RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3270
(655 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 820 bits (2121), Expect = 0.0
Identities = 347/493 (70%), Positives = 412/493 (83%), Gaps = 4/493 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG +V +AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 128 MKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 187
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GEKNVLIFDLGGGTFDVS+L I++G +F+VK+TAGDTHLGGEDFDNRLV F +F
Sbjct: 188 KKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDF 246
Query: 279 KRKHK-KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
KRK++ KD+ +N RA+RRLRT CERAKRTLSSST+A++EID+L EGID+ I+RARFEE
Sbjct: 247 KRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEE 306
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
LC D FR TL PVE+ L DA +DK S+H+VVLVGGS RIPK+Q +++DFFNGK SIN
Sbjct: 307 LCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSIN 366
Query: 398 PDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQ 457
PDEAVAYGAAVQAAIL+G+ SS +QD+LL+DV PLSLG+ETAGGVMTK++ERN+ IP K+
Sbjct: 367 PDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKK 426
Query: 458 QQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANG 517
Q FTTY+DNQ V IQVFEGERAMTKDNNLLG F+L GIPPAPRGVP+IEVTFD+DANG
Sbjct: 427 SQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANG 486
Query: 518 ILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLES 577
ILNVSA+D STGK+ +ITI NDKGRLSK DIDRM+ EAEKYKAED+ RERV AKN LE+
Sbjct: 487 ILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLEN 546
Query: 578 YAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCT 635
Y +++K +D KLSD+DK ++ +A L WLE N LAEKEEFE + K ++ C
Sbjct: 547 YCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCN 606
Query: 636 PIMTKLHQAGGKG 648
PIMTK++QA G G
Sbjct: 607 PIMTKMYQAAGGG 619
Score = 283 bits (726), Expect = 2e-86
Identities = 118/155 (76%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKIQVEYKGEIKKFAPE 67
VA NP+NTVFDAKRLIGRKF+D +Q D+KHWPF V + G KP I+V Y+GE K F PE
Sbjct: 59 VARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPE 118
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
EISSMVL KM+EIAE YLG +V +AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPT
Sbjct: 119 EISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPT 178
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AAA+AYGLDK GEKNVLIFDLGGGTFDVS+ I
Sbjct: 179 AAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTI 213
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 709 bits (1833), Expect = 0.0
Identities = 285/488 (58%), Positives = 362/488 (74%), Gaps = 13/488 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG V++AVITVPAYFND+QRQATKDAG IAGLNVLRIINEPTAAALAYGLD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K E+NVL+FDLGGGTFDVS+L I +G +F+V +T GDTHLGGEDFDNRLV F +EF
Sbjct: 181 KK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGEDFDNRLVDHFVEEF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHE-GIDFYSKITRARFE 336
K+K+ D+ + RA++RLR A E+AK LSS TE +L G D +TRA+FE
Sbjct: 239 KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFE 298
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
ELC DLF +TL PVE+AL DAKL K I +VVLVGGS RIP +Q+++++FF GK + +
Sbjct: 299 ELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGV 357
Query: 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK 456
NPDEAVA GAAVQA +LSG ++DVLL+DV PLSLGIET GGVMTK++ RN+ IP K
Sbjct: 358 NPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTK 415
Query: 457 QQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 516
+ Q F+T +DNQ AV IQV++GER M DN LLG+F L GIPPAPRGVP+IEVTFD+DAN
Sbjct: 416 KSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDAN 475
Query: 517 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
GIL VSAKD TGK ++ITI G LS D+I+RM+ +AE+Y AED K++ER+ AKN+ E
Sbjct: 476 GILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAE 534
Query: 577 SYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE-KEEFEDRLKTLQQTCT 635
Y ++++++ ++ G KL +ADK V + WL+ E KEE E + + LQ+
Sbjct: 535 EYVYSLEKSLKEEGDKLPEADKKKV----EEAIEWLKEELEGEDKEEIEAKTEELQKVVQ 590
Query: 636 PIMTKLHQ 643
PI +++Q
Sbjct: 591 PIGERMYQ 598
Score = 266 bits (682), Expect = 2e-80
Identities = 106/157 (67%), Positives = 121/157 (77%), Gaps = 4/157 (2%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPE 67
NPKNTVF KRLIGRKF D +Q DIKH P+ VV G ++V Y GE F PE
Sbjct: 54 AVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPE 111
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+IS+MVL K++E AE YLG V++AVITVPAYFND+QRQATKDAG IAGLNVLRIINEPT
Sbjct: 112 QISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPT 171
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AAALAYGLDK E+NVL+FDLGGGTFDVS+ EI +
Sbjct: 172 AAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGD 207
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 675 bits (1744), Expect = 0.0
Identities = 260/522 (49%), Positives = 350/522 (67%), Gaps = 43/522 (8%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 121 LKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K KG++ +L++DLGGGTFDVS+L I +G +F+V ST GDTHLGG+DFD R++ + ADEF
Sbjct: 181 K--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEF 237
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI-------DA---LHEGIDFYS 328
K+++ D+ + A++RL+ A E+AK LSS+ + EI DA H I
Sbjct: 238 KKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQT--EINLPFITADASGPKHLEI---- 291
Query: 329 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388
K+TRA+FEEL DL +T+ P ++AL DA L I +V+LVGGS R+P +Q+++++FF
Sbjct: 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF- 350
Query: 389 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 448
GK N +NPDE VA GAA+Q +L+GD ++DVLL+DV PLSLGIET GGVMTK++E
Sbjct: 351 GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIE 406
Query: 449 RNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIE 508
RN+ IP K+ Q F+T +DNQ AVTI V +GER M DN LG FNLTGIPPAPRGVP+IE
Sbjct: 407 RNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466
Query: 509 VTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRER 568
VTFD+DANGI++VSAKD TGK + ITI G LS ++I+RM+ +AE ED K++E
Sbjct: 467 VTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAEEDKKRKEL 525
Query: 569 VAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLK 628
V A+N+ +S + ++ ++ G K+ +K + A L+G +KE + + +
Sbjct: 526 VEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTE 582
Query: 629 TLQQTCTPIMTKLHQAGGKGP---------------DVEEVD 655
L Q + ++Q + EEV
Sbjct: 583 ELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDAEFEEVK 624
Score = 243 bits (622), Expect = 1e-71
Identities = 97/155 (62%), Positives = 122/155 (78%), Gaps = 9/155 (5%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRL+GR+ E+ +Q+DIK P+ +V D G VE G KK+ P+EI
Sbjct: 60 TNPENTIFSIKRLMGRRDEE--VQKDIKLVPYKIVKADNGDAW--VEIDG--KKYTPQEI 113
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK KG++ +L++DLGGGTFDVS+ EI +
Sbjct: 174 ALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGD 206
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 607 bits (1567), Expect = 0.0
Identities = 260/489 (53%), Positives = 341/489 (69%), Gaps = 15/489 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K+ K ++ +L+FDLGGGTFDVS+L I +G F+V STAGDTHLGG+DFD R++ + ADEF
Sbjct: 178 KS-KKDEKILVFDLGGGTFDVSILEIGDGV-FEVLSTAGDTHLGGDDFDQRIIDWLADEF 235
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRAR 334
K++ D+ + A++RL+ A E+AK LSS + I A G +TRA+
Sbjct: 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEEL DL +T PV +AL DA L I +V+LVGGS RIP +Q++++DFF GK N
Sbjct: 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNK 354
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
S+NPDE VA GAA+Q +L GD ++DVLL+DV PLSLGIET GGVMTK++ERN+ IP
Sbjct: 355 SVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 410
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ Q F+T +DNQ AV I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+D
Sbjct: 411 TKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDID 470
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGIL+VSAKD TGK + ITI G LS+++I+RM+ EAE ED K++E + A+N
Sbjct: 471 ANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRKEEIEARNN 529
Query: 575 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTC 634
+S A+ ++ +++G KL +K + +A + L+G EE + + + LQQ
Sbjct: 530 ADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGED---VEEIKAKTEELQQAL 586
Query: 635 TPIMTKLHQ 643
+ ++Q
Sbjct: 587 QKLAEAMYQ 595
Score = 222 bits (567), Expect = 5e-64
Identities = 92/153 (60%), Positives = 123/153 (80%), Gaps = 7/153 (4%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
NP+NT++ KR +GR+F+ ++ E+ K P+ VV DGG +++V+ K ++ P+EIS+
Sbjct: 59 NPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKVDGK----EYTPQEISA 112
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG IAGL VLRIINEPTAAAL
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 172
Query: 132 AYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AYGLDK+ K ++ +L+FDLGGGTFDVS+ EI +
Sbjct: 173 AYGLDKS-KKDEKILVFDLGGGTFDVSILEIGD 204
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 561 bits (1447), Expect = 0.0
Identities = 265/486 (54%), Positives = 350/486 (72%), Gaps = 14/486 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG KV++AVITVPAYFND+QRQATKDA IAGLNVLR+INEPTAAALAYGLD
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K EK VL++DLGGGTFDVS+L I +G +F+V +T GD HLGG+DFDN L+ + EF
Sbjct: 168 K--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEF 224
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K K D+ ++ A++RLR A E+AK LSS+T+ S+ + ++ ID ++TRA+FEEL
Sbjct: 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEEL 284
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+DL +T+ PVE+AL DA L+K I V+LVGGS RIP +Q+++++FF GK SINP
Sbjct: 285 ILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINP 343
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV T I+ERN+ IP K+
Sbjct: 344 DEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKS 399
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
Q F+T +D Q AV I VF+GER M DN LG F L GIPPAPRGVP+IEVTFD+DANGI
Sbjct: 400 QEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNV+AKD TGK + ITI+ G LS ++I+RM+ +AE A D K RE V A+N+ ES
Sbjct: 460 LNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESL 518
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
+++++A ++ K+S+ +K + +A + LEG EKEE + +++ LQ+ +
Sbjct: 519 IYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEIKAKIEELQEVTQKLA 573
Query: 639 TKLHQA 644
K +Q
Sbjct: 574 EKKYQQ 579
Score = 187 bits (478), Expect = 9e-52
Identities = 92/155 (59%), Positives = 107/155 (69%), Gaps = 24/155 (15%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KR IGR KI VE G KK+ PEEI
Sbjct: 63 VDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEI 100
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+M+LTK++E AE YLG KV++AVITVPAYFND+QRQATKDA IAGLNVLR+INEPTAA
Sbjct: 101 SAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAA 160
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK EK VL++DLGGGTFDVS+ EI +
Sbjct: 161 ALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGD 193
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 521 bits (1344), Expect = 0.0
Identities = 208/256 (81%), Positives = 228/256 (89%), Gaps = 1/256 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 122 MKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GE+NVLIFDLGGGTFDVS+L I++G +F+VK+TAGDTHLGGEDFDNRLV F EF
Sbjct: 182 KKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVNHFVQEF 240
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHKKDI N RA+RRLRTACERAKRTLSSST+AS+EID+L EGIDFY+ ITRARFEEL
Sbjct: 241 KRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEEL 300
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DLFR TL PVE+ L DAKLDK IHD+VLVGGS RIPK+QK+LQDFFNGK LN SINP
Sbjct: 301 CADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 360
Query: 399 DEAVAYGAAVQAAILS 414
DEAVAYGAAVQAAILS
Sbjct: 361 DEAVAYGAAVQAAILS 376
Score = 316 bits (813), Expect = e-102
Identities = 124/156 (79%), Positives = 134/156 (85%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGRKF D +Q D+KHWPF VV+ GGKP I VEYKGE K F PEE
Sbjct: 54 VAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEE 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
ISSMVLTKM+EIAE YLG V+ AVITVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 114 ISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK GE+NVLIFDLGGGTFDVS+ I +
Sbjct: 174 AAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIED 209
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 530 bits (1367), Expect = 0.0
Identities = 247/472 (52%), Positives = 325/472 (68%), Gaps = 13/472 (2%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A YLG V++AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAA+LAYGLDK K
Sbjct: 127 ASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDK--K 184
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ +L+FDLGGGTFDVS+L + +G +F+V ST+GDTHLGG+DFD ++V + EFK+K
Sbjct: 185 NNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKE 243
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRARFEEL 338
D+ + +A++RL A E+AK LS+ T+ + I A G +TRA+FEEL
Sbjct: 244 GIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEEL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DL + PVE AL DAKLDK I +VVLVGGS RIP IQ++++ GK N S+NP
Sbjct: 304 CSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNP 362
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE VA GAAVQA +L+G+ ++D+LL+DV PLSLG+ET GGVMTKI+ RN+ IP K+
Sbjct: 363 DEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
+ F+T DNQ V I V +GER + KDN LGTF L GIPPAPRGVP+IEVTFD+DANGI
Sbjct: 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
L+V+AKD TGK + ITIQ L KD+++RM+ EAEK AED ++RE++ KN+ ES
Sbjct: 479 LSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESL 537
Query: 579 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 630
+ ++ ++ K+S+ K + L+ ++ + + L+
Sbjct: 538 CYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKA 589
Score = 197 bits (502), Expect = 7e-55
Identities = 91/154 (59%), Positives = 112/154 (72%), Gaps = 5/154 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
+NP+NT + KR IGRKF + I E+ K + V +D I++E K F+PEEIS
Sbjct: 60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDS-NGNIKIECPALNKDFSPEEIS 116
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL K+ E A YLG V++AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAA+
Sbjct: 117 AQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAS 176
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
LAYGLDK K + +L+FDLGGGTFDVS+ E+ +
Sbjct: 177 LAYGLDK--KNNETILVFDLGGGTFDVSILEVGD 208
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 530 bits (1366), Expect = 0.0
Identities = 243/500 (48%), Positives = 334/500 (66%), Gaps = 20/500 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG V++AVITVPAYF D+QRQATKDAG+IAGL VLRIINEPTAAALAYGLD
Sbjct: 121 LKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLD 180
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + E+ +L+FDLGGGTFDVS+L + +G +F+VK+TAG+ HLGG+DFDN +V + + F
Sbjct: 181 KQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL--------EIDALHEGIDFYSKI 330
+++ D+ + A++RLR A E+AK LSS S+ E H ++
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMEL---- 294
Query: 331 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK 390
TRA+FEEL DL T+ P+++AL DA L I V+LVGGS RIP +Q+ +Q FF GK
Sbjct: 295 TRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK 354
Query: 391 SLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERN 450
+ S+NPDEAVA GAA+QA +L G+ ++D+LL+DV PLSLGIET G V TKI+ERN
Sbjct: 355 QPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERN 410
Query: 451 SRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVT 510
+ IP + Q F+T +D Q +V I V +GERAM KDN LG F LTGIPPAPRGVP+IEV+
Sbjct: 411 TTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVS 470
Query: 511 FDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVA 570
F++D NGIL VSA+D TG+ + I I N G LS ++I+RM EAEKY ED ++++ +
Sbjct: 471 FEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIE 529
Query: 571 AKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 630
KN+ +S ++ + +++G +S+ K Q L ++ EE + +L+
Sbjct: 530 LKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNI-SLEELKQQLEEF 588
Query: 631 QQTCTPIMTKLHQAGGKGPD 650
QQ I +++Q GG
Sbjct: 589 QQALLAIGAEVYQQGGSQTT 608
Score = 183 bits (467), Expect = 7e-50
Identities = 85/148 (57%), Positives = 113/148 (76%), Gaps = 6/148 (4%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
N +NTV+ KR IGR+++D +E+ P+T V G + V+ +G + + P+EIS+
Sbjct: 61 NAENTVYSIKRFIGRRWDDT--EEERSRVPYTCVK-GRDDTVNVQIRG--RNYTPQEISA 115
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
M+L K+++ AE YLG V++AVITVPAYF D+QRQATKDAG+IAGL VLRIINEPTAAAL
Sbjct: 116 MILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAAL 175
Query: 132 AYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
AYGLDK + E+ +L+FDLGGGTFDVS+
Sbjct: 176 AYGLDKQDQ-EQLILVFDLGGGTFDVSI 202
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 510 bits (1316), Expect = e-174
Identities = 250/499 (50%), Positives = 344/499 (68%), Gaps = 16/499 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG KV +AVITVPAYFNDSQRQATKDAG IAGL+VLRIINEPTAAALA+G+D
Sbjct: 162 MKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMD 221
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
KN K + ++DLGGGTFD+S+L I G +F+VK+T G+T LGGEDFD R++ + EF
Sbjct: 222 KN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEGID-FYSKITRAR 334
K++ D+ + A++RLR A E AK LSS T+ + I A G K++RA+
Sbjct: 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAK 338
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
EEL DL ++T+ P E+ + DA + K ++DV+LVGG R+PK+ + ++ F GK +
Sbjct: 339 LEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSK 397
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDEAVA GAA+QA +L G+ I+D+LL+DV PLSLGIET GGV T+++ RN+ IP
Sbjct: 398 GVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIP 453
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ Q F+T +DNQ V I+VF+GER M DN LLG F+L GIPPAPRGVP+IEVTFD+D
Sbjct: 454 TKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVD 513
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI+N+SA D STGK + ITIQ+ G LS ++I++M+ EAE+YK +D+K++E V AKN+
Sbjct: 514 ANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNE 572
Query: 575 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTC 634
E+ ++V++ D K+SDADK + Q + + L + + +D+ K LQ+
Sbjct: 573 AETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDV---DSIKDKTKQLQEAS 629
Query: 635 TPIMTKLHQAGGKGPDVEE 653
I + ++ G E
Sbjct: 630 WKISQQAYKQGNSDNQQSE 648
Score = 193 bits (493), Expect = 3e-53
Identities = 92/159 (57%), Positives = 119/159 (74%), Gaps = 11/159 (6%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEIS 70
NP+NTVF KRLIGR++++ +++ K P+ +V + G +E +G KK++P +I
Sbjct: 100 NPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDA--WIEAQG--KKYSPSQIG 155
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL KM+E AE YLG KV +AVITVPAYFNDSQRQATKDAG IAGL+VLRIINEPTAAA
Sbjct: 156 AFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAA 215
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
LA+G+DKN K + ++DLGGGTFD+S+ EI LGG
Sbjct: 216 LAFGMDKN--DGKTIAVYDLGGGTFDISILEI----LGG 248
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 492 bits (1270), Expect = e-167
Identities = 224/465 (48%), Positives = 311/465 (66%), Gaps = 17/465 (3%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A YLG V+ AVITVPAYFNDSQRQAT+DAG IAGL V RI+NEPTAAALAYGLD+
Sbjct: 127 ASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDR--S 184
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ VL+FDLGGGTFDVS+L + G +F+VK+T+GDT LGG DFD R+V + A++F K
Sbjct: 185 SSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 283 KKDILANTRAVRRLRTACERAKRTLS--SSTEASLE-IDALHEG-IDFYSKITRARFEEL 338
D+ + +A++RL A E+AK LS S T+ SL I A +G +++ R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C DL + L PV+RAL DA L I +VVLVGGS R+P +Q++++ + N ++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DE VA GAA+QA IL+G+ ++D+LL+DV PLSLG+ET GGVM K++ RN+ IP ++
Sbjct: 363 DEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS 418
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
F+T +NQ++V I V++GER M DN LG F L+GIPPAPRGVP+++V FD+DANGI
Sbjct: 419 DVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGI 478
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
L VSA D +TG+ + +TIQ LS+ +++RM+ EAE ED ++RER+ +N+ +
Sbjct: 479 LQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTL 537
Query: 579 AFA----VKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE 619
++ AA + G ++ + +V A LE + E
Sbjct: 538 IAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
Score = 192 bits (491), Expect = 6e-53
Identities = 83/157 (52%), Positives = 114/157 (72%), Gaps = 13/157 (8%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKI---QVEYKGEIKKFAP 66
+NP+NT ++ KR IGR++++ + + K P+T+ + G +I ++E ++FAP
Sbjct: 60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLE-----REFAP 112
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEP 126
EE+S+M+L K+ + A YLG V+ AVITVPAYFNDSQRQAT+DAG IAGL V RI+NEP
Sbjct: 113 EELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEP 172
Query: 127 TAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
TAAALAYGLD+ + VL+FDLGGGTFDVS+ E+
Sbjct: 173 TAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVG 207
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 481 bits (1239), Expect = e-162
Identities = 242/493 (49%), Positives = 326/493 (66%), Gaps = 20/493 (4%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
A +L KV++AVITVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA+LAYG +K K
Sbjct: 164 ASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEK--K 221
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
+ +L+FDLGGGTFDVSVL + +G +F+V ST+GDTHLGG+DFD R+V + A FK+
Sbjct: 222 SNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDE 280
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG---IDFYSKITRARFE 336
D+L + +A++RL A E+AK LSS T+ S+ I A +G ID + +TRA+FE
Sbjct: 281 GIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHID--TTLTRAKFE 338
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
ELC DL + PVE AL DAKL I +V+LVGGS RIP +Q++++ GK N+++
Sbjct: 339 ELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTV 397
Query: 397 NPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCK 456
NPDE VA GAAVQA +L+G+ S D++L+DV PLSLG+ET GGVMTKI+ RN+ +P
Sbjct: 398 NPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTS 453
Query: 457 QQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 516
+ + F+T +D Q +V I V +GER +DN LG+F L GIPPAPRGVP+IEV FD+DAN
Sbjct: 454 KSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN 513
Query: 517 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
GIL+VSA D TGK + ITI L KD+++RM+ EAEK+ ED ++R+ V KN+ +
Sbjct: 514 GILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQAD 572
Query: 577 SYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTP 636
S + ++ ++ G K+ K V + S ++ +D + L Q
Sbjct: 573 SVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGST---QKMKDAMAALNQEVMQ 629
Query: 637 IMTKLHQAGGKGP 649
I L+ G G
Sbjct: 630 IGQSLYNQPGAGG 642
Score = 177 bits (450), Expect = 2e-47
Identities = 87/155 (56%), Positives = 109/155 (70%), Gaps = 7/155 (4%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEI 69
+NP+NT F KR IGRK + + E+ K + VV D G K+ G K+FA EEI
Sbjct: 97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEI 152
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL K+ + A +L KV++AVITVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA
Sbjct: 153 SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 212
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
+LAYG +K K + +L+FDLGGGTFDVS+ E+ +
Sbjct: 213 SLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGD 245
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 434 bits (1120), Expect = e-145
Identities = 194/452 (42%), Positives = 281/452 (62%), Gaps = 27/452 (5%)
Query: 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
++R+ AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAA+AYGL
Sbjct: 136 ALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGL 195
Query: 218 DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADE 277
D +G + ++DLGGGTFD+S+L + +G +F+V +T GD+ LGG+DFD+ L AD
Sbjct: 196 DSGQEG--VIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGDDFDHLL----ADW 248
Query: 278 FKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
+ + R L A AK LS + + + AL +G ITR +F
Sbjct: 249 ILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV-ALWQGE-----ITREQFNA 302
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
L L ++TL RAL DA ++ + +VV+VGGS R+P +++ + +FF L SI+
Sbjct: 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLT-SID 361
Query: 398 PDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQ 457
PD+ VA GAA+QA IL+G+ + D+LL+DV PLSLG+ET GG++ KI+ RN+ IP +
Sbjct: 362 PDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVAR 419
Query: 458 QQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANG 517
Q FTT+ D Q A+ I V +GER + D L F L GIPP G +I VTF +DA+G
Sbjct: 420 AQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADG 479
Query: 518 ILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQR-----ERVAAK 572
+L+V+A + STG I ++ G L+ D+I RML ++ + AE+D Q ++V A+
Sbjct: 480 LLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSH-AEEDMQARALAEQKVEAE 537
Query: 573 NKLESYAFAVKQAAEDSGSKLSDADKTSVSQA 604
LE A++ A G LS A++ ++ A
Sbjct: 538 RVLE----ALQAALAADGDLLSAAERAAIDAA 565
Score = 173 bits (440), Expect = 3e-46
Identities = 77/150 (51%), Positives = 104/150 (69%), Gaps = 9/150 (6%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFT-VVSDGGKPKIQVEYKGEIKKFAPEE 68
A +PKNT+ KR +GR D IQ+ H P+ V S+ G P I+ +G +P E
Sbjct: 75 AQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA-QGLK---SPVE 128
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+S+ +L +R+ AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTA
Sbjct: 129 VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTA 188
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVS 158
AA+AYGLD +G + ++DLGGGTFD+S
Sbjct: 189 AAIAYGLDSGQEG--VIAVYDLGGGTFDIS 216
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 427 bits (1100), Expect = e-142
Identities = 204/474 (43%), Positives = 285/474 (60%), Gaps = 22/474 (4%)
Query: 140 KGEKNVLIFDLGGGT---FDVS------MREIAEVYLGGKVSEAVITVPAYFNDSQRQAT 190
G ++ GT +VS +++ AE LGG + AVITVPAYF+D+QRQAT
Sbjct: 89 DGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQAT 148
Query: 191 KDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLF 250
KDA +AGLNVLR++NEPTAAA+AYGLDK E ++DLGGGTFDVS+L + +G +F
Sbjct: 149 KDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VF 205
Query: 251 QVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS 310
+V +T GD+ LGG+DFD+ L + K+ L N R L A AK L+
Sbjct: 206 EVLATGGDSALGGDDFDHALAKWI---LKQLGISADL-NPEDQRLLLQAARAAKEALT-- 259
Query: 311 TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 370
S+E+D +G DF K+TR FE L L ++TL+ RAL DA L I VVLV
Sbjct: 260 DAESVEVDFTLDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLV 319
Query: 371 GGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVA 430
GGS R+P +++ + + F + L I+PD+ VA GAA+QA +L+G+ D+LL+DV
Sbjct: 320 GGSTRMPLVRRAVAELFGQEPLT-DIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVT 376
Query: 431 PLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLG 490
PLSLGIET GG++ KI+ RN+ IP + Q FTTY D Q A+ I V +GER + +D L
Sbjct: 377 PLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLA 436
Query: 491 TFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDR 550
F L GIPP G +I VTF +DA+G+L VSA++ STG + I ++ G LS ++I+R
Sbjct: 437 RFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIER 495
Query: 551 MLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQA 604
ML ++ K+ ED R K + E A++ A G LS+ ++ ++ A
Sbjct: 496 MLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAA 549
Score = 162 bits (411), Expect = 1e-42
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 13 PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 72
PKNT+ KRL+GR ED K + P+ V DG +++ P E+S+
Sbjct: 59 PKNTISSVKRLMGRSIEDIKTFSIL---PYRFV-DGPGEMVRLRTVQGTV--TPVEVSAE 112
Query: 73 VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 132
+L K+++ AE LGG + AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAA+A
Sbjct: 113 ILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVA 172
Query: 133 YGLDKNLKGEKNVLIFDLGGGTFDVS 158
YGLDK E ++DLGGGTFDVS
Sbjct: 173 YGLDKA--SEGIYAVYDLGGGTFDVS 196
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 418 bits (1076), Expect = e-142
Identities = 164/253 (64%), Positives = 203/253 (80%), Gaps = 2/253 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG KV AV+TVPAYFND+QRQATKDAG+IAGLNV+RIINEPTAAA+AYGLD
Sbjct: 124 MKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLD 183
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K GEKN+L+FDLGGGTFDVS+L ID G +F+V +T GDTHLGGEDFD R++ F F
Sbjct: 184 KK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEHFIKLF 241
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K+KH KDI + RA+++LR E+AKR LSS + +EI++L +G DF +TRA+FEEL
Sbjct: 242 KKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEEL 301
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MDLF++TL PV++ L DA L K I ++VLVGGS RIPK+Q++L++FFNGK + INP
Sbjct: 302 NMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINP 361
Query: 399 DEAVAYGAAVQAA 411
DEAVAYGAAVQA
Sbjct: 362 DEAVAYGAAVQAG 374
Score = 274 bits (702), Expect = 3e-86
Identities = 110/154 (71%), Positives = 132/154 (85%), Gaps = 1/154 (0%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+FD KRLIGRKF+D+++Q+DIK P+ VV+ GKP I+V+ KGE K F+PEE
Sbjct: 56 ATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEE 115
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+MVLTKM+EIAE YLG KV AV+TVPAYFND+QRQATKDAG+IAGLNV+RIINEPTA
Sbjct: 116 ISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 175
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AA+AYGLDK GEKN+L+FDLGGGTFDVS+ I
Sbjct: 176 AAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTI 208
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 409 bits (1051), Expect = e-134
Identities = 220/468 (47%), Positives = 316/468 (67%), Gaps = 16/468 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE +LG KVS AV+T PAYFND+QRQATKDAG+IAGLNV+R++NEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + + ++DLGGGTFD+SVL I G +F+VK+T GDTHLGGEDFD L + +EF
Sbjct: 208 KT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID----FYSKITRAR 334
++ D+ A++R+R A E+AK LSS+ E + + + D I+R++
Sbjct: 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSK 324
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FE + L +++AP ++ + DA ++ I+DVVLVGG R+PK+ + ++ FF K
Sbjct: 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFR 383
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDEAVA GAA +L GD ++ ++L+DV PLSLGIET GGV T+++ +N+ IP
Sbjct: 384 GVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIP 439
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
K+ QTF+T +DNQ V I+VF+GER M DN ++G F+L GIPPAPRGVP+IEVTFD+D
Sbjct: 440 TKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDID 499
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI +V+AKD +TGK + ITI + G LSK+ I++M+ ++E++ D +RE V +N
Sbjct: 500 ANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKRELVEVRNN 558
Query: 575 LESYA-FAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKE 621
E+ A +Q E +SDA+K +V + +E ++A+ +
Sbjct: 559 AETQLTTAERQLGE--WKYVSDAEKENVKTLVAELRKAMENPNVAKDD 604
Score = 175 bits (445), Expect = 6e-47
Identities = 87/153 (56%), Positives = 118/153 (77%), Gaps = 6/153 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEIS 70
NP++T + KRLIGR+FED+ IQ+DIK+ P+ +V + G +Q G K+++P +I
Sbjct: 85 NPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ---DGNGKQYSPSQIG 141
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+ VL KM+E AE +LG KVS AV+T PAYFND+QRQATKDAG+IAGLNV+R++NEPTAAA
Sbjct: 142 AFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAA 201
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
LAYG+DK + + ++DLGGGTFD+S+ EIA
Sbjct: 202 LAYGMDKT--KDSLIAVYDLGGGTFDISVLEIA 232
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 360 bits (927), Expect = e-120
Identities = 138/253 (54%), Positives = 181/253 (71%), Gaps = 2/253 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG V+EAVITVPAYFND+QR+ATK+A IAGLNV+R+INEPTAAALAYGLD
Sbjct: 119 LKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLD 178
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + + +L+FDLGGGTFDVS++ ++ G F+V +T GD HLGG+DFDN L + A++F
Sbjct: 179 KKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGGDDFDNALADYLAEKF 237
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K K D+ + RA+RRL+ A E+AK LSSS EA++ + L G D ++TR FEEL
Sbjct: 238 KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEEL 297
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
L +T+ VER L DA L I V+LVGGS RIP ++++L++ F K SI+P
Sbjct: 298 IRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKK-PLRSIDP 356
Query: 399 DEAVAYGAAVQAA 411
DEAVA GAA+ AA
Sbjct: 357 DEAVALGAAIYAA 369
Score = 212 bits (543), Expect = 6e-63
Identities = 89/152 (58%), Positives = 113/152 (74%), Gaps = 4/152 (2%)
Query: 8 SVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPE 67
NP+NTV D KRLIGRKF+D +Q K + D G P I V + KK++PE
Sbjct: 54 QALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPE 109
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
E+S+++L K++E AE YLG V+EAVITVPAYFND+QR+ATK+A IAGLNV+R+INEPT
Sbjct: 110 EVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPT 169
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
AAALAYGLDK + + +L+FDLGGGTFDVS+
Sbjct: 170 AAALAYGLDKKDEKGRTILVFDLGGGTFDVSL 201
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 356 bits (915), Expect = e-118
Identities = 146/261 (55%), Positives = 191/261 (73%), Gaps = 12/261 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE YLG KV+EAVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAALAYGLD
Sbjct: 122 LKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K KG + +L++DLGGGTFDVS+L I +G +F+V +T GDTHLGG+DFD R++ + +EF
Sbjct: 182 K--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGDDFDQRIIDWLVEEF 238
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG---IDFYSKITR 332
K++ D+ + A++RL+ A E+AK LSS TE + I A G ++ +TR
Sbjct: 239 KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEM--TLTR 296
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
A+FEEL DL +T+ PV++AL DAKL I +V+LVGGS RIP +Q+++++ F GK
Sbjct: 297 AKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEP 355
Query: 393 NLSINPDEAVAYGAAVQAAIL 413
N +NPDE VA GAA+Q +L
Sbjct: 356 NKGVNPDEVVAIGAAIQGGVL 376
Score = 224 bits (574), Expect = 2e-67
Identities = 93/156 (59%), Positives = 120/156 (76%), Gaps = 6/156 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+F KR +GRKF++ + + + + VV +GG K++++ G K + P+E
Sbjct: 58 AVTNPENTIFSIKRFMGRKFDEVEEERKVPYKV--VVDEGGNYKVEIDSNG--KDYTPQE 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+M+L K++E AE YLG KV+EAVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTA
Sbjct: 114 ISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AALAYGLDK KG + +L++DLGGGTFDVS+ EI +
Sbjct: 174 AALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGD 207
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 327 bits (840), Expect = e-106
Identities = 145/259 (55%), Positives = 186/259 (71%), Gaps = 8/259 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+E AE YLG V AVITVPAYFNDSQRQATKDAG IAGLNVLR+INEPTAAALAYGLD
Sbjct: 123 MKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K K +K + ++DLGGGTFD+S+L I +G +F+VKST GDT LGGEDFDN L+ EF
Sbjct: 183 K--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGGEDFDNALLRHLVKEF 239
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSS--TEASLE-IDALHEG-IDFYSKITRAR 334
K++ D+ + A++RLR A E+AK LSSS T+ +L I A G K+TRA+
Sbjct: 240 KKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAK 299
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FE L DL ++T+ P ++AL DA + K I +V+LVGG R+PK+Q+ +++ F GK +
Sbjct: 300 FESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GKEPSK 358
Query: 395 SINPDEAVAYGAAVQAAIL 413
+NPDEAVA GAA+Q +L
Sbjct: 359 GVNPDEAVAIGAAIQGGVL 377
Score = 219 bits (559), Expect = 4e-65
Identities = 95/155 (61%), Positives = 120/155 (77%), Gaps = 9/155 (5%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV--SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT++ KRLIGR+F+D ++Q+DIK+ P+ +V S+G VE G KK++P +I
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNG---DAWVEAHG--KKYSPSQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+ VL KM+E AE YLG V AVITVPAYFNDSQRQATKDAG IAGLNVLR+INEPTAA
Sbjct: 116 GAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
ALAYGLDK K +K + ++DLGGGTFD+S+ EI +
Sbjct: 176 ALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQK 208
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 307 bits (787), Expect = 8e-99
Identities = 142/255 (55%), Positives = 189/255 (74%), Gaps = 3/255 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ AE YLG +V EAVITVPAYFNDSQRQATKDAG++AGL VLRIINEPTAAALAYG+D
Sbjct: 122 LKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGID 181
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K K KN+ ++DLGGGTFD+S+L I++G +F+VK+T GDT LGGEDFDN +V + EF
Sbjct: 182 KR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRK+K D+ N +A++R++ A E+AK LSSS E+ +E+ L ITR FE+L
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQL 299
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+ ++T+ P ++ L DA L K I +V+LVGG R+P IQ ++Q+ F GK + S+NP
Sbjct: 300 RKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKKPSKSVNP 358
Query: 399 DEAVAYGAAVQAAIL 413
DEAVA GAA+Q +IL
Sbjct: 359 DEAVALGAAIQGSIL 373
Score = 193 bits (493), Expect = 9e-56
Identities = 89/154 (57%), Positives = 115/154 (74%), Gaps = 6/154 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEE 68
A++P+NT F KRLIGR+F+D ++Q +K + +V G I G KK++P +
Sbjct: 58 ALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYT--NG--KKYSPSQ 113
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
I+S VL K+++ AE YLG +V EAVITVPAYFNDSQRQATKDAG++AGL VLRIINEPTA
Sbjct: 114 IASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTA 173
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
AALAYG+DK K KN+ ++DLGGGTFD+S+ I
Sbjct: 174 AALAYGIDKR-KENKNIAVYDLGGGTFDISILNI 206
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 305 bits (784), Expect = 9e-99
Identities = 128/276 (46%), Positives = 171/276 (61%), Gaps = 21/276 (7%)
Query: 147 IFDLGGGTFDV---------SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIA 197
+ LG F S++E AE YLG V+EAVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 198 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAG 257
GL V R+INEPTAAALAYGL E L+FDLGGGTFDVSVL + +G + +V+++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 258 DTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEASL 315
D +LGGEDF L + F +KH + L + + RL A ERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEM 246
Query: 316 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIR 375
+ EG + +TR FEE+C L + P+ERAL DA+L I +++LVGG+ R
Sbjct: 247 SVR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATR 304
Query: 376 IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 411
+P ++K++ F G+ + +NPDE VA GAA+QA
Sbjct: 305 MPVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 173 bits (440), Expect = 1e-48
Identities = 71/125 (56%), Positives = 87/125 (69%), Gaps = 12/125 (9%)
Query: 56 EYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIA 115
+Y+ ++F EE+SS+VL ++E AE YLG V+EAVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 116 GLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMRE----IAEV------ 165
GL V R+INEPTAAALAYGL E L+FDLGGGTFDVS+ E + EV
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGD 192
Query: 166 -YLGG 169
YLGG
Sbjct: 193 NYLGG 197
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 290 bits (744), Expect = 4e-92
Identities = 129/260 (49%), Positives = 173/260 (66%), Gaps = 6/260 (2%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++EIAE L GKV++ VI+VP+YF D+QR+A DA IAGLN LR++NE TA ALAYG+
Sbjct: 124 LKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIY 183
Query: 219 KN--LKGEK--NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
K + EK NV D+G + VS++A ++G L +V STA D +LGG DFD L F
Sbjct: 184 KTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFDRNLGGRDFDEALFEHF 242
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
A EFK K+K D+L+N +A RL ACE+ K+ LS++TEA L I+ L E D KI R
Sbjct: 243 AKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREE 302
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEELC L + P+E+AL +A L K IH V +VGGS RIP +++++ F GK L+
Sbjct: 303 FEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELST 361
Query: 395 SINPDEAVAYGAAVQAAILS 414
++N DEAVA G A+Q A+LS
Sbjct: 362 TLNADEAVARGCALQCAMLS 381
Score = 185 bits (471), Expect = 2e-52
Identities = 79/153 (51%), Positives = 106/153 (69%), Gaps = 5/153 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPF-TVVSDGGKPKIQVEYKGEIKKFAPEEI 69
N KNTV + KRLIGRKF+D ++Q+++K PF V GK I+V Y GE K F+PE++
Sbjct: 57 SNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQV 116
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+M+LTK++EIAE L GKV++ VI+VP+YF D+QR+A DA IAGLN LR++NE TA
Sbjct: 117 LAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTAT 176
Query: 130 ALAYGLDKN--LKGEK--NVLIFDLGGGTFDVS 158
ALAYG+ K + EK NV D+G + VS
Sbjct: 177 ALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVS 209
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 288 bits (739), Expect = 8e-92
Identities = 129/281 (45%), Positives = 169/281 (60%), Gaps = 23/281 (8%)
Query: 139 LKGEKNVLIFDLGGGT---FDVS------MREIAEVYLGGKVSEAVITVPAYFNDSQRQA 189
+++F GT +VS ++E AE LGG++ AVITVPAYF+D+QRQA
Sbjct: 88 EGKNGGIILFHTQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQA 147
Query: 190 TKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL 249
TKDA +AGLNVLR++NEPTAAALAYGLDK K E ++DLGGGTFDVS+L + +G +
Sbjct: 148 TKDAARLAGLNVLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-V 204
Query: 250 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS 309
F+V +T GD+ LGG+DFD L +K+ L + L +AK LS
Sbjct: 205 FEVLATGGDSALGGDDFDQLLAEL----LLKKYGLKSLISDEDQAELLLIARKAKEALSG 260
Query: 310 STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVL 369
+ E +E+ G DF ITR FE+L L ++TL ++AL DA L I V+L
Sbjct: 261 AEE--VEVR----GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVIL 314
Query: 370 VGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 410
VGGS RIP +Q+ + FF K L INPDE VA GAA+QA
Sbjct: 315 VGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
Score = 176 bits (448), Expect = 1e-49
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 8/146 (5%)
Query: 13 PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 72
PKNT+ KRL+G+ ED I++ + P +GG + P E+S+
Sbjct: 59 PKNTISSVKRLMGKSIED--IKKSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAE 112
Query: 73 VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALA 132
+L ++E AE LGG++ AVITVPAYF+D+QRQATKDA +AGLNVLR++NEPTAAALA
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALA 172
Query: 133 YGLDKNLKGEKNVLIFDLGGGTFDVS 158
YGLDK K E ++DLGGGTFDVS
Sbjct: 173 YGLDK--KKEGIYAVYDLGGGTFDVS 196
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 289 bits (740), Expect = 3e-89
Identities = 168/440 (38%), Positives = 243/440 (55%), Gaps = 31/440 (7%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
AE L +++AVITVPA+FND+ R A IAG VLR+I EPTAAA AYGL+KN K
Sbjct: 133 AEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQK 192
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
G L++DLGGGTFDVS+L I EG +FQV +T GD LGG D D + + ++F +
Sbjct: 193 G--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPN 249
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
D L ++AK TL+ + S D + I + E+L + L
Sbjct: 250 SIDTL----------QLAKKAKETLTY--KDSFNNDNIS--------INKQTLEQLILPL 289
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
+T+ + L A I V+LVGG+ RIP I+ L F L+ I+PD+AV
Sbjct: 290 VERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAV 346
Query: 403 AYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 462
+GAA+QA L + + LL+DV PLSLG+E GG++ KI+ RN+ IP + FT
Sbjct: 347 VWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFT 402
Query: 463 TYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVS 522
TY+DNQ + + +GER M D L F L G+PP G + EVTF +DA+GIL+VS
Sbjct: 403 TYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVS 462
Query: 523 AKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAV 582
A + + + I ++ + G + K +ID ML A K D R A + E+ F +
Sbjct: 463 AYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNI 521
Query: 583 KQAAEDSGSKLSDADKTSVS 602
++A + + LS+++ + ++
Sbjct: 522 ERAIAELTTLLSESEISIIN 541
Score = 112 bits (281), Expect = 8e-26
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 62 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLR 121
K+ EI++ + ++ AE L +++AVITVPA+FND+ R A IAG VLR
Sbjct: 114 KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 122 IINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
+I EPTAAA AYGL+KN KG L++DLGGGTFDVS+ I E
Sbjct: 174 LIAEPTAAAYAYGLNKNQKG--CYLVYDLGGGTFDVSILNIQE 214
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 265 bits (678), Expect = 1e-82
Identities = 118/254 (46%), Positives = 171/254 (67%), Gaps = 2/254 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIA+ LG + VITVP YF++ Q+ A ++A AG NVLRII+EP+AAALAYG+
Sbjct: 123 MKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIG 182
Query: 219 KNLKGEK-NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADE 277
++ K VL++ LGG + DV++L ++ G +++V +T+ D +LGGE F L + A+E
Sbjct: 183 QDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 278 FKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 337
FKRK K+D+ N RA+ +L A E AK+ LS+ A+ +++L+EGIDF ++RARFE
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFES 301
Query: 338 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSIN 397
LC LF + L P+E+ L A L K I+ VVL GGS RIPK+Q++++D F + SI+
Sbjct: 302 LCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSIS 361
Query: 398 PDEAVAYGAAVQAA 411
PDE +A GAA QA
Sbjct: 362 PDEVIAIGAAKQAG 375
Score = 139 bits (353), Expect = 3e-36
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 71
N NT+ K+++GR + D Q++ ++ G+PK ++ + + K +P+E++
Sbjct: 58 NAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAK 117
Query: 72 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAL 131
++ KM+EIA+ LG + VITVP YF++ Q+ A ++A AG NVLRII+EP+AAAL
Sbjct: 118 LIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAAL 177
Query: 132 AYGLDKNLKGEK-NVLIFDLGGGTFDVSMREI 162
AYG+ ++ K VL++ LGG + DV++ +
Sbjct: 178 AYGIGQDSPTGKSYVLVYRLGGTSTDVTILRV 209
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 247 bits (634), Expect = 6e-76
Identities = 111/267 (41%), Positives = 155/267 (58%), Gaps = 14/267 (5%)
Query: 159 MREIAEVYLGG-KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
+++AE + V + VITVP YF +QRQA DA +AGLNVL ++N+ TAAAL Y L
Sbjct: 122 AKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYAL 181
Query: 218 DKNLKGEK--NVLIFDLGGGTFDVSVLAI---------DEGSLFQVKSTAGDTHLGGEDF 266
D+ + K VL +D+G G+ +V+ +V D LGG +F
Sbjct: 182 DRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREF 241
Query: 267 DNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI 324
D RL A EF+ KHK D+ N RA+ +L RAK LS+++EA + I++L++ I
Sbjct: 242 DLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDI 301
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 384
DF +KITRA FEELC DLF + +AP+++AL A L I V L+GG+ R+PK+Q+ L
Sbjct: 302 DFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELS 361
Query: 385 DFFNGKSLNLSINPDEAVAYGAAVQAA 411
+ K L +N DEA A GAA AA
Sbjct: 362 EAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 116 bits (294), Expect = 3e-28
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPK-IQVEYKGEIKKFAPEE 68
A P+ K L+G+ +D + P + + + + ++ EE
Sbjct: 55 ARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEE-YSVEE 113
Query: 69 ISSMVLTKMREIAEVYLGG-KVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+ +M+L +++AE + V + VITVP YF +QRQA DA +AGLNVL ++N+ T
Sbjct: 114 LVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGT 173
Query: 128 AAALAYGLDKNLKGEK--NVLIFDLGGGTFDVSMREIAEV 165
AAAL Y LD+ + K VL +D+G G+ ++ E + V
Sbjct: 174 AAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPV 213
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 238 bits (609), Expect = 4e-72
Identities = 127/295 (43%), Positives = 176/295 (59%), Gaps = 20/295 (6%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVS-----------MREIAEVYLGGKVSEAVITVPAYFNDS 185
K L T V+ +R++AE YLG V +AVI+VPA F++
Sbjct: 113 KINSRNGAFFFSVLTNETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEK 172
Query: 186 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAID 245
QR AT A ++AGL VLR+INEPTAAALAYGL K + NVL+ DLGGGT DVS+L
Sbjct: 173 QRNATVKAANLAGLEVLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK- 230
Query: 246 EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAK- 304
+G +F ++ AG+ LGG+DF+ RL+ + + K+ K + N ++RLR A E AK
Sbjct: 231 QGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGK-VPDNKEDIQRLRQAVEAAKI 289
Query: 305 -RTLSSSTEASLEIDALHEG---IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 360
TL ST SL + L EG + F ++TR FE L DLF++ L P+E L + LD
Sbjct: 290 NLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLD 349
Query: 361 KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415
K + ++VLVGGS RIP+I++++ FF GK N S++P+ AV G A+QA I+ G
Sbjct: 350 KEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGG 403
Score = 166 bits (421), Expect = 3e-45
Identities = 72/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEIS 70
NP+NT++DAKR IG+ F ++++ + + F V + E K PEEI
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
S ++ K+R++AE YLG V +AVI+VPA F++ QR AT A ++AGL VLR+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
LAYGL K + NVL+ DLGGGT DVS+
Sbjct: 200 LAYGLHKK-QDVFNVLVVDLGGGTLDVSL 227
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 228 bits (583), Expect = 1e-68
Identities = 110/264 (41%), Positives = 157/264 (59%), Gaps = 11/264 (4%)
Query: 158 SMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL 217
++E AE +LG KV+ AV++VP +F+D Q +A A AGL VL++I EP AA LAY
Sbjct: 124 RLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLAYDA 183
Query: 218 DKN---LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
+ ++NV++ D GG DVSV+A+ G L+ + +TA D LGG+ D+ LV F
Sbjct: 184 GEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHDPGLGGDTLDDALVKHF 242
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
A EF +K K D N RA+ +LR E K+TLS+ST A+ +++L EGIDF+S I R R
Sbjct: 243 AKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLR 302
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK---- 390
FE L +FRQ A V A+ A LD I +V+LVGG+ PK+ L F
Sbjct: 303 FELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTIT 362
Query: 391 ---SLNLSINPDEAVAYGAAVQAA 411
+++ +++P E VA G A+QA+
Sbjct: 363 APITVSKALDPSELVARGCAIQAS 386
Score = 111 bits (280), Expect = 1e-26
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 14/178 (7%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIK--HWPFTVVSDGGKPKIQVEYKGEIKKFAPEEI 69
N KNT+ + + L+G+ F + + P V+ GG + + E + E+
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEV 117
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
+ L +++E AE +LG KV+ AV++VP +F+D Q +A A AGL VL++I EP AA
Sbjct: 118 TVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAA 177
Query: 130 ALAYGLDKN---LKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFND 184
LAY + ++NV++ D GG DVS+ IA V + T+ A +D
Sbjct: 178 LLAYDAGEPTEDEALDRNVVVADFGGTRTDVSV--IA-------VRGGLYTILATAHD 226
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 201 bits (512), Expect = 2e-58
Identities = 107/262 (40%), Positives = 161/262 (61%), Gaps = 8/262 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE L V + V++VP ++ D++R++ DA IAGLN LR++NE TA ALAYG+
Sbjct: 124 LKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIY 183
Query: 219 KN-----LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K + +NV+ D+G + VSV A ++G L +V +TA DT LGG FD LV +
Sbjct: 184 KQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAFDTTLGGRKFDEVLVNY 242
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDFYSKITR 332
F +EF +K+K DI + RA+ RL CE+ K+ +S+ +++ L I+ ID + R
Sbjct: 243 FCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTMNR 302
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
+F E+C DL + P+ L AKL K I+ V +VGG+ RIP +++ + FF GK +
Sbjct: 303 GKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GKEV 361
Query: 393 NLSINPDEAVAYGAAVQAAILS 414
+ ++N DEAVA G A+Q AILS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
Score = 105 bits (264), Expect = 2e-24
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
V N KNTV KR GR F D +Q + + +V G I+V Y E + F E
Sbjct: 55 VISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTE 114
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
++++M+LTK++E AE L V + V++VP ++ D++R++ DA IAGLN LR++NE T
Sbjct: 115 QVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETT 174
Query: 128 AAALAYGLDKN-----LKGEKNVLIFDLGGGTFDVSM 159
A ALAYG+ K + +NV+ D+G + VS+
Sbjct: 175 AVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSV 211
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 200 bits (510), Expect = 3e-58
Identities = 93/257 (36%), Positives = 148/257 (57%), Gaps = 7/257 (2%)
Query: 160 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGL-- 217
++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA ++YG+
Sbjct: 123 KDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFK 182
Query: 218 DKNLKGE---KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFF 274
+GE + V D+G ++ S++A +G L +V TA D H GG DFD + F
Sbjct: 183 TDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTACDKHFGGRDFDLAITEHF 241
Query: 275 ADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRAR 334
ADEFK K+K DI N +A R+ TA E+ K+ LS++T A ++++ +D S+++R
Sbjct: 242 ADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREE 301
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
EEL L + PV +AL AKL + V ++GG+ RIP +++ + + F GK L+
Sbjct: 302 LEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLST 360
Query: 395 SINPDEAVAYGAAVQAA 411
++N DEA+A GAA A
Sbjct: 361 TLNQDEAIAKGAAFICA 377
Score = 99.7 bits (248), Expect = 1e-22
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKH-WPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
N KNTV + KR+IG + +++ KH V D K +V + GE F+ +++
Sbjct: 56 NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 115
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+M + K+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA
Sbjct: 116 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAG 175
Query: 131 LAYGL--DKNLKGE---KNVLIFDLGGGTFDVSM 159
++YG+ +GE + V D+G ++ S+
Sbjct: 176 VSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSI 209
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 198 bits (505), Expect = 2e-57
Identities = 106/262 (40%), Positives = 157/262 (59%), Gaps = 8/262 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++E AE L V++ VI+VP++F D++R++ DA I GLN LR++N+ TA AL YG+
Sbjct: 124 LKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIY 183
Query: 219 K-NLKGE----KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K +L + V+ D+G F VS A ++G L +V TA D LGG++FD +LV
Sbjct: 184 KQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTAFDPFLGGKNFDEKLVEH 242
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDFYSKITR 332
F EFK K+K D + RA+ RL CE+ K+ +SS ST+ L I+ D K+ R
Sbjct: 243 FCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNR 302
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
++FEELC DL ++ P+ L L + V +VGG+ RIP +++ + FF GK +
Sbjct: 303 SQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDV 361
Query: 393 NLSINPDEAVAYGAAVQAAILS 414
+ ++N DEAVA G A+Q AILS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
Score = 118 bits (296), Expect = 1e-28
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 12 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 70
+ NTV + KR GR F D +Q++ ++ + +V G ++V Y GE F+ E+I+
Sbjct: 58 HANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQIT 117
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+M+LTK++E AE L V++ VI+VP++F D++R++ DA I GLN LR++N+ TA A
Sbjct: 118 AMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVA 177
Query: 131 LAYGLDK-NLKGE----KNVLIFDLGGGTFDVS 158
L YG+ K +L + V+ D+G F VS
Sbjct: 178 LNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVS 210
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 190 bits (483), Expect = 2e-54
Identities = 102/268 (38%), Positives = 166/268 (61%), Gaps = 8/268 (2%)
Query: 153 GTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 212
G ++E +E L V++ VI++P++F D++R++ A +AGLN LR++NE TA A
Sbjct: 118 GMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVA 177
Query: 213 LAYGLDKN-----LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFD 267
LAYG+ K + +NV+ D+G + VSV A ++G L +V +T D +LGG +FD
Sbjct: 178 LAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-KVLATTFDPYLGGRNFD 236
Query: 268 NRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS-STEASLEIDALHEGIDF 326
LV +F DEFK K+K ++ N+RA+ RL CE+ K+ +S+ +++ L I+ +D
Sbjct: 237 EALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDV 296
Query: 327 YSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDF 386
SK+ RA+FE+LC L + P++ + A L + I+ + +VGG+ RIP +++ + F
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 387 FNGKSLNLSINPDEAVAYGAAVQAAILS 414
F K ++ ++N DEAVA G A+Q AILS
Sbjct: 357 FL-KDISTTLNADEAVARGCALQCAILS 383
Score = 103 bits (258), Expect = 8e-24
Identities = 65/201 (32%), Positives = 111/201 (55%), Gaps = 21/201 (10%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
+ N +NT+ K+L GR F+D +Q + P+ + G ++V Y E + FA E
Sbjct: 55 IVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE 114
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+++ M+L K++E +E L V++ VI++P++F D++R++ A +AGLN LR++NE T
Sbjct: 115 QVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETT 174
Query: 128 AAALAYGLDKN-----LKGEKNVLIFDLGGGTFDVS--------MREIA---EVYLGGK- 170
A ALAYG+ K + +NV+ D+G + VS ++ +A + YLGG+
Sbjct: 175 AVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRN 234
Query: 171 VSEAVITVPAYFNDSQRQATK 191
EA++ YF D + K
Sbjct: 235 FDEALVD---YFCDEFKTKYK 252
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 89.1 bits (222), Expect = 6e-19
Identities = 75/295 (25%), Positives = 114/295 (38%), Gaps = 72/295 (24%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQ----RQATKDAGSI---AGLNVLRIINEPTAA 211
+++ AE LG ++ VI P +F QA + AG + EP AA
Sbjct: 104 LKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEPIAA 163
Query: 212 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDT------HLGGED 265
AL Y + L E+ VL+ D+GGGT D S++ + S D +GG D
Sbjct: 164 ALDYE--QRLTREELVLVVDIGGGTSDFSLVRL-GPSRRGRADRRADILAHSGVRIGGTD 220
Query: 266 FDNRLV-------------------------TFFADEFKRKHK-------------KDIL 287
FD RL ++FAD HK +++
Sbjct: 221 FDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFAD-LATWHKINFLYTPKTLRELRELA 279
Query: 288 ANT---RAVRRLRT------------ACERAKRTLSSSTEASLEIDALHEGIDFYSKITR 332
+ + RL T A E AK LSS E +++D + G++ + +TR
Sbjct: 280 RDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFVEVGLE--APVTR 337
Query: 333 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 387
A FE + A V+ AL A + +I V L GGS +P +++ F
Sbjct: 338 AEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
Score = 56.8 bits (138), Expect = 2e-08
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQ----RQATKDAGSI---AGLNV 119
E++ + L ++++ AE LG ++ VI P +F QA + AG
Sbjct: 94 EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKD 153
Query: 120 LRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ EP AAAL Y + L E+ VL+ D+GGGT D S+
Sbjct: 154 VEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSL 191
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 81.6 bits (202), Expect = 2e-16
Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%)
Query: 155 FDVSMREIAEVYLGGKVSEA----VITVPAYFNDSQRQATKDAGSIAGLNV-------LR 203
++ ++ E+ + Y G+ + V+TVPA ++D+ +QA ++A AGL L
Sbjct: 120 YEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGPDRLL 179
Query: 204 IINEPTAAALA---YGL-DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVK-STAGD 258
I+ EP AAAL L NLK L+ D GGGT D++V + ++K AG
Sbjct: 180 IVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGS 239
Query: 259 THLGGEDF-DNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI 317
L G F D + + + L E KR+ + + +
Sbjct: 240 GGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDNDTNIV 299
Query: 318 DALHEGIDFYSKITRARFEELCM------DLFRQTLAPVERALNDAKLDKGSIHD----V 367
+ R EL + LF + + + + +L++ D +
Sbjct: 300 LPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYI 358
Query: 368 VLVGGSIRIPKIQKMLQDFFNGKSLNLSI--NPDEAVAYGAA 407
LVGG P ++ L++ F+ + + + +P AV GA
Sbjct: 359 FLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVRGAV 400
Score = 60.8 bits (148), Expect = 9e-10
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 77 MREIAEVYLGGKVSEA----VITVPAYFNDSQRQATKDAGSIAGLNV-------LRIINE 125
+ E+ + Y G+ + V+TVPA ++D+ +QA ++A AGL L I+ E
Sbjct: 124 LEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGPDRLLIVLE 183
Query: 126 PTAAALA---YGL-DKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAV 175
P AAAL L NLK L+ D GGGT D+++ E+ V ++ E
Sbjct: 184 PEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVE-PLRLKELA 236
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 60.9 bits (149), Expect = 6e-10
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 45/252 (17%)
Query: 172 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIF 230
VI VP+ + +R+A DA AG + +I EP AAA+ GLD KG ++
Sbjct: 91 PRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVV 147
Query: 231 DLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANT 290
D+GGGT +++V+++ G + V S + +GG+DFD ++ + + K ++L
Sbjct: 148 DIGGGTTEIAVISL--GGI--VVSKS--IRVGGDDFDEAIIRYV------RRKYNLLIGE 195
Query: 291 RAVRRLRTACERAKRTLSS----STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQT 346
RTA E K + S E ++E+ +G D + + R E+ + R+
Sbjct: 196 ------RTA-EEIKIEIGSAYPLDEEETMEV----KGRDLVTGLPRTV--EVTSEEVREA 242
Query: 347 LA-PVERALNDAK--LDK------GSIHD--VVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
L P++ + K L+K I D +VL GG + + +++ + G + ++
Sbjct: 243 LKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVA 301
Query: 396 INPDEAVAYGAA 407
+P VA GA
Sbjct: 302 EDPLTCVAKGAG 313
Score = 44.0 bits (105), Expect = 1e-04
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 90 SEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIF 148
VI VP+ + +R+A DA AG + +I EP AAA+ GLD KG ++
Sbjct: 91 PRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVV 147
Query: 149 DLGGGTFDVSMREIAEVYLGGKV 171
D+GGGT ++++ I+ LGG V
Sbjct: 148 DIGGGTTEIAV--IS---LGGIV 165
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 50.2 bits (121), Expect = 2e-06
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 67 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN-----DSQRQAT---KDAGSIAGLN 118
E++ ++ +++ AE L +++AVI P F ++ RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 119 VLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ EP AA L + + L EK VL+ D+GGGT D SM
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSM 225
Score = 48.7 bits (117), Expect = 7e-06
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 160 REIAEVYLGGKVSEAVITVPAYFN-----DSQRQAT---KDAGSIAGLNVLRIINEPTAA 211
++ AE L +++AVI P F ++ RQA + A AG + EP AA
Sbjct: 138 KQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAA 197
Query: 212 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242
L + + L EK VL+ D+GGGT D S+L
Sbjct: 198 GLDF--EATLTEEKRVLVVDIGGGTTDCSML 226
Score = 33.3 bits (77), Expect = 0.39
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 294 RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERA 353
R +R+A E AK LS E +D + +G+ ++I++ EE + L V+ A
Sbjct: 336 RLVRSA-EEAKIALSDQAETRASLDFISDGLA--TEISQQGLEEAISQPLARILELVQLA 392
Query: 354 LNDAKLDKGSIHDVV-LVGGSIRIPKIQKMLQ 384
L+ A DV+ L GGS R P I+ L
Sbjct: 393 LDQA----QVKPDVIYLTGGSARSPLIRAALA 420
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 48.6 bits (117), Expect = 6e-06
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 71/264 (26%)
Query: 173 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV----- 227
VI VP+ + +R+A ++A AG + +I EP AAA+ GL V
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVG 153
Query: 228 -LIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDI 286
++ D+GGGT +V+V+ SL + + + G++ D +V + +RK+
Sbjct: 154 NMVVDIGGGTTEVAVI-----SLGGI-VYSESIRVAGDEMDEAIVQY----VRRKYN--- 200
Query: 287 LANTRAVRRL----RTACERAKRTLSSST----EASLEIDALHEGIDFYSKITRARFEEL 338
L RTA E K + S+ E S+E+ G D + + + E+
Sbjct: 201 ---------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTGLPKTI--EI 244
Query: 339 CMDLFRQTLAP--------VERALNDAK-------LDKGSIHDVVLVGGSIRIPKIQKML 383
+ R+ LA V+ L +D+G +VL GG + + K+L
Sbjct: 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRG----IVLTGGGALLRGLDKLL 300
Query: 384 QDFFNGKSLNLSINPDEAVAYGAA 407
+ G ++++ +P VA G
Sbjct: 301 SEET-GLPVHIAEDPLTCVARGTG 323
Score = 39.0 bits (92), Expect = 0.005
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 91 EAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV----- 145
VI VP+ + +R+A ++A AG + +I EP AAA+ GL V
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVG 153
Query: 146 -LIFDLGGGTFDVSMREIAEVYLGGKVS 172
++ D+GGGT E+A + LGG V
Sbjct: 154 NMVVDIGGGT-----TEVAVISLGGIVY 176
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 47.9 bits (114), Expect = 7e-06
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ E LG + + A +P + + + AGL VL +++EPTAAA LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF-FADE 277
+ + D+GGGT +S++ ++ G TH+ N ++ A++
Sbjct: 141 -------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLEEAEQ 192
Query: 278 FKRKHKK 284
+KR HKK
Sbjct: 193 YKRGHKK 199
Score = 44.5 bits (105), Expect = 1e-04
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 103
VV DG I V++ ++ ++ ++++ E LG + + A +P
Sbjct: 62 VVRDG----IVVDFFEAVE----------IVRRLKDTLEKQLGIRFTHAATAIPPGTEQG 107
Query: 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
+ + + AGL VL +++EPTAAA LD + + D+GGGT +S+ +
Sbjct: 108 DPRISINVIESAGLEVLHVLDEPTAAADVLQLD-------DGGVVDIGGGTTGISIVKKG 160
Query: 164 EV 165
+V
Sbjct: 161 KV 162
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 46.7 bits (111), Expect = 1e-05
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ E LG +++ A +P + + + AG+ VL +++EPTAAA +
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI- 107
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF-FADE 277
KN + D+GGGT +S+L ++ G TH+ ++F A+E
Sbjct: 108 ------KNGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEE 160
Query: 278 FKRKHKKD 285
+KR HK +
Sbjct: 161 YKRGHKDE 168
Score = 45.5 bits (108), Expect = 3e-05
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 103
VV DG I V++ G + ++ ++++ E LG +++ A +P +
Sbjct: 30 VVRDG----IVVDFLG----------AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEG 75
Query: 104 QRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIA 163
+ + AG+ VL +++EPTAAA + KN + D+GGGT +S+ +
Sbjct: 76 DPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI-------KNGAVVDVGGGTTGISILKKG 128
Query: 164 EV 165
+V
Sbjct: 129 KV 130
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 44.9 bits (106), Expect = 3e-05
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 23/157 (14%)
Query: 44 VVSDGGKPKIQVEYKGEIKKFAPE---EISSMVLTKMREIAEVYLGGKVSEAVITVPAYF 100
V G+ + + + + L ++ + A L ++ IT P
Sbjct: 14 VADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGV 73
Query: 101 NDSQRQAT----------KDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDL 150
R+ A G + ++N+ AAALA GL K E VL+ DL
Sbjct: 74 PKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDL 131
Query: 151 GGGTFDVS--------MREIAEVYLGGKVSEAVITVP 179
G GT ++ + E+ + ++ + +
Sbjct: 132 GTGTTGIAIVEDGKGGVGAAGELGIAEALAAVLNLLD 168
Score = 44.1 bits (104), Expect = 5e-05
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQAT----------KDAGSIAGLNVLRIINEPTAAA 212
A L ++ IT P R+ A G + ++N+ AAA
Sbjct: 54 ALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAA 113
Query: 213 LAYGLDKNLKGEKNVLIFDLGGGTFDVSV 241
LA GL K E VL+ DLG GT +++
Sbjct: 114 LAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 46.1 bits (110), Expect = 5e-05
Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 42/225 (18%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSL--FQVKS 254
AGL V I+ EP A+ALA L ++ K E V + D+GGGT D+++ G+L V
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 255 TAGD--THLGGEDFDNRLVTFFADEFKRKHKKDI--LANTRAVRRLRTACERAKRTLSSS 310
GD T + A+ K K+ + LA+ + + R ++ S
Sbjct: 233 VGGDHVTKDIAKGLKTPFEE--AERIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRS 290
Query: 311 TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 370
S+I AR EE+ ++L V+ L + L VVL
Sbjct: 291 ---------------ELSEIIEARVEEI-LEL-------VKAELRKSGLPNHLPGGVVLT 327
Query: 371 GGSIRIPKIQKMLQDFF-----NGKSLNLSINPDEAV--AYGAAV 408
GG ++P I ++ + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
Score = 36.1 bits (84), Expect = 0.061
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 115 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKV 171
AGL V I+ EP A+ALA L ++ K E V + D+GGGT D++ +Y G +
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIA------IYKNGAL 225
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 45.3 bits (108), Expect = 6e-05
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
+I +P +++A ++A AG + +I EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
GT D++VL++ G + S + G+ FD ++ + ++K+K
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
Score = 40.3 bits (95), Expect = 0.002
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
+I +P +++A ++A AG + +I EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 153 GTFDVSMREIAEVYLGGKVSEAVITV 178
GT D IA + LGG V+ + I V
Sbjct: 157 GTTD-----IAVLSLGGIVTSSSIKV 177
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 43.3 bits (103), Expect = 2e-04
Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 64/321 (19%)
Query: 122 IINEPTAAA--------LAYGLD-KNLKG---EKNVLIFDLGGGTF-DVSMREIAEVYLG 168
++NEP+ A LA G + K + G V + L G D + E Y
Sbjct: 23 VLNEPSVVAINTKTKKVLAVGNEAKKMLGRTPGNIVAVRPLKDGVIADFEVTEAMLKYFI 82
Query: 169 GKVSEA--------VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220
KV VI VP+ + +R+A K+A AG + +I EP AAA+ GL
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 221 LKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKR 280
++ ++ D+GGGT +V+V+++ G + KS + G++ D ++ + ++
Sbjct: 141 VEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEAIIKY----IRK 190
Query: 281 KHKKDILANTRAVRRLRTACERAKRTLSS--STEASLEIDALHEGIDFYS------KITR 332
K+ I RTA ER K + S TE +++ G D + +I+
Sbjct: 191 KYNLLI--------GERTA-ERIKIEIGSAYPTEEEEKMEI--RGRDLVTGLPKTIEISS 239
Query: 333 ARFEELCMDLFRQTLAPVERALNDAK-------LDKGSIHDVVLVGGSIRIPKIQKMLQD 385
E + + V+ L +D+G +VL GG + + K+L D
Sbjct: 240 EEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRG----IVLTGGGALLRGLDKLLSD 295
Query: 386 FFNGKSLNLSINPDEAVAYGA 406
G ++++ +P VA G
Sbjct: 296 ET-GLPVHIAEDPLTCVALGT 315
Score = 38.7 bits (91), Expect = 0.008
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 92 AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLG 151
VI VP+ + +R+A K+A AG + +I EP AAA+ GL ++ ++ D+G
Sbjct: 96 VVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--PVEEPTGNMVVDIG 153
Query: 152 GGTFDVSMREIAEVYLGGKV-SEAV 175
GGT E+A + LGG V S++V
Sbjct: 154 GGT-----TEVAVISLGGIVTSKSV 173
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 42.5 bits (101), Expect = 3e-04
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 43 TVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFND 102
VV DG I V++ G + ++ +++ E LG +++ A +P ++
Sbjct: 56 DVVRDG----IVVDFIGAVT----------IVRRLKATLEEKLGRELTHAATAIPPGTSE 101
Query: 103 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREI 162
+A + AGL V +++EPTAAA G+ N + D+GGGT +S
Sbjct: 102 GDPRAIINVVESAGLEVTHVLDEPTAAAAVLGI-------DNGAVVDIGGGTTGIS---- 150
Query: 163 AEVYLGGKV 171
+ GKV
Sbjct: 151 --ILKDGKV 157
Score = 41.0 bits (97), Expect = 0.001
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++ E LG +++ A +P ++ +A + AGL V +++EPTAAA G+
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGI- 134
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTA----GDTHLG-------GEDFD 267
N + D+GGGT +S+L +G +V +A G TH+ G F+
Sbjct: 135 ------DNGAVVDIGGGTTGISIL--KDG---KVVYSADEPTGGTHMSLVLAGAYGISFE 183
Query: 268 NRLVTFFADEFKR--KHKKDILANTRAV 293
A+++KR KH K+I + V
Sbjct: 184 E------AEQYKRDPKHHKEIFPVVKPV 205
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 42.8 bits (101), Expect = 4e-04
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
VI VP+ +R+A K++ AG + +I EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 235 GTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
GT +V+V+++ G + +S +GG++FD ++ +
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINY 192
Score = 41.2 bits (97), Expect = 0.001
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
VI VP+ +R+A K++ AG + +I EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 153 GTFDVSMREIAEVYLGGKV 171
GT E+A + LGG V
Sbjct: 160 GT-----TEVAVISLGGIV 173
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 42.6 bits (100), Expect = 5e-04
Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 48/313 (15%)
Query: 122 IINEPTAAA--------LAYGLD-KNLKGE---KNVLIFDLGGGT---FDVS---MREI- 162
I+NEP+ A LA G + KN+ G+ K V + + G +D++ +++I
Sbjct: 26 ILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQIM 85
Query: 163 --AEVYLGGKVSE--AVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
A +G + V+ P+ +R+A DA G + +I EP AAA+ G D
Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GAD 143
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
+ ++ D+GGGT +V++++ G + S +GG+ D +V+F
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLDEDIVSFV---- 193
Query: 279 KRKHKKDILANTRAVRRLRTACERA---KRTLSSSTEASLEIDALHEGIDFYSKITRARF 335
+ K ++L R +++ A + + L + I SK +
Sbjct: 194 --RKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAM 251
Query: 336 EELCMDLF---RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL 392
E + + R TL L+ +D+G V+L GG + I++ L + +
Sbjct: 252 RESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGIKEWLSEEIV-VPV 306
Query: 393 NLSINPDEAVAYG 405
+++ NP E+VA G
Sbjct: 307 HVAANPLESVAIG 319
Score = 34.5 bits (79), Expect = 0.14
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
V+ P+ +R+A DA G + +I EP AAA+ G D + ++ D+GG
Sbjct: 102 VVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GADLPVDEPVANVVVDIGG 159
Query: 153 GTFDVSMREIAEVYLGGKVS 172
GT E+A + GG VS
Sbjct: 160 GT-----TEVAIISFGGVVS 174
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 41.9 bits (99), Expect = 9e-04
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 341 DLFRQTLAPVERALNDA-----KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
DL R L V AL D+ + I + L+GG + P ++ML D F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG-----TP 417
Query: 396 I---NPDEAVAYGAAVQAAILSG 415
+ +E A GAA+ AA G
Sbjct: 418 VDVPEGEEGPALGAAILAAWALG 440
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 41.9 bits (99), Expect = 0.001
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+DL R L+GG + P ++++ D N + +
Sbjct: 384 GLDLLRALGLKSTEIR--------------LIGGGAKSPAWRQIIADIMNAEVVVPDT-- 427
Query: 399 DEAVAYGAAVQAA-ILSGDTSSAIQDVLLVD 428
+EA A GAA+QAA L+G+ + + L D
Sbjct: 428 EEAAALGAAIQAAWCLTGEDGADVALAELCD 458
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 234
VI VP+ D +R+A K+A AG + +I EP AA A G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAA--AIGAGLPIMEPTGSMVVDIGG 162
Query: 235 GTFDVSVLA 243
GT +V+V++
Sbjct: 163 GTTEVAVIS 171
Score = 38.7 bits (91), Expect = 0.008
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGG 152
VI VP+ D +R+A K+A AG + +I EP AA A G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAA--AIGAGLPIMEPTGSMVVDIGG 162
Query: 153 GTFDVSMREIAEVYLGGKVS 172
GT E+A + LGG VS
Sbjct: 163 GT-----TEVAVISLGGIVS 177
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 37.7 bits (87), Expect = 0.020
Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 48/270 (17%)
Query: 74 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGL------NVLRIINEPT 127
L ++++ + L V+TVPA + +Q ++A +AGL L I EP
Sbjct: 125 LQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPE 184
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQR 187
AA++ + L+ + D+S R + + G S + S R
Sbjct: 185 AASIYC---RKLRLHQ----------LTDLSQRAVTNFDIDGSRS---------IDSSFR 222
Query: 188 QATKDAGSIAGLNVLRIINEPTAAALAYGLDK---NLKGEKNVLIFDLGGGTFDVSVLAI 244
QA + LR + G + ++ ++ D GGGT D++V I
Sbjct: 223 QAREQ---------LRRSRHSRTFLVESGTGELWSEMQAGDRYIVADCGGGTVDLTVHQI 273
Query: 245 DE--GSLFQV-KSTAGDTHLGGED--FDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 299
++ G+L ++ K++ G G D F+ L F ++F K A A L A
Sbjct: 274 EQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGEDFIDTFKAKRPA---AWVDLTIA 330
Query: 300 CERAKRTLSSSTEASLEIDALHEGIDFYSK 329
E KRT + +L I IDFY K
Sbjct: 331 FEARKRTAAPGRANTLNISLPFSFIDFYRK 360
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 37.0 bits (86), Expect = 0.025
Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 39/204 (19%)
Query: 203 RIINEPTAAALAYGLDKNLKGE-KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHL 261
++ E A LD+ + K VL+ D+GGGT DV V D G V+S++G L
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKP--VESSSGSLEL 199
Query: 262 GGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALH 321
G D + A E +++ D+ + + K I
Sbjct: 200 GVSDLYEAI----AKELNKEYGIDL-----SDEEIEEILRNGK------------IKNYG 238
Query: 322 EGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQK 381
+ D I A EE + + L + V+LVGG + +++
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNEL---------KEFLGLSDVDKVILVGGGAIL--LKE 286
Query: 382 MLQDFFNGKSLNLSINPDEAVAYG 405
L++ F + L +P A A G
Sbjct: 287 YLKELFPENVV-LVDDPQFANARG 309
Score = 33.5 bits (77), Expect = 0.27
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 121 RIINEPTAAALAYGLDKNLKGE-KNVLIFDLGGGTFDVSM 159
++ E A LD+ + K VL+ D+GGGT DV +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV 183
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 36.2 bits (85), Expect = 0.045
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIFDLG 233
VI VP+ + +R+A +++ AG + +I EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 234 GGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
GGT +V+V+++ G + KS +GG+ FD ++ + +R +
Sbjct: 157 GGTTEVAVISL--GGIVYSKS----VRVGGDKFDEAIINY----VRRNY 195
Score = 33.5 bits (78), Expect = 0.35
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD-KNLKGEKNVLIFDLG 151
VI VP+ + +R+A +++ AG + +I EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 152 GGTFDVSMREIAEVYLGGKV-SEAV 175
GGT E+A + LGG V S++V
Sbjct: 157 GGT-----TEVAVISLGGIVYSKSV 176
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 35.0 bits (81), Expect = 0.13
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 330 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389
+ RA E + L L + L + V +VGG R P ++L D
Sbjct: 375 LARAVLEGVAFAL-ADGLEAL-EELGGKPPSR-----VRVVGGGARSPLWLQILADALG- 426
Query: 390 KSLNLSINPD-EAVAYGAAVQAAILSGDTSSAIQDVL 425
L + + EA A G A AA G + + L
Sbjct: 427 --LPVVVPEVEEAGALGGAALAAAALGGIYDSAEGAL 461
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 34.3 bits (79), Expect = 0.23
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 361 KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSA 420
+ + L+GG + +++L D G + L N + A + GAA+ AA+ +GD +
Sbjct: 390 GTAPQRIKLIGGGAKSELWRQILADVL-GVPVELPANAEGA-SVGAALLAAVGAGDFADL 447
Query: 421 IQDVLLVDVAPLS 433
+ V P+
Sbjct: 448 NEAARTVRQLPVI 460
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 31.5 bits (72), Expect = 0.80
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 330 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389
+ RA E L + L RQ L AL + I GG R P + ++L D
Sbjct: 119 LYRALLEGLALAL-RQIL----EALAELGAPIDRII---ASGGGSRNPLLLQLLADALG- 169
Query: 390 KSLNLSIN-PDEAVAYGAAVQAAI 412
+ + EA A GAA+ AA+
Sbjct: 170 --RPVEVPETAEATALGAALLAAV 191
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 31.9 bits (73), Expect = 0.96
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 221 LKGEKNVLIFDLGGGTFDVSVLA 243
L G KN ++ D+GG + DVS++
Sbjct: 73 LAGLKNAIVVDMGGTSTDVSLII 95
Score = 30.3 bits (69), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 139 LKGEKNVLIFDLGGGTFDVSM 159
L G KN ++ D+GG + DVS+
Sbjct: 73 LAGLKNAIVVDMGGTSTDVSL 93
>gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this
protein family are the ThiH protein of thiamine
biosynthesis, a homolog of the BioB protein of biotin
biosynthesis. Genes for the this protein generally are
found in operons with other thiamin biosynthesis genes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 366
Score = 30.8 bits (70), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 360
F +I +EE+ D++ T A VERALN L
Sbjct: 1 TFKDEIEDILWEEVSYDIYSFTAADVERALNKRHLS 36
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 30.1 bits (68), Expect = 3.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 214 AYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLG 262
+ + K+L +++LI DLGG T DV+ + G L + GD+ +G
Sbjct: 153 GFSVLKDLDSFESLLIVDLGGTTLDVAHV---RGQLEGISKIHGDSRIG 198
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 29.9 bits (68), Expect = 3.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKN--VLIFDLGGGTFDVSV 241
GL V I+ A+A+A L ++ EK V + D+GGGT D++V
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAV 212
Score = 29.5 bits (67), Expect = 5.1
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 115 AGLNVLRIINEPTAAALAYGLDKNLKGEKN--VLIFDLGGGTFDVSMREIAEVYLGGK 170
GL V I+ A+A+A L ++ EK V + D+GGGT D++ VY GG
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIA------VYTGGS 217
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 30.3 bits (69), Expect = 4.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 352 RALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA-YGA-AV 408
+AL D L K ++ G + + +KM KS ++P+EAV YGA V
Sbjct: 549 KALFDEGLVPKDEPFKKLITQGMVLGEEGEKM------SKSKGNVVDPEEAVEKYGADTV 602
Query: 409 QAAILS 414
+ I+
Sbjct: 603 RLYIMF 608
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 30.1 bits (68), Expect = 4.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 527 STGKAERITIQNDKGRLSKD--DIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAV 582
GKA++ I++ K L D + LAE +K D K+ E A + FAV
Sbjct: 226 KEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAV 283
>gnl|CDD|218286 pfam04840, Vps16_C, Vps16, C-terminal region. This protein forms
part of the Class C vacuolar protein sorting (Vps)
complex. Vps16 is essential for vacuolar protein
sorting, which is essential for viability in plants, but
not yeast. The Class C Vps complex is required for
SNARE-mediated membrane fusion at the lysosome-like
yeast vacuole. It is thought to play essential roles in
membrane docking and fusion at the Golgi-to-endosome and
endosome-to-vacuole stages of transport. The role of
VPS16 in this complex is not known.
Length = 319
Score = 29.7 bits (67), Expect = 4.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVE---------RALNDAKLDKGSIHDVVLVGGSIR 375
DFY+ F++L F+Q E +A + K S + L+ ++
Sbjct: 102 DFYN--QDDDFQDLAHFHFQQAETEKEQEGRHSALPQAKDAYSQVKNSELEEKLIEDQLK 159
Query: 376 IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQ 422
+ ++Q+ L+D F G +LS++ V IL G T A Q
Sbjct: 160 LLRLQETLEDRFAGSFTDLSVH--------DTVSKLILIGQTKRAEQ 198
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 27.6 bits (62), Expect = 5.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 529 GKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
KAER + +L+K + DR+ E +K KA+++ + R K KL+
Sbjct: 22 NKAERQARREA--KLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLK 67
>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
the periplasmic membrane in yeast. This group contains
members identified in targeting of yeast membrane
proteins ATPase. AST1 is a cytoplasmic protein
associated with the periplasmic membrane in yeast,
identified as a multicopy suppressor of pma1 mutants
which cause temperature sensitive growth arrest due to
the inability of ATPase to target to the cell surface.
This family is homologous to the medium chain family of
dehydrogenases and reductases. Medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 352
Score = 29.5 bits (67), Expect = 5.3
Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 16/113 (14%)
Query: 127 TAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDSQ 186
TA + L + L + VL+ LGG T V I + V T S
Sbjct: 137 TAYQILEDLGQKLGPDSKVLV--LGGST-SVGRFAIQLAKNHYNIGTVVGTC------SS 187
Query: 187 RQATKDAGSIAGLNVLRIIN---EPTAAALAYGLDKNLKGEKNVLIFDLGGGT 236
R A L I+ L L+ K LI D GG
Sbjct: 188 RSAEL----NKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGY 236
>gnl|CDD|236425 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 371
Score = 29.4 bits (67), Expect = 6.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 360
FY + + +++L + + +T A VERALN +L
Sbjct: 2 SFYDEWRQLDWDDLRLRINSKTAADVERALNKDRLS 37
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 29.5 bits (67), Expect = 6.7
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 274 FADEFKRKHKKDILANTRAVRRLRTAC------ERAKRTLSSSTEASL-------EIDAL 320
F + + R R +R ERA + + SS EA+ E+ A
Sbjct: 819 FPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAA 878
Query: 321 HEGIDF 326
EG+DF
Sbjct: 879 LEGLDF 884
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 28.9 bits (65), Expect = 8.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAF 580
LS+++I+ +L A + + + + K K+ + F
Sbjct: 9 LSREEIELLLETARELEQVLNGKEPLKLLKGKILANLF 46
>gnl|CDD|177977 PLN02343, PLN02343, allene oxide cyclase.
Length = 229
Score = 28.6 bits (64), Expect = 8.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 458 QQTFTTYSDNQNAVT--IQVFEGERAMTKDNN------LLGTFNLTGIPPAPR 502
Q + TY D A+T +FEG K + L TF L GIP P
Sbjct: 144 QGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIVFPFKLFYTFYLKGIPDLPE 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,186,307
Number of extensions: 3346470
Number of successful extensions: 3072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 145
Length of query: 655
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 552
Effective length of database: 6,369,140
Effective search space: 3515765280
Effective search space used: 3515765280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.8 bits)