RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3270
(655 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 249 bits (637), Expect = 7e-80
Identities = 156/192 (81%), Positives = 171/192 (89%), Gaps = 1/192 (0%)
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKH 282
E+NVLIFDLGGGTFDVS+L I++G +F+VKSTAGDTHLGGEDFDNR+V F EFKRKH
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH 61
Query: 283 KKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDL 342
KKDI N RAVRRLRTACERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL DL
Sbjct: 62 KKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
Query: 343 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 402
FR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+LQDFFNGK LN SINPDEAV
Sbjct: 122 FRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 181
Query: 403 AYGAAVQAAILS 414
AYGAAVQAAILS
Sbjct: 182 AYGAAVQAAILS 193
Score = 41.9 bits (98), Expect = 8e-05
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 141 GEKNVLIFDLGGGTFDVSMREIAE 164
E+NVLIFDLGGGTFDVS+ I +
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIED 26
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 243 bits (622), Expect = 2e-77
Identities = 84/199 (42%), Positives = 124/199 (62%), Gaps = 8/199 (4%)
Query: 223 GEKNVLIFDLGGGTFDVSVLAIDE---GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279
G + + ++DLGGGTFD+S++ IDE F+V +T GDTHLGGEDFD+RL+ + +EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI----DFYSKITRARF 335
+ D+ + A++RL+ A E+AK LSS+ + + + + K+TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 336 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
E L DL +++ ++ AL DA L I DV+LVGG R+P +QK + +FF GK
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 396 INPDEAVAYGAAVQAAILS 414
+NPDEAVA GAAVQ +L+
Sbjct: 180 VNPDEAVAIGAAVQGGVLT 198
Score = 44.1 bits (104), Expect = 2e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 141 GEKNVLIFDLGGGTFDVSMREIAEVYLGGKV 171
G + + ++DLGGGTFD+S+ EI EV
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 31
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 224 bits (571), Expect = 1e-70
Identities = 121/159 (76%), Positives = 140/159 (88%)
Query: 418 SSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFE 477
S +QD+LL+DV PLSLGIETAGGVMT +++RN+ IP KQ QTFTTYSDNQ V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 478 GERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQ 537
GERAMTKDNNLLG F LTGIPPAPRGVP+IEVTFD+DANGILNVSA D STGK +ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 538 NDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 576
NDKGRLSK+DI+RM+ EAEKYKAED+KQR++V++KN LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 192 bits (490), Expect = 2e-58
Identities = 103/129 (79%), Positives = 116/129 (89%)
Query: 9 VAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEE 68
VAMNP NTVFDAKRLIGR+F+D +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE
Sbjct: 56 VAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEE 115
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
+SSMVLTKM+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTA
Sbjct: 116 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 175
Query: 129 AALAYGLDK 137
AA+AYGLDK
Sbjct: 176 AAIAYGLDK 184
Score = 102 bits (255), Expect = 9e-26
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
M+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG+IAGLNVLRIINEPTAAA+AYGLD
Sbjct: 124 MKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLD 183
Query: 219 K 219
K
Sbjct: 184 K 184
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 179 bits (456), Expect = 2e-54
Identities = 72/118 (61%), Positives = 91/118 (77%)
Query: 424 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMT 483
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+T DNQ+AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 484 KDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 541
DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD ++GK ++ITI+ G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 178 bits (453), Expect = 3e-53
Identities = 78/130 (60%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 10 AMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEE 68
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V+ + K AP +
Sbjct: 57 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQ 112
Query: 69 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTA 128
IS+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG IAGL V RIINEPTA
Sbjct: 113 ISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 172
Query: 129 AALAYGLDKN 138
AALAYGLDK
Sbjct: 173 AALAYGLDKG 182
Score = 109 bits (274), Expect = 2e-28
Identities = 52/93 (55%), Positives = 60/93 (64%), Gaps = 9/93 (9%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVS---------MREIAEVYLGGKVSEAVITVPAYFNDSQR 187
K + + ++ G M++ AE YLG V+EAVITVPAYFND+QR
Sbjct: 90 KIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQR 149
Query: 188 QATKDAGSIAGLNVLRIINEPTAAALAYGLDKN 220
QATKDAG IAGL V RIINEPTAAALAYGLDK
Sbjct: 150 QATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 158 bits (401), Expect = 9e-47
Identities = 52/114 (45%), Positives = 73/114 (64%)
Query: 428 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTTYSDNQNAVTIQVFEGERAMTKDNN 487
DV PLSLG+ET GG++ K++ RN+ IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 488 LLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 541
L F L GIP P G I VTF +DA+G+L+V+A + STG I ++ G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 109 bits (272), Expect = 5e-28
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 15/190 (7%)
Query: 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
++ D+GGGT +V+V+++ T + G++ D +V + + ++
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSI------VTWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 284 KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLF 343
+ + + + E ++ L G+ + E +
Sbjct: 60 ERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 344 RQTLAPVERALNDAKLDKGS---IHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 400
+ V L + S + L GG + + +LQ G S+ S P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLT 173
Query: 401 AVAYGAAVQA 410
AVA GA +
Sbjct: 174 AVAKGAGMVL 183
Score = 39.9 bits (92), Expect = 3e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 142 EKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITVPAYFNDS 185
++ D+GGGT +V++ + LG V+ I + D
Sbjct: 6 PSGNMVVDIGGGTTEVAV-----ISLGSIVTWESIRIAGDEMDE 44
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 98.7 bits (246), Expect = 1e-25
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 571 AKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLK 628
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE + K
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 629 TLQQTCTPIMTKLHQAGGKGP 649
L++ C PI+TKL+Q+ G P
Sbjct: 62 ELEKVCNPIITKLYQSAGGMP 82
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 99.6 bits (247), Expect = 6e-25
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 34/194 (17%)
Query: 219 KNLKGEKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEF 278
+ L ++LI DLGG T D+S + G L + GD+ LG + + +
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 279 KRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEEL 338
+ A I + +I +
Sbjct: 58 TKGSSYL---------------------------ADDIIIHRKDNNYLKQRINDENKISI 90
Query: 339 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-- 396
+ + L +E+ + + + V+++GG + I ++ +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 148
Query: 397 NPDEAVAYGAAVQA 410
N + G +
Sbjct: 149 NSQYDLVNGMYLIG 162
Score = 38.7 bits (89), Expect = 7e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 137 KNLKGEKNVLIFDLGGGTFDVSM 159
+ L ++LI DLGG T D+S
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQ 23
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 87.1 bits (216), Expect = 2e-21
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 602
L++D+I +M+ +AE D K E V +N+ + + ++ E++G KL DKT++
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 603 QACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIM 638
A +A T L+G +K E +++ L Q +M
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 84.4 bits (208), Expect = 5e-20
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 3 ISLDL-----SVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEY 57
I +DL V + K V + +I +I + + K
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPM 62
Query: 58 KGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGL 117
+ A ++ ++L A+ + VI VP D +R+A DAG AG
Sbjct: 63 RD--GVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGA 120
Query: 118 NVLRIINEPTAAALAYGLD 136
+ + +I EP AAA+ G +
Sbjct: 121 SKVFLIEEPMAAAI--GSN 137
Score = 73.6 bits (180), Expect = 3e-16
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 159 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLD 218
A+ + VI VP D +R+A DAG AG + + +I EP AAA+ G +
Sbjct: 80 FINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 83.3 bits (205), Expect = 3e-19
Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 35/183 (19%)
Query: 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK 283
++ D+G T DV I+ + V + +G D + L A E
Sbjct: 5 PGYGVVIDVGSRTTDVLT--INLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 284 KDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLF 343
D+ + + + +++ E+L +
Sbjct: 63 FDL---AQEALSHPVMFRQKQVGG--------------------PEVSGPILEDLANRII 99
Query: 344 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSI-NPDEAV 402
+ ++ + ++ VGG + I ++ G + + + A
Sbjct: 100 ENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 150
Query: 403 AYG 405
A G
Sbjct: 151 ALG 153
Score = 32.0 bits (72), Expect = 0.10
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 142 EKNVLIFDLGGGTFDVSMREIAEVYLGGKVSEAVITV 178
++ D+G T DV + L ++
Sbjct: 5 PGYGVVIDVGSRTTDVLT-----INLMDMEPVVELSF 36
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 76.9 bits (189), Expect = 1e-17
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 602
L+ +I M+ ++ Y +D K R K + ++ A + LS A++ +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 603 QACSATLTWLEGNSLAEKEEFEDRLKTLQQTCTPIMTKLH----QAGGKGPDVEE 653
A + +G+ + + E +K + + + + KG V+E
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDE 112
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 41.8 bits (97), Expect = 8e-05
Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 222 KGEKN--VLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFK 279
EK+ V++ +LG + G ++ +G + + F+
Sbjct: 2 TPEKDRGVVVVNLGYNFTGLIA--YKNGVPIKISY----VPVGMKHVIKDVSAVLDTSFE 55
Query: 280 RKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELC 339
+ I+ + AV E R L +T + L I AR E+
Sbjct: 56 ESERL-IITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI- 106
Query: 340 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 388
M ++ VE + + VVL GG +IP+I ++ + F
Sbjct: 107 MSKSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 31.4 bits (70), Expect = 0.30
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 121 RIINEPT-----AAALAYGLDKNLKGEKNVLIFDLGGGTFDVS-MREIAE 164
R + EP+ A Y N++GE+ I L G + +R ++E
Sbjct: 278 RAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGLRYVSE 325
Score = 28.3 bits (62), Expect = 3.3
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 203 RIINEPT-----AAALAYGLDKNLKGEKNVLIFDLGGGTFDVSVL 242
R + EP+ A Y N++GE+ I L G + L
Sbjct: 278 RAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGL 320
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 31.2 bits (70), Expect = 0.35
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 525 DSSTGKAERITIQNDKG--RLSKDDIDRMLAEAEKYKAEDDKQRE 567
S E ++ D+ L+ ++I++ +AE EK K E++K+++
Sbjct: 199 QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 28.8 bits (65), Expect = 0.48
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 31 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 90
QK+QE+I T S G KI + ++ +I ++ +E+ E
Sbjct: 16 QKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI---DIDPSLMEDDKEMLE-------- 64
Query: 91 EAVITVPAYFNDSQRQATKDA 111
+ + A FND+ R+A +
Sbjct: 65 DLIA---AAFNDAVRRAEELQ 82
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 28.8 bits (63), Expect = 1.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 121 RIINEPT-AAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 158
+ + EPT A LA L+ + + + + L GG D S
Sbjct: 272 KQVVEPTGALPLAAVLEHGARLPQTLALL-LSGGNRDFS 309
Score = 28.8 bits (63), Expect = 1.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 203 RIINEPT-AAALAYGLDKNLKGEKNVLIFDLGGGTFDVS 240
+ + EPT A LA L+ + + + + L GG D S
Sbjct: 272 KQVVEPTGALPLAAVLEHGARLPQTLALL-LSGGNRDFS 309
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
SK+DI+ +LA AE+ + E ++ + AK K
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQLEYAKGK 44
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 27.9 bits (61), Expect = 2.5
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
+ +++ +L A K KA+ +E K
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTGK 45
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 150
Score = 27.1 bits (59), Expect = 4.1
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 574
S ++ +L + K E+ K K
Sbjct: 15 HSTRELRYLLDLSRDLKRAKYTGTEQQHLKRK 46
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 27.6 bits (60), Expect = 4.5
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 315 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAP 349
+ L + + T ARFE +D R L P
Sbjct: 258 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 292
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 27.1 bits (59), Expect = 5.0
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKN 573
S+D+++ + A +KY + R+ ++ K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex
aeolicus [TaxId: 63363]}
Length = 180
Score = 27.1 bits (59), Expect = 5.7
Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 16/174 (9%)
Query: 224 EKNVLIFDLGGGTFDVSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFA--DEFKRK 281
E V + D GGG+ + + +V S +G + +E ++
Sbjct: 2 EGEVCVVDQGGGSTEYVF--GKGYKVREVIS----LPIGIVNLTETFFKQDPPTEEEVKR 55
Query: 282 HKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMD 341
+ + V++ T+++ + +T + ++
Sbjct: 56 FFEFLEKELSKVKKPVDTIVGLGGTITTLAALEYNVYPYDPQKVHGKVLTYGQIKKWFDT 115
Query: 342 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 395
ER+ +++ V++ G I + F L +S
Sbjct: 116 FKEIPSE--ERSKRFRQVEDR--RAKVILAGIG----IFLKTLEIFEKDCLIVS 161
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.6 bits (58), Expect = 5.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQ 565
LS+DD++ +LA A K KA +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 26.2 bits (58), Expect = 8.2
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 510 TFDLDANGILNVS--AKDSSTGKAERITIQNDK--GRLSKDDIDRMLAEAEKYKAEDD 563
A+G N+ + + G + +D + +Y E
Sbjct: 100 QMTFYASGKFNIDFYYDKNPFDTFLTRLAWQYEHFGTIPEDSFYK--ETLNEYLEEKA 155
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 27.0 bits (59), Expect = 8.5
Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 20/163 (12%)
Query: 7 LSVAMNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAP 66
+ + + + E++ I D+++ ++ DGG+ KI Y +K
Sbjct: 410 IHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQ 469
Query: 67 EEIS---SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAGSIAGLNVLRII 123
+ + S M++I E + K+ P R + + S+ + +
Sbjct: 470 ADHTYQMSRWTPYMKDIMEAAVEDKLDTR--HYPFLNGGGPRPSCQQPVSVRYGHWHKDK 527
Query: 124 NEPTAAALAYGLDKNLKGEKNVLIFDLGGGTFDVSMREIAEVY 166
+ + K ++IF +GG ++ E+ Y
Sbjct: 528 GQA-----------SYKSGPRLIIFVVGGISYS----EMRSAY 555
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 26.1 bits (57), Expect = 9.0
Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 543 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 602
+ ++I +L A+ +K + + K + + ++ + + +++
Sbjct: 15 YTAEEIWTILETAKMFKIWQKIGKPHRLLEGK------TLAMIFQKPSTRTRVSFEVAMA 68
Query: 603 QACSATLTWLEGNSLAEK-EEFEDRLKTLQQTCTPIMTKLHQAG 645
L + + E D + L + IM +++
Sbjct: 69 HLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHK 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,287,841
Number of extensions: 108722
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 43
Length of query: 655
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 564
Effective length of database: 1,158,166
Effective search space: 653205624
Effective search space used: 653205624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.0 bits)