RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3270
(655 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 896 bits (2318), Expect = 0.0
Identities = 337/429 (78%), Positives = 376/429 (87%), Gaps = 1/429 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 127 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 186
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + E+NVLIFDLGGGTFDVS+L I G +F+VKSTAGDTHLGGEDFDNR+V F EF
Sbjct: 187 KKVGAERNVLIFDLGGGTFDVSILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEF 245
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
KRKHKKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL
Sbjct: 246 KRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEEL 305
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
DLFR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+LQDFFNGK LN SINP
Sbjct: 306 NADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 365
Query: 399 DEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQ 458
DEAVAYGAAVQAAILSGD S +QD+LL+DV PLSLGIETAGGVMT +++RN+ IP KQ
Sbjct: 366 DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQT 425
Query: 459 QTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGI 518
QTFTTYSDNQ V IQV+EGERAMTKDNNLLG F LTGIPPAPRGVP+IEVTFD+DANGI
Sbjct: 426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI 485
Query: 519 LNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 578
LNVSA D STGK +ITI NDKGRLSK+DI+RM+ EAEKYKAED+KQR++V++KN LESY
Sbjct: 486 LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESY 545
Query: 579 AFAVKQAAE 587
AF +K E
Sbjct: 546 AFNMKATVE 554
Score = 345 bits (887), Expect = e-111
Identities = 121/156 (77%), Positives = 137/156 (87%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGR+F+D +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE
Sbjct: 59 VAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEE 118
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+SSMVLTKM+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 119 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 178
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK + E+NVLIFDLGGGTFDVS+ IA
Sbjct: 179 AAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAA 214
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 824 bits (2131), Expect = 0.0
Identities = 135/514 (26%), Positives = 235/514 (45%), Gaps = 30/514 (5%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ TAA ++YG+
Sbjct: 126 VKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIF 185
Query: 219 KNL-----KGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTF 273
K + + V D+G ++ S++A +G +V TA D H GG DFD +
Sbjct: 186 KTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEH 244
Query: 274 FADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRA 333
FADEFK K+K DI N +A R+ TA E+ K+ LS++T A ++++ +D S+++R
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 304
Query: 334 RFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN 393
EEL L + PV +AL AKL + V ++GG+ RIP +++ + + F GK L+
Sbjct: 305 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLS 363
Query: 394 LSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGV----MTKIVER 449
++N DEA+A GAA AI S ++ D+ P S+ V ++
Sbjct: 364 TTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPA 421
Query: 450 NSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGI--PPAPRGVPKI 507
S P + T D A + T + + + +TG+ P VP +
Sbjct: 422 GSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-V 478
Query: 508 EVTFDLDANGILNVS----------AKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEK 557
++ D +G+ + D+ T K + +TI L ++ ++ + +
Sbjct: 479 KLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENE 538
Query: 558 YKAEDDKQRERVAAKNKLESYAFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWL-EGN 615
A+D E KN LE Y + ++ E+ SDA+KT + + WL +
Sbjct: 539 MLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEG 598
Query: 616 SLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGKGP 649
+ K ++ + + L I + +
Sbjct: 599 FDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKK 632
Score = 311 bits (798), Expect = 6e-97
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPE 67
N KNTV + KR+IG + +++ KH+ +V D K +V + GE F+
Sbjct: 57 QTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSAT 116
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
++++M + K+++ + +++ I VP ++ + QR DA IAGLN +RI+N+ T
Sbjct: 117 QLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVT 176
Query: 128 AAALAYGLDKNL-----KGEKNVLIFDLGGGTFDVSMREIAE 164
AA ++YG+ K + + V D+G ++ S+ +
Sbjct: 177 AAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK 218
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 638 bits (1648), Expect = 0.0
Identities = 245/494 (49%), Positives = 331/494 (67%), Gaps = 21/494 (4%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFA 275
K G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ +
Sbjct: 183 KG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 276 DEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS--TEASLE-IDALHEG---IDFYSK 329
+EFK+ D+ + A++RL+ A E+AK LSS+ T+ +L I A G ++ K
Sbjct: 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI--K 299
Query: 330 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389
+TRA+ E L DL +++ P++ AL DA L I DV+LVGG R+P +QK + +FF G
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 358
Query: 390 KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVER 449
K +NPDEAVA GAAVQ +L+GD ++DVLL+DV PLSLGIET GGVMT ++ +
Sbjct: 359 KEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAK 414
Query: 450 NSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEV 509
N+ IP K Q F+T DNQ+AVTI V +GER DN LG FNL GI PAPRG+P+IEV
Sbjct: 415 NTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEV 474
Query: 510 TFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERV 569
TFD+DA+GIL+VSAKD ++GK ++ITI+ G L++D+I +M+ +AE D K E V
Sbjct: 475 TFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELV 533
Query: 570 AAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKT 629
+N+ + + ++ E++G KL DKT++ A +A T L+G K E +++
Sbjct: 534 QTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGED---KAAIEAKMQE 590
Query: 630 LQQTCTPIMTKLHQ 643
L Q +M Q
Sbjct: 591 LAQVSQKLMEIAQQ 604
Score = 247 bits (632), Expect = 2e-73
Identities = 92/160 (57%), Positives = 119/160 (74%), Gaps = 6/160 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V+ + K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
ALAYGLDK G + + ++DLGGGTFD+S+ EI EV
Sbjct: 176 ALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK 214
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 613 bits (1582), Expect = 0.0
Identities = 219/422 (51%), Positives = 297/422 (70%), Gaps = 13/422 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
++ AE YLG V+ AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K + ++ +L++DLGGGTFDVS+L + +G +F+VK+TAGD HLGG+DFD ++ + ++F
Sbjct: 157 K--EEDQTILVYDLGGGTFDVSILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQF 213
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRAR 334
K++H D+ + A++RL+ A E+AK+ LS T+ + I A G + +TRA+
Sbjct: 214 KQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAK 273
Query: 335 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL 394
FEEL L +T+ PV +AL DA L I V+LVGGS RIP +Q+ ++ GK +
Sbjct: 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHK 332
Query: 395 SINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIP 454
+NPDE VA GAA+Q +++G+ ++DV+L+DV PLSLGIET GGV TK++ERN+ IP
Sbjct: 333 GVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIP 388
Query: 455 CKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLD 514
+ Q FTT +DNQ V I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+D
Sbjct: 389 TSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID 448
Query: 515 ANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
ANGI++V AKD T K + ITI++ G LS+++I RM+ EAE+ D K++E +N+
Sbjct: 449 ANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRKEAAELRNE 507
Query: 575 LE 576
+
Sbjct: 508 AD 509
Score = 208 bits (533), Expect = 3e-60
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 30/154 (19%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 70
NP NT+ KR +G ++ VE +G K++ P+EIS
Sbjct: 59 TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEIS 90
Query: 71 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAA 130
+++L ++ AE YLG V+ AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAA
Sbjct: 91 AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAA 150
Query: 131 LAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
LAYGLDK + ++ +L++DLGGGTFDVS+ E+ +
Sbjct: 151 LAYGLDK--EEDQTILVYDLGGGTFDVSILELGD 182
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 557 bits (1437), Expect = 0.0
Identities = 211/260 (81%), Positives = 232/260 (89%), Gaps = 3/260 (1%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLGGKV AVITVPAYFNDSQRQATKDAG+I GLNVLRIINEPTAAA+AYGLD
Sbjct: 146 MKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLD 205
Query: 219 K--NLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFAD 276
K GEKNVLIFDLGGGTFDVS+L I++G +F+VKSTAGDTHLGGEDFDNR+V+ A+
Sbjct: 206 KKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAE 264
Query: 277 EFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFE 336
EFKRKHKKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EG+DFY+ ITRARFE
Sbjct: 265 EFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFE 324
Query: 337 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI 396
EL DLFR TL PVE+AL DAKLDKG I ++VLVGGS RIPKIQK+LQDFFNGK LN SI
Sbjct: 325 ELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSI 384
Query: 397 NPDEAVAYGAAVQAAILSGD 416
NPDEAVAYGAAVQAAIL GD
Sbjct: 385 NPDEAVAYGAAVQAAILIGD 404
Score = 341 bits (876), Expect = e-112
Identities = 128/158 (81%), Positives = 138/158 (87%), Gaps = 2/158 (1%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NT+FDAKRLIGRKFED +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEE
Sbjct: 78 VAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEE 137
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
ISSMVLTKM+EIAE YLGGKV AVITVPAYFNDSQRQATKDAG+I GLNVLRIINEPTA
Sbjct: 138 ISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTA 197
Query: 129 AALAYGLDK--NLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK GEKNVLIFDLGGGTFDVS+ I +
Sbjct: 198 AAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED 235
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 554 bits (1430), Expect = 0.0
Identities = 152/256 (59%), Positives = 203/256 (79%), Gaps = 2/256 (0%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M++IAE YLG KV+ AV+TVPAYFND+QRQATKDAG+IAGLNVLRI+NEPTAAA+AYGLD
Sbjct: 141 MKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLD 200
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
K+ E ++++DLGGGTFDVS+L+I+ G +F+V++T+GDTHLGGEDFD ++V F
Sbjct: 201 KS-DKEHQIIVYDLGGGTFDVSLLSIENG-VFEVQATSGDTHLGGEDFDYKIVRQLIKAF 258
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
K+KH D+ N +A+ +L+ E+AKR LSS +EID+ +GID +TRA+FEEL
Sbjct: 259 KKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEEL 318
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
+DLF++TL PVE+ L D+ L+K + D+VLVGGS RIPK+Q++L+ +F+GK + INP
Sbjct: 319 NLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINP 378
Query: 399 DEAVAYGAAVQAAILS 414
DEAVAYGAAVQA +LS
Sbjct: 379 DEAVAYGAAVQAGVLS 394
Score = 342 bits (881), Expect = e-112
Identities = 103/156 (66%), Positives = 127/156 (81%), Gaps = 1/156 (0%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VA NP+NT+FD KRLIG K+ D+ +Q+DIKH PF VV+ GKP ++V KGE K F PEE
Sbjct: 73 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEE 132
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS M+L KM++IAE YLG KV+ AV+TVPAYFND+QRQATKDAG+IAGLNVLRI+NEPTA
Sbjct: 133 ISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTA 192
Query: 129 AALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAE 164
AA+AYGLDK+ E ++++DLGGGTFDVS+ I
Sbjct: 193 AAIAYGLDKS-DKEHQIIVYDLGGGTFDVSLLSIEN 227
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 369 bits (951), Expect = e-123
Identities = 138/269 (51%), Positives = 181/269 (67%), Gaps = 21/269 (7%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFA 275
K G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ +
Sbjct: 183 KG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 276 DEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI-------DA---LHEGID 325
+EFK+ D+ + A++RL+ A E+AK LSS+ + ++ DA H I
Sbjct: 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI- 298
Query: 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 385
K+TRA+ E L DL +++ ++ AL DA L I DV+LVGG R+P +QK + +
Sbjct: 299 ---KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAE 355
Query: 386 FFNGKSLNLSINPDEAVAYGAAVQAAILS 414
FF GK +NPDEAVA GAAVQ +L+
Sbjct: 356 FF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 255 bits (655), Expect = 3e-79
Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 6/160 (3%)
Query: 11 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 69
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V KG +K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQI 115
Query: 70 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAA 129
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 130 ALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGG 169
ALAYGLDK G + + ++DLGGGTFD+S+ EI EV
Sbjct: 176 ALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEK 214
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 322 bits (828), Expect = e-108
Identities = 107/149 (71%), Positives = 134/149 (89%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DVAPLSLGIETAGGVMT +++RN+RIP K +TFTTY+DNQ V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LGTF L+GIPPAPRGVP+IEVTF++DANGILNVSA+D STGK+ RITIQN+KGRL++ D
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
IDRM+ EA++++ ED +QRERV A+N+LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 321 bits (826), Expect = e-108
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV L+LGIET GGVMT +++RN+ IP K+ Q F+T DNQ V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LLG F LTGIPPAPRGVP+IEVTF LDANGIL VSA D TGK+E ITI NDKGRL++++
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
IDRM+ EAEK+ +ED + +V ++NKLE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 318 bits (817), Expect = e-106
Identities = 86/149 (57%), Positives = 120/149 (80%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PL+LGIET GGVMTK++ RN+ IP K+ Q F+T +D+Q+AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LG F++TGIPPAPRGVP+IEVTF++D NGIL+VSA+D TG ++TI ND RLS +D
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
I+RM+ +A+K+ A+D Q+E+V ++N+LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 280 bits (718), Expect = 6e-91
Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 4/223 (1%)
Query: 424 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMT 483
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+T DNQ+AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 484 KDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRL 543
DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD ++GK ++ITI+ G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 544 SKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQ 603
++D+I +M+ +AE D K E V +N+ + + ++ E++G KL DKT++
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 604 ACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGG 646
A +A T L+G +K E +++ L Q +M Q
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 265 bits (680), Expect = 8e-86
Identities = 92/179 (51%), Positives = 116/179 (64%), Gaps = 5/179 (2%)
Query: 409 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQ 468
L + +DV PLSLGIET GGV TK++ RN+ IP K+ Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 469 NAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSST 528
V I+V +GER M DN LLG F L GIPPAPRGVP+IEVTFD+DANGI++VSAKD T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 529 GKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 587
G+ ++I IQ+ G LSKDDI+ M+ AEKY ED +++ERV A N E + E
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 260 bits (666), Expect = 5e-83
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 4/220 (1%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLG+ET GG++ K++ RN+ IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
L F L GIP P G I VTF +DA+G+L+V+A + STG I ++ G L+ +
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSA 607
I M+ ++ Y +D K R K + ++ A + LS A++ + A +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 608 TLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGGK 647
+G+ + + E +K + + + +
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVR 217
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 241 bits (617), Expect = 5e-77
Identities = 89/149 (59%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLGIET GG+MTK++ RN+ IP K+ Q F+T +D Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDD 547
LLG F+L GIPPAPRGVP++EVTFD+DANGI+NVSA+D TGK ++I IQ+ G LSKD
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 548 IDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
I+ M+ EAEK AED K++E V N+ E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 213 bits (544), Expect = 1e-66
Identities = 72/137 (52%), Positives = 93/137 (67%), Gaps = 4/137 (2%)
Query: 405 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTY 464
G++ + +VDV PLSLGIET GGVMT ++ +N+ IP K Q F+T
Sbjct: 2 GSSHHHHHHGLV----PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 57
Query: 465 SDNQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAK 524
DNQ+AVTI V +GER DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAK
Sbjct: 58 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 117
Query: 525 DSSTGKAERITIQNDKG 541
D ++GK ++ITI+ G
Sbjct: 118 DKNSGKEQKITIKASSG 134
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 123 bits (310), Expect = 2e-33
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 555 AEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWL 612
+ + + LESYAF +KQ ED K+S DK + C L WL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 613 EGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQAGG---------------KGPDVEEVD 655
+ N AEKEEFE + K L+ PI++KL+Q+ G GP +EEVD
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTIEEVD 120
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 114 bits (287), Expect = 1e-28
Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 59/248 (23%)
Query: 163 AEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLK 222
E LG ++ +A +P +A + AGL ++ +++EP AAA A G++
Sbjct: 84 VERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDG-- 141
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
++ D+GGGT ++V+ ++ + D GG L + F
Sbjct: 142 -----IVVDIGGGTTGIAVI-----EKGKI-TATFDEPTGGTHLSLVLAGSYKIPF---- 186
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
A E K+ S E + + E
Sbjct: 187 --------------EEA-ETIKKDFSRHREIMRVVRPVIE-------------------- 211
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
+ + + + V +VGG+ + + F GK + + I+P
Sbjct: 212 ------KMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVT 264
Query: 403 AYGAAVQA 410
G A+
Sbjct: 265 PLGIALFG 272
Score = 85.7 bits (213), Expect = 1e-18
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 68 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT 127
+ ++ +++ E LG ++ +A +P +A + AGL ++ +++EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 128 AAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 158
AAA A G++ ++ D+GGGT ++
Sbjct: 131 AAARALGINDG-------IVVDIGGGTTGIA 154
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 109 bits (273), Expect = 2e-28
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 19/112 (16%)
Query: 563 DKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGNSLAEK 620
+ ERV+AKN LESYAF +K A ED G K+S+ADK V C ++WL+ N+LAEK
Sbjct: 2 NAAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEK 61
Query: 621 EEFEDRLKTLQQTCTPIMTKLHQAGG-----------------KGPDVEEVD 655
+EFE + K L+Q C PI++ L+Q G GP +EEVD
Sbjct: 62 DEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 97.7 bits (243), Expect = 2e-24
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 24/112 (21%)
Query: 568 RVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFED 625
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 626 RLKTLQQTCTPIMTKLHQAGG----------------------KGPDVEEVD 655
+ K L++ C PI+TKL+Q+ G GP +EEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 97.2 bits (241), Expect = 3e-22
Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 36/247 (14%)
Query: 166 YLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 225
Y + + +++ T + G + ++++ E A + L
Sbjct: 107 YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQE--LDELD 164
Query: 226 NVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKD 285
++LI DLGG T D+S + G L + GD+ LG + +
Sbjct: 165 SLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDAL----------- 210
Query: 286 ILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQ 345
RT SS A I + +I + + +
Sbjct: 211 ----------------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 254
Query: 346 TLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVA 403
L +E+ + + + V+++GG + I ++ + + N +
Sbjct: 255 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 312
Query: 404 YGAAVQA 410
G +
Sbjct: 313 NGMYLIG 319
Score = 55.2 bits (132), Expect = 3e-08
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 84 YLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEK 143
Y + + +++ T + G + ++++ E A + L
Sbjct: 107 YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQE--LDELD 164
Query: 144 NVLIFDLGGGTFDVSM 159
++LI DLGG T D+S
Sbjct: 165 SLLIIDLGGTTLDISQ 180
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 73.7 bits (180), Expect = 3e-14
Identities = 36/262 (13%), Positives = 79/262 (30%), Gaps = 51/262 (19%)
Query: 161 EIAEVYLGGKVSEAVIT-VPAYFNDSQRQATKDA------------GSIAGLNVLRIINE 207
E G V + + P D + +A K+A G + N+ R+I
Sbjct: 110 ESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR 169
Query: 208 PTAAALAYGL---DKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGE 264
P A L + ++ D+G T DV + + + V + +G
Sbjct: 170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP--VVELSFSLQIGVG 227
Query: 265 DFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI 324
D + L + + ++ + + R K+ +
Sbjct: 228 DAISAL----SRKIAKETGFVVPFDLAQEALSHPVMFRQKQ------------------V 265
Query: 325 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 384
+++ E+L + + ++ + ++ VGG + I +
Sbjct: 266 GG-PEVSGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFE 315
Query: 385 DFFNGKSLNLSI-NPDEAVAYG 405
+ G + + + A A G
Sbjct: 316 EIAPGTLVKIKPEDLQFANALG 337
Score = 61.3 bits (148), Expect = 3e-10
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 16/124 (12%)
Query: 52 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVIT-VPAYFNDSQRQATKD 110
+ + A +E ++ + E G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 111 A------------GSIAGLNVLRIINEPTAAALAYGL---DKNLKGEKNVLIFDLGGGTF 155
A G + N+ R+I P A L + ++ D+G T
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTT 202
Query: 156 DVSM 159
DV
Sbjct: 203 DVLT 206
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 72.8 bits (178), Expect = 4e-14
Identities = 31/260 (11%), Positives = 73/260 (28%), Gaps = 52/260 (20%)
Query: 162 IAEVYLGGKVSEA--VITVPA--YFNDSQRQATKDA------------GSIAGLNVLRII 205
I +V K ++ V+ P N ++ +D + I
Sbjct: 94 ITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT 153
Query: 206 NEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGED 265
+ + + + +N K KNV + D GG S+ + S G +D
Sbjct: 154 IKAEGSGVLFLEQENFK-NKNVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKD 208
Query: 266 FDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGID 325
R+ D + +++ N +A L G
Sbjct: 209 LIIRV----GDALTDLNNGNLITNEQAESALN------------------------NGYM 240
Query: 326 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 385
+ + + L + + + ++ +GG+ + +++ +
Sbjct: 241 KKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISK 298
Query: 386 FFNGKSLNLSINPDEAVAYG 405
+ + ++ N G
Sbjct: 299 TY-PNNSIITNNSQWTTCEG 317
Score = 46.6 bits (110), Expect = 1e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 80 IAEVYLGGKVSEA--VITVPA--YFNDSQRQATKDA------------GSIAGLNVLRII 123
I +V K ++ V+ P N ++ +D + I
Sbjct: 94 ITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT 153
Query: 124 NEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
+ + + + +N K KNV + D GG S+
Sbjct: 154 IKAEGSGVLFLEQENFK-NKNVAVIDFGGLNMGFSL 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 2e-12
Identities = 82/504 (16%), Positives = 152/504 (30%), Gaps = 122/504 (24%)
Query: 173 EAVITVPA--YFNDSQRQATKDAGSIAGLNVLRIINEPTAAA------LAYGLDKNLKGE 224
E V+ VP +F SQ Q + +EPT A L Y +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 225 KNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKK 284
G V L + E F+ + +L G D + A + +++
Sbjct: 77 V--------GQFDQVLNLCLTE---FE------NCYLEGND-----IHALAAKLLQENDT 114
Query: 285 DILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEG-IDFYSK-----ITRARFEEL 338
++ ++ TA AKR + ++L A+ EG + T FEEL
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 339 -------------CMDLFRQTLAPVERALNDAK------LD-------KGSIHDV-VLVG 371
+ +TL+ + R DA+ L+ + D L+
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 372 GSIRIPKIQKMLQDFFN----GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLV 427
I P I ++Q + K L P E + L G + Q ++
Sbjct: 234 IPISCPLIG-VIQ-LAHYVVTAKLLGF--TPGEL--------RSYLKG-ATGHSQGLVTA 280
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
+ E+ + K + I + + + S + + + E
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-------- 332
Query: 488 LLGTFNLTGIPPAP----RGVPKIEVTFDLDA-NGILNVSAKDSSTGKAERITIQNDKGR 542
G P+P + + +V ++ N L + I++ N G
Sbjct: 333 --GV-------PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-------ISLVN--GA 374
Query: 543 ----LS--KDDIDRMLAEAEKYKAEDDKQRERV-AAKNKLE-SYAFAVKQAAEDSGSKLS 594
+S + + K KA + R+ ++ KL+ S F + S L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-HLLV 433
Query: 595 DADKTSVSQACSATLTWLEGNSLA 618
A +++ +
Sbjct: 434 PASDLINKDLVKNNVSF-NAKDIQ 456
Score = 51.2 bits (122), Expect = 1e-06
Identities = 55/314 (17%), Positives = 95/314 (30%), Gaps = 134/314 (42%)
Query: 323 GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK--G-SIHDVV---------LV 370
G+D Y A+ D++ RA D G SI D+V
Sbjct: 1632 GMDLYKTSKAAQ------DVW-------NRA--DNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 371 GG----SIRI--------------PKIQKMLQDFFNGKSLNLSINPDEAV----AYGAAV 408
GG IR K +K+ ++ N S + + ++ + +
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKGLLSATQF---T 1732
Query: 409 QAAILSGDTSSAIQDVL----LVD----VAPLSLGIE-TA----GGVMTKIVERNSRIPC 455
Q A+ A + L L+ A SLG E A VM+
Sbjct: 1733 QPALTL--MEKAAFEDLKSKGLIPADATFAGHSLG-EYAALASLADVMS----------- 1778
Query: 456 KQQQTFTTYSDNQNAVTIQVFE-GE---RAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTF 511
++ V + VF G A+ +D + + I P ++ +F
Sbjct: 1779 -----I------ESLVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPG-----RVAASF 1821
Query: 512 DLDA------------NGIL-----NVS-----------AKDSSTG-----KAERITIQN 538
+A ++ NV A D+ T K ++I I
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 539 DKGRLSKDDIDRML 552
+ LS ++++ L
Sbjct: 1882 LQKSLSLEEVEGHL 1895
Score = 38.1 bits (88), Expect = 0.010
Identities = 43/240 (17%), Positives = 79/240 (32%), Gaps = 55/240 (22%)
Query: 416 DTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYS-----DNQNA 470
TS A QDV + A +T G + IV N P F +N +A
Sbjct: 1637 KTSKAAQDVW--NRADNHFK-DTYGFSILDIVINN---PVNLTIHFGGEKGKRIRENYSA 1690
Query: 471 VTIQVFEGERAMTKDNNLLGTFNLTGIP-PAPRGV--------PKIEVT----F-DLDAN 516
+ + + T+ + T + +G+ P + + F DL +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 517 GILNVSAKDS-----STG-------KAERITIQND-------KGRLSKDDIDRMLAEAEK 557
G++ D+ S G A+ ++I+ +G + + R
Sbjct: 1751 GLIP---ADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 558 YK--AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDA-DKTSVSQ-ACSATLTWLE 613
Y A + RVAA E+ + V++ + +G + Q + L L+
Sbjct: 1807 YGMIAINP---GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 8e-11
Identities = 69/460 (15%), Positives = 141/460 (30%), Gaps = 128/460 (27%)
Query: 258 DTHLGGEDFDNR-LVTFFADEFKRKHK-KDILANTRAV---------RRLRTACERAKR- 305
D G + + +++ F D F KD+ +++ + A R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 306 --TLSSSTEASLEI---DALHEGIDF-YSKI-TRARFEELCMDLFRQTLAPVERALNDA- 357
TL S E ++ + L F S I T R + ++ + +R ND
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQ 124
Query: 358 KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA-YGAAVQAAILSGD 416
K ++V R+ K L+ ++L L + P + V G SG
Sbjct: 125 VFAK---YNVS------RLQPYLK-LR-----QAL-LELRPAKNVLIDGVLG-----SGK 163
Query: 417 TS---SAIQDVLLVDVAP-----LSLG-IETAGGVMTKIVERNSRIPCKQQQTFTTYSDN 467
T + L+L + V+ + + +I +T+ SD+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDH 219
Query: 468 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRG------V--PKIEVTFDLDANGIL 519
+ + +++ + LL + P V K F+L IL
Sbjct: 220 SSNIKLRI---HSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAFNLSCK-IL 269
Query: 520 NVSAKDSS------TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAED----------- 562
++ + I++ + L+ D++ +L + + +D
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 563 ------DKQRERVAAKNKLESYAF-AVKQAAEDSGSKLSDADKTSVSQACS--------- 606
+ R+ +A + + + E S + L A+ + S
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 607 -ATLT--WLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLHQ 643
L+ W + K + ++ KLH+
Sbjct: 389 TILLSLIWFDV----IKSDVMV-----------VVNKLHK 413
Score = 61.4 bits (148), Expect = 8e-10
Identities = 108/700 (15%), Positives = 211/700 (30%), Gaps = 230/700 (32%)
Query: 28 FEDQKIQE-DIKHWPFTVVSDGGKPKIQVEYKGEIKKF--APEEISS------MVLTKMR 78
FED + D K V D K + K EI + + +S +L+K
Sbjct: 25 FEDAFVDNFDCKD-----VQDMPKSILS---KEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 79 EIAEVYLGGK-------VSEAVITVP-------AYFNDSQRQATKDAGSIAGLNVLRIIN 124
E+ + ++ + + T + + + + D A NV R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--- 133
Query: 125 EPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFND 184
L L L+ KNVLI + G GK T A
Sbjct: 134 LQPYLKLRQAL-LELRPAKNVLIDGVLG---------------SGK------TWVA---- 167
Query: 185 SQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIF--DLGGGTFDVSVL 242
L+V ++ + + IF +L +VL
Sbjct: 168 --------------LDVCL--------------SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 243 AIDEGSLFQVKS--TAGDTH-----LGGEDFDNRLVTFFADEFKRKHKKDIL-----ANT 290
+ + L+Q+ T+ H L L + ++ +L N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNA 256
Query: 291 RAVRRLRTACERAKRTLSSSTEASLEIDAL------HEGIDFYSK-ITRARFEEL---CM 340
+A +C + L ++ + D L H +D +S +T + L +
Sbjct: 257 KAWNAFNLSC----KILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 341 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIR-------------IPKIQKMLQDFF 387
D Q L P E + + ++ SIR K+ +++
Sbjct: 312 DCRPQDL-PRE-----VL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 388 NGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGI-------ETAG 440
N + P E + ++ + + L +
Sbjct: 364 N------VLEPAEYRKM--FDRLSVFPPS----------AHIPTILLSLIWFDVIKSDVM 405
Query: 441 GVMTKIVERNSRIPCKQQQTFTTYS--DNQNAVTIQVFEGERAMTKDNNLLGTFNL---- 494
V+ K+ + + ++Q +T S + +++ E E A+ + +++ +N+
Sbjct: 406 VVVNKLHKYSL---VEKQPKESTISIPSIYLELKVKL-ENEYALHR--SIVDHYNIPKTF 459
Query: 495 ---TGIPPAPRG---------VPKIEVT--FDLDANGILN---VSAKDSSTGKAERITIQ 537
IPP + IE L L+ + K A
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----W 514
Query: 538 NDKGRLSKDDIDRMLAEAEKYK---AEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLS 594
N G + L + + YK ++D + ER+ N + + + + E+ L
Sbjct: 515 NASGSILNT-----LQQLKFYKPYICDNDPKYERLV--NAILDF---LPKIEEN----LI 560
Query: 595 DADKTSVSQACSATLTWLEGNSLAEKEE--FEDRLKTLQQ 632
+ T + + +L ++E FE+ K +Q+
Sbjct: 561 CSKYTDLLRI-----------ALMAEDEAIFEEAHKQVQR 589
Score = 33.7 bits (76), Expect = 0.21
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 27 KFEDQKIQEDIKHW--PFTVVSDGG-----KPKIQV------EYKGEIKKFAPEEISSMV 73
+F +QKI+ D W ++++ KP I I F P+ +++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 74 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATK 109
+K ++ + L + A F ++ +Q +
Sbjct: 561 CSKYTDLLRIALMAEDE-------AIFEEAHKQVQR 589
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 60.1 bits (145), Expect = 9e-10
Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 39/215 (18%)
Query: 203 RIINEPTAAALAYGLDKNLK----GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGD 258
+I+ +P L ++ E + D G GT + V+ +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR--VEEESFV 213
Query: 259 THLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEID 318
+ G DF R+ A +K + +S +
Sbjct: 214 INKGTIDFYKRI----ASHVSKKSE------------------------GASITPRMIEK 245
Query: 319 ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 378
L ++ T F++ + V + SI +++ GG I
Sbjct: 246 GLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGGANI-- 303
Query: 379 IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 413
L ++ + + + G +L
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELL 337
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/197 (11%), Positives = 51/197 (25%), Gaps = 25/197 (12%)
Query: 8 SVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQ--VEYKGEIKKFA 65
S N K + K + + + + + + + ++
Sbjct: 29 SRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYD 88
Query: 66 PEEISSMVLTKMREIAEVYLGGKVSEAVIT---VPAYFNDSQRQATKDAGSIAGLNV--- 119
+ +V + +A V+ + T D Q + K + +
Sbjct: 89 IKSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGI 148
Query: 120 --------LRIINEPTAAALAYGLDKNLK----GEKNVLIFDLGGGTFDVSMREIAEVYL 167
++I+ +P L ++ E + D G GT +
Sbjct: 149 AKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT-----YQN 203
Query: 168 GGKVSEAVITVPAYFND 184
+V E + D
Sbjct: 204 MKRVEEESFVINKGTID 220
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 48.7 bits (116), Expect = 3e-06
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 27/194 (13%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTA 256
AGL + + +P A + ++ L+ D+G + + +L + L
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR-GDKPLAV----- 216
Query: 257 GDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLE 316
L G+DF + F + E KRT +T + +
Sbjct: 217 RVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPTED 257
Query: 317 IDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALN--DAKLDKGSIHDVVLVGGSI 374
+ L + + + R + + + + R+L +L++ S L+GG
Sbjct: 258 EELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGS 317
Query: 375 RIPKIQKMLQDFFN 388
++ + +L D
Sbjct: 318 KLRGLASLLTDTLG 331
Score = 31.7 bits (72), Expect = 0.73
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 115 AGLNVLRIINEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSM 159
AGL + + +P A + ++ L+ D+G + + +
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVL 207
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 41.6 bits (98), Expect = 6e-04
Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 44/205 (21%)
Query: 197 AGLNVLRIINEPTAAALAYGLDKNLKGEKN--VLIFDLGGGTFDVSVLAIDEGSLFQVKS 254
+ ++ + + A L EK+ V++ +LG + G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTT---PEKDRGVVVVNLGYNFTGLIA--YKNGVP---IK 230
Query: 255 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRT-----LSS 309
+ +G + V KD+ + + ER T +
Sbjct: 231 ISYVP-VGMKH-----VI-----------KDV---SAVLDTSFEESERLIITHGNAVYND 270
Query: 310 STEASLEIDALHEG------IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGS 363
E ++ L S I AR E+ M ++ VE + +
Sbjct: 271 LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEEGEIGI- 328
Query: 364 IHDVVLVGGSIRIPKIQKMLQDFFN 388
VVL GG +IP+I ++ + F
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVFK 353
Score = 32.3 bits (74), Expect = 0.45
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 115 AGLNVLRIINEPTAAALAYGLDKNLKGEKN--VLIFDLGGGTFDVSMREIAEVYLGGKV 171
+ ++ + + A L EK+ V++ +LG + Y G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTT---PEKDRGVVVVNLGYNFTGLI------AYKNGVP 228
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 39.8 bits (94), Expect = 0.002
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 28/117 (23%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV------L 228
VI VP D +R+A DAG AG + + +I EP AAA+ L+ V +
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--------VEEPSGNM 150
Query: 229 IFDLGGGTFDVSVLAIDEGSLFQVKS--TAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
+ D+GGGT +V+V+++ GS+ +S AGD + D +V + + ++
Sbjct: 151 VVDIGGGTTEVAVISL--GSIVTWESIRIAGD------EMDEAIVQY----VRETYR 195
Score = 35.5 bits (83), Expect = 0.046
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 19/86 (22%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGEKNV------L 146
VI VP D +R+A DAG AG + + +I EP AAA+ L+ V +
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--------VEEPSGNM 150
Query: 147 IFDLGGGTFDVSMREIAEVYLGGKVS 172
+ D+GGGT E+A + LG V+
Sbjct: 151 VVDIGGGT-----TEVAVISLGSIVT 171
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 39.3 bits (92), Expect = 0.003
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
C++L R A + R ++L+GG + I+ + G +
Sbjct: 414 CLELIRSLGASITR--------------ILLIGGGAKSEAIRTLAPSIL-GMDVTR-PAT 457
Query: 399 DEAVAYGAAVQAAILSGDTSS 419
DE VA GAA QAA + +
Sbjct: 458 DEYVAIGAARQAAWVLSGETE 478
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.005
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 521 VSAKDSSTGKAERIT---IQNDKGRLSKDD------IDRMLAEAEKYKAEDDKQRERVAA 571
++ D T + E I + K RL + D +A+K E ++++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 572 KNKLESYAFAVKQAAEDSGSKLSDAD 597
KNK+ + + A+ + + DAD
Sbjct: 133 KNKINN------RIADKAFYQQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.015
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 567 ERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATL 609
E+ A K KL++ ++K A+DS L A AT+
Sbjct: 18 EKQALK-KLQA---SLKLYADDSAPAL----------AIKATM 46
Score = 32.2 bits (72), Expect = 0.27
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 373 SIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 412
+++ K+Q SL L D A A A++A +
Sbjct: 21 ALK--KLQA---------SLKL-YADDSAPAL--AIKATM 46
Score = 30.3 bits (67), Expect = 1.2
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 21/51 (41%)
Query: 29 EDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 79
E Q ++ K+Q +K +A + ++ + E
Sbjct: 18 EKQALK-----------------KLQ----ASLKLYADDSAPALAIKATME 47
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 35.7 bits (83), Expect = 0.049
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 398
MD+ + V L+GG R ++ML D G+ L+
Sbjct: 376 GMDVVHACGIKPQS--------------VTLIGGGARSEYWRQMLADIS-GQQLDYRTGG 420
Query: 399 DEAVAYGAAVQAAILSGDTSS 419
D A GAA A I + S
Sbjct: 421 DVGPALGAARLAQIAANPEKS 441
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 33.0 bits (76), Expect = 0.33
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 359 LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTS 418
L + + +VGG R +M+ D SL + + G A AA+ +
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPDAHLHPLRGLAALAAVELEWSH 456
Query: 419 SAIQDVLLVDVAP 431
S + D+
Sbjct: 457 SIQDFLREADLRE 469
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 31.4 bits (72), Expect = 0.93
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT-----AAALAYGLDKNLKGEKNVLI 147
+ITV +D+ A KD +R + EP+ A Y N++GE+ I
Sbjct: 262 IITVD---SDAICAAMKDL-----FEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
Query: 148 FDLGGGTFDVS-MREIAEVYLGGKVSEAVITV 178
L G + +R ++E G+ EA++ V
Sbjct: 314 --LSGANVNFHGLRYVSERCELGEQREALLAV 343
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 31.0 bits (71), Expect = 1.2
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 121 RIINEP-----TAAALAYGLDKNLKGEKNVLIFDLGGGTFDVS-MREIAE 164
R I E A A AY +K E V I G D S + ++ E
Sbjct: 311 RNILETSGAVAIAGAAAYCEFYKIKNENIVAI--ASGANMDFSKLHKVTE 358
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 30.6 bits (70), Expect = 1.5
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 93 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT-----AAALAYGLDKNLKGEKNVLI 147
++ V D R + + ++I E AA L+ LD +++ K V I
Sbjct: 271 IVLVS---EDEIRNSMIAL-----IQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSI 322
Query: 148 FDLGGGTFDVS-MREIAE 164
+ GG D+S + +I
Sbjct: 323 --ISGGNIDLSRVSQITG 338
Score = 29.4 bits (67), Expect = 3.6
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 175 VITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPT-----AAALAYGLDKNLKGEKNVLI 229
++ V D R + + ++I E AA L+ LD +++ K V I
Sbjct: 271 IVLVS---EDEIRNSMIAL-----IQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSI 322
Query: 230 FDLGGGTFDVSVLA 243
+ GG D+S ++
Sbjct: 323 --ISGGNIDLSRVS 334
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 362 GSIHDVVLVGG-SIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSA 420
+H++ GG + + ++ D + + ++ + + A GAA+ A++ +G
Sbjct: 438 VEVHELYACGGLPQKNHLLMQIFADVT-NREIKVAAS-KQTPALGAAMFASVAAGSEVGG 495
Query: 421 IQDVLLVDVAPLSLGIETAGGVMTKIVER 449
IE A M ++ +
Sbjct: 496 YDS------------IEEAAKKMGRVKDE 512
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 29.9 bits (68), Expect = 2.6
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 330 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 389
+ R F+ L + L + + + +VGG + + ++ D
Sbjct: 367 LARCIFDSLALLY-ADVLHELAQLRG------EDFSQLHIVGGGCQNTLLNQLCADACG- 418
Query: 390 KSLNLSINPDEAVAYGAAVQAAILSGDTSS 419
+ + P EA G + + ++
Sbjct: 419 --IRVIAGPVEASTLGNIGIQLMTLDELNN 446
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 30.0 bits (68), Expect = 3.1
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 362 GSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 415
+I ++ GG + P + + G ++ L EA+ G+A+ + +G
Sbjct: 441 YNIDTMMASGGGTKNPIFVQEHANAT-GCAMLL-PEESEAMLLGSAMMGTVAAG 492
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 29.6 bits (67), Expect = 3.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 114 IAGLNVLRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGG 153
+ + II+ A L + G++ + L+ D+GGG
Sbjct: 108 VIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGG 147
Score = 29.6 bits (67), Expect = 3.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 IAGLNVLRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGG 235
+ + II+ A L + G++ + L+ D+GGG
Sbjct: 108 VIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGG 147
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.4 bits (66), Expect = 4.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 538 NDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAED 588
+++ +L ++D +L AE + D + + L F V D
Sbjct: 742 DNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFL--KQFEVTDYKAD 790
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 28.9 bits (65), Expect = 5.0
Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 29/131 (22%)
Query: 102 DSQRQATKDAGSIAGLNVLRI-INEPTAAALAYGLD-----KNLKGEKNVLI---FDLGG 152
D + + D G G+ + + + + + + N+ GE + I F G
Sbjct: 195 DEELKFIADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQGH 254
Query: 153 GTFDVSMREIAEVYLGGKVSEAVITVPAYFND----------------SQRQATKDAGSI 196
G + Y + I P +R K +
Sbjct: 255 GHDFFEWLTHDKGYARRLTNFGKIVNPLGIRTVGEFPNLTETLLKRGMPERVVRK----V 310
Query: 197 AGLNVLRIINE 207
G N +R++ +
Sbjct: 311 MGENWVRVLRD 321
>1j8b_A YBAB; hypothetical protein, structural genomics, structure
function project, S2F, unknown function; HET: MSE;
1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB:
1pug_A
Length = 112
Score = 27.2 bits (61), Expect = 6.2
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 31 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAE 82
QK+QE+I T S G KI + ++ +I ++ +E+ E
Sbjct: 25 QKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI---DIDPSLMEDDKEMLE 73
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 28.0 bits (62), Expect = 6.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 501 PRGVPKIEVTFDLDANGILNVSAKDSSTGKAER-ITIQ 537
P V + +T L ++G+L V+ ER I I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPIT 162
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 28.3 bits (64), Expect = 8.6
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 22/96 (22%)
Query: 330 ITRARFE------ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 383
+ RA E + + +R G R ++
Sbjct: 375 LWRALLEAVALAFRHHVAVLDDIGHAPQR--------------FFASDGGTRSRVWMGIM 420
Query: 384 QDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSS 419
D + + L N A GAA AAI GD
Sbjct: 421 ADVL-QRPVQLLAN-PLGSAVGAAWVAAIGGGDDLG 454
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase;
1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB:
1t6d_A 2j4r_A*
Length = 315
Score = 28.3 bits (64), Expect = 8.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 120 LRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGG 153
+ +I AY + +LK E V + D GGG
Sbjct: 114 VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGG 148
Score = 28.3 bits (64), Expect = 8.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 202 LRIINEPTAAALAY-GLDKNLKGEKNVLIFDLGGG 235
+ +I AY + +LK E V + D GGG
Sbjct: 114 VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGG 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,882,382
Number of extensions: 635336
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1469
Number of HSP's successfully gapped: 85
Length of query: 655
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 555
Effective length of database: 3,909,693
Effective search space: 2169879615
Effective search space used: 2169879615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)