4566666665555 689999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++||||
T Consensus 126 ~ae~~lg~~v~~~VItV--------------------------------------------------------------- 142 (621)
T CHL00094 126 DASKYLGETVTQAVITV--------------------------------------------------------------- 142 (621)
T ss_pred HHHHHhCCCCCeEEEEE---------------------------------------------------------------
Confidence 99999887777775555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++|||+||||||+
T Consensus 143 -------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 201 (621)
T CHL00094 143 -------------------PAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDV 201 (621)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEE
Confidence 555566777778888888899999999999999999998754 56789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 202 Sv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~ 280 (621)
T CHL00094 202 SILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPF 280 (621)
T ss_pred EEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 99999887 99999999999999999999999999999999999888888999999999999999999999888888876
Q ss_pred ccC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
+.. +.++...|||++|+++++++++++..+|+++|+.+++.+.+|+.|+||||+||+|.|++.|+++| +..+...
T Consensus 281 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~ 359 (621)
T CHL00094 281 ITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQS 359 (621)
T ss_pred cccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcC
Confidence 543 24688899999999999999999999999999999999999999999999999999999999999 5678888
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+||++|||+|||++|+++++ ..+++.+.|++|++||++..++.+.+|||+|+++|++++..|++..++|+.+.|.+
T Consensus 360 ~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i 435 (621)
T CHL00094 360 VNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV 435 (621)
T ss_pred CCchhHHHhhhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEE
Confidence 99999999999999999987 35778999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++..+.+|..||+|.|.++|+.+.|.++|+++|++|.||+|+|++.+..||+...+.+.+. .+|++++++++++++
T Consensus 436 ~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~ 514 (621)
T CHL00094 436 LQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEA 514 (621)
T ss_pred EeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888754 579999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
.++..+|+..+++.++||+||+|+|.+|+++.....++++++++++.+.++++++||+++ ..++|++++++|++.++
T Consensus 515 ~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~ 591 (621)
T CHL00094 515 EKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALM 591 (621)
T ss_pred HHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975337889999999999999999999986 45899999999999999
Q ss_pred HHHHHHHh-c-CCC-CCCCCC
Q psy3270 636 PIMTKLHQ-A-GGK-GPDVEE 653 (655)
Q Consensus 636 ~i~~r~~e-~-~~~-~~~~~~ 653 (655)
++..++++ + +++ |..+|+
T Consensus 592 ~~~~kl~~~~~~~~~~~~~~~ 612 (621)
T CHL00094 592 EIGKEVYSSTSTTDPASNDDD 612 (621)
T ss_pred HHHHHHHhhcccCCCCCCcCc
Confidence 99998777 3 222 555554
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.1e-90 Score=780.52 Aligned_cols=543 Identities=52% Similarity=0.848 Sum_probs=498.0
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|++++.+||++|++++|||||++++ .++...++|||.+..++|...+.+ +| +.|+|++++|++|+++++.
T Consensus 48 vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~~~~~~~~~~v~~~~~~~~~~v--~~--~~~~peel~a~~L~~l~~~ 121 (595)
T TIGR02350 48 VGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKV--DG--KEYTPQEISAMILQKLKKD 121 (595)
T ss_pred ECHHHHHhhhhCchhhhHHHHHHhCCCch--HHHHHhhcCCeeEEcCCCceEEEE--CC--EEecHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999994 477788999999666666666655 44 6899999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|+.++|.++.++||||
T Consensus 122 a~~~~~~~v~~~VItV---------------------------------------------------------------- 137 (595)
T TIGR02350 122 AEAYLGEKVTEAVITV---------------------------------------------------------------- 137 (595)
T ss_pred HHHHhCCCCCeEEEEE----------------------------------------------------------------
Confidence 9999988777775555
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|++|++.||+++++||+.||++++++++||+|||++|+.... ..+.+++||||||||||+|
T Consensus 138 ------------------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvs 198 (595)
T TIGR02350 138 ------------------PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVS 198 (595)
T ss_pred ------------------CCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEE
Confidence 555667777788888888899999999999999999987653 3578999999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.++ .++++++.|+..+||.+||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+
T Consensus 199 v~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~ 277 (595)
T TIGR02350 199 ILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFI 277 (595)
T ss_pred EEEecCC-eEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeec
Confidence 9999887 999999999999999999999999999999999988888889999999999999999999999998888765
Q ss_pred cC----CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCC
Q psy3270 321 HE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396 (655)
Q Consensus 321 ~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~ 396 (655)
.. +.++.+.|||++|+++++|+++++..+++++|+.+++++.+|+.|+||||+||+|+|++.|++.|+ ..+..++
T Consensus 278 ~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~ 356 (595)
T TIGR02350 278 TADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSV 356 (595)
T ss_pred ccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCc
Confidence 43 356889999999999999999999999999999999999999999999999999999999999995 6788899
Q ss_pred CchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEE
Q psy3270 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVF 476 (655)
Q Consensus 397 ~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~ 476 (655)
||++|||+|||++|+.+++. ++++.+.|++|++||++..++.+.+|||+|+++|++++.+|++..|+|+.+.|.+|
T Consensus 357 ~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~ 432 (595)
T TIGR02350 357 NPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVL 432 (595)
T ss_pred CcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEE
Confidence 99999999999999999873 57889999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHH
Q psy3270 477 EGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAE 556 (655)
Q Consensus 477 ~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~ 556 (655)
||++..+.+|..||++.|+++|+.+.|.++|+++|++|.||+|+|++.+..+|+...+.+... .+||+++++++.+++.
T Consensus 433 ~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~ 511 (595)
T TIGR02350 433 QGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAE 511 (595)
T ss_pred eecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888765 5699999999999999
Q ss_pred HhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHH
Q psy3270 557 KYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 557 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~ 636 (655)
++..+|+..+++.++||+||+|||.+|+.|.+...++++++++++.+.++++++||+++ +..+|++++++|++.+++
T Consensus 512 ~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~ 588 (595)
T TIGR02350 512 ANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQK 588 (595)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975447899999999999999999999986 667999999999999999
Q ss_pred HHHHHH
Q psy3270 637 IMTKLH 642 (655)
Q Consensus 637 i~~r~~ 642 (655)
+..+++
T Consensus 589 ~~~~~~ 594 (595)
T TIGR02350 589 LAEAMY 594 (595)
T ss_pred HHHHHh
Confidence 998765
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.5e-89 Score=763.99 Aligned_cols=539 Identities=40% Similarity=0.643 Sum_probs=488.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||+++.|+. . .+.|||.++. .+|...+.+. + ..++|++++|++|+++++
T Consensus 47 vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~ 119 (599)
T TIGR01991 47 VGKEALAAAAEDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQ 119 (599)
T ss_pred ecHHHHHhhhhChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHH
Confidence 69999999999999999999999999998853 3 6789999884 4566666553 3 379999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|||
T Consensus 120 ~a~~~lg~~v~~~VIt---------------------------------------------------------------- 135 (599)
T TIGR01991 120 RAEESLGGDLVGAVIT---------------------------------------------------------------- 135 (599)
T ss_pred HHHHHhCCCcceEEEE----------------------------------------------------------------
Confidence 9999988877777555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||++|++.||+++++|++.||++++++++||+|||++|+.... .+.+++|||+||||||+
T Consensus 136 ------------------VPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~Dv 195 (599)
T TIGR01991 136 ------------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDV 195 (599)
T ss_pred ------------------ECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEE
Confidence 5555667777888888888999999999999999999998764 57889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||+.|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++.
T Consensus 196 Si~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~ 270 (599)
T TIGR01991 196 SILKLTKG-VFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL 270 (599)
T ss_pred EEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE
Confidence 99999887 899999999999999999999999998654 4444567889999999999999999999888888864
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
++.++.++|||++|+++++|+++++..+|.++|+.+++.+.+|+.|+||||+||+|+|+++|++.| +..+..++||+
T Consensus 271 --~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npd 347 (599)
T TIGR01991 271 --DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPD 347 (599)
T ss_pred --CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCc
Confidence 678899999999999999999999999999999999999999999999999999999999999999 45677789999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+|.+.++||||++||++++..|++..|+|+.+.|.||||+
T Consensus 348 eaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe 425 (599)
T TIGR01991 348 QVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGE 425 (599)
T ss_pred HHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeec
Confidence 9999999999999997 34456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..+.|.+. .+|++++++++.+++.++.
T Consensus 426 ~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~ 504 (599)
T TIGR01991 426 RELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHA 504 (599)
T ss_pred ccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999998888765 5699999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|...++..+++|++|+|+|.+++.+.+....+++++++++.+.++++++||+++ +...++++.++|++.++++..
T Consensus 505 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 505 EEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999965446889999999999999999999976 568999999999999999998
Q ss_pred HHHhc
Q psy3270 640 KLHQA 644 (655)
Q Consensus 640 r~~e~ 644 (655)
+.++.
T Consensus 582 ~~~~~ 586 (599)
T TIGR01991 582 RRMDR 586 (599)
T ss_pred HHHhh
Confidence 65554
No 13
>KOG0102|consensus
Probab=100.00 E-value=4.6e-91 Score=709.36 Aligned_cols=549 Identities=49% Similarity=0.804 Sum_probs=509.6
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++|+..||.|||+.-||||||.|+||++|++++..||+++. .||+..+.. .| ..|+|.++.+++|.++++
T Consensus 75 vg~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~ 150 (640)
T KOG0102|consen 75 VGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKE 150 (640)
T ss_pred ecchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999994 577766655 55 899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|++|++.++.++|++||+|
T Consensus 151 tae~yl~~~v~~avvtvpAy------------------------------------------------------------ 170 (640)
T KOG0102|consen 151 TAEAYLGKKVKNAVITVPAY------------------------------------------------------------ 170 (640)
T ss_pred HHHHHcCchhhheeeccHHH------------------------------------------------------------
Confidence 99999998888875555555
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|++.||+++++|.++||++++++++||+|||++|+++.. .+..++|||+||||||+
T Consensus 171 ----------------------fndsqRqaTkdag~iagl~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdi 226 (640)
T KOG0102|consen 171 ----------------------FNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDI 226 (640)
T ss_pred ----------------------HhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeee
Confidence 566777788888888888899999999999999999977 47889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
+++.+.+| +|++.++.||.++||++||..++.|+...|....+.++..+.++++|++.++|++|+.||...+..+.++.
T Consensus 227 silei~~g-vfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~ 305 (640)
T KOG0102|consen 227 SILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPF 305 (640)
T ss_pred eeehhccc-eeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccce
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCC----cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCC
Q psy3270 320 LHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395 (655)
Q Consensus 320 ~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 395 (655)
...+ ..+.+++||.+|++++.++++|.+.++.++|++|++...+|+.|+||||++|+|.+++.+++.| ++.+...
T Consensus 306 iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~ 384 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKG 384 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCC
Confidence 6554 5688999999999999999999999999999999999999999999999999999999999999 6788999
Q ss_pred CCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEE
Q psy3270 396 INPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQV 475 (655)
Q Consensus 396 ~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i 475 (655)
+|||++||.|||+++..|++ .++++.+.|++|.++||++.+|.|..+||+|+.||++++..|.|..|+|+.+.|.+
T Consensus 385 vnPdeava~GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv 460 (640)
T KOG0102|consen 385 VNPDEAVAGGAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKV 460 (640)
T ss_pred cCCcchhccchhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEe
Confidence 99999999999999999998 47899999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHH
Q psy3270 476 FEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEA 555 (655)
Q Consensus 476 ~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~ 555 (655)
|||++....+|..+|+|.+.|+||+|+|.|.|+|+|.+|.||+++|+|.++.|||..++++... ++||++|++.+..+.
T Consensus 461 ~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~ea 539 (640)
T KOG0102|consen 461 FQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEA 539 (640)
T ss_pred eechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 459999999999999
Q ss_pred HHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHH
Q psy3270 556 EKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 556 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~ 635 (655)
+.+...|+.++++.+.+|..|+++|.....+....+.++..+..++...+....+.+-.-...+.++...+...|++..-
T Consensus 540 er~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~l 619 (640)
T KOG0102|consen 540 ERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASL 619 (640)
T ss_pred HHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999887666777777778999999998888875322344888999999999999
Q ss_pred HHHHHHHhc
Q psy3270 636 PIMTKLHQA 644 (655)
Q Consensus 636 ~i~~r~~e~ 644 (655)
|+...++..
T Consensus 620 kl~es~~k~ 628 (640)
T KOG0102|consen 620 KLFESAYKN 628 (640)
T ss_pred HHHHHHHhh
Confidence 999887765
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.1e-88 Score=754.80 Aligned_cols=536 Identities=39% Similarity=0.644 Sum_probs=483.6
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|++++.++|++|++++|||||++++| ++...+.|||.+.. .+|.+.+.+. + ..|+|+++++++|+++++
T Consensus 66 vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~ 139 (616)
T PRK05183 66 VGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQ 139 (616)
T ss_pred EcHHHHHhhHhCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHH
Confidence 699999999999999999999999999987 45566789999884 4676666653 2 379999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++|
T Consensus 140 ~ae~~lg~~v~~~V------------------------------------------------------------------ 153 (616)
T PRK05183 140 RAEETLGGELDGAV------------------------------------------------------------------ 153 (616)
T ss_pred HHHHHhCCCcceEE------------------------------------------------------------------
Confidence 99999887777764
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
||||++|++.||+++++|++.||+++++|++||+|||++|+.... .+..++|||+||||||+
T Consensus 154 ----------------ITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~Dv 215 (616)
T PRK05183 154 ----------------ITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDI 215 (616)
T ss_pred ----------------EEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEE
Confidence 455555667777888888888999999999999999999998654 57889999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++++.++ .++++++.|+.++||++||..|++|+.+++.. +...+++.+.+|+.+||++|+.||.+..+.+.+..
T Consensus 216 Sv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~ 290 (616)
T PRK05183 216 SILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILEQAGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL 290 (616)
T ss_pred EEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 99999887 89999999999999999999999999887643 33357889999999999999999999988888753
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
+ ...|||++|+++++|+++++..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++|+ ..+..++||+
T Consensus 291 ~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npd 363 (616)
T PRK05183 291 W------QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPD 363 (616)
T ss_pred C------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCch
Confidence 2 22599999999999999999999999999999999999999999999999999999999994 5666789999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecC
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGE 479 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~ 479 (655)
+|||+|||++|+.+++ .+...++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.|.+|||+
T Consensus 364 eaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe 441 (616)
T PRK05183 364 KVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGE 441 (616)
T ss_pred HHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEeccc
Confidence 9999999999999998 33456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhh
Q psy3270 480 RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYK 559 (655)
Q Consensus 480 ~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~ 559 (655)
+..+.+|..||++.|.++|+.|.|.++|+|+|++|.||+|+|++.+..||++.++.+.+. .+|++++++++.+++.++.
T Consensus 442 ~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~ 520 (616)
T PRK05183 442 RELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHA 520 (616)
T ss_pred ccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999988765 4699999999999999999
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 560 AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 560 ~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
.+|+..+++.+++|++|+|+|.+++.+.+....+++++++++.+.++++++||..+ +.+.|++++++|++.++++..
T Consensus 521 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~ 597 (616)
T PRK05183 521 EEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAA 597 (616)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975446789999999999999999999865 778999999999999999998
Q ss_pred HHHhc
Q psy3270 640 KLHQA 644 (655)
Q Consensus 640 r~~e~ 644 (655)
+.++.
T Consensus 598 ~~~~~ 602 (616)
T PRK05183 598 RRMDR 602 (616)
T ss_pred HHHhc
Confidence 66554
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.8e-85 Score=744.42 Aligned_cols=552 Identities=47% Similarity=0.810 Sum_probs=502.5
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|..|..++.++|+++++++|||||+.++++.++...+.+||.++. ++|.+.+.+.+.|+.+.|+|+++++++|+++++
T Consensus 46 ~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 125 (602)
T PF00012_consen 46 VGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKE 125 (602)
T ss_dssp ETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred CCcchhhhcccccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcc
Confidence 5999999999999999999999999999999999999999999985 488999999998887899999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+.++|.++.++
T Consensus 126 ~a~~~~~~~~~~~------------------------------------------------------------------- 138 (602)
T PF00012_consen 126 MAEKYLGEKVTDV------------------------------------------------------------------- 138 (602)
T ss_dssp HHHHHHTSBEEEE-------------------------------------------------------------------
T ss_pred cchhhcccccccc-------------------------------------------------------------------
Confidence 9999988776666
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
|||||++|+..||+++++||+.||+++++||+||+|||++|+..... .+..+||||+||||+|+
T Consensus 139 ---------------vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dv 202 (602)
T PF00012_consen 139 ---------------VITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDV 202 (602)
T ss_dssp ---------------EEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEE
T ss_pred ---------------eeeechhhhhhhhhcccccccccccccceeecccccccccccccccc-cccceeccccccceEee
Confidence 55556666777888888888899999999999999999999877653 57899999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC--CCceEEEE
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS--STEASLEI 317 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--~~~~~i~i 317 (655)
|++++.++ .++++++.++..+||.+||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||. +....+.+
T Consensus 203 s~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~ 281 (602)
T PF00012_consen 203 SVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISI 281 (602)
T ss_dssp EEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEE
T ss_pred eehhcccc-cccccccccccccccceecceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999988 9999999999999999999999999999999999989888999999999999999999999 56677777
Q ss_pred ccccC-CcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCC
Q psy3270 318 DALHE-GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396 (655)
Q Consensus 318 ~~~~~-~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~ 396 (655)
+++.+ |.++.+.|||++|+++++|+++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|++.|+ ..+..++
T Consensus 282 ~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~ 360 (602)
T PF00012_consen 282 ESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSV 360 (602)
T ss_dssp EEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS
T ss_pred ccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-ccccccc
Confidence 77776 788999999999999999999999999999999999999999999999999999999999999995 7888899
Q ss_pred CchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEE
Q psy3270 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVF 476 (655)
Q Consensus 397 ~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~ 476 (655)
||++|||+|||++|+.+++ .+..+++.+.|++|++||++..++.+.+++++|+++|+..+..|.+..++|+.+.|.+|
T Consensus 361 ~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~ 438 (602)
T PF00012_consen 361 NPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIY 438 (602)
T ss_dssp -TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEE
T ss_pred ccccccccccccchhhhcc--ccccccccccccccccccccccccccccccccccccccccccccchhccccccccceee
Confidence 9999999999999999998 46678899999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHH
Q psy3270 477 EGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAE 556 (655)
Q Consensus 477 ~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~ 556 (655)
+|+.....++..||++.|.++++.+.|.++|+++|++|.+|+|+|++.+..++....+.+..... +++++++++.++++
T Consensus 439 ~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~ 517 (602)
T PF00012_consen 439 EGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLE 517 (602)
T ss_dssp ESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccc
Confidence 99998888999999999999999999999999999999999999999999999888888887755 99999999999999
Q ss_pred HhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccC-CccCHHHHHHHHHHHHHHHH
Q psy3270 557 KYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQTCT 635 (655)
Q Consensus 557 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~ 635 (655)
++..+|+.+++..+++|+||+++|++|+.+++...+++++++ .+.+++..+||+++ .+++.++|++|+++|++..+
T Consensus 518 ~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~ 594 (602)
T PF00012_consen 518 EMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIE 594 (602)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876556666666 88899999999997 46789999999999999999
Q ss_pred HHHHHHHh
Q psy3270 636 PIMTKLHQ 643 (655)
Q Consensus 636 ~i~~r~~e 643 (655)
||..|+++
T Consensus 595 ~i~~r~~~ 602 (602)
T PF00012_consen 595 PIKKRYMQ 602 (602)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99999875
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-82 Score=701.70 Aligned_cols=500 Identities=34% Similarity=0.533 Sum_probs=431.2
Q ss_pred chhhhhhhcCCCCCC----hhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHHHHHHhCCCCce
Q psy3270 16 TVFDAKRLIGRKFED----QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSE 91 (655)
Q Consensus 16 ~~~~~krliG~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~ 91 (655)
|++++|||||++++| |.++...++ .+. .+...+.+...+ +.|+|++++|++|+++++.|+.++|.++.+
T Consensus 71 ti~~~KrliG~~~~~~~~~~~~~~~~k~----~~~-~~~~~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~ 143 (595)
T PRK01433 71 GLRSIKRLFGKTLKEILNTPALFSLVKD----YLD-VNSSELKLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITK 143 (595)
T ss_pred hHHHHHHHhCCCchhhccchhhHhhhhh----eee-cCCCeeEEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 899999999999976 322222221 111 122344455555 689999999999999999999999887777
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCc
Q psy3270 92 AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKV 171 (655)
Q Consensus 92 ~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~ 171 (655)
+||||
T Consensus 144 aVITV--------------------------------------------------------------------------- 148 (595)
T PRK01433 144 AVITV--------------------------------------------------------------------------- 148 (595)
T ss_pred EEEEE---------------------------------------------------------------------------
Confidence 75554
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
|++|++.||+++++|++.||++++++++||+|||++|+.... ....+||||+||||||+|++++.++ .++
T Consensus 149 -------Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~~-~~~ 218 (595)
T PRK01433 149 -------PAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILNIQEG-IFQ 218 (595)
T ss_pred -------CCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEEEeCC-eEE
Confidence 555667777788888888899999999999999999998754 4678999999999999999999888 999
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeec
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKIT 331 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~it 331 (655)
|+++.|+.++||++||..|++|+.++|... .+.. .+..||++|+.||.+..... ..++||
T Consensus 219 V~at~gd~~lGG~d~D~~l~~~~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~it 278 (595)
T PRK01433 219 VIATNGDNMLGGNDIDVVITQYLCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISIN 278 (595)
T ss_pred EEEEcCCcccChHHHHHHHHHHHHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEc
Confidence 999999999999999999999999877422 1222 23359999999998764321 167899
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 332 RARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 332 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
|++|+++|+|+++++..+++++|++++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++|+
T Consensus 279 r~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~ 355 (595)
T PRK01433 279 KQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAE 355 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHH
Confidence 999999999999999999999999998 568999999999999999999999999 56777889999999999999999
Q ss_pred HHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCcccccCCcceee
Q psy3270 412 ILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGT 491 (655)
Q Consensus 412 ~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~ 491 (655)
.+++. ..++.+.|++|+|+|+++.+|.+.+|||||++||++++..|+|..|+|+.+.|.+|||++..+.+|..||+
T Consensus 356 ~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~ 431 (595)
T PRK01433 356 NLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLAR 431 (595)
T ss_pred HhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEE
Confidence 99873 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy3270 492 FNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAA 571 (655)
Q Consensus 492 ~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~a 571 (655)
|.|.++|+.|.|.++|+|+|++|.||+|+|++.+..||++..+.|... .+||++|++++.++.+++..+|...++..++
T Consensus 432 ~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~ 510 (595)
T PRK01433 432 FELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEA 510 (595)
T ss_pred EEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 4599999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHH
Q psy3270 572 KNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638 (655)
Q Consensus 572 kN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~ 638 (655)
+|++|++++.+++.+.+....+++++++.+.+.+++.++||..+ +...+++++++|++.+.+++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~ 574 (595)
T PRK01433 511 VIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKKSM 574 (595)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975446688999999999999999999865 44556666666655555533
No 17
>KOG0103|consensus
Probab=100.00 E-value=3.5e-83 Score=671.31 Aligned_cols=557 Identities=36% Similarity=0.572 Sum_probs=494.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
+|.+|+++..+|++||+.++|||+||+|+||.+|.+.+++||+++ ..||.+++.+.|-|+.+.|+|++|+||+|.+++.
T Consensus 48 ~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~ 127 (727)
T KOG0103|consen 48 IGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKA 127 (727)
T ss_pred eeeccccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999 5799999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.|+..+..++.+|||+||+||++.||+++++|+++|||+++++++|-+|+|+.||+...-
T Consensus 128 ~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtD-------------------- 187 (727)
T KOG0103|consen 128 TAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTD-------------------- 187 (727)
T ss_pred HHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhccccccc--------------------
Confidence 999999999999999999999999998888888877777777666666666666553210
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
+.....++.+++++|+|+.++.+
T Consensus 188 ---------------------------------------------------------LP~~~ekpr~v~fvD~GHS~~q~ 210 (727)
T KOG0103|consen 188 ---------------------------------------------------------LPENEEKPRNVVFVDIGHSSYQV 210 (727)
T ss_pred ---------------------------------------------------------CCCcccCcceEEEEeccccccee
Confidence 00001246789999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcc
Q psy3270 240 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDA 319 (655)
Q Consensus 240 sv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~ 319 (655)
|++.+..| .++++++.+|..+||++||+.|.+|++++|+.+|++++..++++..||+.+||++|+.||++....++|++
T Consensus 211 si~aF~kG-~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEc 289 (727)
T KOG0103|consen 211 SIAAFTKG-KLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIEC 289 (727)
T ss_pred eeeeeccC-cceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCch
Q psy3270 320 LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 399 (655)
Q Consensus 320 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 399 (655)
++++.|.+..|+|++|++++.|+++|+..++.++|+++++..++|+.|.+|||+||+|.|.+.|.++| ++.+.+++|.+
T Consensus 290 fM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~d 368 (727)
T KOG0103|consen 290 FMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQD 368 (727)
T ss_pred eeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred hHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCcccc-----CcEEEEEEecCCccCcceeEEEEeecCCCceeEEE
Q psy3270 400 EAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETA-----GGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQ 474 (655)
Q Consensus 400 ~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~-----~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~ 474 (655)
+|||+|||+++|++|+ .++++++.+.|+.||++.+... ++....+||+|.++|.++..+|.... .+++.
T Consensus 369 EavarG~ALqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~le 442 (727)
T KOG0103|consen 369 EAVARGAALQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLE 442 (727)
T ss_pred HHHHHhHHHHHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEE
Confidence 9999999999999999 8899999999999999977632 25557899999999999998887643 48888
Q ss_pred EEecC-cccccCCcceeeEEecCCCCCCCC-CCeEEEEEEeCCCeeEEEEEEec------c-------------------
Q psy3270 475 VFEGE-RAMTKDNNLLGTFNLTGIPPAPRG-VPKIEVTFDLDANGILNVSAKDS------S------------------- 527 (655)
Q Consensus 475 i~~g~-~~~~~~~~~lg~~~i~~~~~~~~g-~~~i~v~~~~d~~g~l~v~~~~~------~------------------- 527 (655)
++++. ...+.....|+++++.++.+...| ..++++...++.+|+++|...-. .
T Consensus 443 a~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~ 522 (727)
T KOG0103|consen 443 AKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERI 522 (727)
T ss_pred EEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhh
Confidence 87765 445556678999999998876663 46799999999999999864310 0
Q ss_pred ---CCC----ceeeeeecC-CCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC-CCCCHHHH
Q psy3270 528 ---TGK----AERITIQND-KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADK 598 (655)
Q Consensus 528 ---~~~----~~~~~i~~~-~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~-~~~~~~e~ 598 (655)
.++ ...+.+... .++++..+++.+.+++.+|..+|+...++.+++|.||+|||+||++|.+.+ +|++++++
T Consensus 523 ~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~ 602 (727)
T KOG0103|consen 523 APAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAER 602 (727)
T ss_pred ccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHH
Confidence 011 111223222 357999999999999999999999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHHHHHHhccC-CccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 599 TSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 599 ~~l~~~l~e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
++|...|+++++|||++ ++.++..|..|+.+|+.+++ ..|+.+.
T Consensus 603 e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~ 647 (727)
T KOG0103|consen 603 EKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDEN 647 (727)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhh
Confidence 99999999999999997 68999999999999999998 5565554
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-81 Score=691.58 Aligned_cols=525 Identities=55% Similarity=0.843 Sum_probs=489.3
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI 80 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ 80 (655)
+|..|++|+..||.||++.+||++|+.- ....+.+..+| +.|+|++|++++|+++++.
T Consensus 54 vG~~A~~q~~~~p~~t~~~~kr~~G~~~--------------------~~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ 111 (579)
T COG0443 54 VGQAAKRQAVDNPENTIFSIKRKIGRGS--------------------NGLKISVEVDG--KKYTPEEISAMILTKLKED 111 (579)
T ss_pred ecHHHHHHhhhCCcceEEEEehhcCCCC--------------------CCCcceeeeCC--eeeCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999871 11123344455 7899999999999999999
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
||.++|.+++++|||||+|
T Consensus 112 ae~~lg~~v~~~VItVPay------------------------------------------------------------- 130 (579)
T COG0443 112 AEAYLGEKVTDAVITVPAY------------------------------------------------------------- 130 (579)
T ss_pred HHHhhCCCcceEEEEeCCC-------------------------------------------------------------
Confidence 9999988888875555555
Q ss_pred HHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE
Q psy3270 161 EIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240 (655)
Q Consensus 161 ~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs 240 (655)
|++.||+++++|+++|||+++++++||+|||++|+.... .+..++|||+||||||+|
T Consensus 131 ---------------------F~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvS 187 (579)
T COG0443 131 ---------------------FNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVS 187 (579)
T ss_pred ---------------------CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEE
Confidence 566777788888888899999999999999999999877 788999999999999999
Q ss_pred EEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Q psy3270 241 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDAL 320 (655)
Q Consensus 241 v~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~ 320 (655)
++++.+| .++++++.||.++||+|||.+|.+|+.++|..+++.++..++..+++|+.+||++|+.||...+..+.+++.
T Consensus 188 ll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~ 266 (579)
T COG0443 188 LLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSI 266 (579)
T ss_pred EEEEcCC-EEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhc
Confidence 9999977 999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 321 HEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 321 ~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
..+.++..+|||++||+++.+++.++..++..++++++++..+|+.|+||||++|||.|++.++++|+ +.+...+||++
T Consensus 267 ~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpde 345 (579)
T COG0443 267 GGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDE 345 (579)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccH
Confidence 77777889999999999999999999999999999999999999999999999999999999999995 88899999999
Q ss_pred HHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCcEEEEEEecCCccCcceeEEEEeecCCCceeEEEEEecCc
Q psy3270 401 AVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGER 480 (655)
Q Consensus 401 ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~ 480 (655)
+||.|||++|+.+++.. .++++.|++|+++|+++.++.+.++|++|+.+|.++...|++..|+|+.+.+.+++|++
T Consensus 346 ava~GAa~qa~~l~~~~----~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~ 421 (579)
T COG0443 346 AVALGAAIQAAVLSGEV----PDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGER 421 (579)
T ss_pred HHHHHHHHHHHhhcCcc----cCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecch
Confidence 99999999999999832 38899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcceeeEEecCCCCCCCCCCeEEEEEEeCCCeeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHhhh
Q psy3270 481 AMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKA 560 (655)
Q Consensus 481 ~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~~~ 560 (655)
....+|..+|.|.+.++||.+.|.+.|+++|.+|.||+++|++.+..+|+...++|....+ |++++++.+.+.+..+.+
T Consensus 422 ~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~ 500 (579)
T COG0443 422 EMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAA 500 (579)
T ss_pred hhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999877 999999999999999999
Q ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHH
Q psy3270 561 EDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTK 640 (655)
Q Consensus 561 ~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r 640 (655)
.|+..++..+.+|..+++++.++..|.+.. .+++++++++.+.+.+++.||+. . .++++.+.++|+....++..+
T Consensus 501 ~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~ 575 (579)
T COG0443 501 LDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEK 575 (579)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776 88899999999999999999998 2 889999999999999999988
Q ss_pred HHh
Q psy3270 641 LHQ 643 (655)
Q Consensus 641 ~~e 643 (655)
+++
T Consensus 576 ~~~ 578 (579)
T COG0443 576 KYQ 578 (579)
T ss_pred Hhc
Confidence 765
No 19
>KOG0104|consensus
Probab=100.00 E-value=1.4e-72 Score=591.78 Aligned_cols=554 Identities=31% Similarity=0.483 Sum_probs=478.9
Q ss_pred CChhhHHhhhcCcCcchhhhhhhcCCCCCChhhHhhhccCCeEEe-ecCCcceEEEEEcCceeEeChhhhHHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~~~~~krliG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~ 79 (655)
||.+|...+.|+|++++.+++.|||++.+||.++.+.+++||--+ .++.+..+.+.+++ ...|++|+++||+|.+++.
T Consensus 70 fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~ 148 (902)
T KOG0104|consen 70 FGEAAASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKS 148 (902)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998887554 45567778777776 4789999999999999999
Q ss_pred HHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 80 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 80 ~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
.||.++..+|+++|||||+||++.||+++++|+++||++++++|||.+|+|+.||+.++..
T Consensus 149 ~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~------------------- 209 (902)
T KOG0104|consen 149 LAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE------------------- 209 (902)
T ss_pred HHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcccc-------------------
Confidence 9999999999999999999999999999999999999999999999999999998865311
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEE
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 239 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dv 239 (655)
-....++++|||||+|+|.+
T Consensus 210 ------------------------------------------------------------i~~~~q~~i~YDMGs~sT~A 229 (902)
T KOG0104|consen 210 ------------------------------------------------------------INETPQHYIFYDMGSGSTSA 229 (902)
T ss_pred ------------------------------------------------------------CCCCceEEEEEecCCCceeE
Confidence 01256889999999999999
Q ss_pred EEEEEe------CC---ceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHHhcC
Q psy3270 240 SVLAID------EG---SLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKK--DILANTRAVRRLRTACERAKRTLS 308 (655)
Q Consensus 240 sv~~~~------~~---~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~e~~K~~ls 308 (655)
+++.+. .| ..+++++.++|..|||..|+.+|.+|+.+.|.+.++. ++..+++++++|.++|+++|..||
T Consensus 230 tivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLS 309 (902)
T KOG0104|consen 230 TIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLS 309 (902)
T ss_pred EEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhh
Confidence 999875 11 3789999999999999999999999999999988764 688899999999999999999999
Q ss_pred CCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhC
Q psy3270 309 SSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 309 ~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 388 (655)
+|..+.+.|+++.+++||...|||++||++|+++..|+..+|+++|..++++.++|+.|+|.||+||+|.||+.|.++.+
T Consensus 310 ANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~ 389 (902)
T KOG0104|consen 310 ANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVG 389 (902)
T ss_pred cchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCCCCchhHHHhHHHHHHHHHcCCCCccccCeEeeecccCCCCccccCc--------EEEEEEecCCccCcceeEE
Q psy3270 389 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGG--------VMTKIVERNSRIPCKQQQT 460 (655)
Q Consensus 389 ~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~iP~~~~~~ 460 (655)
..++...+|.|+|+++||+++||.||. +|+++++.+.|.++|+|-++.... ....+|+++.++|..+..+
T Consensus 390 ~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~ 467 (902)
T KOG0104|consen 390 KEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVIT 467 (902)
T ss_pred HHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceee
Confidence 889999999999999999999999998 899999999999999887754322 2235899999999998888
Q ss_pred EEeecCCCceeEEEEEecCcccccCCcceeeEEecCCCCCC----C---CCCeEEEEEEeCCCeeEEEEEEec-------
Q psy3270 461 FTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAP----R---GVPKIEVTFDLDANGILNVSAKDS------- 526 (655)
Q Consensus 461 ~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~----~---g~~~i~v~~~~d~~g~l~v~~~~~------- 526 (655)
|+.+.|+ +.+.+-.|.-. ..+-++.++++..+- . ....|+++|.+|.+|++.|+..+.
T Consensus 468 ~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~ 539 (902)
T KOG0104|consen 468 FTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKE 539 (902)
T ss_pred ccccCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCC
Confidence 8776664 34433332210 223477777765331 1 134699999999999999875420
Q ss_pred --------------cC-----------------------CC-c-------------------------------------
Q psy3270 527 --------------ST-----------------------GK-A------------------------------------- 531 (655)
Q Consensus 527 --------------~~-----------------------~~-~------------------------------------- 531 (655)
+| ++ +
T Consensus 540 ~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~ 619 (902)
T KOG0104|consen 540 EDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMV 619 (902)
T ss_pred cccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcce
Confidence 00 00 0
Q ss_pred eeeeeecC---CCCCcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q psy3270 532 ERITIQND---KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACS 606 (655)
Q Consensus 532 ~~~~i~~~---~~~l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~--~~~~~~e~~~l~~~l~ 606 (655)
+.+.|... ...|+.+.++....++..+.++|+.+.++++|-|.||.|+|++.++|.++. .+.+++|+..|.+.+.
T Consensus 620 ~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~ 699 (902)
T KOG0104|consen 620 VRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVS 699 (902)
T ss_pred eEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHH
Confidence 01333332 235889999999999999999999999999999999999999999998766 8899999999999999
Q ss_pred HHHHHhccC-CccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 607 ATLTWLEGN-SLAEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 607 e~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
.+.+||+++ .++++++|.+++++|+++...+..|..++
T Consensus 700 ~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 700 LLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999997 56889999999999999999999997775
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=8.9e-45 Score=389.12 Aligned_cols=296 Identities=25% Similarity=0.331 Sum_probs=241.9
Q ss_pred CChhhHHhhhcCcCcc--hhhhhhhcCCCCCChhhHhhhccCCeEEeecCCcceEEEEEcCceeEeChhhhHHHHHHHHH
Q psy3270 1 MPISLDLSVAMNPKNT--VFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMR 78 (655)
Q Consensus 1 ~g~~a~~~~~~~p~~~--~~~~krliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~ 78 (655)
+|..|+++...+|.++ +..+||+||...-.+ + ....|+++++++|++++
T Consensus 88 ~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------------~--~~~~~e~l~a~iL~~lk 138 (450)
T PRK11678 88 FGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------------Q--QVALFEDLVCAMMLHIK 138 (450)
T ss_pred hhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------------c--ceeCHHHHHHHHHHHHH
Confidence 6999999999999999 779999999752110 0 22349999999999999
Q ss_pred HHHHHHhCCCCceEEEecCCCCC-----HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEecccc
Q psy3270 79 EIAEVYLGGKVSEAVITVPAYFN-----DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGG 153 (655)
Q Consensus 79 ~~ae~~~~~~i~~~vitvP~~f~-----~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~ 153 (655)
+.|+.++|.++.++|||||++|+ +.||++
T Consensus 139 ~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a---------------------------------------------- 172 (450)
T PRK11678 139 QQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQA---------------------------------------------- 172 (450)
T ss_pred HHHHHHhCCCCCcEEEEECCccccCCcchhHHHH----------------------------------------------
Confidence 99999999999999888888875 333321
Q ss_pred chhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeC
Q psy3270 154 TFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLG 233 (655)
Q Consensus 154 ~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~G 233 (655)
++++++||+.||++++++++||+|||++|+.... .+..+||||+|
T Consensus 173 ---------------------------------~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vlV~D~G 217 (450)
T PRK11678 173 ---------------------------------EGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVLVVDIG 217 (450)
T ss_pred ---------------------------------HHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEEEEEeC
Confidence 3447889999999999999999999999986543 67889999999
Q ss_pred CceeEEEEEEEeCCc------eEEEEEecCCCCCCcchHHHHHH-HHHHHHHHhh----ccccc----------------
Q psy3270 234 GGTFDVSVLAIDEGS------LFQVKSTAGDTHLGGEDFDNRLV-TFFADEFKRK----HKKDI---------------- 286 (655)
Q Consensus 234 ggT~dvsv~~~~~~~------~~~v~~~~~~~~lGG~~~d~~l~-~~~~~~~~~~----~~~~~---------------- 286 (655)
|||||+|++++.++. ..+++++.| ..+||+|||..|+ +++...|... .+.++
T Consensus 218 GGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~ 296 (450)
T PRK11678 218 GGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPA 296 (450)
T ss_pred CCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccch
Confidence 999999999986531 368899888 5799999999998 6777777421 11100
Q ss_pred -------------------cccHHHH------------HHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHH
Q psy3270 287 -------------------LANTRAV------------RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARF 335 (655)
Q Consensus 287 -------------------~~~~~~~------------~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~ 335 (655)
..+++.+ .+|+.+||++|+.||.+..+.+.++.+.. ++..+|||++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~~~ItR~ef 374 (450)
T PRK11678 297 QSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--GLATEISQQGL 374 (450)
T ss_pred hhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--CcceeeCHHHH
Confidence 0122223 36889999999999999999998876543 46789999999
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+++++|+++++..+++++|+++++. ++.|+||||+|++|+|++.+++.||+.++. ..+|..+||.|+|++|..+
T Consensus 375 e~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 375 EEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHHHHhh
Confidence 9999999999999999999999876 478999999999999999999999665554 5699999999999999754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.7e-32 Score=285.34 Aligned_cols=219 Identities=22% Similarity=0.409 Sum_probs=180.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..+|+++++|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... ..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lVvDiGggttdvsvv~~g~--~~-- 170 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS--QPSGNMVVDIGGGTTDIAVLSLGG--IV-- 170 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEEeCC--EE--
Confidence 568888888899999999999999999999999999999999998644 567799999999999999998642 22
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC----CceEEEEc--cccCCcce
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----TEASLEID--ALHEGIDF 326 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----~~~~i~i~--~~~~~~~~ 326 (655)
..++..+||++||+.|.+++.+++....+ ...||++|+.++.. ....+.+. .+..+.+.
T Consensus 171 --~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 235 (336)
T PRK13928 171 --TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPK 235 (336)
T ss_pred --EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCce
Confidence 34578999999999999999876642211 24699999998643 12333332 22345567
Q ss_pred EEeecHHHHHHHhhHHHHhhhhHHHHHHHHcC--CCCCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHH
Q psy3270 327 YSKITRARFEELCMDLFRQTLAPVERALNDAK--LDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA 403 (655)
Q Consensus 327 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava 403 (655)
..+|+|++|++++.++++++.+.|.+.|+.++ +..+.++ .|+|+||+|++|++++++++.| +.++....||+++||
T Consensus 236 ~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava 314 (336)
T PRK13928 236 TITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVA 314 (336)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHH
Confidence 78999999999999999999999999999986 4455677 7999999999999999999999 678888889999999
Q ss_pred hHHHHHHHHH
Q psy3270 404 YGAAVQAAIL 413 (655)
Q Consensus 404 ~GAa~~a~~l 413 (655)
+|||+++..+
T Consensus 315 ~Gaa~~~~~~ 324 (336)
T PRK13928 315 LGTGKMLENI 324 (336)
T ss_pred HHHHHHHhch
Confidence 9999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.3e-31 Score=280.22 Aligned_cols=216 Identities=21% Similarity=0.380 Sum_probs=173.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..||+++.+|++.||++++.+++||+|||++|+.... ...+++|+|+||||||++++.+.. ..
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lvvDiG~gtt~v~vi~~~~--~~-- 173 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVVVDIGGGTTEVAIISFGG--VV-- 173 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEEEEeCCCeEEEEEEEeCC--EE--
Confidence 346666666777888888889999999999999999999999987644 567899999999999999997642 22
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----ceEEEEc--cccCCcce
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----EASLEID--ALHEGIDF 326 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~i~i~--~~~~~~~~ 326 (655)
..++..+||++||+.|.+++.+.+. ... . ...||++|+.++... ...+.+. .+..+.+.
T Consensus 174 --~~~~~~~GG~~id~~l~~~l~~~~~----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~ 238 (335)
T PRK13929 174 --SCHSIRIGGDQLDEDIVSFVRKKYN----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK 238 (335)
T ss_pred --EecCcCCHHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe
Confidence 3455789999999999999976542 211 1 246999999998631 2223332 12345567
Q ss_pred EEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHH
Q psy3270 327 YSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA 403 (655)
Q Consensus 327 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava 403 (655)
.+.++|++|++++.+++.++.+.|.+.|+.++.. ...++ +|+|+||+|++|++++++++.| +.++....||+++|+
T Consensus 239 ~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va 317 (335)
T PRK13929 239 TITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVA 317 (335)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHH
Confidence 8899999999999999999999999999998643 35677 6999999999999999999999 678888889999999
Q ss_pred hHHHHHH
Q psy3270 404 YGAAVQA 410 (655)
Q Consensus 404 ~GAa~~a 410 (655)
.||+..-
T Consensus 318 ~Ga~~~~ 324 (335)
T PRK13929 318 IGTGRSL 324 (335)
T ss_pred HHHHHHH
Confidence 9999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=9.4e-29 Score=259.94 Aligned_cols=219 Identities=23% Similarity=0.398 Sum_probs=179.8
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
..+|+|+|++|+..+|++++.|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++.... .
T Consensus 97 ~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvDiGggttdvs~v~~~~~--~- 171 (334)
T PRK13927 97 PRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVDIGGGTTEVAVISLGGI--V- 171 (334)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEecCCe--E-
Confidence 4899999999999999999999999999999999999999999987643 5667899999999999999976432 1
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc----eEEEE--ccccCCcc
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE----ASLEI--DALHEGID 325 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~i~i--~~~~~~~~ 325 (655)
..++..+||++||+.|.+++.+.+.. .. . ...||++|+.++.... ..+.+ +....+.+
T Consensus 172 ---~~~~~~lGG~~id~~l~~~l~~~~~~----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (334)
T PRK13927 172 ---YSKSVRVGGDKFDEAIINYVRRNYNL----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLP 235 (334)
T ss_pred ---eeCCcCChHHHHHHHHHHHHHHHhCc----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCC
Confidence 23456899999999999999765532 11 1 2358999999875322 22333 22334556
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHH
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~av 402 (655)
..++|+|++|++++.+.++++.+.|.++|+.++.. ...++ .|+|+||+|++|+++++|++.| +.++....+|+++|
T Consensus 236 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~av 314 (334)
T PRK13927 236 KTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCV 314 (334)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHH
Confidence 68899999999999999999999999999998643 23344 5999999999999999999999 67788888999999
Q ss_pred HhHHHHHHHH
Q psy3270 403 AYGAAVQAAI 412 (655)
Q Consensus 403 a~GAa~~a~~ 412 (655)
|+||++++..
T Consensus 315 a~Ga~~~~~~ 324 (334)
T PRK13927 315 ARGTGKALEN 324 (334)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=2.5e-28 Score=256.16 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=174.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
.+|+|||++|+..+|+++++|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++....
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvDiG~gttdvs~v~~~~~----- 172 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVDIGGGTTEVAVISLGGI----- 172 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEEcCCCeEEEEEEEeCCE-----
Confidence 468888888899999999999999999999999999999999987543 5678999999999999999986432
Q ss_pred EEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc-----eEEEEcc--ccCCcc
Q psy3270 253 KSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE-----ASLEIDA--LHEGID 325 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~-----~~i~i~~--~~~~~~ 325 (655)
...++..+||++||+.|.+++.+.+. ... . +..||++|+.++.... ..+.+.. ...+.+
T Consensus 173 -~~~~~~~lGG~did~~l~~~l~~~~~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (333)
T TIGR00904 173 -VVSRSIRVGGDEFDEAIINYIRRTYN----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLP 238 (333)
T ss_pred -EecCCccchHHHHHHHHHHHHHHHhc----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCC
Confidence 12345689999999999999976542 111 1 2469999999875321 1222221 112344
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC-CCc-c-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHH
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK-GSI-H-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~av 402 (655)
....+++++|.+++.+.++++.+.+.+.++.++... .++ + .|+|+||+|++|+++++|++.| +.++....||+++|
T Consensus 239 ~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~v 317 (333)
T TIGR00904 239 RTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCV 317 (333)
T ss_pred eEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHH
Confidence 567899999999999999999999999999876442 233 3 6999999999999999999999 67888889999999
Q ss_pred HhHHHHHHHH
Q psy3270 403 AYGAAVQAAI 412 (655)
Q Consensus 403 a~GAa~~a~~ 412 (655)
|.||++++..
T Consensus 318 a~Ga~~~~~~ 327 (333)
T TIGR00904 318 AKGTGKALED 327 (333)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 25
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=2.4e-28 Score=242.13 Aligned_cols=204 Identities=21% Similarity=0.316 Sum_probs=166.6
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGE 142 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~ 142 (655)
.+.--+.++++|+++++.|+.++|.++.++|+|||++|
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~------------------------------------------ 72 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGT------------------------------------------ 72 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCC------------------------------------------
Confidence 56777889999999999999988888888866666655
Q ss_pred eeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccC
Q psy3270 143 KNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222 (655)
Q Consensus 143 ~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~ 222 (655)
++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 73 ----------------------------------------~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---- 108 (239)
T TIGR02529 73 ----------------------------------------IEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---- 108 (239)
T ss_pred ----------------------------------------CcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----
Confidence 556677777888888899999999999999998643
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACER 302 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 302 (655)
..+|+|+||||||+++++. | . +.. ..+..+||++||+.|.+.+ +.+ ..+||+
T Consensus 109 ---~~~vvDiGggtt~i~i~~~--G-~--i~~-~~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~ 160 (239)
T TIGR02529 109 ---NGAVVDVGGGTTGISILKK--G-K--VIY-SADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEE 160 (239)
T ss_pred ---CcEEEEeCCCcEEEEEEEC--C-e--EEE-EEeeecchHHHHHHHHHHh--------CCC-----------HHHHHH
Confidence 2599999999999999863 4 2 122 3356799999999887554 121 246999
Q ss_pred HHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHH
Q psy3270 303 AKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 303 ~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
+|+.++. .+++.++++++++++.+.+++.|++.+ ++.|+|+||+|++|++++.
T Consensus 161 ~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 161 YKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADV 213 (239)
T ss_pred HHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHH
Confidence 9987541 456778999999999999999998643 5689999999999999999
Q ss_pred HHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 383 LQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 383 l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
+++.| +.++..+.||++++|.|||+
T Consensus 214 l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHh-CCCcccCCCCCeehhheeec
Confidence 99999 67888899999999999986
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=3.4e-27 Score=248.49 Aligned_cols=233 Identities=23% Similarity=0.350 Sum_probs=184.1
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCcee
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTF 237 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~ 237 (655)
++.+......+.....+|+|+|++|+..+|+.+.+|++.+|++.+.+++||+|||++|+.... .....+|+|+|||||
T Consensus 87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvDiG~gtt 164 (335)
T PRK13930 87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVDIGGGTT 164 (335)
T ss_pred HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEEeCCCeE
Confidence 343434333344578899999999999999999999999999999999999999999987543 455689999999999
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCc----e
Q psy3270 238 DVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE----A 313 (655)
Q Consensus 238 dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~ 313 (655)
|++++.... .. ..+...+||.+||+.|.+++.+++. .+.. ...||++|+.++.... .
T Consensus 165 dvs~v~~g~--~~----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~ 225 (335)
T PRK13930 165 EVAVISLGG--IV----YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEE 225 (335)
T ss_pred EEEEEEeCC--EE----eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCc
Confidence 999997542 22 2455789999999999999977542 2111 2468999999875432 1
Q ss_pred EEEEc--cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcce-EEEecCccchHHHHHHHHhhhC
Q psy3270 314 SLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIHD-VVLVGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 314 ~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~ 388 (655)
.+.+. ....+.+....|++++|++++.+.++++.+.+.++++.+... .+.++. |+|+||+|++|+++++|++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~- 304 (335)
T PRK13930 226 SMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET- 304 (335)
T ss_pred eEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-
Confidence 23332 223344567889999999999999999999999999987533 233454 999999999999999999999
Q ss_pred CCcccCCCCchhHHHhHHHHHHHH
Q psy3270 389 GKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 389 ~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
+.++....+|+.+||.||++.+..
T Consensus 305 ~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 305 GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CCCceecCCHHHHHHHHHHHHHhC
Confidence 577888889999999999999854
No 27
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=2.1e-25 Score=225.17 Aligned_cols=176 Identities=24% Similarity=0.389 Sum_probs=143.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEE
Q psy3270 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS 254 (655)
Q Consensus 175 vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~ 254 (655)
+++||++|+..+++++.+|++.||+++..+++||.|++.+|... ..+++|+||||||+++++ ++ .+ ..
T Consensus 92 ~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~vvDIGggtt~i~v~~--~g-~~--~~ 159 (267)
T PRK15080 92 ATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGAVVDIGGGTTGISILK--DG-KV--VY 159 (267)
T ss_pred EEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcEEEEeCCCcEEEEEEE--CC-eE--EE
Confidence 44445555566777888899999999999999999999987642 158999999999999975 34 22 22
Q ss_pred ecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHH
Q psy3270 255 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334 (655)
Q Consensus 255 ~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~ 334 (655)
.++..+||++||+.|.+++. .+ +.+||++|+.++ ++++
T Consensus 160 -~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~----------------------~~~~ 197 (267)
T PRK15080 160 -SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK----------------------HHKE 197 (267)
T ss_pred -EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC----------------------CHHH
Confidence 24678999999999987752 11 346899998753 3578
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHH
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 410 (655)
+.++++|+++++.+.+++.++.. .++.|+|+||+|++|++++.+++.| +.++..+.+|++++|.|||+++
T Consensus 198 ~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 198 IFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 89999999999999999999864 5789999999999999999999999 7788889999999999999874
No 28
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=2.4e-23 Score=221.66 Aligned_cols=307 Identities=17% Similarity=0.228 Sum_probs=212.8
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
....++. ++..|+++++.||+.++.+++++++++|+........ --..-++.-.+-.+....++.++....+..
T Consensus 42 ~I~d~~~-~~~~i~~al~~~e~~~~~~i~~v~~~v~g~~v~~~~~-----~~~i~~~~~~i~~~di~~~~~~~~~~~~~~ 115 (371)
T TIGR01174 42 VINDIEA-AVGSIQRAIEAAELMAGCEIRSVIVSISGAHIKSQNS-----IGVVAIKDKEVTQEDIERVLETAKAVAIPN 115 (371)
T ss_pred EEEcHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcccceEEEee-----eEEEEcCCCeeCHHHHHHHHHHhhcccCCC
Confidence 5566666 5899999999999999999999999999873211000 000001111233444555555554444444
Q ss_pred CeeEEEEeccccchhhHH-HHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccc
Q psy3270 142 EKNVLIFDLGGGTFDVSM-REIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~~l-~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~ 218 (655)
+...+-+.+....++... ........|. .+.-.+++.| ....+.+.+|++.||+++..++.||.|+|++|...
T Consensus 116 ~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva~~----~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~ 191 (371)
T TIGR01174 116 DQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIITGS----STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE 191 (371)
T ss_pred CCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEEEE----HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc
Confidence 444444444444443210 0111111111 2345556665 46778889999999999999999999999998654
Q ss_pred cccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy3270 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRT 298 (655)
Q Consensus 219 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (655)
.. .+..++|+|+||||||++++.. + .... .....+||++||+.|.+.+. ..+.
T Consensus 192 ~~--~~~~~~vvDiG~gtt~i~i~~~--g-~~~~---~~~i~~GG~~it~~i~~~l~-------------------~~~~ 244 (371)
T TIGR01174 192 DE--KELGVCLIDIGGGTTDIAVYTG--G-SIRY---TKVIPIGGNHITKDIAKALR-------------------TPLE 244 (371)
T ss_pred ch--hcCCEEEEEeCCCcEEEEEEEC--C-EEEE---EeeecchHHHHHHHHHHHhC-------------------CCHH
Confidence 33 4678999999999999999863 3 2211 22357999999999876541 1245
Q ss_pred HHHHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHH-HHHHHcCCCCCCcce-EEEe
Q psy3270 299 ACERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVE-RALNDAKLDKGSIHD-VVLV 370 (655)
Q Consensus 299 ~~e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLv 370 (655)
+||++|+.++.. ....+.++... .+....++|++|+++++++++++++.+. +.|+.++.. .+++. |+|+
T Consensus 245 ~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLt 321 (371)
T TIGR01174 245 EAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLT 321 (371)
T ss_pred HHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEe
Confidence 799999999753 23456665443 3456799999999999999999999997 999998876 56776 9999
Q ss_pred cCccchHHHHHHHHhhhCCCcccCC------------CCchhHHHhHHHHH
Q psy3270 371 GGSIRIPKIQKMLQDFFNGKSLNLS------------INPDEAVAYGAAVQ 409 (655)
Q Consensus 371 GG~s~~p~v~~~l~~~f~~~~v~~~------------~~p~~ava~GAa~~ 409 (655)
||+|++|++++++++.|+ .+++.. -+|..++|.|.++|
T Consensus 322 GG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 322 GGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred ChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999999999999999994 433221 27889999998864
No 29
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=5.6e-23 Score=221.31 Aligned_cols=309 Identities=16% Similarity=0.183 Sum_probs=210.4
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.-.+-++.-++++++.||..+|.+++++++++|+..-..... -....+..-.+-.+....++..+.......+.
T Consensus 51 I~d~~~~~~aI~~av~~ae~~~g~~i~~v~v~i~g~~v~~~~~-----~~~~~~~~~~I~~~dv~~~~~~a~~~~~~~~~ 125 (420)
T PRK09472 51 VNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNE-----IGMVPISEEEVTQEDVENVVHTAKSVRVRDEH 125 (420)
T ss_pred EEcHHHHHHHHHHHHHHHHHHhCCcccEEEEEecCcceEEEee-----eEEEEcCCCeeCHHHHHHHHHHhhccCCCCCC
Confidence 3445667889999999999999999999999999874211000 00000011123444555566666555555555
Q ss_pred eEEEEeccccchhhH-HHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccc
Q psy3270 144 NVLIFDLGGGTFDVS-MREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~-l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~ 220 (655)
..+.+-+....+|.. .........|. .+.-.+++.|. ...+.+.+|++.||+++..++.||.|+|.++.....
T Consensus 126 ~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv~~~~----~~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e 201 (420)
T PRK09472 126 RILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHN----DMAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE 201 (420)
T ss_pred EEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEEEEch----HHHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh
Confidence 444444444444431 11112222333 23344566653 344555679999999999999999999999876543
Q ss_pred cCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Q psy3270 221 LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTAC 300 (655)
Q Consensus 221 ~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (655)
.+..++|+|+||||||++++. +| .+.. ....++||++|++.|...+. . ....|
T Consensus 202 --~~~gv~vvDiGggtTdisv~~--~G-~l~~---~~~i~~GG~~it~dIa~~l~--------i-----------~~~~A 254 (420)
T PRK09472 202 --RELGVCVVDIGGGTMDIAVYT--GG-ALRH---TKVIPYAGNVVTSDIAYAFG--------T-----------PPSDA 254 (420)
T ss_pred --hhcCeEEEEeCCCceEEEEEE--CC-EEEE---EeeeechHHHHHHHHHHHhC--------c-----------CHHHH
Confidence 577899999999999999997 34 2211 12256999999999976551 1 13569
Q ss_pred HHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHH-------HHHHcCCCCCCcceE
Q psy3270 301 ERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVER-------ALNDAKLDKGSIHDV 367 (655)
Q Consensus 301 e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V 367 (655)
|++|+.+... ....+.++...+.. ...++|.+|.+++++.++++++.+.+ .+..+++....+++|
T Consensus 255 E~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~gi 332 (420)
T PRK09472 255 EAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGI 332 (420)
T ss_pred HHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEE
Confidence 9999776431 23456665443322 24889999999999988777777765 456677777788999
Q ss_pred EEecCccchHHHHHHHHhhhCCCcccC------------CCCchhHHHhHHHHHHH
Q psy3270 368 VLVGGSIRIPKIQKMLQDFFNGKSLNL------------SINPDEAVAYGAAVQAA 411 (655)
Q Consensus 368 iLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ava~GAa~~a~ 411 (655)
+|+||+|++|+|++++++.| +.+++. ..+|.+++|.|.++++.
T Consensus 333 vLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 333 VLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred EEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 99999999999999999999 444432 23899999999999986
No 30
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.91 E-value=2.2e-23 Score=213.05 Aligned_cols=219 Identities=27% Similarity=0.444 Sum_probs=167.3
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
.-..++++||+.-+..+|+++.+|+..||.+.+.++.||.|||+..+.+-. .....||+|+||||||++++.. |..
T Consensus 92 ~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~--~~~g~miVDIG~GtTdiavisl--ggi 167 (326)
T PF06723_consen 92 FRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF--EPRGSMIVDIGGGTTDIAVISL--GGI 167 (326)
T ss_dssp S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT--SSS-EEEEEE-SS-EEEEEEET--TEE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC--CCCceEEEEECCCeEEEEEEEC--CCE
Confidence 467899999999999999999999999999999999999999999998744 6788999999999999999964 323
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----ceEEEEc--cccCC
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----EASLEID--ALHEG 323 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~i~i~--~~~~~ 323 (655)
..-.. ...||++||+.|.+|+.+++.-. +. ...||++|+.++... ...+.+. .+..|
T Consensus 168 v~s~s----i~~gG~~~DeaI~~~ir~~y~l~----Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tG 230 (326)
T PF06723_consen 168 VASRS----IRIGGDDIDEAIIRYIREKYNLL----IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITG 230 (326)
T ss_dssp EEEEE----ES-SHHHHHHHHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTT
T ss_pred EEEEE----EEecCcchhHHHHHHHHHhhCcc----cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCC
Confidence 33222 56899999999999998877421 11 134999999987532 2344443 35678
Q ss_pred cceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC-CCc--ceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 324 IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK-GSI--HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 324 ~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
.+..+.|+-+++.+.+.+.+.++.+.|+++|+...... .|| ++|+|+||+|+++++.++|++.+ +.++...-+|..
T Consensus 231 lP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~ 309 (326)
T PF06723_consen 231 LPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLT 309 (326)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTT
T ss_pred CcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHH
Confidence 88899999999999999999999999999999864221 132 46999999999999999999999 789999999999
Q ss_pred HHHhHHHHHH
Q psy3270 401 AVAYGAAVQA 410 (655)
Q Consensus 401 ava~GAa~~a 410 (655)
+||.||....
T Consensus 310 ~va~G~~~~l 319 (326)
T PF06723_consen 310 AVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 31
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.88 E-value=1.5e-21 Score=204.10 Aligned_cols=312 Identities=22% Similarity=0.286 Sum_probs=237.6
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCce-eeeccchhHHHHhhccccccCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV-LRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~-~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.+.--+.++..++++++.||.+.|..++++++++++.+...+. .--..-++. ..+-.++.-.++..+.......
T Consensus 48 ~I~di~~~~~sI~~av~~AE~mag~~i~~v~vs~sG~~i~s~~-----~~g~v~i~~~~eIt~~DI~rvl~~A~~~~~~~ 122 (418)
T COG0849 48 VIVDLDAAAQSIKKAVEAAERMAGCEIKSVIVSLSGNHIKSQN-----VNGEVSISEEKEITQEDIERVLEAAKAVAIPP 122 (418)
T ss_pred eEEcHHHHHHHHHHHHHHHHHhcCCCcceEEEEeccceeEEEe-----eEEEEEcCCCCccCHHHHHHHHHHHHhhccCC
Confidence 4555667889999999999999999999999999997643221 011122223 4444555666777777777777
Q ss_pred CeeEEEEeccccchhh-HHHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccc
Q psy3270 142 EKNVLIFDLGGGTFDV-SMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~-~l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~ 218 (655)
+...+-+-+.++.+|- .-+.+...+.|. .+.-.++|+|.. --+.+.+|.+.+|+++..++.+|.|+|.+...+
T Consensus 123 ~~~ilh~~p~~y~vD~~~~I~dP~gm~G~rL~v~vhvit~~~~----~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~ 198 (418)
T COG0849 123 EREILHVIPQEYIVDGQEGIKDPLGMSGVRLEVEVHVITGPKN----ILENLEKCVERAGLKVDNIVLEPLASALAVLTE 198 (418)
T ss_pred CceEEEEeeeEEEECCccccCCccccccceEEEEEEEEEcchH----HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCc
Confidence 7777777777777775 344444555554 466677888764 467899999999999999999999999999877
Q ss_pred cccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy3270 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRT 298 (655)
Q Consensus 219 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (655)
.. ++.+++++|+||||||+++++ +| .+ .+.+-.++||++++.+|..-|.-. +.
T Consensus 199 dE--kelGv~lIDiG~GTTdIai~~--~G-~l---~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~ 251 (418)
T COG0849 199 DE--KELGVALIDIGGGTTDIAIYK--NG-AL---RYTGVIPVGGDHVTKDIAKGLKTP-------------------FE 251 (418)
T ss_pred cc--HhcCeEEEEeCCCcEEEEEEE--CC-EE---EEEeeEeeCccHHHHHHHHHhCCC-------------------HH
Confidence 65 788999999999999999997 34 22 222336799999999998766322 23
Q ss_pred HHHHHHHhcCCC------CceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecC
Q psy3270 299 ACERAKRTLSSS------TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG 372 (655)
Q Consensus 299 ~~e~~K~~ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG 372 (655)
.||++|..+... ....+.++...+.. ...+||.++.+++++.+++++.+++..|++.++...-...|+|+||
T Consensus 252 ~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG 329 (418)
T COG0849 252 EAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGG 329 (418)
T ss_pred HHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECc
Confidence 599999988543 23445665543333 5689999999999999999999999999999998777889999999
Q ss_pred ccchHHHHHHHHhhhCCCcccC------------CCCchhHHHhHHHHHHHHH
Q psy3270 373 SIRIPKIQKMLQDFFNGKSLNL------------SINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 373 ~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ava~GAa~~a~~l 413 (655)
++.+|++.+..++.|+ .+++. ..+|.++.|.|..++++..
T Consensus 330 ~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 330 GAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred hhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 9999999999999993 43322 2368999999999998754
No 32
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.87 E-value=8e-21 Score=186.18 Aligned_cols=223 Identities=22% Similarity=0.377 Sum_probs=180.8
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
....++++||..-+..+|+++++|++.||.+.+.++.||.|||+..+..-. .+..-+|+|+||||||++++.+.+ .
T Consensus 100 ~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlgg--i 175 (342)
T COG1077 100 PKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGG--I 175 (342)
T ss_pred CCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecC--E
Confidence 344699999999999999999999999999999999999999999887644 566789999999999999998753 2
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC--------ceEEEEcccc
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST--------EASLEIDALH 321 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~--------~~~i~i~~~~ 321 (655)
..-. ...+||+.||+.|.+|+.++|+--.| .+ .||++|+...... +.++.-..+.
T Consensus 176 v~~~----Sirv~GD~~De~Ii~yvr~~~nl~IG------e~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~ 238 (342)
T COG1077 176 VSSS----SVRVGGDKMDEAIIVYVRKKYNLLIG------ER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLV 238 (342)
T ss_pred EEEe----eEEEecchhhHHHHHHHHHHhCeeec------HH-------HHHHHHHHhcccccccCCccceeeEEeeecc
Confidence 2211 15699999999999999877653222 22 3788888764321 1233344456
Q ss_pred CCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCC--CCCcce-EEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 322 EGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD--KGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 322 ~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
.|.+-.++++-++..+.+++.+++|++.++..|+...-. .+-++. ++|+||+|.+..+.+.+++.. +.++....+|
T Consensus 239 ~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~p 317 (342)
T COG1077 239 TGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDP 317 (342)
T ss_pred cCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCCh
Confidence 677888999999999999999999999999999986532 233455 999999999999999999998 7788888999
Q ss_pred hhHHHhHHHHHHHHHc
Q psy3270 399 DEAVAYGAAVQAAILS 414 (655)
Q Consensus 399 ~~ava~GAa~~a~~l~ 414 (655)
-.|||+|+......+.
T Consensus 318 L~~Va~G~G~~le~~~ 333 (342)
T COG1077 318 LTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHhccchhhhhhH
Confidence 9999999998876554
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.53 E-value=3.8e-15 Score=135.36 Aligned_cols=205 Identities=23% Similarity=0.336 Sum_probs=160.3
Q ss_pred EEEEe-ccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCC
Q psy3270 145 VLIFD-LGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 223 (655)
Q Consensus 145 ~~~~d-~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~ 223 (655)
.+++| +++-.+..++++.+|..+|..+....-++|..-.....+...+..+.||++++..++||+|||.-..++..
T Consensus 66 GiVvdf~eaveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg--- 142 (277)
T COG4820 66 GIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG--- 142 (277)
T ss_pred ceEEehhhHHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC---
Confidence 34455 45556677999999999999999999999999877778888889999999999999999999976665433
Q ss_pred CceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Q psy3270 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERA 303 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 303 (655)
.|+|+|||||-+|+++- | +|+.+ .|..-||.+++..|+-+ ++++ ..+||..
T Consensus 143 ----~VVDiGGGTTGIsi~kk--G---kViy~-ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~ 193 (277)
T COG4820 143 ----GVVDIGGGTTGISIVKK--G---KVIYS-ADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQY 193 (277)
T ss_pred ----cEEEeCCCcceeEEEEc--C---cEEEe-ccCCCCceeEEEEEecc--------cCcC-----------HhHHHHh
Confidence 79999999999999974 3 33333 35679999988766432 2333 2357777
Q ss_pred HHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHH
Q psy3270 304 KRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 383 (655)
Q Consensus 304 K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 383 (655)
|+.--.. +|.-..+.|.++++.+.+.+.++..+ +..+.|+||+|.-|.+.+..
T Consensus 194 Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~F 246 (277)
T COG4820 194 KRGHKKG----------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELF 246 (277)
T ss_pred hhccccc----------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHH
Confidence 7542111 12223467899999999999998766 45599999999999999999
Q ss_pred HhhhCCCcccCCCCchhHHHhHHHHH
Q psy3270 384 QDFFNGKSLNLSINPDEAVAYGAAVQ 409 (655)
Q Consensus 384 ~~~f~~~~v~~~~~p~~ava~GAa~~ 409 (655)
++.| +.++..+..|.+..-+|.|+-
T Consensus 247 e~~l-~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 247 EKQL-ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred HHHh-ccccccCCCcceechhhhhhc
Confidence 9999 889999999998888887753
No 34
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.31 E-value=2.2e-10 Score=121.32 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=127.2
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcc-----cccccCCCc-eEEEEEeCCceeEEEEEEEe
Q psy3270 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYG-----LDKNLKGEK-NVLIFDLGGGTFDVSVLAID 245 (655)
Q Consensus 172 ~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~-----~~~~~~~~~-~vlV~D~GggT~dvsv~~~~ 245 (655)
.-.++++| ....+.+.++++.||+++..+..+|.|.+-.+. .... .... +++++|+|+++|+++++.
T Consensus 134 ~v~v~a~~----~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~-- 206 (348)
T TIGR01175 134 QVLLAATR----KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLH-- 206 (348)
T ss_pred EEEEEEec----HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEE--
Confidence 34455554 567888899999999999999999999876653 1111 1233 499999999999999996
Q ss_pred CCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcc
Q psy3270 246 EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID 325 (655)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~ 325 (655)
+| .+.. .....+||.+|++.+.+.+ +.+ ..+||+.|...+....
T Consensus 207 ~g-~~~~---~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~------------- 250 (348)
T TIGR01175 207 PG-RMLF---TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL------------- 250 (348)
T ss_pred CC-eEEE---EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc-------------
Confidence 33 2211 1125699999999886433 222 2458888865432110
Q ss_pred eEEeecHHHHHHHhhHHHHhhhhHHHHHHHHc--CCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccC---------
Q psy3270 326 FYSKITRARFEELCMDLFRQTLAPVERALNDA--KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL--------- 394 (655)
Q Consensus 326 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~--------- 394 (655)
.-.+++++.++++...|.+.++.. ......++.|+|+||+++++.+.+.+++.| +.++..
T Consensus 251 --------~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 251 --------YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMAL 321 (348)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhccc
Confidence 012456677777777778877643 222345899999999999999999999999 333321
Q ss_pred ----------CCCchhHHHhHHHHHH
Q psy3270 395 ----------SINPDEAVAYGAAVQA 410 (655)
Q Consensus 395 ----------~~~p~~ava~GAa~~a 410 (655)
...|..++|.|+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1245678888888764
No 35
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.23 E-value=6.4e-10 Score=117.11 Aligned_cols=186 Identities=20% Similarity=0.312 Sum_probs=117.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHccccc-cc---CCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 174 AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDK-NL---KGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 174 ~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~-~~---~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
.++++| ....+...++++.|||++..+=-+|.|.+-.+.... .. .....++++|+|+.++.+.++. +| .
T Consensus 129 ll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g-~ 201 (340)
T PF11104_consen 129 LLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NG-K 201 (340)
T ss_dssp EEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TT-E
T ss_pred EEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CC-E
Confidence 445554 456677788999999999888777877655544321 11 1345799999999999999986 44 3
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEe
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSK 329 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~ 329 (655)
..... ...+||.++++.|.+.+.-.+ .+||+.|..-+-..
T Consensus 202 ~~f~R---~i~~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~------------------ 241 (340)
T PF11104_consen 202 PIFSR---SIPIGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE------------------ 241 (340)
T ss_dssp EEEEE---EES-SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT----------------------
T ss_pred EEEEE---EEeeCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc------------------
Confidence 22221 256999999999987642221 24677766522100
Q ss_pred ecHHHHHHHhhHHHHhhhhHHHHHHHH--cCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc---------CCC--
Q psy3270 330 ITRARFEELCMDLFRQTLAPVERALND--AKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN---------LSI-- 396 (655)
Q Consensus 330 itr~~~e~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~---------~~~-- 396 (655)
+...+.+.+.++++...|.+.++- +......|+.|+|+||++++|++.+.|++.| +.++. .+.
T Consensus 242 ---~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~ 317 (340)
T PF11104_consen 242 ---EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKI 317 (340)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCccc
Confidence 233456677777777777777763 2234557999999999999999999999999 44322 111
Q ss_pred --------CchhHHHhHHHHHH
Q psy3270 397 --------NPDEAVAYGAAVQA 410 (655)
Q Consensus 397 --------~p~~ava~GAa~~a 410 (655)
.|..++|.|.|+++
T Consensus 318 ~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 318 NSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhhHHHHHHHHhhcC
Confidence 36789999999875
No 36
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.21 E-value=3.6e-11 Score=128.50 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=145.5
Q ss_pred cceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-..+++++|..++..+|+.+.+. .+..|+..+.++++|.+|+++++. .+.+|+|+|+++|+++.+. +|..
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~--~G~~ 165 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVY--DGYV 165 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEE--CCEE
Confidence 46799999999998888888775 667999999999999999999864 5679999999999998875 3412
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---Cce-----------EE
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---TEA-----------SL 315 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---~~~-----------~i 315 (655)
+ ........+||.++|+.|.+++..... ..+.. .-...++.+|+.+..- ... ..
T Consensus 166 ~--~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (371)
T cd00012 166 L--PHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLE 233 (371)
T ss_pred c--hhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccc
Confidence 1 122234679999999999998854321 00111 1122356666654321 000 00
Q ss_pred EEccccCCcceEEeecHHHHH---HHhhHH-----HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARFE---ELCMDL-----FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~e---~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
....+.++. .+.++.+.|. .++.|. ...+.+.|.+++.....+ ..-.+.|+|+||+|++|++.++|.+
T Consensus 234 ~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~ 311 (371)
T cd00012 234 KTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQK 311 (371)
T ss_pred eeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHH
Confidence 001122222 3445544331 233332 236778888888776432 3346789999999999999999998
Q ss_pred hhCCC---------cccCCCCchhHHHhHHHHHHHH
Q psy3270 386 FFNGK---------SLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 386 ~f~~~---------~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+... .+....+|..++-+||+++|..
T Consensus 312 el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 312 ELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88311 2234568889999999999853
No 37
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.20 E-value=1.7e-10 Score=121.00 Aligned_cols=209 Identities=16% Similarity=0.217 Sum_probs=136.9
Q ss_pred cceEE--EEeCCCCCHHHH-HHHHHHHHHc------------CCcceeecChHHHHHHHcccccc------cCCCceEEE
Q psy3270 171 VSEAV--ITVPAYFNDSQR-QATKDAGSIA------------GLNVLRIINEPTAAALAYGLDKN------LKGEKNVLI 229 (655)
Q Consensus 171 ~~~~v--itVPa~~~~~~r-~~~~~a~~~A------------Gl~~~~li~Ep~Aaal~~~~~~~------~~~~~~vlV 229 (655)
+.+++ ...|..+...++ ..+++..... -+..+.++.||.+|.+.+..... ......++|
T Consensus 110 ~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilv 189 (344)
T PRK13917 110 VVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSV 189 (344)
T ss_pred cceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEE
Confidence 44444 588888754443 5566554321 12447789999999887765422 123457899
Q ss_pred EEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC
Q psy3270 230 FDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS 309 (655)
Q Consensus 230 ~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~ 309 (655)
+|+|+||||++++. ++ .+ +...++....|..++.+.|.+++.... ++..+. .. + ++++ |..
T Consensus 190 IDIG~~TtD~~v~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~~---~----ie~~---l~~ 250 (344)
T PRK13917 190 IDFGSGTTDLDTIQ--NL-KR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--PY---M----LEKG---LEY 250 (344)
T ss_pred EEcCCCcEEEEEEe--Cc-EE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--HH---H----HHHH---HHc
Confidence 99999999999986 23 22 233344467899999999888875332 222221 11 1 2222 211
Q ss_pred CCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCC
Q psy3270 310 STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389 (655)
Q Consensus 310 ~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 389 (655)
. .+.+. .+.. +.+ ++++.++++++++++.+.+...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 12221 1111 122 4567788999999998888888754 3478999999999987 88999999964
Q ss_pred CcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 390 KSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 390 ~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
+....||..|.|+|...+|..+.+
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHhc
Confidence 356679999999999999986654
No 38
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.13 E-value=1.1e-10 Score=124.75 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=137.4
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-..+++|.|...+..+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++|+++.+. +|..
T Consensus 95 ~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~--~G~~ 165 (373)
T smart00268 95 EHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVV--DGYV 165 (373)
T ss_pred cCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEE--CCEE
Confidence 357899999999999999998886 5679999999999999999886 34679999999999999886 3412
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---C--------------c
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---T--------------E 312 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---~--------------~ 312 (655)
+ ........+||.++|+.|.+++...- ...... .-...++.+|+.+..- . .
T Consensus 166 ~--~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (373)
T smart00268 166 L--PHAIKRIDIAGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSK 233 (373)
T ss_pred c--hhhheeccCcHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccc
Confidence 1 12222357999999999998875510 011110 1122355555543210 0 0
Q ss_pred eEEEEccccCCcceEEeecHHHH-HHHhhHH-----HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARF-EELCMDL-----FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQ 384 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~-e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~ 384 (655)
..... .+.++..+.+...|-.. |.++.|. ...+.+.|.+++..+..+ ..-.+.|+|+||+|++|++.++|.
T Consensus 234 ~~~~~-~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 234 LEKTY-ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred cceeE-ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 00011 12233333222122111 1223331 235677778888765422 223467999999999999999999
Q ss_pred hhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 385 DFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 385 ~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
+.+... .+..+.++..++=.||+++|.
T Consensus 313 ~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 313 KELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 887211 223334566777778877764
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.03 E-value=2.2e-09 Score=111.89 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=128.5
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHc---------CCcceeecChHHHHHHHcccccc--cCCCceEEEEEeCCceeE
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIA---------GLNVLRIINEPTAAALAYGLDKN--LKGEKNVLIFDLGGGTFD 238 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~A---------Gl~~~~li~Ep~Aaal~~~~~~~--~~~~~~vlV~D~GggT~d 238 (655)
.+..+|+..|..+...++..+++..... -+..+.+++||.+|.+.+..... ......++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4667999999999988999998876532 33567899999999887755321 124567899999999999
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEc
Q psy3270 239 VSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318 (655)
Q Consensus 239 vsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~ 318 (655)
+.++. ++ .+ +...++....|-.++-+.|.+.+.+++ +.+...+...+ +.+ |..... +.+
T Consensus 181 ~~~~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i-------~~~---l~~g~~--~~~- 239 (320)
T TIGR03739 181 WLVAR--GM-RL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRI-------DLA---LRTGKQ--PRI- 239 (320)
T ss_pred eehcc--CC-EE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHH-------HHH---HHhCCc--eee-
Confidence 98774 33 33 344455566887777777777665544 33211111111 111 111110 011
Q ss_pred cccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCc
Q psy3270 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398 (655)
Q Consensus 319 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p 398 (655)
.+.. +.|+ +.+ +..+..+++++..+.+.+. ...+++.|+|+||++. .+++.|++.|+...+....||
T Consensus 240 ---~gk~--~di~-~~~-~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQKP--VDIK-RCL-ELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---ccee--cCch-HHH-HHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 0111 1222 112 2333344444444444332 1245889999999998 468999999976555566799
Q ss_pred hhHHHhHHHHHH
Q psy3270 399 DEAVAYGAAVQA 410 (655)
Q Consensus 399 ~~ava~GAa~~a 410 (655)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 40
>KOG0100|consensus
Probab=99.03 E-value=9.9e-11 Score=117.37 Aligned_cols=54 Identities=85% Similarity=1.291 Sum_probs=49.0
Q ss_pred HHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 105 RQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 105 r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
|+++.+|..+|||+++++||||+|||++||++. ...+.+.+++|+|||+|+.+|
T Consensus 188 rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK-k~gEknilVfDLGGGTFDVSl 241 (663)
T KOG0100|consen 188 RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK-KDGEKNILVFDLGGGTFDVSL 241 (663)
T ss_pred HhhhcccceeccceEEEeecCccHHHHHhcccc-cCCcceEEEEEcCCceEEEEE
Confidence 678999999999999999999999999999985 456789999999999999864
No 41
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.85 E-value=2.3e-08 Score=107.94 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=133.7
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..++++.|..++...|+.+.+.+ +..|++.+.++++|.+|+++++.. +-+|+|+|.+.|.++-+. +|
T Consensus 93 ~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVVD~G~~~t~v~pV~--dG- 162 (393)
T PF00022_consen 93 SDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVVDIGYSSTSVVPVV--DG- 162 (393)
T ss_dssp GGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEEEESSS-EEEEEEE--TT-
T ss_pred ccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------cccccccceeeeeeeeee--ec-
Confidence 3467999999999999999888765 577999999999999999988754 459999999999988764 44
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHh---hcccccc----ccHHHHHHHHHHHHHHHHhc--------------
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKR---KHKKDIL----ANTRAVRRLRTACERAKRTL-------------- 307 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~---~~~~~~~----~~~~~~~~l~~~~e~~K~~l-------------- 307 (655)
.. +........+||.++++.|.+.+.++-.. .+...-. ...-....-....+.+|+.+
T Consensus 163 ~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~ 241 (393)
T PF00022_consen 163 YV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQ 241 (393)
T ss_dssp EE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHH
T ss_pred cc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccc
Confidence 21 11112235699999999998888773100 0000000 00000001111223333322
Q ss_pred -CCCCceEEEEccccCCcceEEeecHHHHH---HHhhHHHH------------hhhhHHHHHHHHcCCCC--CCcceEEE
Q psy3270 308 -SSSTEASLEIDALHEGIDFYSKITRARFE---ELCMDLFR------------QTLAPVERALNDAKLDK--GSIHDVVL 369 (655)
Q Consensus 308 -s~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~~------------~i~~~i~~~l~~~~~~~--~~i~~ViL 369 (655)
+......+.+ .++. .+.+..+.|. -++.|... .+.+.|.+++..+..+. .-.+.|+|
T Consensus 242 ~~~~~~~~~~l---Pdg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl 316 (393)
T PF00022_consen 242 ASENPEKSYEL---PDGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVL 316 (393)
T ss_dssp HCSTTTEEEE----TTSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEE
T ss_pred cccccceeccc---cccc--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEE
Confidence 1222233333 2343 3344443332 23333221 46677788887765332 22578999
Q ss_pred ecCccchHHHHHHHHhhhCC-------CcccCCC-CchhHHHhHHHHHHH
Q psy3270 370 VGGSIRIPKIQKMLQDFFNG-------KSLNLSI-NPDEAVAYGAAVQAA 411 (655)
Q Consensus 370 vGG~s~~p~v~~~l~~~f~~-------~~v~~~~-~p~~ava~GAa~~a~ 411 (655)
+||+|++|++.++|.+.+.. .++..+. +|..++=.||+++|.
T Consensus 317 ~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 317 TGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp ESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred ecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 99999999999999888722 1233344 789999999999985
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.3e-09 Score=119.49 Aligned_cols=71 Identities=73% Similarity=1.023 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCC
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYF 182 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~ 182 (655)
.||+++.+|+++|||+++++++||+|||+.|+++.. .+..+++||+|||+|+.+|.+... | ++.|++.-
T Consensus 134 ~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~~---g------~~ev~at~ 202 (579)
T COG0443 134 AQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIGD---G------VFEVLATG 202 (579)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEcC---C------EEEEeecC
Confidence 369999999999999999999999999999999877 788999999999999998776541 1 67777765
Q ss_pred CH
Q psy3270 183 ND 184 (655)
Q Consensus 183 ~~ 184 (655)
.+
T Consensus 203 gd 204 (579)
T COG0443 203 GD 204 (579)
T ss_pred CC
Confidence 43
No 43
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.77 E-value=5.9e-08 Score=105.03 Aligned_cols=204 Identities=18% Similarity=0.164 Sum_probs=130.3
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHccccccc---CCCceEEEEEeCCceeEEEEEEEeC
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNL---KGEKNVLIFDLGGGTFDVSVLAIDE 246 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~---~~~~~vlV~D~GggT~dvsv~~~~~ 246 (655)
-..+++|.|..++..+|+.+.+.+ +..+.+-+.+..+|.++++++...... ....+-+|+|+|.|+|+++-+. +
T Consensus 102 ~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~ 179 (414)
T PTZ00280 102 EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--D 179 (414)
T ss_pred CCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--C
Confidence 346899999999999999998876 455899999999999999887432211 0123569999999999998775 2
Q ss_pred CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC---------------
Q psy3270 247 GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST--------------- 311 (655)
Q Consensus 247 ~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~--------------- 311 (655)
|..+ ........+||.++|+.|.+++.+.. ..+... ..+..++.+|+.+..-.
T Consensus 180 G~~l--~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 247 (414)
T PTZ00280 180 GYVI--GSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPK 247 (414)
T ss_pred CEEc--ccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcc
Confidence 4111 11112246999999999999875421 111110 11223566666653210
Q ss_pred --ceEEEEccccCCcceEEeecHHHHH---HHhhHHH------HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHH
Q psy3270 312 --EASLEIDALHEGIDFYSKITRARFE---ELCMDLF------RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPK 378 (655)
Q Consensus 312 --~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~ 378 (655)
...+..+...++....+.+..+.|. -++.|-+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|+
T Consensus 248 ~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~G 327 (414)
T PTZ00280 248 NHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKG 327 (414)
T ss_pred cccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcC
Confidence 0112222222233445677776664 2444522 14567777777766433 234577999999999999
Q ss_pred HHHHHHhhhC
Q psy3270 379 IQKMLQDFFN 388 (655)
Q Consensus 379 v~~~l~~~f~ 388 (655)
+.++|++.+.
T Consensus 328 f~eRL~~El~ 337 (414)
T PTZ00280 328 FDKRLQRDVR 337 (414)
T ss_pred HHHHHHHHHH
Confidence 9999998883
No 44
>KOG0103|consensus
Probab=98.75 E-value=3.8e-08 Score=106.04 Aligned_cols=147 Identities=35% Similarity=0.485 Sum_probs=102.6
Q ss_pred cccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHH
Q psy3270 135 LDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 214 (655)
Q Consensus 135 ~~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~ 214 (655)
+.+++.++.+...-.+.-+.+..+|+..++..+..++.++||+||+||++.||+++.+||+.|||++++|++|.+|+|++
T Consensus 101 i~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ 180 (727)
T KOG0103|consen 101 IKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALA 180 (727)
T ss_pred eeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhh
Confidence 33444444444444444456667899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEEEEeCCce---eEEEEEEEeCCceEEEEE---ecCCCCCCcchHH-----HHHHHHHHHHHHhhcc
Q psy3270 215 YGLDKNLKGEKNVLIFDLGGGT---FDVSVLAIDEGSLFQVKS---TAGDTHLGGEDFD-----NRLVTFFADEFKRKHK 283 (655)
Q Consensus 215 ~~~~~~~~~~~~vlV~D~GggT---~dvsv~~~~~~~~~~v~~---~~~~~~lGG~~~d-----~~l~~~~~~~~~~~~~ 283 (655)
||..++ |+-+.. ..+.++.++.. .+.+-. ..|....=+..+| +.+-+.+.+.|..+++
T Consensus 181 ygiyKt----------DLP~~~ekpr~v~fvD~GHS-~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk 249 (727)
T KOG0103|consen 181 YGIYKT----------DLPENEEKPRNVVFVDIGHS-SYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFK 249 (727)
T ss_pred cccccc----------cCCCcccCcceEEEEecccc-cceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhc
Confidence 999876 222222 23444444333 222221 2244445577788 4556667777777777
Q ss_pred ccccccHHH
Q psy3270 284 KDILANTRA 292 (655)
Q Consensus 284 ~~~~~~~~~ 292 (655)
.....+.+.
T Consensus 250 ~kykidv~s 258 (727)
T KOG0103|consen 250 TKYKIDVRS 258 (727)
T ss_pred cccccchhh
Confidence 655544433
No 45
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.70 E-value=1.1e-08 Score=115.79 Aligned_cols=58 Identities=69% Similarity=1.111 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 102 DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 102 ~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
+.||+++.+||++|||+++++|+||+|||++|+++.. .+..+++||+|||+++.++.+
T Consensus 173 ~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 173 DAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred hHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEEEEEE
Confidence 4699999999999999999999999999999998643 467899999999999986543
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.67 E-value=7.3e-08 Score=100.25 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=99.3
Q ss_pred cceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHH
Q psy3270 200 NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279 (655)
Q Consensus 200 ~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~ 279 (655)
..+.+++||.||.+.+... ..+...++|+|+||+|+|++++. ++ .-.+....+...+|-..+...+.+.+.. .
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~--~~~~~~~lVVDIGG~T~Dv~~v~--~~-~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD--LDEDESVLVVDIGGRTTDVAVVR--GG-LPDISKCSGTPEIGVSDLYDAIAQALRS-A- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT--S-TTSEEEEEEE-SS-EEEEEEE--GG-G--EEEEEEETTSSTHHHHHHHHHHTT----
T ss_pred eeEEEEcccHHHHHHHHHh--hcccCcEEEEEcCCCeEEeeeec--CC-ccccchhccCCchhHHHHHHHHHHHHHH-h-
Confidence 4678899999999887655 33456799999999999999986 22 2223333444578888888888776644 1
Q ss_pred hhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCC
Q psy3270 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 359 (655)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~ 359 (655)
+... +... ++.+-.. ...... +....... -..+++.+.++..++++.+.|.+.+..
T Consensus 214 ---~~~~--s~~~-------~~~ii~~--~~~~~~--~~~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~--- 269 (318)
T PF06406_consen 214 ---GIDT--SELQ-------IDDIIRN--RKDKGY--LRQVINDE-----DVIDDVSEVIEEAVEELINRILRELGD--- 269 (318)
T ss_dssp ---SBHH--HHHH-------HHHHHHT--TT-HHH--HHHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ---cCCC--cHHH-------HHHHHHh--hhccce--ecccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 1110 0011 1111000 000000 00000000 123445555555566666655555543
Q ss_pred CCCCcceEEEecCccchHHHHHHHHhhhC--CCcccCCCCchhHHHhHHH
Q psy3270 360 DKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAA 407 (655)
Q Consensus 360 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa 407 (655)
..+++.|+||||++.+ +.+.|++.|+ ...+...-||.+|.|+|-+
T Consensus 270 -~~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 -FSDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -hccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3467899999999975 7899999985 3466777899999999964
No 47
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.66 E-value=7.1e-08 Score=109.17 Aligned_cols=88 Identities=55% Similarity=0.837 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLI 147 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~ 147 (655)
.++..+.+.+..........-+-.+ |+||++.||+++.+||++|||+++++|+||+|||+.|+++.. .+..+++
T Consensus 132 ~iL~~lk~~ae~~lg~~v~~~VITV----Pa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV 205 (616)
T PRK05183 132 EILKALRQRAEETLGGELDGAVITV----PAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAV 205 (616)
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEE----CCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEE
Confidence 4556666666665555555567777 999999999999999999999999999999999999998643 3678899
Q ss_pred EeccccchhhHHHH
Q psy3270 148 FDLGGGTFDVSMRE 161 (655)
Q Consensus 148 ~d~g~~~~~~~l~~ 161 (655)
+|+|||+++.++.+
T Consensus 206 ~DlGGGT~DvSv~~ 219 (616)
T PRK05183 206 YDLGGGTFDISILR 219 (616)
T ss_pred EECCCCeEEEEEEE
Confidence 99999999975543
No 48
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.66 E-value=1.8e-08 Score=112.96 Aligned_cols=60 Identities=58% Similarity=0.894 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++++||++|||+++++++||+|||++|+++.. .+...+++|+|||+++.++.+
T Consensus 152 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 152 FNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEE
Confidence 899999999999999999999999999999999998753 345789999999999986544
No 49
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.63 E-value=2.4e-08 Score=113.54 Aligned_cols=60 Identities=77% Similarity=1.161 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++++||++|||+++++|+||+|||++|+++.. .+..++++|+||++++.++.+
T Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 146 FNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEEEEEE
Confidence 889999999999999999999999999999999998653 467899999999999986544
No 50
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.62 E-value=2.6e-08 Score=113.60 Aligned_cols=59 Identities=88% Similarity=1.235 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 102 DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 102 ~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
+.||+++.+||++|||+++++++||+|||+.|++......+..++++|+|+++++.++.
T Consensus 153 ~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (653)
T PTZ00009 153 DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLL 211 (653)
T ss_pred HHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEE
Confidence 57999999999999999999999999999999987665567889999999999997553
No 51
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.61 E-value=2.8e-08 Score=112.17 Aligned_cols=61 Identities=69% Similarity=1.072 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 99 YFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 99 ~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
||++.||+++.+||++|||+++++++||+|||+.|+++.. .+..++++|+||++++.++.+
T Consensus 139 ~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 139 YFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEEEEEE
Confidence 6999999999999999999999999999999999998753 567899999999999986543
No 52
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.61 E-value=2.9e-08 Score=113.11 Aligned_cols=60 Identities=78% Similarity=1.166 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|++.||+++.+||++|||+++++++||+|||++|++... ..+...++||+|||+++.++.
T Consensus 144 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 144 FTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEE
Confidence 889999999999999999999999999999999998653 345678999999999997543
No 53
>PTZ00004 actin-2; Provisional
Probab=98.60 E-value=2.4e-07 Score=99.04 Aligned_cols=216 Identities=15% Similarity=0.191 Sum_probs=135.9
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..++..+|+.+.+.+ +..|+..+.++.+|.+++++++. .+-+|+|+|.++|+++-+. +|.
T Consensus 100 ~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~--dG~ 170 (378)
T PTZ00004 100 EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGY 170 (378)
T ss_pred ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEE--CCE
Confidence 3456889999999999998887765 66799999999999999988753 3559999999999998765 331
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC---------------C--
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS---------------T-- 311 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~---------------~-- 311 (655)
.+ ........+||.++|+.|.+.+... +..+.. .. -...++.+|+.+..- .
T Consensus 171 ~l--~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~ 238 (378)
T PTZ00004 171 SL--PHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKY 238 (378)
T ss_pred Ee--ecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCcccc
Confidence 11 1222235799999999998887432 111111 00 111244455443210 0
Q ss_pred ceEEEEccccCCcceEEeecHHHHH---HHhhHH------HHhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHH
Q psy3270 312 EASLEIDALHEGIDFYSKITRARFE---ELCMDL------FRQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQ 380 (655)
Q Consensus 312 ~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~ 380 (655)
...+. +.+|.. +.+..+.|. -++.|- ...+.+.|.+++..+..+ ..-...|+|+||+|.+|++.
T Consensus 239 ~~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 313 (378)
T PTZ00004 239 EESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLP 313 (378)
T ss_pred ceEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHH
Confidence 11122 233433 344554442 344543 224556677777766432 23357799999999999999
Q ss_pred HHHHhhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 381 KMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 381 ~~l~~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
++|...+... ++..+.++..++=+||+++|.
T Consensus 314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9999887211 223344566777778877764
No 54
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.58 E-value=3.8e-08 Score=112.16 Aligned_cols=60 Identities=75% Similarity=1.156 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|+... ..+...+++|+|||+++.++..
T Consensus 185 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 185 FNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK--NDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhcccc--CCCcEEEEEeCCCCeEEEEEEE
Confidence 89999999999999999999999999999999999864 3467899999999999986543
No 55
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.57 E-value=7.8e-07 Score=89.30 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=103.7
Q ss_pred ecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhcc
Q psy3270 204 IINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283 (655)
Q Consensus 204 li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~ 283 (655)
.++|.+|-+.....-.+ . .-.|+|+||..+-+.+++ +| ...-.........|+..|.+.+.+.+ +
T Consensus 74 ~~~ei~~~~~g~~~~~~--~--~~~vidiGgqd~k~i~~~--~g-~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~ 138 (248)
T TIGR00241 74 IVTEISCHGKGANYLAP--E--ARGVIDIGGQDSKVIKID--DG-KVDDFTMNDKCAAGTGRFLEVTARRL--------G 138 (248)
T ss_pred ceEEhhHHHHHHHHHCC--C--CCEEEEecCCeeEEEEEC--CC-cEeeeeecCcccccccHHHHHHHHHc--------C
Confidence 56787776655433222 1 225999999988887776 55 33333345556778888888887664 2
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcC----CCCceEEEEccc-cCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcC
Q psy3270 284 KDILANTRAVRRLRTACERAKRTLS----SSTEASLEIDAL-HEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 358 (655)
Q Consensus 284 ~~~~~~~~~~~~l~~~~e~~K~~ls----~~~~~~i~i~~~-~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 358 (655)
.++ .+++.+|..-. -+..+.+..+.- ... +....++ ++++..+++.+...+.+.+...+
T Consensus 139 ~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 139 VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC
Confidence 221 12333332211 111122221110 000 0001222 45666777777776666665443
Q ss_pred CCCCCcc-eEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 359 LDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 359 ~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
++ .|+|+||.+++|++.+.+++.+ +.++..+.+|..+.|+|||+
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 34 6999999999999999999999 78888888999999999997
No 56
>PTZ00281 actin; Provisional
Probab=98.57 E-value=2.8e-07 Score=98.35 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=136.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..+...+|+.+.+. .+..++.-+.+...|.+++++++. .+-+|+|+|.+.|.++-+.- |.
T Consensus 100 ~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~d--G~ 170 (376)
T PTZ00281 100 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIYE--GY 170 (376)
T ss_pred ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEEe--cc
Confidence 346788898999999999998885 466788999999999999988753 35699999999999875542 31
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCC----------------c
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----------------E 312 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----------------~ 312 (655)
. +........+||.++++.|.+.+... +..+.. .. -+..++.+|+.+..-. .
T Consensus 171 ~--~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~ 238 (376)
T PTZ00281 171 A--LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALE 238 (376)
T ss_pred c--chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccc
Confidence 1 11222235799999999998877442 111111 00 0123555665542100 0
Q ss_pred eEEEEccccCCcceEEeecHHHH---HHHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARF---EELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
..+. +.++.. +.+..+.| |.++.|.+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|++.++
T Consensus 239 ~~y~---LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 313 (376)
T PTZ00281 239 KSYE---LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 313 (376)
T ss_pred eeEE---CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHH
Confidence 1111 233332 34554433 23344422 13556677777665432 2235679999999999999999
Q ss_pred HHhhhCCC-------cccCCCCchhHHHhHHHHHHH
Q psy3270 383 LQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 383 l~~~f~~~-------~v~~~~~p~~ava~GAa~~a~ 411 (655)
|+..+... ++..+.++..++=+|++++|+
T Consensus 314 L~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 314 MNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 98887211 233344667788888888875
No 57
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.56 E-value=4.7e-08 Score=111.29 Aligned_cols=61 Identities=80% Similarity=1.263 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 99 YFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 99 ~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
+|++.||+++.+||++|||+++++++||+|||++|++... .+..+++||+||++++.++.+
T Consensus 143 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 143 YFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEE
Confidence 6999999999999999999999999999999999998763 568899999999999976543
No 58
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.56 E-value=4.6e-06 Score=83.08 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccc-ccc-C--CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCC
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNL-K--GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTH 260 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~-~~~-~--~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~ 260 (655)
+......+|.+.|||....+=-|..|.--+|... .+. . ...+++|+|+|+..+.+.++.-+.. + ...+..
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~-----l-y~r~~~ 222 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKI-----L-YTREVP 222 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCee-----e-eEeecc
Confidence 3455667899999999988888888876655421 111 1 1224789999999999999873322 1 122367
Q ss_pred CCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhh
Q psy3270 261 LGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCM 340 (655)
Q Consensus 261 lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~ 340 (655)
+||+.++..+.+.+ +.+. ..++.+|....... +--.+...
T Consensus 223 ~g~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~ 262 (354)
T COG4972 223 VGTDQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLR 262 (354)
T ss_pred CcHHHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHH
Confidence 99999999886543 2221 23666775543222 11235566
Q ss_pred HHHHhhhhHHHHHHHHc--CCCCCCcceEEEecCccchHHHHHHHHhhh
Q psy3270 341 DLFRQTLAPVERALNDA--KLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 341 ~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
++++.+.+.|.+.|+-. .-...+|+.|+|.||++.+-++.+.+.+.+
T Consensus 263 ~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 263 PFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 67777777777776642 223457999999999999999999999998
No 59
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.54 E-value=6e-08 Score=110.63 Aligned_cols=59 Identities=75% Similarity=1.160 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
|++.||+++.+||++|||+++++++||+|||++|+.+.. .+...++||+||++++.++.
T Consensus 183 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 183 FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDVSVL 241 (673)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEE
Confidence 889999999999999999999999999999999998653 45789999999999997654
No 60
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.53 E-value=6.3e-08 Score=109.84 Aligned_cols=61 Identities=80% Similarity=1.207 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|++... ..+..++++|+||++++.++..
T Consensus 141 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 141 FNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEE
Confidence 889999999999999999999999999999999998653 4568899999999999986543
No 61
>KOG0102|consensus
Probab=98.52 E-value=3.6e-08 Score=103.15 Aligned_cols=57 Identities=77% Similarity=1.127 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
.||+++.+|.+++||++++++|||+||++.||++... .....++|+|+++|+.++.+
T Consensus 174 sqRqaTkdag~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdisile 230 (640)
T KOG0102|consen 174 SQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDISILE 230 (640)
T ss_pred HHHHHhHhhhhhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeeeeeh
Confidence 3899999999999999999999999999999998765 67789999999999976543
No 62
>PTZ00452 actin; Provisional
Probab=98.50 E-value=1.2e-06 Score=93.20 Aligned_cols=216 Identities=16% Similarity=0.193 Sum_probs=135.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..++..+|+.+.+.. +.-+.+.+.+.+.|.+++++++. .+-+|+|+|.|.++++-+. +|.
T Consensus 99 ~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~--dG~ 169 (375)
T PTZ00452 99 EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVF--EGH 169 (375)
T ss_pred ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEE--CCE
Confidence 3467899999999999999988765 56788889999999999988753 3559999999999998765 341
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCC----------------Cc
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----------------TE 312 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----------------~~ 312 (655)
.+ ........+||.++++.|.+.+.+. +..+... .. +..++.+|+.+..- ..
T Consensus 170 ~l--~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 237 (375)
T PTZ00452 170 QI--PQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQD 237 (375)
T ss_pred Ee--ccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcC
Confidence 11 1222235699999999888877431 1111110 00 11234444443211 01
Q ss_pred eEEEEccccCCcceEEeecHHHHH---HHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHH
Q psy3270 313 ASLEIDALHEGIDFYSKITRARFE---ELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKM 382 (655)
Q Consensus 313 ~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 382 (655)
..+. +.+|. .+.+..+.|. -++.|.+ ..+.+.|.+++..+... ..-...|+|+||+|.+|++.++
T Consensus 238 ~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 312 (375)
T PTZ00452 238 SPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANR 312 (375)
T ss_pred ceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHH
Confidence 1122 23343 3455555552 2333422 23456677777765432 3345789999999999999999
Q ss_pred HHhhhCC-----Cc--ccCCCCchhHHHhHHHHHHH
Q psy3270 383 LQDFFNG-----KS--LNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 383 l~~~f~~-----~~--v~~~~~p~~ava~GAa~~a~ 411 (655)
|++.+.. .+ +..+.++..++=+|++++|.
T Consensus 313 L~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 313 LSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9888721 12 22334555677778888774
No 63
>PTZ00466 actin-like protein; Provisional
Probab=98.50 E-value=9.9e-07 Score=94.07 Aligned_cols=218 Identities=15% Similarity=0.164 Sum_probs=135.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|=|..++..+|+.+.+.+ +.-|++-+.+.+.|.+|+++++. .+-+|+|+|.+.|.++-+. +|.
T Consensus 105 ~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglVVD~G~~~t~v~PV~--~G~ 175 (380)
T PTZ00466 105 EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGTVLDCGDGVCHCVSIY--EGY 175 (380)
T ss_pred ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEEEeCCCCceEEEEEE--CCE
Confidence 3566888999999999999987764 66788889999999999988753 3569999999999987664 341
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC---C----------CceEE
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS---S----------TEASL 315 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~---~----------~~~~i 315 (655)
.+ ........+||.++++.|.+.+.+. .+..+.. .-+..++.+|+.+.. + .....
T Consensus 176 ~~--~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 243 (380)
T PTZ00466 176 SI--TNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTL 243 (380)
T ss_pred Ee--ecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhCeEecCChHHHHhhccccccce
Confidence 21 1222235799999999998877431 1111111 112224455554421 0 00001
Q ss_pred EEccccCCcceEEeecHHHH---HHHhhHHH-----HhhhhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARF---EELCMDLF-----RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
.. .+.+|.. +.+..+.| |-++.|-+ ..+.+.|.+.+..+..+ ..-...|+|+||+|.+|++.++|+.
T Consensus 244 ~y-~LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 244 PY-ILPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eE-ECCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 11 1233332 34555554 23333321 13456667777665433 2345789999999999999999998
Q ss_pred hhCCC-----c--ccCCCCchhHHHhHHHHHHH
Q psy3270 386 FFNGK-----S--LNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 386 ~f~~~-----~--v~~~~~p~~ava~GAa~~a~ 411 (655)
.+... + +..+.++..++=+|++++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 87221 1 23334566777788888874
No 64
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.49 E-value=5.4e-07 Score=94.91 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEE
Q psy3270 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIF 148 (655)
Q Consensus 69 v~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~ 148 (655)
.+..+|+++...+.... ..-..+|+++|++|++.+|+++.+|++.+|++.+.++++|+||+++++.+. ..+.+.+++
T Consensus 77 ~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lvv 153 (334)
T PRK13927 77 VTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPV--TEPTGSMVV 153 (334)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcc--cCCCeEEEE
Confidence 34556666655443332 122489999999999999999999999999999999999999999998854 345678999
Q ss_pred eccccchhhHH
Q psy3270 149 DLGGGTFDVSM 159 (655)
Q Consensus 149 d~g~~~~~~~l 159 (655)
|+|+++++..+
T Consensus 154 DiGggttdvs~ 164 (334)
T PRK13927 154 DIGGGTTEVAV 164 (334)
T ss_pred EeCCCeEEEEE
Confidence 99999999754
No 65
>CHL00094 dnaK heat shock protein 70
Probab=98.49 E-value=9.6e-08 Score=108.48 Aligned_cols=60 Identities=80% Similarity=1.204 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 100 FNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 100 f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
|++.||+++.+||++|||+++++++||+|||++|+.+.. .+.+.+++|+|||+++.++.+
T Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 146 FNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEEEEEE
Confidence 789999999999999999999999999999999998643 457899999999999986543
No 66
>KOG0101|consensus
Probab=98.47 E-value=1.3e-07 Score=102.82 Aligned_cols=58 Identities=84% Similarity=1.174 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
.||+++.+|+.+|||+++++|+||+||++.|+++.....+.+++++|+||+++++++.
T Consensus 157 ~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 157 SQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred HHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeE
Confidence 4999999999999999999999999999999999888888899999999999998544
No 67
>KOG0104|consensus
Probab=98.47 E-value=4.2e-07 Score=98.57 Aligned_cols=82 Identities=37% Similarity=0.581 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCcee
Q psy3270 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTF 237 (655)
Q Consensus 158 ~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~ 237 (655)
..+..|+.+...+++++|||||.+|++.+|+++.+|+++||++++.||++-+|+|+.|+..+. . |++++..
T Consensus 145 ~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rR--k-------~i~~~~q 215 (902)
T KOG0104|consen 145 YAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRR--K-------EINETPQ 215 (902)
T ss_pred HHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcc--c-------cCCCCce
Confidence 445678889999999999999999999999999999999999999999999999999998766 1 5788999
Q ss_pred EEEEEEEeCCc
Q psy3270 238 DVSVLAIDEGS 248 (655)
Q Consensus 238 dvsv~~~~~~~ 248 (655)
-+-+|.++.++
T Consensus 216 ~~i~YDMGs~s 226 (902)
T KOG0104|consen 216 HYIFYDMGSGS 226 (902)
T ss_pred EEEEEecCCCc
Confidence 99999887764
No 68
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.42 E-value=1.7e-06 Score=91.27 Aligned_cols=91 Identities=29% Similarity=0.373 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEE
Q psy3270 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 146 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 146 (655)
-+.+..+|+++++.+..........+|+|+|++|+..+|+++.++++.+|++.+.+++||+||+++++.... .+.+.+
T Consensus 78 ~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~l 155 (335)
T PRK13930 78 FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNM 155 (335)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceE
Confidence 355788888888766554455578999999999999999999999999999999999999999999987532 345679
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+|+++++..+
T Consensus 156 VvDiG~gttdvs~ 168 (335)
T PRK13930 156 VVDIGGGTTEVAV 168 (335)
T ss_pred EEEeCCCeEEEEE
Confidence 9999999998754
No 69
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.41 E-value=2.3e-07 Score=105.95 Aligned_cols=88 Identities=52% Similarity=0.753 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEE
Q psy3270 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 146 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 146 (655)
..++..+...+..........-+-. ||++|++.||+++++||++|||+++++|+||+|||+.|++.... .+..++
T Consensus 117 ~~~l~~l~~~a~~~~~~~~~~~vit----VPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vl 191 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGEKVTDVVIT----VPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD-KGKTVL 191 (602)
T ss_dssp HHHHHHHHHHHHHHHTSBEEEEEEE----E-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEE
T ss_pred ccchhhhcccchhhcccccccceee----echhhhhhhhhcccccccccccccceeecccccccccccccccc-ccccee
Confidence 4456666666665555444333334 59999999999999999999999999999999999999887655 678999
Q ss_pred EEeccccchhhHH
Q psy3270 147 IFDLGGGTFDVSM 159 (655)
Q Consensus 147 ~~d~g~~~~~~~l 159 (655)
++|+||++++.++
T Consensus 192 v~D~Gggt~dvs~ 204 (602)
T PF00012_consen 192 VVDFGGGTFDVSV 204 (602)
T ss_dssp EEEEESSEEEEEE
T ss_pred ccccccceEeeee
Confidence 9999999999754
No 70
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.35 E-value=5.7e-05 Score=86.32 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=63.2
Q ss_pred ceEEeecHHHHHHHhh---HHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcc---------
Q psy3270 325 DFYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL--------- 392 (655)
Q Consensus 325 ~~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v--------- 392 (655)
+..+.|+...+...+. -.+..++..+-+++...+ .|-++|+|--||+|.||..+.+..+ .++
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y 803 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGY 803 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCe
Confidence 4556889999988774 566667777777776654 4669999999999999999999873 111
Q ss_pred -----------cCCCCchhHHHhHHHHHHHHHc
Q psy3270 393 -----------NLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 393 -----------~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..--||-..||.||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 1234899999999998875544
No 71
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.29 E-value=3.6e-06 Score=83.87 Aligned_cols=93 Identities=30% Similarity=0.394 Sum_probs=78.8
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhC-CCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLG-GKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~-~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.+.--+++..+|+++++.+....+ .....++++||..-++-+|+|+.+|++.||...+.+++||.|||+++++... .
T Consensus 74 VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~--e 151 (342)
T COG1077 74 VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM--E 151 (342)
T ss_pred EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc--C
Confidence 455566788889998887764444 3455789999999999999999999999999999999999999999998754 3
Q ss_pred CeeEEEEeccccchhh
Q psy3270 142 EKNVLIFDLGGGTFDV 157 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~ 157 (655)
+.+.+++|+|+|+++.
T Consensus 152 p~G~mvvDIGgGTTev 167 (342)
T COG1077 152 PTGSMVVDIGGGTTEV 167 (342)
T ss_pred CCCCEEEEeCCCceeE
Confidence 4589999999999985
No 72
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.12 E-value=4e-05 Score=74.63 Aligned_cols=190 Identities=22% Similarity=0.197 Sum_probs=101.0
Q ss_pred HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHH
Q psy3270 195 SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274 (655)
Q Consensus 195 ~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~ 274 (655)
+..|.++..-=.|+.+|.+....... .+....++|+|||+||.|++.-+ + .+...--. -.|+.++..|...
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~-g-~v~~iHlA----GAG~mVTmlI~sE- 176 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRD-G-EVTAIHLA----GAGNMVTMLINSE- 176 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TT-S--EEEEEEE-----SHHHHHHHHHHH-
T ss_pred HHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCC-C-cEEEEEec----CCchhhHHHHHHh-
Confidence 45577777777899999998876654 56779999999999999999743 3 23222211 2466666555332
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC-----------CCceEEEEcccc-----------CC--cceEEee
Q psy3270 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-----------STEASLEIDALH-----------EG--IDFYSKI 330 (655)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~-----------~~~~~i~i~~~~-----------~~--~~~~~~i 330 (655)
.+.+ . +.-||.+|+-=-. +....+.-+.+. ++ .++...+
T Consensus 177 -------LGl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 177 -------LGLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp -------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred -------hCCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 2221 1 1237777753110 001111000000 00 0111123
Q ss_pred cHHHHHHHhhHHHHhh-hhHHHHHHHHcCCC--CCCcceEEEecCccchHHHHHHHHhhhCCC-------cccCCCCchh
Q psy3270 331 TRARFEELCMDLFRQT-LAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDE 400 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p~~ 400 (655)
+-+++..+=+..=+++ ..-..++|+....+ ..+|+.|+|||||+.=--|-+++.+.+..- .++-.--|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3333333322222222 22344555554322 347899999999998888888888887332 4555668999
Q ss_pred HHHhHHHHHH
Q psy3270 401 AVAYGAAVQA 410 (655)
Q Consensus 401 ava~GAa~~a 410 (655)
|||.|.++.-
T Consensus 320 AVATGLvlsy 329 (332)
T PF08841_consen 320 AVATGLVLSY 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 73
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.06 E-value=9.7e-06 Score=83.62 Aligned_cols=93 Identities=32% Similarity=0.377 Sum_probs=69.7
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.--+++..+|+++.+.+.......-..++|+||...|+.+|+++.+++..+|...+.+++||.|||+++|++. ..+.
T Consensus 68 I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i--~~~~ 145 (326)
T PF06723_consen 68 IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDI--FEPR 145 (326)
T ss_dssp ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--T--TSSS
T ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCC--CCCC
Confidence 44456788888888887755433456789999999999999999999999999999999999999999999985 5678
Q ss_pred eEEEEeccccchhhH
Q psy3270 144 NVLIFDLGGGTFDVS 158 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~ 158 (655)
+.+++|+|+++++..
T Consensus 146 g~miVDIG~GtTdia 160 (326)
T PF06723_consen 146 GSMIVDIGGGTTDIA 160 (326)
T ss_dssp -EEEEEE-SS-EEEE
T ss_pred ceEEEEECCCeEEEE
Confidence 999999999999964
No 74
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.05 E-value=0.00031 Score=70.70 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=50.8
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc-CCCCchhHHHhHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN-LSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~ava~GAa~~a~~ 412 (655)
++.-+...+.+.+...++..++. +.|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|+|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 33444444444444444443322 34999999999999999999999 56665 5778999999999999854
No 75
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.01 E-value=8.4e-06 Score=85.67 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCc--eEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 66 PEEISSMVLTKMREIAEVYLGGKVS--EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 66 ~~ev~a~~l~~l~~~ae~~~~~~i~--~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
.-++++++|++++..|+.+++..+. .+|||+|++|++.||+++.+|++.||++.+.+++||+|||++++++. ..+.
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~--~~~~ 150 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPV--DEPV 150 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCc--CCCc
Confidence 3378999999999999988887664 89999999999999999999999999999999999999999998764 3457
Q ss_pred eEEEEeccccchhhHH
Q psy3270 144 NVLIFDLGGGTFDVSM 159 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~l 159 (655)
+.+++|+|+++++..+
T Consensus 151 ~~lvvDiG~gtt~v~v 166 (335)
T PRK13929 151 ANVVVDIGGGTTEVAI 166 (335)
T ss_pred eEEEEEeCCCeEEEEE
Confidence 8899999999998754
No 76
>KOG0679|consensus
Probab=97.93 E-value=0.00012 Score=74.23 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=73.7
Q ss_pred cceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCce
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 249 (655)
-.-++||-|+.=+...|+.+.+. .+...++...|+.+|+++|++.|. .+.||+|+|++++.++-+. +| .
T Consensus 106 ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr-------stalVvDiGa~~~svsPV~--DG-~ 175 (426)
T KOG0679|consen 106 EHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR-------STALVVDIGATHTSVSPVH--DG-Y 175 (426)
T ss_pred ccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-------CceEEEEecCCCceeeeee--cc-e
Confidence 45689999997778888877765 467788899999999999998753 4569999999999998765 34 2
Q ss_pred EEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3270 250 FQVKSTAGDTHLGGEDFDNRLVTFFADE 277 (655)
Q Consensus 250 ~~v~~~~~~~~lGG~~~d~~l~~~~~~~ 277 (655)
.--.+.. ..++||+.++..+.+.|...
T Consensus 176 Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 176 VLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 2222222 25799999999999888664
No 77
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=97.92 E-value=0.00012 Score=78.88 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=74.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
.-..+++|-|..+....|..+.+. .+...+..+.+..++.++..+.+.. ..+.+|+|+|.+.++++=+-- |
T Consensus 105 ~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~-----~~~g~ViD~G~~~t~v~PV~D--G- 176 (444)
T COG5277 105 EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS-----DETGLVIDSGDSVTHVIPVVD--G- 176 (444)
T ss_pred cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC-----CCceEEEEcCCCceeeEeeec--c-
Confidence 345799999999999988887765 5677888888888888888776643 247899999999999986642 2
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADE 277 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~ 277 (655)
+.+........+||++++..|.+.+...
T Consensus 177 -~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 -IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 1112222235699999999998887663
No 78
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.87 E-value=0.00062 Score=69.59 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCcc----------------------eeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEE
Q psy3270 184 DSQRQATKDAGSIAGLNV----------------------LRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSV 241 (655)
Q Consensus 184 ~~~r~~~~~a~~~AGl~~----------------------~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv 241 (655)
+..+++++++.+.+|... -..++|-+|-+.+...-.+ +.. .|+|+||- |.-+
T Consensus 170 p~~~~~l~~~le~l~~~~~~I~~~~~TGYGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~p---~~d-tIiDIGGQ--D~K~ 243 (396)
T COG1924 170 PIAEKALKEALEELGEKLEEILGLGVTGYGRNLVGAALGADKVVVEISAHAKGARYFAP---DVD-TVIDIGGQ--DSKV 243 (396)
T ss_pred hhHHHHHHHHHHHcccChheeeeeeeecccHHHhhhhhcCCcceeeeehhHHHHHHhCC---CCc-EEEEecCc--ceeE
Confidence 335677777777666531 2234566665444322211 111 89999996 6667
Q ss_pred EEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEcccc
Q psy3270 242 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALH 321 (655)
Q Consensus 242 ~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~ 321 (655)
+++.+| ...-..-..-+.-|.-.|-+.+++.| +.++ ..+-+.+++.+..-.-+..+.+..++-.
T Consensus 244 i~i~dG-~v~df~mN~~CAAGtGrFLE~~A~~L--------gv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSev 307 (396)
T COG1924 244 IKLEDG-KVDDFTMNDKCAAGTGRFLEVIARRL--------GVDV-------EELGKLALKATPPVKINSRCAVFAESEV 307 (396)
T ss_pred EEEeCC-eeeeeEeccccccccchHHHHHHHHh--------CCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHH
Confidence 777777 44433333333334333333333322 2222 2222334444432222233333222100
Q ss_pred CCcceEEeecHHHHHHHhhHHHHhhhhHHHH-HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchh
Q psy3270 322 EGIDFYSKITRARFEELCMDLFRQTLAPVER-ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400 (655)
Q Consensus 322 ~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ 400 (655)
.+..=.-...|+++..+...+.+.+.. +++...... -|+|+||.+....+.+.+++.+ +.++.+|.+|..
T Consensus 308 ----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql 378 (396)
T COG1924 308 ----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQL 378 (396)
T ss_pred ----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccch
Confidence 000000012355666666666555544 555444332 2999999999999999999999 789999999999
Q ss_pred HHHhHHHHHHHH
Q psy3270 401 AVAYGAAVQAAI 412 (655)
Q Consensus 401 ava~GAa~~a~~ 412 (655)
.-|.|||++|..
T Consensus 379 ~GAiGAAL~a~~ 390 (396)
T COG1924 379 MGAIGAALIAKE 390 (396)
T ss_pred hhHHHHHHHHhh
Confidence 999999999854
No 79
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.85 E-value=0.00054 Score=68.04 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=49.3
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc----ccCCCCchhHHHhHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS----LNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~ava~GAa~~a 410 (655)
+++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.+++.+++.. +..+.+|+.+-|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344444445555444445543311 1359999999999999999999985433 4556688999999999864
No 80
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.81 E-value=0.00035 Score=72.31 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=96.1
Q ss_pred eecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeC-CceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhh
Q psy3270 203 RIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDE-GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRK 281 (655)
Q Consensus 203 ~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~ 281 (655)
.+++|.+|-|....... +..-.|+|+||-.+ -++++++ | .+.-......+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~----P~vrTIIDIGGQDs--K~I~ld~~G-~V~dF~MNDKCAAGTGrFLE~mA~~L------- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY----PGTRTVLDIGGQDT--KGIQIDDHG-IVENFQMNDRCAAGCGRYLGYIADEM------- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC----CCCCEEEEeCCCce--EEEEEcCCC-cEeeeeecCcccccchHHHHHHHHHc-------
Confidence 45689998777654432 22337999999754 4566653 5 33222222223334333333333222
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCC
Q psy3270 282 HKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK 361 (655)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~ 361 (655)
+.++ ..|-..+.+.+....-+..+.+..++-.-. -..--+++ ++++.-+...+...+...+...+
T Consensus 315 -gi~l-------eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~--- 379 (432)
T TIGR02259 315 -NMGL-------HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG--- 379 (432)
T ss_pred -CCCH-------HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---
Confidence 2221 112222333333333333343333221000 00112333 33444444555554455554431
Q ss_pred CCcceEEEecCccchHHHHHHHHhhhC----CCcccCCCCchhHHHhHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRIPKIQKMLQDFFN----GKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~ava~GAa~~a 410 (655)
..-+.|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112459999999999999999999994 4567788999999999999875
No 81
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.78 E-value=0.00029 Score=73.72 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=52.1
Q ss_pred HHhhHHHHhhhhHHHH-HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVER-ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
+++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 332 DIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 332 DVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 3444444444444442 34433322 34999999999999999999999 67888899999999999999984
No 82
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.76 E-value=3.3e-05 Score=81.33 Aligned_cols=96 Identities=25% Similarity=0.345 Sum_probs=79.5
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCC
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGE 142 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~ 142 (655)
.+...+++..+|+++++.+..........+|||||++|+..||+++.+|++.||++.+.+++||+||+++|+++. ..+
T Consensus 69 ~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~--~~~ 146 (336)
T PRK13928 69 VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDI--SQP 146 (336)
T ss_pred eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcc--cCC
Confidence 345556788888998866543333345579999999999999999999999999999999999999999999854 345
Q ss_pred eeEEEEeccccchhhHHH
Q psy3270 143 KNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 143 ~~~~~~d~g~~~~~~~l~ 160 (655)
.+.+++|+|+++++..+.
T Consensus 147 ~~~lVvDiGggttdvsvv 164 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVL 164 (336)
T ss_pred CeEEEEEeCCCeEEEEEE
Confidence 678999999999997543
No 83
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.57 E-value=6.4e-05 Score=74.80 Aligned_cols=49 Identities=35% Similarity=0.568 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 104 ~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
||+++.++++.|||++..+++||.|+++.|+.. ..+++|+|+++++..+
T Consensus 76 ~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------~~~vvDiGggtt~i~i 124 (239)
T TIGR02529 76 DPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------NGAVVDVGGGTTGISI 124 (239)
T ss_pred cHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------CcEEEEeCCCcEEEEE
Confidence 789999999999999999999999999988754 2589999999988643
No 84
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=97.49 E-value=0.00016 Score=76.15 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEE
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLI 147 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~ 147 (655)
+.+..+++++........+..-..+|+|+|++|++.+|+++.++++.+|++.+.+++||+||+++|+... ..+...++
T Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lV 154 (333)
T TIGR00904 77 EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPV--EEPTGSMV 154 (333)
T ss_pred HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcc--cCCceEEE
Confidence 3345555665554433223333489999999999999999999999999999999999999999998754 34567899
Q ss_pred EeccccchhhHH
Q psy3270 148 FDLGGGTFDVSM 159 (655)
Q Consensus 148 ~d~g~~~~~~~l 159 (655)
+|+|+++++..+
T Consensus 155 vDiG~gttdvs~ 166 (333)
T TIGR00904 155 VDIGGGTTEVAV 166 (333)
T ss_pred EEcCCCeEEEEE
Confidence 999999998754
No 85
>PRK13317 pantothenate kinase; Provisional
Probab=97.26 E-value=0.0049 Score=62.52 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=42.1
Q ss_pred cceEEEec-CccchHHHHHHHHhhhC--CCcccCCCCchhHHHhHHHHHHH
Q psy3270 364 IHDVVLVG-GSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 364 i~~ViLvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 46799999 79999999999999873 56778888999999999999874
No 86
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.25 E-value=0.0012 Score=70.30 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH------------cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEE
Q psy3270 185 SQRQATKDAGSI------------AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQV 252 (655)
Q Consensus 185 ~~r~~~~~a~~~------------AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v 252 (655)
..++++++|++. ||+++-.++. |.|++.+.... +++..++++|+|||||++++++ +|...
T Consensus 98 ~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~iaVf~--~G~l~-- 169 (475)
T PRK10719 98 ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYALFD--AGKVI-- 169 (475)
T ss_pred hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEEEEE--CCEEE--
Confidence 345666777775 7777777766 99999888743 3788999999999999999997 34122
Q ss_pred EEecCCCCCCcchHHHH
Q psy3270 253 KSTAGDTHLGGEDFDNR 269 (655)
Q Consensus 253 ~~~~~~~~lGG~~~d~~ 269 (655)
..+..++||+.++.+
T Consensus 170 --~T~~l~vGG~~IT~D 184 (475)
T PRK10719 170 --DTACLNVGGRLIETD 184 (475)
T ss_pred --EEEEEecccceEEEC
Confidence 222367999998754
No 87
>PRK11678 putative chaperone; Provisional
Probab=97.22 E-value=0.00027 Score=76.80 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHHH
Q psy3270 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE 161 (655)
Q Consensus 103 ~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~~ 161 (655)
..++.+.+||+.|||+++++++||+|||+.|+.. ...+...+++|+||++++.++..
T Consensus 171 ~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~--~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 171 QAEGILERAAKRAGFKDVEFQFEPVAAGLDFEAT--LTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccc--cCCCCeEEEEEeCCCeEEEEEEE
Confidence 4466788999999999999999999999999874 34567899999999999875543
No 88
>KOG0797|consensus
Probab=97.20 E-value=0.0037 Score=65.90 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=69.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEE
Q psy3270 173 EAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQ 251 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~ 251 (655)
.+|+-||..|.-.+.+.+... ....||....++.|+.||.+..|+. ...|+|+|+-+|.++.++- | + .
T Consensus 229 ~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVEd--G-v-s 297 (618)
T KOG0797|consen 229 HAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVED--G-V-S 297 (618)
T ss_pred eEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEeec--C-c-c
Confidence 568888988887766555554 5778999999999999999887765 3489999999999988763 3 1 1
Q ss_pred EEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 252 VKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 252 v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
+..+.--...||.||++.|+-++.+
T Consensus 298 ~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 298 LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred ccCceEEeccCCchHHHHHHHHHHh
Confidence 1111112468999999999877654
No 89
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00021 Score=66.11 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEe
Q psy3270 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFD 149 (655)
Q Consensus 70 ~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d 149 (655)
+-.+.|++++.+|+.+|.+++.+.-++|+.--+...+...+..+-||++++.+++||+||+.-.+++ ...++|
T Consensus 74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-------dg~VVD 146 (277)
T COG4820 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-------DGGVVD 146 (277)
T ss_pred HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-------CCcEEE
Confidence 3457899999999999999999999999998777888889999999999999999999999877775 346789
Q ss_pred ccccchhh
Q psy3270 150 LGGGTFDV 157 (655)
Q Consensus 150 ~g~~~~~~ 157 (655)
+|||++-.
T Consensus 147 iGGGTTGI 154 (277)
T COG4820 147 IGGGTTGI 154 (277)
T ss_pred eCCCccee
Confidence 99998875
No 90
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=96.89 E-value=0.18 Score=55.27 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=51.1
Q ss_pred EeecHHHHHHHhhHH---HHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcc------------
Q psy3270 328 SKITRARFEELCMDL---FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL------------ 392 (655)
Q Consensus 328 ~~itr~~~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v------------ 392 (655)
+.|.-+++++.+-.- +...+..+-+++.- -+-|-++|+|--||+|+|+..+....+ .++
T Consensus 745 l~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yrvg 818 (1014)
T COG4457 745 LAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYRVG 818 (1014)
T ss_pred eeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEeccceecc
Confidence 455556665544322 22333333333332 335679999999999999999988762 111
Q ss_pred --------cCCCCchhHHHhHHHHHHHHHc
Q psy3270 393 --------NLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 393 --------~~~~~p~~ava~GAa~~a~~l~ 414 (655)
.+--||...+|.||-+++..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 1223899999999988886553
No 91
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.81 E-value=0.0022 Score=61.87 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCC-CCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLD-KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
..++++.+++.+.-.+...++...-. ...++.|+++||.++.|.+.+++.+.| +.++... +..++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 45555556666655555555443111 234789999999999999999999999 6777665 4488999999999864
No 92
>KOG0677|consensus
Probab=96.81 E-value=0.04 Score=53.30 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=112.6
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGS 248 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 248 (655)
....+.+|=|.--....|+.|.+. .+.-|+.-+.+.-...-+..+-++. .=+|+|-|.|.|.+.-+- .+-
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-------tGvVvDSGDGVTHi~PVy--e~~ 170 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-------TGVVVDSGDGVTHIVPVY--EGF 170 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------ceEEEecCCCeeEEeeee--cce
Confidence 345788999998888889988876 4677887776655444444333332 238999999988876443 121
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcC-------------CCCceEE
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLS-------------SSTEASL 315 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls-------------~~~~~~i 315 (655)
.+.-+ .+...+.|+|+++-+.+.+..+- |..+-.. ... ....+|+.|. ..+..-+
T Consensus 171 ~l~HL--trRldvAGRdiTryLi~LLl~rG---YafN~tA---DFE----TVR~iKEKLCYisYd~e~e~kLalETTvLv 238 (389)
T KOG0677|consen 171 VLPHL--TRRLDVAGRDITRYLIKLLLRRG---YAFNHTA---DFE----TVREIKEKLCYISYDLELEQKLALETTVLV 238 (389)
T ss_pred ehhhh--hhhccccchhHHHHHHHHHHhhc---ccccccc---chH----HHHHHHhhheeEeechhhhhHhhhhheeee
Confidence 11111 12345889999999988875431 1111111 111 1223343332 1111111
Q ss_pred EEccccCCcceEEeecHHHHH---HHhhHHH-----HhhhhHHHHHHHHcCCCC--CCcceEEEecCccchHHHHHHHHh
Q psy3270 316 EIDALHEGIDFYSKITRARFE---ELCMDLF-----RQTLAPVERALNDAKLDK--GSIHDVVLVGGSIRIPKIQKMLQD 385 (655)
Q Consensus 316 ~i~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~ 385 (655)
.--.+.+|.- +.+--+.|+ .+++|.+ ..+.+++..+++.+.++. .--.+|+|.||++.-|++-.+|++
T Consensus 239 ~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEk 316 (389)
T KOG0677|consen 239 ESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEK 316 (389)
T ss_pred eeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHH
Confidence 1112334432 244444454 5666643 234566677777766542 234689999999999999888877
Q ss_pred hh
Q psy3270 386 FF 387 (655)
Q Consensus 386 ~f 387 (655)
.+
T Consensus 317 El 318 (389)
T KOG0677|consen 317 EL 318 (389)
T ss_pred HH
Confidence 65
No 93
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.70 E-value=0.0038 Score=55.00 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCC--cchHH--HHHHHHH
Q psy3270 227 VLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLG--GEDFD--NRLVTFF 274 (655)
Q Consensus 227 vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lG--G~~~d--~~l~~~~ 274 (655)
++++|+|++++.+.+++......+.++....-...| |.+++ +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 579999999999999987443356665522111111 77777 6665544
No 94
>KOG0676|consensus
Probab=96.41 E-value=0.021 Score=59.66 Aligned_cols=92 Identities=18% Similarity=0.297 Sum_probs=57.2
Q ss_pred cceEEEEeCCCCCHHHHHHHHHHH-HHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEE-EEEEeCCc
Q psy3270 171 VSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS-VLAIDEGS 248 (655)
Q Consensus 171 ~~~~vitVPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvs-v~~~~~~~ 248 (655)
..-+++|=|..|....|+.+.+.. +.-+.+-+.+ +..|.+ |... -.+-+|+|+|.|-+++. ++. |
T Consensus 99 e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g-----~ttG~VvD~G~gvt~~vPI~e---G- 165 (372)
T KOG0676|consen 99 EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASG-----RTTGLVVDSGDGVTHVVPIYE---G- 165 (372)
T ss_pred cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcC-----CeeEEEEEcCCCceeeeeccc---c-
Confidence 367999999999999998888764 3333333333 222322 3222 23459999999977544 443 2
Q ss_pred eEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3270 249 LFQVKSTAGDTHLGGEDFDNRLVTFFAD 276 (655)
Q Consensus 249 ~~~v~~~~~~~~lGG~~~d~~l~~~~~~ 276 (655)
+.+........+||+++++-+...|.+
T Consensus 166 -~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 166 -YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred -cccchhhheecccchhhHHHHHHHHHh
Confidence 222222334679999999877666655
No 95
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.16 E-value=0.071 Score=57.51 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=105.0
Q ss_pred eEEEEEeCCceeEEEEEEEeC------CceEEEEEecCCCCCCcchHHHHHHHHHHHHHH---------hhccccccccH
Q psy3270 226 NVLIFDLGGGTFDVSVLAIDE------GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK---------RKHKKDILANT 290 (655)
Q Consensus 226 ~vlV~D~GggT~dvsv~~~~~------~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~---------~~~~~~~~~~~ 290 (655)
+-|++=+|-+|+++.+-.... |.....+....-..-||..-.-.+.+||.+... .+++.++. .
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--E 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--H
Confidence 345555777777777654321 111111111222335788888888888877631 11111111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEccccCC------c-------ceEEeecHHHHHHHhhHHHHhhh---hHHHHHH
Q psy3270 291 RAVRRLRTACERAKRTLSSSTEASLEIDALHEG------I-------DFYSKITRARFEELCMDLFRQTL---APVERAL 354 (655)
Q Consensus 291 ~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~------~-------~~~~~itr~~~e~~~~~~~~~i~---~~i~~~l 354 (655)
....++..-+++.+...+.... -+.++.+.++ . .+++.-+.+.+..+....++-+. +.|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2344455555666655532221 1222222211 1 12233445555566555555554 3455555
Q ss_pred HHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 355 NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 355 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++.+ -.|+.|+.+||-.+.|.+.+.+.+.. +.++..+ ..++++++|+|+.|+.-.+
T Consensus 426 ~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 5555 45899999999999999999999998 6666655 6788999999999986554
No 96
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.10 E-value=0.017 Score=64.95 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=65.1
Q ss_pred eecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
.-+|..+..+++.+++-+.-.++..++...-....++.|.++||.++++...+.+.+.| +.++....+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44677778888888888776666665544222234788999999999999999999999 788876644 4578999999
Q ss_pred HHHHHcC
Q psy3270 409 QAAILSG 415 (655)
Q Consensus 409 ~a~~l~~ 415 (655)
.|+.-.|
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9986655
No 97
>PRK15027 xylulokinase; Provisional
Probab=95.99 E-value=0.016 Score=64.30 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=54.7
Q ss_pred HHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
.+++.+++.+.-.+.. .+++.+ ..++.|+++||+++++...+++.+.| +.++....+.+++.++|||+.|+.-
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~ 435 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIA 435 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHh
Confidence 3344444444433333 344433 24788999999999999999999999 7888666667778899999999876
Q ss_pred cC
Q psy3270 414 SG 415 (655)
Q Consensus 414 ~~ 415 (655)
.|
T Consensus 436 ~G 437 (484)
T PRK15027 436 AN 437 (484)
T ss_pred cC
Confidence 65
No 98
>PLN02669 xylulokinase
Probab=95.98 E-value=0.02 Score=64.46 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=54.4
Q ss_pred HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 338 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45566666655555555555432 35788999999999999999999999 6677665444 6889999999975
No 99
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.81 E-value=0.012 Score=59.70 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=79.0
Q ss_pred eChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCe
Q psy3270 64 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143 (655)
Q Consensus 64 ~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~ 143 (655)
+.-.+.+...|+++++.|+.++|.++..++++||.+|+..+|+++.++++.|||++..++++|.|++..++..
T Consensus 63 i~di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------- 135 (267)
T PRK15080 63 VVDFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------- 135 (267)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------
Confidence 3447778889999999999999999999999999999999999999999999999999999999999887553
Q ss_pred eEEEEeccccchhhH
Q psy3270 144 NVLIFDLGGGTFDVS 158 (655)
Q Consensus 144 ~~~~~d~g~~~~~~~ 158 (655)
..+++|+|+++++..
T Consensus 136 ~~~vvDIGggtt~i~ 150 (267)
T PRK15080 136 NGAVVDIGGGTTGIS 150 (267)
T ss_pred CcEEEEeCCCcEEEE
Confidence 258999999999864
No 100
>PRK04123 ribulokinase; Provisional
Probab=95.23 E-value=0.04 Score=62.18 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=53.5
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCc-cchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...-....++.|.++||+ ++++.+.+++.+.| +.++... .+.++.++|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555555444333333322112347889999999 99999999999999 6777554 4567889999999986554
No 101
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.20 E-value=0.095 Score=50.04 Aligned_cols=143 Identities=21% Similarity=0.140 Sum_probs=88.1
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
....++. ++..++++++.||+.+|.+++++++++|+..-.... .-...-++...+-.+....++..+....+..
T Consensus 41 ~I~d~~~-~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~-----~~~~i~i~~~~i~~~di~~~~~~a~~~~~~~ 114 (187)
T smart00842 41 VIVDIEA-AARAIREAVEEAERMAGVKIDSVYVGISGRHLKSVN-----VSGVVAIPDKEITQEDIDRVLEAAKAVALPP 114 (187)
T ss_pred EEECHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcCCceEEEe-----eEEEEECCCCEECHHHHHHHHHHhhccCCCC
Confidence 3455444 489999999999999999999999999998421000 0000111122344445555565555544555
Q ss_pred CeeEEEEeccccchhh-HHHHHHHHHhcC--CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHH
Q psy3270 142 EKNVLIFDLGGGTFDV-SMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 214 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~-~l~~~a~~~~~~--~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~ 214 (655)
+...+-+.+.+..++. .-...+..+.|. ...-.+++.| ....+.+.+|.+.||+++..++.+|.|++.+
T Consensus 115 ~~~il~~~~~~~~~D~~~~v~~P~gm~g~~l~~~~~lv~~~----~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 115 DREILHVLPQEYILDGQEGIKDPIGMSGVRLEVDVHVVTAP----KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred CCEEEEEeeeEEEECCCCCCCCCCCCCccEEEEEEEEEEEe----hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 5555555555554442 111122222222 2344556665 4578889999999999999999999998754
No 102
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.15 E-value=0.055 Score=60.01 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=54.2
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.+...++... .....++.|.++||.++++.+.+++.+.| +.++... ...++.++|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 33444444444444444333321 11124788999999999999999999999 6777665 466688999999998766
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
+
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 5
No 103
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.13 E-value=0.052 Score=60.46 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.+...++... .....++.|.++||.++++...+.+.+.| +.++... ...++.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 34455555555544444443332 11224788999999999999999999999 6787654 455688999999998665
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
|
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 5
No 104
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.09 E-value=0.055 Score=60.37 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=53.7
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCC-CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.+++.+++.+.-.+...++...- ....++.|.++||.++++.+.+.+.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34445555554444444433211 0123788999999999999999999999 77776554 555889999999987655
No 105
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.06 E-value=0.049 Score=60.13 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=54.0
Q ss_pred HHHhhHHHHhhhhHHHH---HHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVER---ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
..+++.+++.+.-.++. .+++.+ ...++.|.++||++++|...+.+.+.| +.++...-+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 34555555554444333 444432 124688999999999999999999999 688866544 46889999999986
Q ss_pred HcC
Q psy3270 413 LSG 415 (655)
Q Consensus 413 l~~ 415 (655)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 655
No 106
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.05 E-value=0.056 Score=60.80 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=52.7
Q ss_pred HhhHHHHhhhhHHH---HHHHHcCCCCCCcceEEEecCc-cchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHH
Q psy3270 338 LCMDLFRQTLAPVE---RALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 338 ~~~~~~~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 413 (655)
+++.+++-+.-.+. +.|+..+ ..++.|+++||. ++.+.+.+.+.+.| +.++.+..++ ++.|+|||+.|+.-
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~ 484 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVA 484 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHH
Confidence 44444444443333 3334333 347889999999 99999999999999 6888666554 68899999999876
Q ss_pred cC
Q psy3270 414 SG 415 (655)
Q Consensus 414 ~~ 415 (655)
.|
T Consensus 485 ~G 486 (536)
T TIGR01234 485 AG 486 (536)
T ss_pred cC
Confidence 65
No 107
>KOG2517|consensus
Probab=95.05 E-value=0.071 Score=57.81 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=60.0
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCC-CCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDK-GSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
+.+....++.+.-.++..|+...... ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+++. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555555555555554443333 46888999999999999999999999 688888888887 9999999999888
Q ss_pred CC
Q psy3270 415 GD 416 (655)
Q Consensus 415 ~~ 416 (655)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 73
No 108
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.04 E-value=0.049 Score=60.61 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
..+++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhc
Confidence 33444445555444444443321 11224788999999999999999999999 7788654 455788999999997665
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
|
T Consensus 449 G 449 (493)
T TIGR01311 449 G 449 (493)
T ss_pred C
Confidence 5
No 109
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.93 E-value=0.33 Score=49.06 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCcceEEEecC-ccchHHHHHHHHhhh--CCCcccCCCCchhHHHhHHHH
Q psy3270 362 GSIHDVVLVGG-SIRIPKIQKMLQDFF--NGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 362 ~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~ava~GAa~ 408 (655)
..+..|+++|| .+..|.+++.+...+ .+.++..+-|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34778999999 678999999998876 235667788999999999986
No 110
>PRK10331 L-fuculokinase; Provisional
Probab=94.88 E-value=0.06 Score=59.54 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHhhHHHHhhhhHHHHHHHHcC-CCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 337 ELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
++.+.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhcC
Confidence 3445555555444444443322 11224788999999999999999999999 77776554 456889999999987555
No 111
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.83 E-value=0.34 Score=53.71 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.++-+..|+++-.|=.|-+|--.+.+...........+|+|+|||+|.+++++ ++......+ .++|.-
T Consensus 92 N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 165 (496)
T PRK11031 92 NADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT--GAQATSLFS----LSMGCV 165 (496)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec--CCceeeeeE----Eeccch
Confidence 45566666677789988666666666555555554443344689999999999999976 331222222 568988
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 166 rl~e~f 171 (496)
T PRK11031 166 TWLERY 171 (496)
T ss_pred HHHHHh
Confidence 777665
No 112
>PLN02295 glycerol kinase
Probab=94.57 E-value=0.082 Score=59.08 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHhhHHHHhhhhHHHHHHHHc----CC--CCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDA----KL--DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQ 409 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 409 (655)
..+++.+++.+.-.++..++.. +. ....++.|.++||+++++...+.+.+.| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 3445555555554444444432 21 1234788999999999999999999999 7788554 4557889999999
Q ss_pred HHHHcC
Q psy3270 410 AAILSG 415 (655)
Q Consensus 410 a~~l~~ 415 (655)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 976655
No 113
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.55 E-value=0.082 Score=59.00 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=53.3
Q ss_pred HHHhhHHHHhhhhHHHHHH----HHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERAL----NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
..+++.+++.+.-.+...+ +..+ ..++.|.++||.++++...+.+.+.| +.++....++ ++.++|||+.|+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~ 447 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGL 447 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHH
Confidence 3445555555544433332 2233 24788999999999999999999999 6888665444 688999999998
Q ss_pred HHcC
Q psy3270 412 ILSG 415 (655)
Q Consensus 412 ~l~~ 415 (655)
.-.|
T Consensus 448 ~~~G 451 (505)
T TIGR01314 448 KALG 451 (505)
T ss_pred HhcC
Confidence 6554
No 114
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.42 E-value=0.099 Score=57.53 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||+++.+...+.+.+.+ +.++... +.++.++|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 6777543 367899999999987655
No 115
>KOG2531|consensus
Probab=94.36 E-value=0.13 Score=54.08 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=47.4
Q ss_pred HHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHH
Q psy3270 354 LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 354 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+..+........|+.|||.|+...|-+.|.+.| +.++..- +-.++.+.|+|+.|+.
T Consensus 433 ~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 433 AEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred hccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 3445666667899999999999999999999999 6666544 7788999999999864
No 116
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.18 E-value=0.11 Score=58.24 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=53.0
Q ss_pred HHHhhHHHHhhhhHHHH---HHHH-cCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVER---ALND-AKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~---~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
..+++.+++.+.-.+.. .+++ .+. .++.|.++||+++++...+.+.+.| +.++....++ ++.++|||+.|+
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~ 455 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAG 455 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHH
Confidence 33444445555433333 3333 232 4788999999999999999999999 7888766544 578999999998
Q ss_pred HHcC
Q psy3270 412 ILSG 415 (655)
Q Consensus 412 ~l~~ 415 (655)
.-.|
T Consensus 456 ~~~G 459 (520)
T PRK10939 456 VGAG 459 (520)
T ss_pred HHhC
Confidence 6655
No 117
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.12 E-value=0.12 Score=57.21 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=42.3
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|.++||+++++...+.+.+.+ +.++... +.++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 6777543 247899999999987655
No 118
>KOG0680|consensus
Probab=93.88 E-value=0.5 Score=47.56 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=52.4
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCcceeecChHHHHHHHccc----ccc---cCCCceEEEEEeCCceeEEEE
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGL----DKN---LKGEKNVLIFDLGGGTFDVSV 241 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~Aaal~~~~----~~~---~~~~~~vlV~D~GggT~dvsv 241 (655)
.-..+++|=|..--+.-.+.+.+. -+.-+++-+. -.+||.+.... ... -..+...+|+|-|.+-|.+.-
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~---kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip 168 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL---KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP 168 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccceEe---ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh
Confidence 345678887776544433333332 3444554322 23344443322 111 013458999999999777664
Q ss_pred EEEeCCceEEEEEecCCCCCCcchHHHHHHHHH
Q psy3270 242 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274 (655)
Q Consensus 242 ~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~ 274 (655)
+-......-.|+ ...+||..+++.|.+.+
T Consensus 169 ~v~g~~~~qaV~----RiDvGGK~LTn~LKE~i 197 (400)
T KOG0680|consen 169 VVKGIPYYQAVK----RIDVGGKALTNLLKETI 197 (400)
T ss_pred hhcCcchhhceE----EeecchHHHHHHHHHHh
Confidence 432211011122 25699999999987765
No 119
>PLN02666 5-oxoprolinase
Probab=93.67 E-value=10 Score=46.70 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=49.3
Q ss_pred ecHHHHHHHhhHHH-HhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 330 ITRARFEELCMDLF-RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 330 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
++-++...-+..+. +...+.|+......+.++.+ -.++..||++ |...-.|.+.++-..+..+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444444433 34455666666666766654 2344455554 66778888888545588888999999999886
Q ss_pred HH
Q psy3270 409 QA 410 (655)
Q Consensus 409 ~a 410 (655)
--
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 120
>KOG0681|consensus
Probab=92.84 E-value=0.096 Score=56.03 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred hhHHHHHHHHcCCCCC--CcceEEEecCccchHHHHHHHHhhhCC-------CcccCCCCchhHHHhHHHHHHHH
Q psy3270 347 LAPVERALNDAKLDKG--SIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 347 ~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f~~-------~~v~~~~~p~~ava~GAa~~a~~ 412 (655)
.+.+..+|+....... .+.+|+|+||+|.+|++.++|...+.. ..|....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 3445555555432222 278999999999999999999988732 24556679999999999999875
No 121
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.41 E-value=0.56 Score=52.27 Aligned_cols=80 Identities=28% Similarity=0.292 Sum_probs=47.6
Q ss_pred cHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHH
Q psy3270 331 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 331 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 410 (655)
+|.+|-..+-.-+--.+....+.|.+.. ...++.|.++||+++.+...+++.+.| +.++..+...+.+.+.||++.+
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~ 447 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAA 447 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHH
Confidence 5544443333222222333334444441 234568999999999999999999999 6777755444444444444444
Q ss_pred HHH
Q psy3270 411 AIL 413 (655)
Q Consensus 411 ~~l 413 (655)
...
T Consensus 448 ~~~ 450 (502)
T COG1070 448 AAL 450 (502)
T ss_pred HHh
Confidence 433
No 122
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.33 E-value=1.5 Score=48.21 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 186 ~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
.-+.+..+-+..|+++-.|=-|-+|--.+.|.-..+......+|+|+|||+|.+++..
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEec
Confidence 4456677777889888777777777666666655544467899999999999999986
No 123
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.15 E-value=3.5 Score=42.67 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=38.8
Q ss_pred CCcceEEEecCccchHHHHHHHHhhhCCC---cccCCCCc----hhHHHhHHHHHHHHHcCC
Q psy3270 362 GSIHDVVLVGGSIRIPKIQKMLQDFFNGK---SLNLSINP----DEAVAYGAAVQAAILSGD 416 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~ava~GAa~~a~~l~~~ 416 (655)
.+++.|+|.|-.+++|-+.+.+++.|... ++ ..+.+ -...|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 45788999999999999988888777321 11 11222 245899999999877763
No 124
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.45 E-value=0.82 Score=46.85 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.+.-+..|+++-.|=.|-+|.-.+.+...........+|+|+|||+|.+++++ ++......+ .++|.-
T Consensus 72 N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~~~S----l~lG~v 145 (285)
T PF02541_consen 72 NSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE--NGKVVFSQS----LPLGAV 145 (285)
T ss_dssp THHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE--TTEEEEEEE----ES--HH
T ss_pred CHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE--CCeeeEeee----eehHHH
Confidence 33444555556679887555555555443334333333467799999999999999986 332223233 568888
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 125
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.17 E-value=0.95 Score=45.94 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred HHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhh----CCCcccCCCCchhHHHhHHHHHH
Q psy3270 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF----NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 337 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f----~~~~v~~~~~p~~ava~GAa~~a 410 (655)
++++...+.+.+.+...++........ |+|+||..+.+.+++.+.+.+ +..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344445555566666666665543322 999999999977777664444 33445567789999999999986
No 126
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.95 E-value=3.1 Score=47.65 Aligned_cols=45 Identities=29% Similarity=0.500 Sum_probs=32.1
Q ss_pred CCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 198 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 198 Gl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
+.++..+.+-|.|..+....-.....+ +++++||||.|||++++.
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 335566788888876665443121223 699999999999999987
No 127
>PRK10854 exopolyphosphatase; Provisional
Probab=88.95 E-value=1.4 Score=49.21 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcc
Q psy3270 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264 (655)
Q Consensus 185 ~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~ 264 (655)
+....+.++-+..|+++-.|=.+-+|--.+.+...........+|+|+|||+|.+++++- +......+ .++|.-
T Consensus 97 N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~--~~~~~~~S----~~lG~v 170 (513)
T PRK10854 97 NATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEN--FEPILVES----RRMGCV 170 (513)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecC--CCeeEeEE----Eeccee
Confidence 444555566667799875555555555444455544333456899999999999999863 21222222 257777
Q ss_pred hHHHHH
Q psy3270 265 DFDNRL 270 (655)
Q Consensus 265 ~~d~~l 270 (655)
.+.+.+
T Consensus 171 rl~e~f 176 (513)
T PRK10854 171 SFAQLY 176 (513)
T ss_pred eHHhhh
Confidence 776654
No 128
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=88.11 E-value=1.8 Score=47.10 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHHH
Q psy3270 107 ATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMR 160 (655)
Q Consensus 107 ~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l~ 160 (655)
.+..+++.|||++..++.+|.|++..+... ...+.+.+.+|+|+++++..+.
T Consensus 170 ~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~--~e~~~gv~vvDiGggtTdisv~ 221 (420)
T PRK09472 170 NIVKAVERCGLKVDQLIFAGLASSYAVLTE--DERELGVCVVDIGGGTMDIAVY 221 (420)
T ss_pred HHHHHHHHcCCeEeeEEehhhHHHHHhcCh--hhhhcCeEEEEeCCCceEEEEE
Confidence 346789999999999999999999987544 2346789999999999997543
No 129
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=87.93 E-value=20 Score=35.94 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCCcceEEEecCccchHHHHHHHHhhhCC-Ccc--cCCCCchhHHHhHHHH
Q psy3270 360 DKGSIHDVVLVGGSIRIPKIQKMLQDFFNG-KSL--NLSINPDEAVAYGAAV 408 (655)
Q Consensus 360 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~v--~~~~~p~~ava~GAa~ 408 (655)
-+..+|.|+|+||.++...+-++|.+...- .++ .-.-+-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 356799999999999999999999887621 122 2223555788888864
No 130
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=87.63 E-value=1.6 Score=46.69 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCC-CcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHc
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKG-SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 414 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~-~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 414 (655)
+.+++..++.+.-...++++...-... .+..+-+=||.|+..++.+...+.+ +.++.++ .-.|+.|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp-~~~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERP-VVLETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecc-ccchhhHHHHHHHHhhhh
Confidence 455666666666665555554332222 5788889999999999999999999 6777766 445688999999998766
Q ss_pred C
Q psy3270 415 G 415 (655)
Q Consensus 415 ~ 415 (655)
+
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
No 131
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=87.00 E-value=0.52 Score=48.38 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=9.7
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccCCCCchhHHHhHHHH
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 408 (655)
..+++.+.|++.....+..+.+ -.++.+||.+ |.+...+.+.++-..+..+..|.-+.|.||++
T Consensus 220 ~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 220 ANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3444455555554444554433 2355566666 66777888877444555555678899999885
No 132
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=86.82 E-value=17 Score=36.86 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=92.1
Q ss_pred cChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEE-ecC-CCCCCcchHHHHHHHHHHHHHHhhc
Q psy3270 205 INEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS-TAG-DTHLGGEDFDNRLVTFFADEFKRKH 282 (655)
Q Consensus 205 i~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~-~~~-~~~lGG~~~d~~l~~~~~~~~~~~~ 282 (655)
+..|+=..++|..... ..-.+++|.|+-..|..+.|- +|..+.=.. +.| -..++ -.+|-.+...+-.
T Consensus 129 ~aSpEKi~iay~a~~~-~~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG~lh-GpLDlE~ir~Id~------ 197 (326)
T TIGR03281 129 IASPEKVSIAYNAYCL-TGFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPGVLH-GPLDLEAIRNIDA------ 197 (326)
T ss_pred cCCHHHHHHHHHHHHH-cCCCCEEEEecCCCeEEEEEE---CCEEEccccccccCccccc-CcccHHHHHhccc------
Confidence 4567777777765443 123689999999999988874 342211111 111 11122 3455544433311
Q ss_pred cccccccHHHHHHHHHHHH-HHHHhcCCCCceEEEEccccCCcceEEeecHHHHHHHhhH------HHHhhhhHHHHHHH
Q psy3270 283 KKDILANTRAVRRLRTACE-RAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMD------LFRQTLAPVERALN 355 (655)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~e-~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~------~~~~i~~~i~~~l~ 355 (655)
.+ .+-..||...-..+. ..+.+ ...+++||.+.+.. -++.+...+...+.
T Consensus 198 -----------------g~~tan~aFs~aGa~kIa--~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIa 254 (326)
T TIGR03281 198 -----------------GKKTANEAFSHAGAVKIA--CADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAMEIA 254 (326)
T ss_pred -----------------CcccHHHHHhhcCeeEEe--ccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 00 111223322222211 11111 14567777665422 22333332222222
Q ss_pred HcCCCCCCcceEEEecC--ccchH-HHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 356 DAKLDKGSIHDVVLVGG--SIRIP-KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 356 ~~~~~~~~i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
...........|+|.|- +++.| .+++.|++.| ..++.. +.. .+.|.|+|+.|--+.+
T Consensus 255 sLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 255 SLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred hheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhC
Confidence 22211122347999987 99999 9999999999 444433 233 7889999999977665
No 133
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=86.56 E-value=2.5 Score=44.66 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCcccC----CCCchhHHHhHHHHHHH
Q psy3270 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL----SINPDEAVAYGAAVQAA 411 (655)
Q Consensus 336 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a~ 411 (655)
++++.-+.+-+...|.+.++.... .++.|+++||+++.|.+.+.|++.+++..+.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 444555555555666666666542 27889999999999999999999997644432 34555444555567775
Q ss_pred H
Q psy3270 412 I 412 (655)
Q Consensus 412 ~ 412 (655)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 134
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=86.50 E-value=48 Score=35.15 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=57.0
Q ss_pred eecHHHHHHHhhHHHHhhh-hHHHHHHHHcCCCCCCcce-EEEecCccchHHHHHHHHhhhCCCcccCCC-CchhHHHhH
Q psy3270 329 KITRARFEELCMDLFRQTL-APVERALNDAKLDKGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-NPDEAVAYG 405 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~-~p~~ava~G 405 (655)
.-.+.++...++..+++++ ..++..++..+ ++. ++|.||....-..-..|.+..+-..+.+++ --|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4577788888888887765 45666666665 455 999999999988888888875334555444 448999999
Q ss_pred HHHHHHHHcC
Q psy3270 406 AAVQAAILSG 415 (655)
Q Consensus 406 Aa~~a~~l~~ 415 (655)
||+++....+
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986554
No 135
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=85.05 E-value=50 Score=34.10 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=29.9
Q ss_pred HcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEE
Q psy3270 196 IAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242 (655)
Q Consensus 196 ~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 242 (655)
..|++ +.+.|+..|+|++-.........++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 33664 67899999999875433222245678889999875 55554
No 136
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=84.69 E-value=9.7 Score=39.26 Aligned_cols=71 Identities=25% Similarity=0.366 Sum_probs=41.5
Q ss_pred HHHHHcCCcceeecChHHHHHHHc-ccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHH
Q psy3270 192 DAGSIAGLNVLRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRL 270 (655)
Q Consensus 192 ~a~~~AGl~~~~li~Ep~Aaal~~-~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l 270 (655)
..-+..|+++- +++..+=|.+.| +........ ..+++|+|||+|.++++. ++......+ .++|.-.+.+.+
T Consensus 93 ~i~~~tgi~i~-visg~eEa~l~~~gv~~~~~~~-~~~v~DiGGGSte~~~~~--~~~~~~~~S----l~lG~vrl~e~f 164 (300)
T TIGR03706 93 EAEAILGLPIE-VISGEEEARLIYLGVAHTLPIA-DGLVVDIGGGSTELILGK--DFEPGEGVS----LPLGCVRLTEQF 164 (300)
T ss_pred HHHHHHCCCeE-EeChHHHHHHHHHHHHhCCCCC-CcEEEEecCCeEEEEEec--CCCEeEEEE----EccceEEhHHhh
Confidence 33445688764 555555555544 333222222 349999999999999875 232222222 567777776654
No 137
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=14 Score=38.62 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCCcceEEEecCccchHHHHHHHHhhhCCCccc----CCCCchhHHHhHHHHHHHHH
Q psy3270 359 LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAIL 413 (655)
Q Consensus 359 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~l 413 (655)
.-....+..+++||+.+.|.+.+.|...+++..|. ..+++|..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34556788999999999999999999999764443 25678877778888888654
No 138
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=83.78 E-value=3.7 Score=43.76 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=64.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCC
Q psy3270 65 APEEISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKG 141 (655)
Q Consensus 65 ~~~ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~ 141 (655)
.--+....+++++... .++. .-..++++.|...+..+|+.+.+.+ +..|.+.+.+++++.++++++|
T Consensus 72 ~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------- 141 (373)
T smart00268 72 ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG------- 141 (373)
T ss_pred eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------
Confidence 3455666777777653 2333 2357899999999999999999987 5789999999999999999886
Q ss_pred CeeEEEEeccccchhh
Q psy3270 142 EKNVLIFDLGGGTFDV 157 (655)
Q Consensus 142 ~~~~~~~d~g~~~~~~ 157 (655)
....+++|+|++.+..
T Consensus 142 ~~~~lVVDiG~~~t~v 157 (373)
T smart00268 142 RTTGLVIDSGDGVTHV 157 (373)
T ss_pred CCEEEEEecCCCcceE
Confidence 4567788888777664
No 139
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=83.50 E-value=3.7 Score=43.75 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHh-hhhcCCceeeeccchhHHHHhhccccccCCCee
Q psy3270 68 EISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKN 144 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a-~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 144 (655)
+....+++++... .+.. .-..+++++|..++..+|+.+.+. .+..|...+.+++++.++++++|. ..
T Consensus 75 ~~~e~~~~~~~~~---~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~ 144 (371)
T cd00012 75 DDMEKIWDHLFFN---ELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TT 144 (371)
T ss_pred HHHHHHHHHHHHH---hcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------Ce
Confidence 3445666666543 2222 346789999999998888888775 777999999999999999998865 56
Q ss_pred EEEEeccccchhh
Q psy3270 145 VLIFDLGGGTFDV 157 (655)
Q Consensus 145 ~~~~d~g~~~~~~ 157 (655)
.+++|+|++.+..
T Consensus 145 ~lVVDiG~~~t~i 157 (371)
T cd00012 145 GLVVDSGDGVTHV 157 (371)
T ss_pred EEEEECCCCeeEE
Confidence 7777877776664
No 140
>PRK14878 UGMP family protein; Provisional
Probab=82.89 E-value=33 Score=35.76 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.1
Q ss_pred cceEEEecCccchHHHHHHHHhhh
Q psy3270 364 IHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 364 i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
+..|+|+||-+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 567999999999999999999976
No 141
>PRK09604 UGMP family protein; Validated
Probab=82.26 E-value=69 Score=33.54 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=37.6
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCC--CcccCCC---CchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNG--KSLNLSI---NPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~--~~v~~~~---~p~~ava~GAa~~a~~l~~ 415 (655)
.++.|+|.||.+...++++.|.+.+.. ..+..+. --|.++++|+|=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 467799999999999999999998732 2333332 3478899998854443333
No 142
>PLN02920 pantothenate kinase 1
Probab=80.90 E-value=26 Score=37.09 Aligned_cols=49 Identities=12% Similarity=-0.062 Sum_probs=36.8
Q ss_pred CCcceEEEecCccchH-HHHHHHHhhh-----CCCcccCCCCchhHHHhHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRIP-KIQKMLQDFF-----NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~p-~v~~~l~~~f-----~~~~v~~~~~p~~ava~GAa~~a 410 (655)
..++.|+++|++.|.+ ..++.|.-.+ ++.+....-+....-|+||++..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4588899999999998 6676454332 34556666788899999998765
No 143
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=80.02 E-value=9 Score=40.45 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=45.7
Q ss_pred hhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCccc----CCCCchhHHHhHHHHHHHH
Q psy3270 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAI 412 (655)
Q Consensus 339 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~ 412 (655)
+.-+.+-+...|.+.++... ...+.|+++||+++.|.+.++|++.++ .++. ...+|+.-=|..-|++|..
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33344444555566665433 224679999999999999999999995 3332 2246665556666777754
No 144
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=79.64 E-value=2.2 Score=45.55 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhcCCceeeeccchhHHHHhhccccccCCCeeEEEEeccccchhhHH
Q psy3270 102 DSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159 (655)
Q Consensus 102 ~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~~l 159 (655)
....+.+.++++.|||++..++.+|.|++..+... ...+.+.+.+|+|+++++..+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~--~~~~~~~~vvDiG~gtt~i~i 212 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE--DEKELGVCLIDIGGGTTDIAV 212 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc--chhcCCEEEEEeCCCcEEEEE
Confidence 34566788899999999999999999999987543 234568899999999998744
No 145
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=77.41 E-value=5.1 Score=43.30 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDF 266 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~ 266 (655)
....++=+|+||||+.+++++. | +++.+.. .++||+-|
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~--G---~v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDN--G---EVIDTAC-LDIGGRLI 178 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEEC--C---EEEEEEE-EeeccEEE
Confidence 4667888999999999999973 4 3344332 57899876
No 146
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=77.00 E-value=24 Score=36.94 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=29.7
Q ss_pred HhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhC
Q psy3270 344 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 344 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 388 (655)
+.+.+.+.++++.. .++.++++||-+...++|+.+++...
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 33444455555543 36779999999999999999999873
No 147
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=76.13 E-value=40 Score=35.38 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCcceEEEecCccch-HHHHHHHH---hhh--CCCcccCCCCchhHHHhHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRI-PKIQKMLQ---DFF--NGKSLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~-p~v~~~l~---~~f--~~~~v~~~~~p~~ava~GAa~~a 410 (655)
..++.|+++|++-+. |...+.+. .++ +..++...-+...+-|.||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 347889999999875 77788887 555 33455566789999999998753
No 148
>PRK07058 acetate kinase; Provisional
Probab=75.78 E-value=18 Score=38.44 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
+..++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 301 f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 301 FALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 4445555544444333 3589999999999 99999999998873
No 149
>PRK03011 butyrate kinase; Provisional
Probab=73.28 E-value=6.8 Score=41.40 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.2
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCC---CcccCCCCchhHHHhHHHH
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNG---KSLNLSINPDEAVAYGAAV 408 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~---~~v~~~~~p~~ava~GAa~ 408 (655)
++|.|+|.||.+..+.+++.|++.+.. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 589999999999999999999888732 2333344556899999874
No 150
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.95 E-value=13 Score=36.64 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=49.9
Q ss_pred eEEEEEeCCceeEEEEEEEeCCc-eEEE---------------------EEecCCCCCCcchHHHHHHHHHHHHHHhhcc
Q psy3270 226 NVLIFDLGGGTFDVSVLAIDEGS-LFQV---------------------KSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283 (655)
Q Consensus 226 ~vlV~D~GggT~dvsv~~~~~~~-~~~v---------------------~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~ 283 (655)
.+|++|+|.||.|+-.+.-+... ..-| +.- .+...||--.++++..|+ +.|
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l-~G~~MGGGp~travrrhl------k~G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLAL-IGVPMGGGPTTRAVRRHL------KKG 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEE-EeeecCCChhhHHHHHHH------hcC
Confidence 47999999999999887532110 1101 111 125689999999999998 345
Q ss_pred ccccccHHHHHHHHHHHHHHHHh
Q psy3270 284 KDILANTRAVRRLRTACERAKRT 306 (655)
Q Consensus 284 ~~~~~~~~~~~~l~~~~e~~K~~ 306 (655)
..+.....+...+.+..|+++..
T Consensus 75 ~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHhh
Confidence 55556667777788888887753
No 151
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=65 Score=33.49 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=36.9
Q ss_pred cHHHHHHHhhHH----HHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhh
Q psy3270 331 TRARFEELCMDL----FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 331 tr~~~e~~~~~~----~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
..++.+++|..+ ++-+++..+++++..+ .+.++++||-+....+|+++++..
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 344455555543 4455555666676655 456999999999999999999876
No 152
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=68.23 E-value=14 Score=42.93 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=37.4
Q ss_pred CcceEEEecCccchHHHHHHHHhhhC--CCcccCC---CCchhHHHhHHHHHHH
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLS---INPDEAVAYGAAVQAA 411 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~---~~p~~ava~GAa~~a~ 411 (655)
.++.|+|+||..+...+++.+.+.+. +.++..+ .--|.+++.|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 36779999999999999999998873 2333332 2347899999988763
No 153
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=67.71 E-value=63 Score=34.66 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=31.6
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
++.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 305 f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 305 FVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 4444444444444332 13599999999999 99999999998873
No 154
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=66.84 E-value=61 Score=32.23 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=54.2
Q ss_pred cCCcceEEE--EeCCCCCHHHHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEe
Q psy3270 168 GGKVSEAVI--TVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAID 245 (655)
Q Consensus 168 ~~~~~~~vi--tVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 245 (655)
|..+..++. .+|.+|+- -+++++.+..+|.+. .+.+--.||.+....+........++++|+|-|+|-..+++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~-- 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK-- 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--
Confidence 566778888 88888542 345555666666665 55555556666665554444567899999999988887773
Q ss_pred CCceEEEEEe
Q psy3270 246 EGSLFQVKST 255 (655)
Q Consensus 246 ~~~~~~v~~~ 255 (655)
++.+.-+..+
T Consensus 186 ~~rI~GvfEH 195 (254)
T PF08735_consen 186 DGRIYGVFEH 195 (254)
T ss_pred CCEEEEEEec
Confidence 4434444443
No 155
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.35 E-value=16 Score=27.40 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCcee
Q psy3270 81 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVL 120 (655)
Q Consensus 81 ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~ 120 (655)
.+++.... ...++.|+.++..+|..+-+.|...||...
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 44555444 677899999999999999999999999764
No 156
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=64.90 E-value=17 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCcee
Q psy3270 77 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVL 120 (655)
Q Consensus 77 l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~ 120 (655)
+.+..+++.... ....++.|+.++..+|..+-+.|+..||...
T Consensus 4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 344455555443 4667899999999999999999999999764
No 157
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=64.58 E-value=36 Score=36.68 Aligned_cols=89 Identities=28% Similarity=0.336 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCC----------------------------CHHHHHHHHHhhhhcCCc
Q psy3270 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYF----------------------------NDSQRQATKDAGSIAGLN 118 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f----------------------------~~~~r~~~~~a~~~agl~ 118 (655)
.|+...-+.++.+.|......+-..++=..|-.| ...--+-+..+.+.+||+
T Consensus 101 ~eIt~~DI~rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~ 180 (418)
T COG0849 101 KEITQEDIERVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSGVRLEVEVHVITGPKNILENLEKCVERAGLK 180 (418)
T ss_pred CccCHHHHHHHHHHHHhhccCCCceEEEEeeeEEEECCccccCCccccccceEEEEEEEEEcchHHHHHHHHHHHHhCCC
Confidence 5555555667777776665544455544555444 233356678889999999
Q ss_pred eeeeccchhHHHHhhccccccCCCeeEEEEeccccchhh
Q psy3270 119 VLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDV 157 (655)
Q Consensus 119 ~~~~i~e~~Aaa~~~~~~~~~~~~~~~~~~d~g~~~~~~ 157 (655)
+..++-+|.|++.....+ -+.+.+...+|+|+|+++.
T Consensus 181 v~~i~l~plAsa~a~L~~--dEkelGv~lIDiG~GTTdI 217 (418)
T COG0849 181 VDNIVLEPLASALAVLTE--DEKELGVALIDIGGGTTDI 217 (418)
T ss_pred eeeEEEehhhhhhhccCc--ccHhcCeEEEEeCCCcEEE
Confidence 999999999999766443 3566899999999999986
No 158
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=1.4e+02 Score=33.02 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=55.8
Q ss_pred eecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHH-HHHHhhhCCCcccCCC-CchhHHHhHH
Q psy3270 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQ-KMLQDFFNGKSLNLSI-NPDEAVAYGA 406 (655)
Q Consensus 329 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~f~~~~v~~~~-~p~~ava~GA 406 (655)
+..-.++...++..+++++..+..-+.+... .+.+.+.||....-..- +.+.+.+ ...+.+.+ -.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 3444566677777787777766666665421 46799999998776666 6666655 34454433 4478899999
Q ss_pred HHHHHHHcC
Q psy3270 407 AVQAAILSG 415 (655)
Q Consensus 407 a~~a~~l~~ 415 (655)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999976544
No 159
>PRK00976 hypothetical protein; Provisional
Probab=63.54 E-value=26 Score=36.30 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=38.3
Q ss_pred CcceEEEecCccchH--HHHHHHHhhhCCCcccCCCCchhHHHhHHHHHHHHHcC
Q psy3270 363 SIHDVVLVGGSIRIP--KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 415 (655)
+++.|+|-||-|+.+ .+.+.+++.+. .. ...-...+-++|||+.|..+.+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHhC
Confidence 467899999999998 78899988883 22 2233458999999999976644
No 160
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=61.98 E-value=25 Score=26.47 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
.+..+++...+ ...++.|+.++..+|..+.+.|...||..
T Consensus 5 ~~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 5 NKALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 34455666655 77899999999999999999999999864
No 161
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=61.06 E-value=2e+02 Score=29.95 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=30.4
Q ss_pred cceEEEecCccchHHHHHHHHhhhC--CCcccCCC---CchhHHHhH
Q psy3270 364 IHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSI---NPDEAVAYG 405 (655)
Q Consensus 364 i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~G 405 (655)
+..|+|.||.+...++++.|.+.+. +.++..+. --|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 5679999999999999999999652 22333322 236777777
No 162
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=60.23 E-value=1.5e+02 Score=31.93 Aligned_cols=44 Identities=9% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
+..++.+.|-......+ ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 309 f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 309 YVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444444444433322 2489999999999 99999999998874
No 163
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=58.80 E-value=33 Score=33.18 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=34.5
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCC---CCcchHHHHHHHHHHHHHH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTH---LGGEDFDNRLVTFFADEFK 279 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~---lGG~~~d~~l~~~~~~~~~ 279 (655)
+...+|++|+||.++-+.++++.++..+.+.......+ .-|.. ..|.+|+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i~ 118 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCIA 118 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHHH
Confidence 44679999999999999999998775554433222111 11221 556677655443
No 164
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=58.70 E-value=22 Score=37.03 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=54.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhh---------cCCceeeeccchhHHHHhhcccc--ccCCCeeEEEEeccccchh
Q psy3270 88 KVSEAVITVPAYFNDSQRQATKDAGSI---------AGLNVLRIINEPTAAALAYGLDK--NLKGEKNVLIFDLGGGTFD 156 (655)
Q Consensus 88 ~i~~~vitvP~~f~~~~r~~~~~a~~~---------agl~~~~~i~e~~Aaa~~~~~~~--~~~~~~~~~~~d~g~~~~~ 156 (655)
.+..+|++.|..+...++..+.+...- .-+..+.++++|.+|.+.+..+. ........+++|+|+++++
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 466799999999888888888887442 23456889999999987775432 1224556799999999999
Q ss_pred hHHH
Q psy3270 157 VSMR 160 (655)
Q Consensus 157 ~~l~ 160 (655)
..+.
T Consensus 181 ~~~~ 184 (320)
T TIGR03739 181 WLVA 184 (320)
T ss_pred eehc
Confidence 7543
No 165
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=57.87 E-value=7.7 Score=40.14 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.6
Q ss_pred CceEEEEEeCCceeEEEEEE
Q psy3270 224 EKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~ 243 (655)
-.+++++||||.|||++++.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 34599999999999999986
No 166
>PRK09557 fructokinase; Reviewed
Probab=54.76 E-value=2.5e+02 Score=28.64 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=25.2
Q ss_pred cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCc
Q psy3270 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGG 235 (655)
Q Consensus 197 AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~Ggg 235 (655)
-|++ +.+.|+..|+|++-.........++++.+.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 3674 6789999999988643322223466777888755
No 167
>PRK12440 acetate kinase; Reviewed
Probab=54.10 E-value=1.9e+02 Score=30.90 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHH-HHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK-IQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~-v~~~l~~~f~ 388 (655)
++.++.+.|-......+ .+|.|+++||-+.... +|+.+.+.+.
T Consensus 303 f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 303 FTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44455555544444332 5899999999998877 9999998873
No 168
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=51.78 E-value=37 Score=36.35 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=54.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhh-hhcCCceeeeccchhHHHHhhccccccCCCee
Q psy3270 66 PEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG-SIAGLNVLRIINEPTAAALAYGLDKNLKGEKN 144 (655)
Q Consensus 66 ~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~-~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 144 (655)
--+....+++++.... -.....-..++++.|..++...|+.+.+.. +..+++.+.+++++.++...+|.. .
T Consensus 72 ~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------t 143 (393)
T PF00022_consen 72 DWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------T 143 (393)
T ss_dssp SHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------S
T ss_pred cccccccccccccccc-cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------c
Confidence 3445566677766532 112224557899999999999999888874 588999999999999999888664 3
Q ss_pred EEEEeccccchh
Q psy3270 145 VLIFDLGGGTFD 156 (655)
Q Consensus 145 ~~~~d~g~~~~~ 156 (655)
.+++|+|...+.
T Consensus 144 glVVD~G~~~t~ 155 (393)
T PF00022_consen 144 GLVVDIGYSSTS 155 (393)
T ss_dssp EEEEEESSS-EE
T ss_pred ccccccceeeee
Confidence 455565555443
No 169
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=48.80 E-value=46 Score=34.57 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=37.8
Q ss_pred hhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCC--CcccCCC---CchhHHHhHHH
Q psy3270 347 LAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG--KSLNLSI---NPDEAVAYGAA 407 (655)
Q Consensus 347 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--~~v~~~~---~p~~ava~GAa 407 (655)
.+.+..+++.. .++.|+|.||.+...++++.|.+.+.. .++..+. --|.++++|+|
T Consensus 248 ~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 248 VEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 34444444433 367799999999999999999988722 2333222 34778888876
No 170
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=48.77 E-value=43 Score=37.68 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=38.1
Q ss_pred cceEEEecCccchHHHHHHHHhhhC--CCcccCCC---CchhHHHhHHHHHHHHHcC
Q psy3270 364 IHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSI---NPDEAVAYGAAVQAAILSG 415 (655)
Q Consensus 364 i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~~a~~l~~ 415 (655)
++.|+|+||-....++++.|.+.+. +.++..+. ..|.+++.|++.+....++
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 5679999999999999999997652 23343332 4578999998876655544
No 171
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=47.57 E-value=32 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=26.7
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhcCCcee
Q psy3270 91 EAVITVPAYFNDSQRQATKDAGSIAGLNVL 120 (655)
Q Consensus 91 ~~vitvP~~f~~~~r~~~~~a~~~agl~~~ 120 (655)
.-.++.|+.+++.||+.+-..|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456788999999999999999999999764
No 172
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=47.33 E-value=42 Score=25.03 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCcee
Q psy3270 75 TKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVL 120 (655)
Q Consensus 75 ~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~ 120 (655)
+.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||...
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~ 44 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKSK 44 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCccc
Confidence 44556666666544 45679999 899999999999999998764
No 173
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=46.43 E-value=56 Score=24.60 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcCCcee
Q psy3270 78 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVL 120 (655)
Q Consensus 78 ~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~agl~~~ 120 (655)
.+....+...+ ....+..|+.++..||..+-+.|+..||...
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 34444444433 2357899999999999999999999999764
No 174
>PRK12397 propionate kinase; Reviewed
Probab=46.05 E-value=2.6e+02 Score=29.99 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
+..++.+.|-..... ...+|.|+++||-+ ..+.||+.+.+.+.
T Consensus 304 f~yri~k~IGa~~a~----lggvDaiVFTGGIGEns~~vR~~ic~~L~ 347 (404)
T PRK12397 304 FAERIRATIGSYIMQ----MGGLDALVFTGGIGENSARARSAVCHNLQ 347 (404)
T ss_pred HHHHHHHHHHHHHHH----hCCCCEEEECCchhhCCHHHHHHHHhhhh
Confidence 344555544444443 24599999999986 67899999988773
No 175
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=46.03 E-value=2.6e+02 Score=29.03 Aligned_cols=198 Identities=20% Similarity=0.259 Sum_probs=93.0
Q ss_pred HcCCcceeecChHHHHHHHccccc----------ccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEEecC-CCCCC-c
Q psy3270 196 IAGLNVLRIINEPTAAALAYGLDK----------NLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAG-DTHLG-G 263 (655)
Q Consensus 196 ~AGl~~~~li~Ep~Aaal~~~~~~----------~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~-~~~lG-G 263 (655)
..|++.+.+||+=+|.|++...-. ....+...+|+-.|.| +-++.+--.++ ...++.+.| ...+. -
T Consensus 89 ~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~-~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 89 RLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGD-GYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETT-EEEEEEE-GGGSB---S
T ss_pred HhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCC-ceEeCCCccccccCCCC
Confidence 458899999999999988752211 1124567899988876 45555544555 344666553 33333 3
Q ss_pred chHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCCCCceEEEEccccCCcceEEeecHHHH---HHHhh
Q psy3270 264 EDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARF---EELCM 340 (655)
Q Consensus 264 ~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~---e~~~~ 340 (655)
.+.+..|.+++.+++..-.-.++ -+-+-+.++....-..+ .. .... .-.-.|++.-+ ..+|.
T Consensus 167 ~~~e~~l~~~l~~~~~~vs~E~v-lSG~GL~~ly~~l~~~~---~~--~~~~---------~~~~~I~~~A~~~~d~~a~ 231 (316)
T PF02685_consen 167 TDEEAELLRFLRRRYGRVSVERV-LSGRGLENLYRFLAGER---GA--EPPL---------LSAAEISAAALEGGDPLAR 231 (316)
T ss_dssp SHHHHHHHHHHHHHCTS-BHHHC-SSHHHHHHHHHHHHCCT---T----S-------------HHHHHHHHHCT--HHHH
T ss_pred CHHHHHHHHHHHHhcCCceeEee-cchhhHHHHHHHHHhcc---CC--CCCC---------CCHHHHHHHHHcCCCHHHH
Confidence 46677888888776632111111 12233333433211111 00 0000 00013333332 23445
Q ss_pred HHHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chH-HHH-HHHHhhh----------CCCcccCCCCchhHHHhHHH
Q psy3270 341 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIP-KIQ-KMLQDFF----------NGKSLNLSINPDEAVAYGAA 407 (655)
Q Consensus 341 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p-~v~-~~l~~~f----------~~~~v~~~~~p~~ava~GAa 407 (655)
..++.....+-+...+.-+...--.+|+|.||-+ +++ .++ +...+.| ...++....+++ +.-.||+
T Consensus 232 ~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~-~gL~Gaa 310 (316)
T PF02685_consen 232 EALDLFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPD-AGLLGAA 310 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCC-HHHHHHH
Confidence 5555555555555544333333345799999985 333 222 1222333 122344434444 6778998
Q ss_pred HHHH
Q psy3270 408 VQAA 411 (655)
Q Consensus 408 ~~a~ 411 (655)
.++.
T Consensus 311 ~~a~ 314 (316)
T PF02685_consen 311 AYAR 314 (316)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 176
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=45.54 E-value=70 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 160 ~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
.+..+++...+ ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34455555544 467889999999999999999999999864
No 177
>PRK09698 D-allose kinase; Provisional
Probab=45.34 E-value=3.5e+02 Score=27.55 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=30.8
Q ss_pred CcceEEEecCccch-----HHHHHHHHhhhC------CCcccCCCCchhHHHhHHHHHHH
Q psy3270 363 SIHDVVLVGGSIRI-----PKIQKMLQDFFN------GKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 363 ~i~~ViLvGG~s~~-----p~v~~~l~~~f~------~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
+++.|+|-||.+.. +.+++.+++..- ..++......+.+.++|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45778888887764 345666665441 11234444567788999998864
No 178
>KOG0797|consensus
Probab=45.19 E-value=7.6 Score=41.86 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=58.6
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCc-----eEEEecCCCCCHHHHHHHHHh-hhhcCCceeeeccchhHHHHhhcc
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVS-----EAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGL 135 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~-----~~vitvP~~f~~~~r~~~~~a-~~~agl~~~~~i~e~~Aaa~~~~~ 135 (655)
..+|..++++.+-+=+.-..++.+..+.+ .+|+-||--|....-+.++.. ....||+...++.|..|+..++|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 45677777777655555455667777665 578899999988777776665 778999999999999999999987
Q ss_pred c
Q psy3270 136 D 136 (655)
Q Consensus 136 ~ 136 (655)
.
T Consensus 275 s 275 (618)
T KOG0797|consen 275 S 275 (618)
T ss_pred c
Confidence 5
No 179
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=43.26 E-value=45 Score=35.91 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhh
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
++++-+.+++.+-.++.+.+.++++.+.+|..++++|-++..-.+...=-+.+
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 34455556677778888999999999999999999998877666554433444
No 180
>PTZ00280 Actin-related protein 3; Provisional
Probab=42.06 E-value=1.3e+02 Score=32.52 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHhhh-hcCCceeeeccchhHHHHhhcccccc---C
Q psy3270 67 EEISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDAGS-IAGLNVLRIINEPTAAALAYGLDKNL---K 140 (655)
Q Consensus 67 ~ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a~~-~agl~~~~~i~e~~Aaa~~~~~~~~~---~ 140 (655)
-+....++.++... .+.. .-..++++.|...+..+|+.+.+..- ..+.+.+.+.+++.++.++++..... .
T Consensus 81 wd~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~ 157 (414)
T PTZ00280 81 WDLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELG 157 (414)
T ss_pred HHHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccC
Confidence 34555666765432 2222 23457889999999999999988854 55888999999999998877443211 1
Q ss_pred CCeeEEEEeccccchhh
Q psy3270 141 GEKNVLIFDLGGGTFDV 157 (655)
Q Consensus 141 ~~~~~~~~d~g~~~~~~ 157 (655)
+....+++|+|.+.+..
T Consensus 158 g~~tglVVDiG~~~T~i 174 (414)
T PTZ00280 158 GTLTGTVIDSGDGVTHV 174 (414)
T ss_pred CceeEEEEECCCCceEE
Confidence 34466888888886653
No 181
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=41.13 E-value=1.7e+02 Score=26.98 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=28.2
Q ss_pred ceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEE
Q psy3270 201 VLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242 (655)
Q Consensus 201 ~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 242 (655)
.+.+.++-.|+|++...........+++.+-+|-| .-.+++
T Consensus 94 pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 94 PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred EEEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 56788999999988755433334567888888876 344444
No 182
>KOG2708|consensus
Probab=39.24 E-value=3e+02 Score=26.93 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=43.3
Q ss_pred eecHHHHHH-HhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhhCCCc-ccCCCCchhHHHhHH
Q psy3270 329 KITRARFEE-LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS-LNLSINPDEAVAYGA 406 (655)
Q Consensus 329 ~itr~~~e~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~-v~~~~~p~~ava~GA 406 (655)
+.|.+++.- +-+..+.-+++.-++++.-.+ -+.|++|||-+..-.+|++...+...+. .....|-.+++--|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 345544432 222234444445555665444 3569999999999999999988873221 122234455665665
Q ss_pred HH
Q psy3270 407 AV 408 (655)
Q Consensus 407 a~ 408 (655)
-+
T Consensus 299 MI 300 (336)
T KOG2708|consen 299 MI 300 (336)
T ss_pred HH
Confidence 44
No 183
>PF13941 MutL: MutL protein
Probab=38.68 E-value=12 Score=40.63 Aligned_cols=40 Identities=35% Similarity=0.478 Sum_probs=26.0
Q ss_pred eecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 203 RIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 203 ~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
.+++-|.|......+-.+ .....++++|+||-|||+--+.
T Consensus 227 ~i~PTP~AVl~~~~lla~-~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 227 PIMPTPAAVLRAAELLAE-GGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred cccCCHHHHHHHHHHHHh-cccCCEEEEEccCcccchhhhc
Confidence 455666665444322211 1456899999999999987654
No 184
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=38.07 E-value=1e+02 Score=31.29 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=31.5
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCC------cccCCCCchhHHHhHHHHHH
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGK------SLNLSINPDEAVAYGAAVQA 410 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~------~v~~~~~p~~ava~GAa~~a 410 (655)
+++.|+|-||.+..+.+.+.+++.+... ++....-.+.+.+.|||.++
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 3577888888777666666666665221 12233345678899999876
No 185
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=37.82 E-value=64 Score=34.78 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=50.0
Q ss_pred ceEEeecHHHHHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHH-hhhCCCcccCCCCchhHHH
Q psy3270 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ-DFFNGKSLNLSINPDEAVA 403 (655)
Q Consensus 325 ~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~-~~f~~~~v~~~~~p~~ava 403 (655)
.-.+.||..++.++... --.+..-++-.|++++++.++|+.|+|.||++.---+.+.+. -.+|........---.++-
T Consensus 290 ~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 34568999999876432 234556678889999999999999999999998877777765 2222221111112224566
Q ss_pred hHHHHHH
Q psy3270 404 YGAAVQA 410 (655)
Q Consensus 404 ~GAa~~a 410 (655)
.||.+..
T Consensus 369 ~GA~~~L 375 (412)
T PF14574_consen 369 AGARMAL 375 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6776554
No 186
>PRK10972 Z-ring-associated protein; Provisional
Probab=37.39 E-value=2.7e+02 Score=23.92 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=50.2
Q ss_pred HHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCC--ccCHHHHHHHHHHHHHHHHHHHHH
Q psy3270 569 VAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNS--LAEKEEFEDRLKTLQQTCTPIMTK 640 (655)
Q Consensus 569 ~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~--~a~~~~~~~kl~~L~~~~~~i~~r 640 (655)
.+|-+.|+.-+-++|+. ..+...|+-.+..+|+=..++|.... .....+++.++..|++.++..+..
T Consensus 28 ~~AA~~Ld~km~~ir~~-----~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~ 96 (109)
T PRK10972 28 NQAAEDLNQRLQDLKER-----TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLE 96 (109)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566554 34667889999999999999998742 345678999999999999988764
No 187
>KOG2707|consensus
Probab=36.87 E-value=5.2e+02 Score=27.13 Aligned_cols=216 Identities=17% Similarity=0.103 Sum_probs=116.8
Q ss_pred HHHHHHHHHhc---CCcceEEEEeCCCCCHHHHHHHHHHHHHcCC--cceeecChHHHHHHHcccccccCCCceEEEEEe
Q psy3270 158 SMREIAEVYLG---GKVSEAVITVPAYFNDSQRQATKDAGSIAGL--NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDL 232 (655)
Q Consensus 158 ~l~~~a~~~~~---~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl--~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~ 232 (655)
++.+.+-+..+ .+.+-+.+|+-.+..-.-+--+..|-..|+- ..+.=|.--.|-|+..-+..+ .-.-.++.+=+
T Consensus 88 ~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~-~v~FPFl~lLv 166 (405)
T KOG2707|consen 88 RLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD-SVRFPFLALLV 166 (405)
T ss_pred HHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC-CcCCceeeEee
Confidence 34444444433 2466778888777777777777777777753 344556777888887766543 24566788888
Q ss_pred CCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHhcCC---
Q psy3270 233 GGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS--- 309 (655)
Q Consensus 233 GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--- 309 (655)
-||++-+++.+-- + .++++...-|.. =|+.||..-. ..+.... +......-.+.|..-..-|.
T Consensus 167 SGGH~llvla~~~-~-~~~llg~TvDiA-pGe~lDK~ar---------~Lgl~~~--~e~~~~~g~aie~la~~~s~~~~ 232 (405)
T KOG2707|consen 167 SGGHTLLVLANGV-G-DHELLGQTVDIA-PGEALDKCAR---------RLGLLGH--PEDARSGGKAIEHLANRASADLH 232 (405)
T ss_pred eCCceEEEEeccc-c-ceeeeecccccc-hHHHHHHHHH---------HhcCCCC--ccchhhhhhHHHHHHhccCcccc
Confidence 8998888876532 2 567776655543 3566664321 1121111 11111111222222211111
Q ss_pred ---------CCceEEEEccccCCc---------ceEEeecHHHHHHH-hhHHHHhhhhHHHHHHHHcCCCCCCcceEEEe
Q psy3270 310 ---------STEASLEIDALHEGI---------DFYSKITRARFEEL-CMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 370 (655)
Q Consensus 310 ---------~~~~~i~i~~~~~~~---------~~~~~itr~~~e~~-~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLv 370 (655)
..++++++..+.... .-.....+.+|..- -...+..+.+....+++...+.+..+...++.
T Consensus 233 l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~S 312 (405)
T KOG2707|consen 233 LKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVIS 312 (405)
T ss_pred ccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEc
Confidence 111111111110000 00011222233221 12244555666667777766777778899999
Q ss_pred cCccchHHHHHHHHhhhC
Q psy3270 371 GGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 371 GG~s~~p~v~~~l~~~f~ 388 (655)
||-++..+|+..|+....
T Consensus 313 GGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 313 GGVASNQYIRGALEKLSA 330 (405)
T ss_pred CCccchHHHHHHHHHHHH
Confidence 999999999999998763
No 188
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=36.71 E-value=46 Score=34.34 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHcCCCCCCcceEEEecCccchHHHHHHHHhhh
Q psy3270 346 TLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387 (655)
Q Consensus 346 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 387 (655)
+.+.++++++.. .++.|+|.||-.....+++.|.+.+
T Consensus 246 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 334455555543 3677999999999999999999887
No 189
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.36 E-value=1.6e+02 Score=29.43 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=16.7
Q ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy3270 561 EDDKQRERVAAKNKLESYAFAVKQAAE 587 (655)
Q Consensus 561 ~D~~~~~~~~akN~LEs~iy~~r~~l~ 587 (655)
......+|..-.-+|.+-+++||...-
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDWI 106 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDWI 106 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333445555566677777788876553
No 190
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.97 E-value=99 Score=31.69 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=25.9
Q ss_pred cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCce
Q psy3270 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGT 236 (655)
Q Consensus 197 AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT 236 (655)
-|++ +.+-|+-.|+|++-..........+++.+.+|.|-
T Consensus 96 ~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi 134 (303)
T PRK13310 96 LGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV 134 (303)
T ss_pred HCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce
Confidence 4664 67899999998875333222234678888888653
No 191
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=35.76 E-value=15 Score=37.47 Aligned_cols=38 Identities=37% Similarity=0.565 Sum_probs=26.4
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchH
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDF 266 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~ 266 (655)
+...++=+|+||||+..|++.- | ++..+.. ..+||+-+
T Consensus 143 r~t~v~NlDIGGGTtN~slFD~--G---kv~dTaC-LdiGGRLi 180 (473)
T COG4819 143 RLTRVLNLDIGGGTTNYSLFDA--G---KVSDTAC-LDIGGRLI 180 (473)
T ss_pred hceEEEEEeccCCccceeeecc--c---cccccee-eecCcEEE
Confidence 4567888999999999999853 4 2333222 45888765
No 192
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.97 E-value=61 Score=27.51 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=31.2
Q ss_pred eEEEEEEeCCC-eeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHh
Q psy3270 506 KIEVTFDLDAN-GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558 (655)
Q Consensus 506 ~i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~ 558 (655)
...+.|.+|.+ |.+.|++.|..||+.. ..++++++-.+.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVI--------RqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVI--------RQIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEE--------EEE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEE--------EeCCcHHHHHHHHHHHHH
Confidence 35588889885 8899999999999763 136788887777766654
No 193
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=34.82 E-value=71 Score=24.76 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=37.3
Q ss_pred chhhhhhhcCCCCCChhhHhhhccCCeEEee-cCCcceEEEEEcCceeEeChhhhHHHHHH
Q psy3270 16 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLT 75 (655)
Q Consensus 16 ~~~~~krliG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~l~ 75 (655)
....+++++|..++...+.+.++++.|.+.. .++...+.+..-- .-...+++++..+++
T Consensus 7 ~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R-~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 7 SLDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYR-FDIEHEEDLIEEIAR 66 (70)
T ss_dssp EHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTS-TT-SSHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCc-CCcCcccHHHHHHHH
Confidence 3567899999999999999999999999986 4444455444211 124567777666654
No 194
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=34.72 E-value=5.5e+02 Score=27.54 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccc-hHHHHHHHHhhh
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIR-IPKIQKMLQDFF 387 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~-~p~v~~~l~~~f 387 (655)
+.-++.+.|-....... ..+|.|+++||-+. .+.+++.+.+.+
T Consensus 302 ~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 302 FAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 34445444444444331 46899999999997 578999998876
No 195
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=34.61 E-value=1.1e+02 Score=30.56 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.5
Q ss_pred CCceEEEEEeCCceeEEEEEE
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~ 243 (655)
..+.++++|+|+.|+|+.-+.
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~ 148 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIK 148 (330)
T ss_pred cCCceEEEecCCcccceEeec
Confidence 356789999999999988665
No 196
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=34.48 E-value=1.5e+02 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhccC
Q psy3270 602 SQACSATLTWLEGN 615 (655)
Q Consensus 602 ~~~l~e~~~WL~~~ 615 (655)
.+.=..+.+||+.|
T Consensus 108 sEsEK~IleWL~KN 121 (122)
T PLN00078 108 TESEKGILEWLDKN 121 (122)
T ss_pred CHHHHHHHHHHHcc
Confidence 33334677899875
No 197
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.05 E-value=2.8e+02 Score=28.61 Aligned_cols=110 Identities=20% Similarity=0.141 Sum_probs=58.4
Q ss_pred cCCCCCChhhHhhhc-cCCeEEeecCCcceEEEE--EcCc--ee--EeChhhhHHHHHHHHHHHHHHHhCCCCceEEE--
Q psy3270 24 IGRKFEDQKIQEDIK-HWPFTVVSDGGKPKIQVE--YKGE--IK--KFAPEEISSMVLTKMREIAEVYLGGKVSEAVI-- 94 (655)
Q Consensus 24 iG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~--~~~~--~~--~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vi-- 94 (655)
+|....+..++...+ ..|...+.-.|...+.|+ .... .+ ..+.-+++..-++.+.+.....+. +..-+|+
T Consensus 59 lGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~-~~d~VvlsG 137 (310)
T COG1105 59 LGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLE-SDDIVVLSG 137 (310)
T ss_pred cCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcc-cCCEEEEeC
Confidence 444433333333322 255555543444344443 3321 22 234445555555555555444333 2233555
Q ss_pred ecCCCCCHHHHHHHHHhhhhcCCce-eeeccchhHHHHhhc
Q psy3270 95 TVPAYFNDSQRQATKDAGSIAGLNV-LRIINEPTAAALAYG 134 (655)
Q Consensus 95 tvP~~f~~~~r~~~~~a~~~agl~~-~~~i~e~~Aaa~~~~ 134 (655)
|+|+.+...--..+++.|+..|..+ ++.-.++..+++.+.
T Consensus 138 SlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~ 178 (310)
T COG1105 138 SLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK 178 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC
Confidence 8899999999999999999988765 344444444444443
No 198
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=33.64 E-value=27 Score=35.75 Aligned_cols=42 Identities=29% Similarity=0.563 Sum_probs=26.0
Q ss_pred cceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEE
Q psy3270 200 NVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 200 ~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 243 (655)
++..+.+-|.|.+..... ......+++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~--~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAA--RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhh--hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 345566677776665544 122456899999999999999986
No 199
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.57 E-value=89 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=17.2
Q ss_pred HHHHHhccCC-ccCHHHHHHHHH
Q psy3270 607 ATLTWLEGNS-LAEKEEFEDRLK 628 (655)
Q Consensus 607 e~~~WL~~~~-~a~~~~~~~kl~ 628 (655)
..++||++++ .-|.+++++|.+
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 3578999984 589999988764
No 200
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=33.35 E-value=1.2e+02 Score=33.08 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.2
Q ss_pred ceEEEEEeCCceeEEEEEEEeCCceEEEEEecCCCCCCcchHHHHHH
Q psy3270 225 KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLV 271 (655)
Q Consensus 225 ~~vlV~D~GggT~dvsv~~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 271 (655)
..=+-+|+|.+++-..++.+..+.......+....--||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 34477999999999999999888677777777777789999997663
No 201
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=33.19 E-value=2.9e+02 Score=23.58 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=41.4
Q ss_pred cccchhhHHHHHHHHHhcC-CcceEEEEeCCCCCHH-HHHHHHHHHHHcCCcceeecChHHHHHHHcccccccCCCceEE
Q psy3270 151 GGGTFDVSMREIAEVYLGG-KVSEAVITVPAYFNDS-QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVL 228 (655)
Q Consensus 151 g~~~~~~~l~~~a~~~~~~-~~~~~vitVPa~~~~~-~r~~~~~a~~~AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vl 228 (655)
+.|.+-..+.+.++..+|. ...-.++..+..-+.. ..+.++++.+.. ...+..++
T Consensus 6 sHG~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~-----------------------~~~~~vli 62 (116)
T PF03610_consen 6 SHGSLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEEL-----------------------DEGDGVLI 62 (116)
T ss_dssp EETTHHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHC-----------------------CTTSEEEE
T ss_pred ECcHHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhc-----------------------cCCCcEEE
Confidence 3446667788888999998 4455566776665543 345555544321 12456678
Q ss_pred EEEeCCceeE
Q psy3270 229 IFDLGGGTFD 238 (655)
Q Consensus 229 V~D~GggT~d 238 (655)
++|++|||.-
T Consensus 63 l~Dl~ggsp~ 72 (116)
T PF03610_consen 63 LTDLGGGSPF 72 (116)
T ss_dssp EESSTTSHHH
T ss_pred EeeCCCCccc
Confidence 8999999853
No 202
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.61 E-value=4.3e+02 Score=26.49 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=48.9
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCcceeecChHHHHHHHcccccccCCCceEEEEEeCCceeEEEEEEEeCCceEEEEE
Q psy3270 178 VPAYFNDSQRQATKDAGSI---AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS 254 (655)
Q Consensus 178 VPa~~~~~~r~~~~~a~~~---AGl~~~~li~Ep~Aaal~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~ 254 (655)
+|.+|+ .|+.|+.. ++-. ..+++.-.||+..+..+.. ....+|+|+|-|++..+++. .+.+.-+..
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpa---a~palvVd~GngHttaalvd--edRI~gv~E 254 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA---ADPALVVDYGNGHTTAALVD--EDRIVGVYE 254 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc---cCceEEEEccCCceEEEEec--CCeEEEEee
Confidence 455553 34554433 3433 4556666666666665533 34899999999999988875 332444443
Q ss_pred ecCCCCCCcchHHHHHHHHH
Q psy3270 255 TAGDTHLGGEDFDNRLVTFF 274 (655)
Q Consensus 255 ~~~~~~lGG~~~d~~l~~~~ 274 (655)
+. ...+.-+.|...|.++.
T Consensus 255 HH-T~~Lspekled~I~rf~ 273 (342)
T COG4012 255 HH-TIRLSPEKLEDQIIRFV 273 (342)
T ss_pred cc-cccCCHHHHHHHHHHHH
Confidence 33 24455555555554444
No 203
>PRK07157 acetate kinase; Provisional
Probab=31.63 E-value=3.2e+02 Score=29.34 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=30.0
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCccchHH-HHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK-IQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~-v~~~l~~~f~ 388 (655)
++.++.+.|-......+ ..+|.|+++||-+.... ||+.+.+.+.
T Consensus 302 f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 302 YAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 33444444444433322 25899999999998877 9999998873
No 204
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=31.43 E-value=3e+02 Score=22.65 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhccC-CccCHHHHH
Q psy3270 595 DADKTSVSQACSATLTWLEGN-SLAEKEEFE 624 (655)
Q Consensus 595 ~~e~~~l~~~l~e~~~WL~~~-~~a~~~~~~ 624 (655)
|+-+..|.+.+.++++||.+. ...+.++++
T Consensus 58 pd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 58 PDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 556778888999999998875 334444443
No 205
>PRK12379 propionate/acetate kinase; Provisional
Probab=31.39 E-value=6.6e+02 Score=26.96 Aligned_cols=42 Identities=7% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhh
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFF 387 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f 387 (655)
+..++.+.|-...... ..+|.|+++||-+ ..+.||+.+.+.+
T Consensus 300 f~yri~k~IGa~~a~L----~~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 300 FVHRIARHIAGHAASL----HRLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 4445555444444333 2589999999987 4678899988776
No 206
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.04 E-value=1.4e+02 Score=27.94 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCC--ccCHHHHHHHHHHHHHHHHHHHH
Q psy3270 577 SYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNS--LAEKEEFEDRLKTLQQTCTPIMT 639 (655)
Q Consensus 577 s~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~--~a~~~~~~~kl~~L~~~~~~i~~ 639 (655)
+|+.+++..|. .++++|++++ ++.+++.+++.. ..+.++..+++-.=+++++.+..
T Consensus 5 efL~~L~~~L~----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLK----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHH----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45555555553 2455554443 445555555531 13455555555555555555553
No 207
>PLN02902 pantothenate kinase
Probab=29.88 E-value=2.9e+02 Score=32.76 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=30.8
Q ss_pred CCcceEEEecCccch-----HHHHHHHHhhh--CCCcccCCCCchhHHHhHHHHHHH
Q psy3270 362 GSIHDVVLVGGSIRI-----PKIQKMLQDFF--NGKSLNLSINPDEAVAYGAAVQAA 411 (655)
Q Consensus 362 ~~i~~ViLvGG~s~~-----p~v~~~l~~~f--~~~~v~~~~~p~~ava~GAa~~a~ 411 (655)
..++.|+++|.+-|- ..+...+. ++ +..+....-+--+.-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 457889999998653 33333443 33 233444555667889999987653
No 208
>PLN02377 3-ketoacyl-CoA synthase
Probab=29.27 E-value=1.3e+02 Score=33.33 Aligned_cols=54 Identities=7% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHcCCCCCCcceEEE-ecCccchHHHHHHHHhhhC
Q psy3270 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVL-VGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 335 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 388 (655)
++...+...+-+...++++|+++++++.+||.|+. +.+....|.+-.+|.+.+|
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 33334444445567788999999999999999877 4455568999999999994
No 209
>KOG1385|consensus
Probab=28.86 E-value=46 Score=35.33 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=17.8
Q ss_pred CceEEEEEeCCceeEEEEEE
Q psy3270 224 EKNVLIFDLGGGTFDVSVLA 243 (655)
Q Consensus 224 ~~~vlV~D~GggT~dvsv~~ 243 (655)
...+.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 57899999999999999865
No 210
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=28.78 E-value=77 Score=33.46 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=32.1
Q ss_pred CcceEEEecCccchHHHHHHHHhhhCCC-cccCC--CCchhHHHhHHHH
Q psy3270 363 SIHDVVLVGGSIRIPKIQKMLQDFFNGK-SLNLS--INPDEAVAYGAAV 408 (655)
Q Consensus 363 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v~~~--~~p~~ava~GAa~ 408 (655)
++|.|++.||-+..+.+++.+.+.+... ++..- .+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 5789999999999999999999887322 22222 2334677777653
No 211
>PLN03170 chalcone synthase; Provisional
Probab=28.74 E-value=1.5e+02 Score=32.04 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 341 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 341 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
...+=..+..+++|+++++++++|+.|+.+-.+. .+|.+.-.|.+.+|
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3444556778999999999999999988766544 69999999999995
No 212
>PLN03173 chalcone synthase; Provisional
Probab=28.69 E-value=1.6e+02 Score=31.65 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=38.1
Q ss_pred HHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 342 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
-.+=..+.++++|+++++++.+|+.|+.+..+. ..|.+--.|.+.+|
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 344455678899999999999999998776544 58999999999994
No 213
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=28.64 E-value=1.8e+02 Score=22.61 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=34.7
Q ss_pred EEEEEEeCCCeeEEEEEEeccCCCceeeeeecC--CCCCcHHHHHHHHHHHHH
Q psy3270 507 IEVTFDLDANGILNVSAKDSSTGKAERITIQND--KGRLSKDDIDRMLAEAEK 557 (655)
Q Consensus 507 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~--~~~l~~~ei~~~~~~~~~ 557 (655)
....+.++.+|.++|...+..+|... +.++.- ..-.|..+|.+++.+++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 45778999999999999999998763 233221 123567777777766543
No 214
>KOG1794|consensus
Probab=28.02 E-value=6.7e+02 Score=25.68 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=36.9
Q ss_pred eecCCcceEEEEEcCceeEeChhhhHHHHHHHHHHHHHHHhCCC----CceEEEecCCC
Q psy3270 45 VSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGK----VSEAVITVPAY 99 (655)
Q Consensus 45 ~~~~~~~~~~v~~~~~~~~~~~~ev~a~~l~~l~~~ae~~~~~~----i~~~vitvP~~ 99 (655)
+++++...-.-.-.+....+.+++.++.-|..++..|....|.+ ++.+.+++.+.
T Consensus 20 vd~~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~ 78 (336)
T KOG1794|consen 20 VDEDGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGT 78 (336)
T ss_pred ECCCCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeecccC
Confidence 34555443333333445667889999999999999998888763 55666666544
No 215
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.63 E-value=3.2e+02 Score=27.43 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhccC----Cc------cCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3270 595 DADKTSVSQACSATLTWLEGN----SL------AEKEEFEDRLKTLQQTCTPIMTKLHQA 644 (655)
Q Consensus 595 ~~e~~~l~~~l~e~~~WL~~~----~~------a~~~~~~~kl~~L~~~~~~i~~r~~e~ 644 (655)
+.|.......++++..|+... .. ....+|..|+..|+..++.......++
T Consensus 152 e~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555221 00 123456666666666665555444443
No 216
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=27.55 E-value=3.4e+02 Score=26.41 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=64.4
Q ss_pred EEecCCCCCHHHHHHHHHhhhhcCCceeeeccchh-----------------------HHHHhhccccccCCCeeEEEEe
Q psy3270 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT-----------------------AAALAYGLDKNLKGEKNVLIFD 149 (655)
Q Consensus 93 vitvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~-----------------------Aaa~~~~~~~~~~~~~~~~~~d 149 (655)
|||=-.+|+..+-..+..||+..|-..+++--+|. ..++..|.+. .+..+..-+|.
T Consensus 17 VIsGLnNFd~~~V~~i~~AA~~ggAt~vDIAadp~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdl-iEIGNfDsFY~ 95 (242)
T PF04481_consen 17 VISGLNNFDAESVAAIVKAAEIGGATFVDIAADPELVKLAKSLSNLPICVSAVEPELFVAAVKAGADL-IEIGNFDSFYA 95 (242)
T ss_pred heeCccccCHHHHHHHHHHHHccCCceEEecCCHHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCE-EEecchHHHHh
Confidence 45556778888888888888888887666666552 2333333221 11111112222
Q ss_pred ccccchhh----HHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 150 LGGGTFDV----SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 150 ~g~~~~~~----~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
.| ..|.. .|....+..+ +-....+|||-.....++-.+-.....+|.+.
T Consensus 96 qG-r~f~a~eVL~Lt~~tR~LL--P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 96 QG-RRFSAEEVLALTRETRSLL--PDITLSVTVPHILPLDQQVQLAEDLVKAGADI 148 (242)
T ss_pred cC-CeecHHHHHHHHHHHHHhC--CCCceEEecCccccHHHHHHHHHHHHHhCCcE
Confidence 22 22221 2334444444 66778999999999999888888888888754
No 217
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=27.46 E-value=2.1e+02 Score=30.73 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=31.0
Q ss_pred CcceEEEEeCCCCCHHHHHHHHHHHHHcCCcceeecChHHH-HHHHcccc
Q psy3270 170 KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA-AALAYGLD 218 (655)
Q Consensus 170 ~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~A-aal~~~~~ 218 (655)
-+.++|++-|..-+..--..+.-|+..+|.+.+.-+--.-| |||+||..
T Consensus 136 GV~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 136 GVKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp T-SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 36788888888765555678889999999999999988888 78899864
No 218
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.25 E-value=1.4e+02 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 173 EAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 173 ~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
.-.++.|+.+++.+|+.+...|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 55677899999999999999999999864
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.61 E-value=5.9e+02 Score=28.77 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHH
Q psy3270 564 KQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 632 (655)
Q Consensus 564 ~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~kl~~L~~ 632 (655)
.+++.++.+++|+++-.+++..+.. .-+.......+..++.-|.+. ....++++.++..|++
T Consensus 448 ~k~eie~L~~~l~~~~r~~~~~~~~------~rei~~~~~~I~~L~~~L~e~-~~~ve~L~~~l~~l~k 509 (652)
T COG2433 448 LKREIEKLESELERFRREVRDKVRK------DREIRARDRRIERLEKELEEK-KKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3455666677777776666654431 122233334444444434331 2344566666666663
No 220
>PLN03172 chalcone synthase family protein; Provisional
Probab=26.47 E-value=1.7e+02 Score=31.38 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=39.4
Q ss_pred hHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCcc-chHHHHHHHHhhhC
Q psy3270 340 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 388 (655)
Q Consensus 340 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 388 (655)
+...+=..+.++++|+++++++.+|+.|+++..+. .+|.+--.|.+.+|
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33445556678899999999999999988766554 69999999999994
No 221
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=25.96 E-value=14 Score=32.16 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCceEEEecCCCCCHHHHHHHHHhhhhcC---Cceee---------eccch-hHHHH
Q psy3270 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAG---LNVLR---------IINEP-TAAAL 131 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f~~~~r~~~~~a~~~ag---l~~~~---------~i~e~-~Aaa~ 131 (655)
+-++..|+...+.||+..+.++.+++++++... .+-+.++.+.++ +.... ++.+| .|+++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~g~s~----l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~ 118 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSIGGSK----LQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAI 118 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TTGGGG----STTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecCchhH----HHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEE
Confidence 556788999999999999999999999885543 344555555555 55555 66667 66654
No 222
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=25.65 E-value=43 Score=36.32 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=20.9
Q ss_pred HHcCCCCCCcceEEEecCc-cchH--HHHHHHHh
Q psy3270 355 NDAKLDKGSIHDVVLVGGS-IRIP--KIQKMLQD 385 (655)
Q Consensus 355 ~~~~~~~~~i~~ViLvGG~-s~~p--~v~~~l~~ 385 (655)
.+.|-+...++.|+-+||. ++.| ....+++.
T Consensus 381 ~q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 381 LQIGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred cccCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 3444455567889999996 7777 66666644
No 223
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=25.29 E-value=2e+02 Score=21.64 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 162 IAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 162 ~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
..+.+...+ ....++.|+.++..+|..+.+.|+..||..
T Consensus 7 ~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 7 MVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 334444433 336789999999999999999999998854
No 224
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=24.89 E-value=87 Score=33.62 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=25.7
Q ss_pred CCceEEEEEeCCceeEEEEEEEeCCceEEEEE
Q psy3270 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKS 254 (655)
Q Consensus 223 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~v~~ 254 (655)
....+|++|+||..+-++.+++.+.+.+.+..
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~ 104 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQ 104 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccccc
Confidence 56789999999999999999998544555443
No 225
>PRK08868 flagellar protein FlaG; Provisional
Probab=23.95 E-value=1.8e+02 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=33.9
Q ss_pred EEEEEEeCCC-eeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHh
Q psy3270 507 IEVTFDLDAN-GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558 (655)
Q Consensus 507 i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~ 558 (655)
..+.|.+|.+ |.+.|++.|..||... ..++++++-++.+.+.++
T Consensus 89 ~~L~F~vdeetgr~VVkViD~~T~EVI--------RQIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 89 KGLSFRVDEESGRDVVTIYEASTGDII--------RQIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred CceEEEEecCCCCEEEEEEECCCCcee--------eeCCCHHHHHHHHHHHHh
Confidence 4688999885 8888999999988753 236788888887776654
No 226
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.29 E-value=4.2e+02 Score=21.71 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhh--cHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCC
Q psy3270 546 DDIDRMLAEAEKYKAE--DDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNS 616 (655)
Q Consensus 546 ~ei~~~~~~~~~~~~~--D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~ 616 (655)
++++.++..+..+... +.-.....+++..+++.+..+++.+.+. ...-+++..+....+.++..+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA----ADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCh
Confidence 4555555555554432 2333445567777777777777776532 12334555666666666666653
No 227
>KOG3133|consensus
Probab=23.28 E-value=3.6e+02 Score=26.91 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCc----cCHHHHHHHHHHHHHHHHH
Q psy3270 573 NKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSL----AEKEEFEDRLKTLQQTCTP 636 (655)
Q Consensus 573 N~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~----a~~~~~~~kl~~L~~~~~~ 636 (655)
+.||.++..+-+.|-+. +-=...+++...++=.||.+|.. -+.+.|+.+++-++.++.+
T Consensus 142 g~le~~m~~iMqqllSK-----EILyeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~ 204 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK-----EILYEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESV 204 (267)
T ss_pred ccHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 55677776655555321 11135688888888999999743 2334455555554444433
No 228
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=23.10 E-value=3.2e+02 Score=26.76 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHcCCCCCCcceEEEecCccc--hHHHHHHHHhhhCC
Q psy3270 346 TLAPVERALNDAKLDKGSIHDVVLVGGSIR--IPKIQKMLQDFFNG 389 (655)
Q Consensus 346 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~--~p~v~~~l~~~f~~ 389 (655)
....++++|+++++++.+|+.|++...... .|.....+...++-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 346678899999999999999887655444 58888889998854
No 229
>PLN02939 transferase, transferring glycosyl groups
Probab=23.09 E-value=5e+02 Score=31.37 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhc
Q psy3270 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG---SKLSDADKTSVSQACSATLTWLE 613 (655)
Q Consensus 543 l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~---~~~~~~e~~~l~~~l~e~~~WL~ 613 (655)
+-.++++.++.++...++-|+.....+.-+.-|++++.++..++.... ..+++-+.+.+.+.++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 446788888888888888888888888889999999999888885333 33444444455555555555554
No 230
>PLN03168 chalcone synthase; Provisional
Probab=22.97 E-value=2e+02 Score=30.89 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=38.2
Q ss_pred hHHHHhhhhHHHHHHHHcCCCCCCcceEEEecCc-cchHHHHHHHHhhhC
Q psy3270 340 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 388 (655)
Q Consensus 340 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~ 388 (655)
+...+=..+..+++|+++++++++|+.|+.+-.+ -.+|.+--.|.+.+|
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 3344455677899999999999999999875333 358999999999994
No 231
>PTZ00004 actin-2; Provisional
Probab=22.81 E-value=2.9e+02 Score=29.40 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CCceEEEecCCCCCHHHHHHHHHh-hhhcCCceeeeccchhHHHHhhccccccCCCee
Q psy3270 68 EISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDA-GSIAGLNVLRIINEPTAAALAYGLDKNLKGEKN 144 (655)
Q Consensus 68 ev~a~~l~~l~~~ae~~~~~--~i~~~vitvP~~f~~~~r~~~~~a-~~~agl~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 144 (655)
+....++.++.. ..++. .-..+++|-|...+..+|+.+.+. -+..+++.+.+.+.+.+++.++|. ..
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~t 150 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TT 150 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ce
Confidence 445566666432 22332 345667888999999999888777 457899999999999999887754 34
Q ss_pred EEEEeccccchh
Q psy3270 145 VLIFDLGGGTFD 156 (655)
Q Consensus 145 ~~~~d~g~~~~~ 156 (655)
.+++|+|.+.+.
T Consensus 151 glVVDiG~~~t~ 162 (378)
T PTZ00004 151 GIVLDSGDGVSH 162 (378)
T ss_pred EEEEECCCCcEE
Confidence 566666665544
No 232
>PRK07738 flagellar protein FlaG; Provisional
Probab=22.07 E-value=2e+02 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.3
Q ss_pred EEEEEEeCCC-eeEEEEEEeccCCCceeeeeecCCCCCcHHHHHHHHHHHHHh
Q psy3270 507 IEVTFDLDAN-GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 558 (655)
Q Consensus 507 i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ei~~~~~~~~~~ 558 (655)
..+.|++|.+ |.+.|.+.|..||+.. ..++++++-++...+.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVI--------RQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVI--------REIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeee--------eeCCCHHHHHHHHHHHHH
Confidence 4688999884 8999999999888653 236778877777776654
No 233
>KOG4001|consensus
Probab=21.93 E-value=5.4e+02 Score=24.55 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=33.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcc
Q psy3270 566 RERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEG 614 (655)
Q Consensus 566 ~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~ 614 (655)
+.....+.+||.-|.+++.+++.+ +.-++++++...+..++..++|..
T Consensus 195 k~le~~k~~Le~~ia~~k~K~e~~-e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 195 KVLEDKKKELELKIAQLKKKLETD-EIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556778999999998888643 344566677777777777777765
No 234
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.93 E-value=7.6e+02 Score=25.57 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHHHhhhhcHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhccCCc---cC
Q psy3270 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSL---AE 619 (655)
Q Consensus 543 l~~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~---a~ 619 (655)
.+++++..+++++.+... +.........+++.-+-+.+..++. ..+++..+...+++++.-++.... ..
T Consensus 201 ~d~~eL~~lk~~l~~~~~---ei~~~~~~l~e~~~~l~~l~~~I~~-----~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQ---EIMIKVKKLEELEEELQELESKIED-----LTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 567888888766555433 2222333334444555555555543 256678888999999988887533 34
Q ss_pred HHHHHHHHHHHHHH
Q psy3270 620 KEEFEDRLKTLQQT 633 (655)
Q Consensus 620 ~~~~~~kl~~L~~~ 633 (655)
...++.+++.|++.
T Consensus 273 i~~Lk~~~~~Le~l 286 (312)
T smart00787 273 IEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44677777777654
No 235
>PTZ00323 NAD+ synthase; Provisional
Probab=21.59 E-value=8.2e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.8
Q ss_pred eEeChhhhHHHHHHHHHHHHHHHhCCCCceEEEecCCCC
Q psy3270 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYF 100 (655)
Q Consensus 62 ~~~~~~ev~a~~l~~l~~~ae~~~~~~i~~~vitvP~~f 100 (655)
..|.|++++......|++..+.. ....+||++.+.-
T Consensus 22 ~~~~~~~~i~~~~~~L~~~l~~~---g~~~vVVglSGGV 57 (294)
T PTZ00323 22 RAFNPAAWIEKKCAKLNEYMRRC---GLKGCVTSVSGGI 57 (294)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc---CCCcEEEECCCCH
Confidence 67999999988888888766552 4678999998883
No 236
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.59 E-value=7.8e+02 Score=23.80 Aligned_cols=108 Identities=15% Similarity=0.041 Sum_probs=64.4
Q ss_pred EeChhhhHHHHHHHHHHHHHHHhCC------CCceEEE-ecCCCCCHHHHHHHHHhhhhcCCceeeeccchhHHHHhhcc
Q psy3270 63 KFAPEEISSMVLTKMREIAEVYLGG------KVSEAVI-TVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 135 (655)
Q Consensus 63 ~~~~~ev~a~~l~~l~~~ae~~~~~------~i~~~vi-tvP~~f~~~~r~~~~~a~~~agl~~~~~i~e~~Aaa~~~~~ 135 (655)
.++-+..++.+++.....++.++.. .-.++++ ++|+.+-+.....+....+.+|+++..+
T Consensus 56 ~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~L------------- 122 (213)
T cd02069 56 FLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDL------------- 122 (213)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEEC-------------
Confidence 3344455567777766666544321 2346666 6677898999998888888898888643
Q ss_pred ccccCCCeeEEEEeccccchhhHHHHHHHHHhcCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCcc
Q psy3270 136 DKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNV 201 (655)
Q Consensus 136 ~~~~~~~~~~~~~d~g~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~~r~~~~~a~~~AGl~~ 201 (655)
|...-...+.+.+ ...++.-+.+|+-...+..+-+.+.+..+..|.++
T Consensus 123 ---------------G~~vp~e~~v~~~---~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~ 170 (213)
T cd02069 123 ---------------GVMVPIEKILEAA---KEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKI 170 (213)
T ss_pred ---------------CCCCCHHHHHHHH---HHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCC
Confidence 3222222333323 23355666677666666666666666666555533
No 237
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.42 E-value=1.9e+02 Score=22.11 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=26.4
Q ss_pred chhhhhhhcCCCCCChhhHhhhccCCeEEee
Q psy3270 16 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS 46 (655)
Q Consensus 16 ~~~~~krliG~~~~~~~~~~~~~~~~~~~~~ 46 (655)
....+.+++|..+++.++.+.++++.|.+..
T Consensus 7 ~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 7 RRERINRLLGLDLSAEEIEEILKRLGFEVEV 37 (71)
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHCCCeEEe
Confidence 3467889999999998999999999998864
No 238
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.01 E-value=2e+02 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHcCCCCCCcceEEE-ecCccchHHHHHHHHhhhC
Q psy3270 345 QTLAPVERALNDAKLDKGSIHDVVL-VGGSIRIPKIQKMLQDFFN 388 (655)
Q Consensus 345 ~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 388 (655)
-+...|+++|+++++++.+||.++. +..++-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3456788999999999999997654 6678899999999999994
Done!