BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3271
(781 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 315 bits (806), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 154/306 (50%), Positives = 198/306 (64%), Gaps = 40/306 (13%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 60
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 8 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 67
Query: 61 AVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVA 120
AV++ LHP A Y K+ L+RLVG+ML+++V++ A ++ V ++T
Sbjct: 68 AVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAET---------------- 111
Query: 121 IRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE 180
VGTGIMG++GNKGGVAIR H TS+C VNSHLAAH EE
Sbjct: 112 ---------------------VGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE 150
Query: 181 FERRNQDFHDIDSRIAFTG---FLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAG 237
+ERRNQD+ DI SR+ F LPP +I +HD I WLGDLNYRI +LD+ KVK LI
Sbjct: 151 YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK 210
Query: 238 KYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVL 297
+Q + +DQL Q A VF G+ EG + F+PTYKYD G+DDWD+SEK RAPAWCDR+L
Sbjct: 211 DFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRIL 270
Query: 298 YKGDGI 303
+KG I
Sbjct: 271 WKGKNI 276
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 8 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 67
Query: 363 AVTKSLHPGAAYQKICLVRLVGI 385
AV++ LHP A Y K+ L+RLVGI
Sbjct: 68 AVSEGLHPDAKYAKVKLIRLVGI 90
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 388 QVDYKSVPSLKISDHKPVMSLFNSDIRVI 416
Q+ Y+S +LK SDHKPV S+F+ +RV+
Sbjct: 278 QLSYQSHMALKTSDHKPVSSVFDIGVRVV 306
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 315 bits (806), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 154/306 (50%), Positives = 198/306 (64%), Gaps = 40/306 (13%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 60
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 5 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 64
Query: 61 AVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVA 120
AV++ LHP A Y K+ L+RLVG+ML+++V++ A ++ V ++T
Sbjct: 65 AVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAET---------------- 108
Query: 121 IRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE 180
VGTGIMG++GNKGGVAIR H TS+C VNSHLAAH EE
Sbjct: 109 ---------------------VGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE 147
Query: 181 FERRNQDFHDIDSRIAFTG---FLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAG 237
+ERRNQD+ DI SR+ F LPP +I +HD I WLGDLNYRI +LD+ KVK LI
Sbjct: 148 YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK 207
Query: 238 KYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVL 297
+Q + +DQL Q A VF G+ EG + F+PTYKYD G+DDWD+SEK RAPAWCDR+L
Sbjct: 208 DFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRIL 267
Query: 298 YKGDGI 303
+KG I
Sbjct: 268 WKGKNI 273
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 5 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 64
Query: 363 AVTKSLHPGAAYQKICLVRLVGI 385
AV++ LHP A Y K+ L+RLVGI
Sbjct: 65 AVSEGLHPDAKYAKVKLIRLVGI 87
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 388 QVDYKSVPSLKISDHKPVMSLFNSDIRVID 417
Q+ Y+S +LK SDHKPV S+F+ +RV++
Sbjct: 275 QLSYQSHMALKTSDHKPVSSVFDIGVRVVN 304
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 285 bits (729), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 218/368 (59%), Gaps = 21/368 (5%)
Query: 414 RVIDAVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQV 473
+V+D RYRKV E+ ++ +D++EN+FLP + + E VF+ ++F + Q + I+N GQV
Sbjct: 1 KVVDERRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV 60
Query: 474 PVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYD 533
P F FI K +DS YCK WL EP+ G++ P E D+ L+VYV K + +NSG+DKI D
Sbjct: 61 PCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIED 120
Query: 534 ILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSK------ 587
ILVLHL+ GKD F+T++G+Y S FG S+E L ++ P+R+V + KLI+LE
Sbjct: 121 ILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEK 180
Query: 588 --------DSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDT 639
D G S VPKEIW LVDHL+++ Q++LF+ PG+ E+ I + LDT
Sbjct: 181 SLLQMVPLDEGA-SERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDT 239
Query: 640 GSSDPLPGSVHSVAXXXXXXXXXTAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRN 699
+ +PGS HSVA EP+I Y ++ CL ++ +Q+I+ LP C RN
Sbjct: 240 SIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRN 299
Query: 700 VYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLXXXXXXXXXXARGKSQTQTQARRKA 759
V+ YL +FL+ELL +E N ++A IATLF + L AR QT + +R
Sbjct: 300 VFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLL---RPPPNLMAR---QTPSDRQRAI 353
Query: 760 NFVYHFLV 767
F+ FL+
Sbjct: 354 QFLLGFLL 361
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 193/333 (57%), Gaps = 21/333 (6%)
Query: 449 EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKC 508
E VF+ ++F + Q + I+N GQVP F FI K +DS YCK WL EP+ G++ P E
Sbjct: 12 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETV 71
Query: 509 DVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQL 568
D+ L+VYV K + +NSG+DKI DILVLHL+ GKD F+T++G+Y S FG S+E L ++
Sbjct: 72 DISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRM 131
Query: 569 NVPLRDVALGKLIELESSK--------------DSGTLSNTSYSVPKEIWFLVDHLYRHG 614
P+R+V + KLI+LE D G S VPKEIW LVDHL+++
Sbjct: 132 KRPIREVPVTKLIDLEEDSFLEKEKSLLQMVPLDEGA-SERPLQVPKEIWLLVDHLFKYA 190
Query: 615 LKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAXXXXXXXXXTAEPLIPYNMHP 674
Q++LF+ PG+ E+ I + LDT + +PGS HSVA EP+I Y ++
Sbjct: 191 CHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQ 250
Query: 675 ACLTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFL 734
CL ++ +Q+I+ LP C RNV+ YL +FL+ELL +E N ++A IATLF + L
Sbjct: 251 RCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLL 310
Query: 735 XXXXXXXXXXARGKSQTQTQARRKANFVYHFLV 767
AR QT + +R F+ FL+
Sbjct: 311 ---RPPPNLMAR---QTPSDRQRAIQFLLGFLL 337
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 157/307 (51%), Gaps = 47/307 (15%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDP-PHIYAIGFQEL-DLSKEAFLFNETLKEDEW 58
+++F+ ++N+NG S + L +WL P IY +GFQE+ L+ + + + K EW
Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84
Query: 59 LRAVTKSLH----PGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLG 114
V + L+ G Y ++ +LVG L++F +E+ + NV TG+
Sbjct: 85 ESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGL----- 139
Query: 115 NKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHL 174
GGV+ GNKG VAIR D T LCF+ SHL
Sbjct: 140 --GGVS------------------------------GNKGAVAIRFDYEDTGLCFITSHL 167
Query: 175 AAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLI 234
AA ++ R+ D+ I S + F +SI +HD + W GD NYRI+ L +V I
Sbjct: 168 AAGYTNYDERDHDYRTIASGLRFRR---GRSIFNHDYVVWFGDFNYRIS-LTYEEVVPCI 223
Query: 235 NAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCD 294
GK + E+DQL +Q G VF + E I F PTYK+D+GTD +D+S+K+R PAW D
Sbjct: 224 AQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTD 283
Query: 295 RVLYKGD 301
R+LY+G+
Sbjct: 284 RILYRGE 290
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTVDP-PHIYAIGFQEL-DLSKEAFLFNETLKEDEW 360
+++F+ ++N+NG S + L +WL P IY +GFQE+ L+ + + + K EW
Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84
Query: 361 LRAVTKSLH----PGAAYQKICLVRLVGIRQQVDYKS--VPSLK 398
V + L+ G Y ++ +LVG + K +PS+K
Sbjct: 85 ESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIK 128
>pdb|3QBT|B Chain B, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|D Chain D, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|F Chain F, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|H Chain H, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
Length = 140
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 94/134 (70%)
Query: 420 RYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF 479
RYRKV E+ ++ +D++EN+FLP + + E VF+ ++F + Q + I+N GQVP F F
Sbjct: 4 RYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSF 63
Query: 480 IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHL 539
I K +DS YCK WL EP+ G++ P E D+ L+VYV K + +NSG+DKI DILVLHL
Sbjct: 64 IPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHL 123
Query: 540 EGGKDLFITVTGSY 553
+ GKD F+T++G+Y
Sbjct: 124 DRGKDYFLTISGNY 137
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 147/323 (45%), Gaps = 75/323 (23%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTT----------TVDPPH-IYAIGFQELDLSKEAFLF 49
I VFIGTWN+ P +++ W T+ TV PH IY G QE + +L
Sbjct: 8 ISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWL- 66
Query: 50 NETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGI 109
+ LR K L Y+ I + L + + V V+ +H + ++
Sbjct: 67 -------DLLRGGLKEL-TDLDYRPIAMQSLWNIKVAVLVK---PEHENRIS-------- 107
Query: 110 MGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCF 169
+V++ +V TGI LGNKG V + + TS F
Sbjct: 108 --------------------------HVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGF 141
Query: 170 VNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHD------QIYWLGDLNYRIT 223
VN HL + E+ RRNQ++ DI ++ L + + D ++W GDLNYR+
Sbjct: 142 VNCHLTSGNEKTARRNQNYLDILRLLS----LGDRQLNAFDISLRFTHLFWFGDLNYRL- 196
Query: 224 DLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDD--- 280
D+D+ ++ N I+ +++ +L DQL + K VFL + E I F PTY+Y+ G+ D
Sbjct: 197 DMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYA 256
Query: 281 WDSSE----KNRAPAWCDRVLYK 299
W + + P+WCDR+L+K
Sbjct: 257 WHKQKPTGVRTNVPSWCDRILWK 279
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 301 DGIQVFIGTWNVNGQSPSCDLSDWLTT----------TVDPPH-IYAIGFQELDLSKEAF 349
D I VFIGTWN+ P +++ W T+ TV PH IY G QE + +
Sbjct: 6 DMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREW 65
Query: 350 L 350
L
Sbjct: 66 L 66
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 136 NVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRI 195
V TV T I+ ++ KG + I TS F+ SH + + R D+ +
Sbjct: 114 EVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQAL 173
Query: 196 AFTGFLPPKSIKD--------------HDQIYWLGDLNYRITDLDLTKVKNLINAG---K 238
P+++ D D+++W GD N+R++ T V L+ G
Sbjct: 174 VL-----PRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG-GRTVVDALLCQGLVVD 227
Query: 239 YQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLY 298
+L+HDQL R+ KG++F G++E IHF P+YK+D+G D +DS+ K R P++ DRVLY
Sbjct: 228 VPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLY 287
Query: 299 K 299
+
Sbjct: 288 R 288
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 332 PHIYAIGFQELDLSKEAFLFNETLKEDEWL-RAVTKSLHPGAAYQKICLVRLVGIRQQVD 390
P I+ + + D+ K+ + + + R + +S H G IC V
Sbjct: 253 PDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKG----DIC---------PVS 299
Query: 391 YKSVPSLKISDHKPVMSLFNSDIR 414
Y S P +K SDH+PV LF +R
Sbjct: 300 YSSCPGIKTSDHRPVYGLFRVKVR 323
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 154 GGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIY 213
GG+ ++ F S ++ E+ N + D+R+ ++ K D ++
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMSD--EDVTSTNTKYA-YDTRLDYS-----KKDDPSDFLF 167
Query: 214 WLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYK 273
W+GDLN R+ + + T K+L++ ++ DQL ++ + +F G+ E + F+PTYK
Sbjct: 168 WIGDLNVRV-ETNATHAKSLVDQNNIDGLMAFDQL-KKAKEQKLFDGWTEPQVTFKPTYK 225
Query: 274 YDVGTDDWDSSEKNRAPAWCDRVLYK 299
+ TD++D S P+W DR LYK
Sbjct: 226 FKPNTDEYDLSA---TPSWTDRALYK 248
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 606 LVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAXXXXXXXXXTAE 665
L DH++ GL F G + ++N +D G +A E
Sbjct: 94 LEDHIHTEGL-----FRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPE 148
Query: 666 PLIPYNMHPACLTASTSYVQAKQ---LIASLPLCSRNVYL--YLCSFLQELLSHAEENRL 720
P++P ++H A L A + K L+ S L V++ Y +FL+ + + EN++
Sbjct: 149 PILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKM 208
Query: 721 DAKTIATLFG 730
D+ +A +F
Sbjct: 209 DSSNLAVIFA 218
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 665 EPLIPYNMHPAC-----LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
EPL+ ++++P + S Q++ +LP + V +L +FL ++ +H+++N+
Sbjct: 130 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNK 189
Query: 720 LDAKTIATLFG 730
+ +A +FG
Sbjct: 190 MTNTNLAVVFG 200
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 665 EPLIPYNMHPAC-----LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
EPL+ ++++P + S Q++ +LP + V +L +FL ++ +H+++N+
Sbjct: 122 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNK 181
Query: 720 LDAKTIATLFG 730
+ +A +FG
Sbjct: 182 MTNTNLAVVFG 192
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 665 EPLIPYNMHPAC-----LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
EPL+ ++++P + S Q++ +LP + V +L +FL ++ +H+++N+
Sbjct: 91 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNK 150
Query: 720 LDAKTIATLFG 730
+ +A +FG
Sbjct: 151 MTNTNLAVVFG 161
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 665 EPLIPYNMHPAC-----LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
EPL+ ++++P + S Q++ +LP + V +L +FL ++ +H+++N+
Sbjct: 94 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNK 153
Query: 720 LDAKTIATLFG 730
+ +A +FG
Sbjct: 154 MTNTNLAVVFG 164
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 665 EPLIPYNMHPAC-----LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
EPL+ ++++P + S Q++ +LP + V +L +FL ++ +H+++N+
Sbjct: 95 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNK 154
Query: 720 LDAKTIATLFG 730
+ +A +FG
Sbjct: 155 MTNTNLAVVFG 165
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 649 VHSVAXXXXXXXXXTAEPLIPYNMHPACLTA------STSYVQAKQLIASLPLCSRNVYL 702
+H V EPL PY+ + A +T K L+ LP +R+
Sbjct: 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMK 148
Query: 703 YLCSFLQELLSHAEENRLDAKTIATLFGQIFL 734
L L ++++ A +N + +++ +FG L
Sbjct: 149 VLFGHLTKIVAKASKNLMSTQSLGIVFGPTLL 180
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 648 SVHSVAXXXXXXXXXTAEPLIPYNMHPACLTAS-----TSYVQA-KQLIASLPLCSRNVY 701
+V++VA +PLIPY++HP L A+ T + A K+++ + +V+
Sbjct: 89 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 148
Query: 702 LYLCSFLQELLSHAEENRLDAKTIATLF 729
Y+ + L + + N + A ++ F
Sbjct: 149 RYVITHLNRVSQQHKINLMTADNLSICF 176
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 648 SVHSVAXXXXXXXXXTAEPLIPYNMHPACLTAS-----TSYVQA-KQLIASLPLCSRNVY 701
+V++VA +PLIPY++HP L A+ T + A K+++ + +V+
Sbjct: 79 TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVF 138
Query: 702 LYLCSFLQELLSHAEENRLDAKTIATLF 729
Y+ + L + + N + A ++ F
Sbjct: 139 RYVITHLNRVSQQHKINLMTADNLSICF 166
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 666 PLIPYNMHPACLTASTSYVQAKQL------IASLPLCSRNVYLYLCSFLQELLSHAEENR 719
PLI Y+ +P + ++ +QL + LP YL + L+ + H +EN
Sbjct: 357 PLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 416
Query: 720 LDAKTIATLFGQIFL 734
++A+ + +FG +
Sbjct: 417 MNAENLGIVFGPTLM 431
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 666 PLIPYNMHPACLTASTSYVQAKQL------IASLPLCSRNVYLYLCSFLQELLSHAEENR 719
PLI Y+ +P + ++ +QL + LP YL + L+ + H +EN
Sbjct: 96 PLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 155
Query: 720 LDAKTIATLFGQIFL 734
++A+ + +FG +
Sbjct: 156 MNAENLGIVFGPTLM 170
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 599 VPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG---SVHSVAXX 655
+P I ++++ GL + ++ G SE+ ++ D + L +V++VA
Sbjct: 68 IPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127
Query: 656 XXXXXXXTAEPLIPYNMHPACLTA------STSYVQAKQLIASLPLCSRNVYLYLCSFLQ 709
+PL+PYNM + A K+++ P + V+ Y+ S L
Sbjct: 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLN 187
Query: 710 ELLSHAEENRLDAKTIATLF 729
++ + + N + ++ ++ F
Sbjct: 188 KVSHNNKVNLMTSENLSICF 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,438,315
Number of Sequences: 62578
Number of extensions: 998447
Number of successful extensions: 1889
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 39
length of query: 781
length of database: 14,973,337
effective HSP length: 106
effective length of query: 675
effective length of database: 8,340,069
effective search space: 5629546575
effective search space used: 5629546575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)