Query psy3271
Match_columns 781
No_of_seqs 480 out of 2712
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:48:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566|consensus 100.0 1.6E-81 3.4E-86 709.9 26.3 313 1-438 537-858 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 1.4E-74 2.9E-79 642.6 30.0 208 133-425 388-605 (621)
3 smart00128 IPPc Inositol polyp 100.0 9.4E-73 2E-77 609.7 28.3 297 1-417 3-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 2.9E-62 6.3E-67 520.6 18.2 305 1-429 30-344 (460)
5 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 6.3E-40 1.4E-44 337.9 18.6 213 546-768 1-219 (220)
6 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.2E-34 2.7E-39 292.7 19.4 184 558-767 1-195 (196)
7 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.1E-34 2.5E-39 293.4 18.1 179 558-769 1-190 (194)
8 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.3E-34 2.7E-39 294.0 17.8 180 558-768 1-200 (200)
9 cd04390 RhoGAP_ARHGAP22_24_25 100.0 1.4E-34 3E-39 294.2 17.9 185 556-769 1-195 (199)
10 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.1E-34 2.4E-39 291.6 16.8 177 556-767 1-187 (188)
11 cd04407 RhoGAP_myosin_IXB RhoG 100.0 3E-34 6.4E-39 287.9 18.3 177 558-767 1-185 (186)
12 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 2.1E-34 4.5E-39 289.3 16.4 183 558-768 1-187 (187)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 4.7E-34 1E-38 287.3 18.0 158 558-741 1-168 (187)
14 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 9.1E-34 2E-38 291.4 19.1 197 555-777 2-218 (220)
15 cd04406 RhoGAP_myosin_IXA RhoG 100.0 5.8E-34 1.3E-38 285.8 16.8 175 558-765 1-183 (186)
16 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 8.8E-34 1.9E-38 292.9 18.1 173 557-740 1-201 (225)
17 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.1E-33 2.4E-38 289.3 18.2 180 558-767 1-210 (211)
18 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.1E-33 2.4E-38 290.8 18.2 199 557-777 1-209 (216)
19 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.8E-33 3.9E-38 286.2 19.3 186 558-767 1-204 (207)
20 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.1E-33 2.3E-38 286.0 17.5 160 556-742 1-171 (195)
21 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 1.3E-33 2.9E-38 287.5 18.2 181 558-768 1-203 (203)
22 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.6E-33 5.7E-38 282.4 18.2 180 556-768 1-189 (189)
23 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 2.9E-33 6.4E-38 282.7 17.4 156 557-740 1-163 (192)
24 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 5.5E-33 1.2E-37 282.5 18.7 193 557-777 1-199 (202)
25 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 3.4E-33 7.3E-38 280.3 16.6 155 558-739 1-164 (185)
26 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 7.6E-33 1.6E-37 282.2 18.5 184 555-769 2-195 (203)
27 cd04377 RhoGAP_myosin_IX RhoGA 100.0 1E-32 2.3E-37 277.3 18.5 177 558-767 1-185 (186)
28 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.3E-32 2.8E-37 278.9 18.5 183 554-769 2-191 (195)
29 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.2E-32 2.7E-37 282.3 18.5 197 558-777 1-211 (213)
30 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 7E-33 1.5E-37 277.4 15.8 157 558-736 1-164 (182)
31 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 7.1E-32 1.5E-36 273.6 18.1 182 557-770 1-193 (196)
32 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 5.5E-32 1.2E-36 273.8 17.2 175 558-769 1-188 (192)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 9.3E-32 2E-36 271.1 18.7 171 594-770 12-190 (193)
34 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 8.5E-32 1.8E-36 274.1 18.0 180 597-777 7-204 (206)
35 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.7E-31 3.6E-36 268.3 17.6 168 596-775 12-190 (200)
36 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.8E-31 3.9E-36 269.3 16.3 160 557-737 1-173 (190)
37 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 9.7E-31 2.1E-35 262.4 18.3 161 597-768 13-183 (184)
38 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.6E-30 5.6E-35 263.6 15.7 167 602-776 12-199 (208)
39 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 8.8E-30 1.9E-34 258.4 16.1 161 599-767 28-202 (203)
40 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 1.6E-29 3.4E-34 258.6 16.4 178 558-770 1-205 (212)
41 PTZ00312 inositol-1,4,5-tripho 100.0 3E-29 6.6E-34 254.8 10.5 118 149-273 64-218 (356)
42 smart00324 RhoGAP GTPase-activ 100.0 9.3E-28 2E-32 239.0 17.7 163 598-768 2-173 (174)
43 cd00159 RhoGAP RhoGAP: GTPase- 99.9 1.3E-26 2.7E-31 229.1 17.6 160 600-767 1-168 (169)
44 KOG2200|consensus 99.9 6E-26 1.3E-30 248.3 14.7 196 555-776 298-513 (674)
45 PF00620 RhoGAP: RhoGAP domain 99.9 9.1E-26 2E-30 219.2 11.1 140 600-739 1-149 (151)
46 KOG4269|consensus 99.9 7.8E-25 1.7E-29 247.5 12.2 174 597-771 917-1102(1112)
47 KOG1450|consensus 99.9 2.1E-24 4.7E-29 243.3 15.0 182 555-770 454-645 (650)
48 KOG4270|consensus 99.9 2.1E-24 4.7E-29 243.1 14.1 210 505-738 94-313 (577)
49 KOG4407|consensus 99.9 1.7E-24 3.8E-29 250.1 12.5 169 595-770 1170-1351(1973)
50 KOG0565|consensus 99.9 3.8E-23 8.3E-28 199.8 12.3 139 71-246 2-145 (145)
51 KOG4406|consensus 99.9 5.9E-23 1.3E-27 217.8 10.2 190 556-778 252-450 (467)
52 KOG2710|consensus 99.9 2.2E-22 4.9E-27 218.7 14.2 184 594-777 89-295 (412)
53 KOG1117|consensus 99.9 2.6E-22 5.7E-27 225.9 13.4 191 531-738 676-876 (1186)
54 KOG3564|consensus 99.9 4E-21 8.7E-26 205.6 16.0 148 595-743 358-513 (604)
55 KOG1453|consensus 99.8 1.5E-20 3.3E-25 228.0 14.0 161 557-743 602-776 (918)
56 KOG1451|consensus 99.8 1.5E-19 3.3E-24 197.1 9.6 138 601-738 390-540 (812)
57 KOG1976|consensus 99.8 1.1E-19 2.4E-24 185.2 6.8 145 150-302 154-351 (391)
58 KOG1452|consensus 99.7 1.4E-17 3.1E-22 170.5 9.7 158 556-739 183-354 (442)
59 KOG0566|consensus 99.7 3.5E-17 7.6E-22 188.0 7.8 158 299-459 533-727 (1080)
60 KOG4271|consensus 99.6 1.1E-15 2.3E-20 175.2 6.1 138 597-734 930-1076(1100)
61 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 1E-13 2.2E-18 138.9 16.1 144 600-743 7-171 (198)
62 KOG4724|consensus 99.5 3E-15 6.6E-20 166.8 4.0 201 544-781 69-276 (741)
63 smart00128 IPPc Inositol polyp 99.4 1.9E-12 4.1E-17 140.5 9.5 160 302-462 2-197 (310)
64 cd04405 RhoGAP_BRCC3-like RhoG 99.3 8.3E-12 1.8E-16 126.3 12.4 162 599-777 37-232 (235)
65 TIGR03395 sphingomy sphingomye 99.1 3.5E-09 7.5E-14 113.7 16.9 123 150-304 118-247 (283)
66 PRK05421 hypothetical protein; 99.0 1.4E-08 3.1E-13 108.0 17.2 59 152-220 134-193 (263)
67 PLN03191 Type I inositol-1,4,5 98.9 8.7E-10 1.9E-14 125.1 3.8 80 291-371 95-179 (621)
68 PRK11756 exonuclease III; Prov 98.9 1.8E-08 3.9E-13 107.4 12.9 65 152-223 88-157 (268)
69 COG5411 Phosphatidylinositol 5 98.9 4.5E-09 9.8E-14 114.2 7.9 157 301-460 28-220 (460)
70 PF03372 Exo_endo_phos: Endonu 98.8 2.3E-09 5E-14 110.1 4.8 64 151-224 108-171 (249)
71 PF14874 PapD-like: Flagellar- 98.8 6.1E-08 1.3E-12 87.8 11.9 100 440-552 1-100 (102)
72 KOG3565|consensus 98.7 2.4E-08 5.2E-13 116.5 9.2 148 595-743 214-372 (640)
73 KOG4370|consensus 98.7 2.2E-08 4.8E-13 107.4 7.2 139 595-733 67-253 (514)
74 TIGR00633 xth exodeoxyribonucl 98.6 8E-07 1.7E-11 93.6 13.9 36 3-42 1-38 (255)
75 PF08101 DUF1708: Domain of un 98.4 1.1E-05 2.4E-10 90.0 16.9 143 599-741 8-171 (420)
76 TIGR00195 exoDNase_III exodeox 98.3 6.9E-06 1.5E-10 86.8 14.4 36 3-42 1-37 (254)
77 PRK13911 exodeoxyribonuclease 98.3 7.2E-06 1.6E-10 86.6 14.1 37 3-43 1-39 (250)
78 PTZ00297 pantothenate kinase; 98.0 0.00012 2.7E-09 93.7 18.9 69 150-220 130-206 (1452)
79 PLN03144 Carbon catabolite rep 98.0 8.3E-05 1.8E-09 86.9 15.2 63 166-238 418-480 (606)
80 smart00476 DNaseIc deoxyribonu 98.0 0.00012 2.6E-09 78.1 14.4 58 155-223 129-190 (276)
81 COG0708 XthA Exonuclease III [ 97.9 5.5E-05 1.2E-09 79.2 10.1 36 4-43 2-38 (261)
82 COG3568 ElsH Metal-dependent h 97.9 0.00031 6.6E-09 73.6 15.4 60 152-223 118-178 (259)
83 KOG3873|consensus 97.7 0.00018 3.9E-09 77.0 10.4 172 2-231 8-192 (422)
84 KOG2756|consensus 97.5 0.00035 7.6E-09 71.9 9.0 61 158-223 197-257 (349)
85 KOG4724|consensus 97.2 0.00025 5.4E-09 80.9 3.5 159 553-738 412-590 (741)
86 PRK15251 cytolethal distending 96.9 0.013 2.8E-07 62.0 12.6 59 151-223 140-198 (271)
87 KOG2338|consensus 96.8 0.0033 7.1E-08 70.5 8.4 72 153-228 237-311 (495)
88 PF00635 Motile_Sperm: MSP (Ma 96.8 0.0062 1.3E-07 55.4 8.4 66 443-515 2-68 (109)
89 KOG1449|consensus 91.1 0.081 1.7E-06 60.2 0.7 70 705-774 1-70 (670)
90 KOG1449|consensus 89.1 0.042 9.1E-07 62.4 -3.4 128 596-743 222-360 (670)
91 PF06280 DUF1034: Fn3-like dom 87.7 3.8 8.2E-05 37.6 9.1 68 450-519 1-83 (112)
92 PF07610 DUF1573: Protein of u 85.7 2.5 5.3E-05 32.2 5.5 43 465-513 2-44 (45)
93 PF14529 Exo_endo_phos_2: Endo 85.2 1.9 4.2E-05 39.1 5.8 13 211-223 32-44 (119)
94 PF00345 PapD_N: Pili and flag 85.2 6 0.00013 36.7 9.1 68 443-515 2-72 (122)
95 KOG0439|consensus 85.0 2.6 5.6E-05 43.5 7.2 63 442-512 8-72 (218)
96 KOG1453|consensus 85.0 0.57 1.2E-05 58.5 2.8 142 597-738 478-669 (918)
97 KOG4271|consensus 82.5 1.3 2.8E-05 53.4 4.1 145 598-742 370-543 (1100)
98 KOG0565|consensus 81.3 0.88 1.9E-05 43.8 1.9 32 100-131 31-62 (145)
99 PF04744 Monooxygenase_B: Mono 76.3 18 0.00039 40.0 10.0 105 450-556 251-379 (381)
100 PF10633 NPCBM_assoc: NPCBM-as 75.5 14 0.00031 31.3 7.5 56 459-521 5-65 (78)
101 COG5066 SCS2 VAMP-associated p 73.7 19 0.00042 36.6 8.7 62 457-524 15-77 (242)
102 PF14646 MYCBPAP: MYCBP-associ 73.5 8.8 0.00019 44.0 7.4 57 459-515 247-310 (426)
103 PF07705 CARDB: CARDB; InterP 59.3 29 0.00062 30.2 6.4 70 441-517 2-72 (101)
104 COG3021 Uncharacterized protei 58.9 17 0.00036 39.5 5.4 59 151-220 173-233 (309)
105 PRK09918 putative fimbrial cha 52.9 40 0.00086 35.2 7.0 68 441-514 24-92 (230)
106 COG0832 UreB Urea amidohydrola 44.2 49 0.0011 29.7 5.0 71 453-525 11-94 (106)
107 PF07703 A2M_N_2: Alpha-2-macr 44.0 33 0.00071 32.1 4.4 65 493-557 1-66 (136)
108 PRK13911 exodeoxyribonuclease 43.5 6.2 0.00013 41.8 -0.8 40 306-349 2-43 (250)
109 TIGR03079 CH4_NH3mon_ox_B meth 41.1 1.3E+02 0.0028 33.5 8.6 102 450-555 270-397 (399)
110 KOG4370|consensus 36.0 45 0.00098 37.4 4.3 32 648-679 119-150 (514)
111 PF03173 CHB_HEX: Putative car 35.2 78 0.0017 31.3 5.5 57 459-515 30-103 (164)
112 PRK15211 fimbrial chaperone pr 33.1 1.8E+02 0.004 30.3 8.2 69 441-514 22-91 (229)
113 PRK13202 ureB urease subunit b 33.0 92 0.002 28.2 5.0 72 453-524 11-94 (104)
114 PRK15295 fimbrial assembly cha 31.2 2.1E+02 0.0044 29.9 8.2 70 441-514 19-89 (226)
115 PRK15208 long polar fimbrial c 28.7 2.3E+02 0.0051 29.5 8.1 67 441-513 21-89 (228)
116 PF04442 CtaG_Cox11: Cytochrom 28.4 1.9E+02 0.0041 28.3 6.7 24 500-523 111-134 (152)
117 PRK09926 putative chaperone pr 28.2 2.2E+02 0.0047 30.1 7.9 71 440-514 24-98 (246)
118 PF05506 DUF756: Domain of unk 27.2 1.5E+02 0.0032 25.8 5.4 45 462-514 21-65 (89)
119 cd00407 Urease_beta Urease bet 26.3 1.3E+02 0.0028 27.2 4.8 63 461-525 20-94 (101)
120 TIGR00192 urease_beta urease, 26.1 1.4E+02 0.003 27.0 4.9 63 461-525 20-94 (101)
121 PF00927 Transglut_C: Transglu 26.1 2E+02 0.0043 25.7 6.3 59 453-515 9-75 (107)
122 PRK13201 ureB urease subunit b 25.8 2E+02 0.0044 27.3 6.1 84 461-546 20-116 (136)
123 PF11614 FixG_C: IG-like fold 25.6 3.1E+02 0.0067 25.0 7.6 55 462-522 34-90 (118)
124 PRK15274 putative periplasmic 25.0 2.5E+02 0.0055 29.9 7.6 81 441-526 26-115 (257)
125 PRK15224 pili assembly chapero 24.9 3.1E+02 0.0066 28.9 8.1 81 439-525 26-112 (237)
126 COG5239 CCR4 mRNA deadenylase, 24.5 39 0.00085 37.3 1.5 52 2-64 30-97 (378)
127 PRK15249 fimbrial chaperone pr 23.9 3E+02 0.0064 29.2 8.0 71 441-515 28-103 (253)
128 PF13473 Cupredoxin_1: Cupredo 23.6 1.4E+02 0.0031 26.6 4.8 52 448-513 30-81 (104)
129 PRK13203 ureB urease subunit b 23.5 1.7E+02 0.0036 26.6 4.9 63 461-525 20-94 (102)
130 COG3175 COX11 Cytochrome oxida 23.5 1.2E+02 0.0026 30.4 4.4 24 499-522 136-159 (195)
131 PRK15253 putative fimbrial ass 23.2 2.6E+02 0.0056 29.5 7.3 82 441-526 33-123 (242)
132 cd05751 Ig1_LILRB1_like First 23.1 32 0.0007 29.9 0.4 26 490-516 2-27 (91)
133 PRK15188 fimbrial chaperone pr 22.6 3.9E+02 0.0083 28.0 8.3 68 441-514 27-96 (228)
134 PRK15285 putative fimbrial cha 22.5 2.8E+02 0.0061 29.4 7.4 81 441-526 25-114 (250)
135 PRK15246 fimbrial assembly cha 22.5 3.9E+02 0.0084 28.0 8.4 81 441-525 10-100 (233)
136 PRK15299 fimbrial chaperone pr 21.4 4E+02 0.0087 27.7 8.2 70 441-514 22-93 (227)
137 PF06483 ChiC: Chitinase C; I 21.2 2.5E+02 0.0055 28.1 6.2 72 443-516 38-142 (180)
138 COG1470 Predicted membrane pro 21.0 1.8E+02 0.004 33.4 5.8 70 459-552 397-468 (513)
139 PRK15233 putative fimbrial cha 20.6 4.5E+02 0.0098 27.8 8.4 79 441-525 40-124 (246)
140 PRK13205 ureB urease subunit b 20.6 2.9E+02 0.0064 26.8 6.2 82 461-544 20-114 (162)
141 PF06030 DUF916: Bacterial pro 20.3 4E+02 0.0088 24.8 7.2 64 455-519 23-106 (121)
142 PF08626 TRAPPC9-Trs120: Trans 20.3 2.1E+02 0.0045 37.5 7.0 56 459-515 799-878 (1185)
No 1
>KOG0566|consensus
Probab=100.00 E-value=1.6e-81 Score=709.85 Aligned_cols=313 Identities=43% Similarity=0.759 Sum_probs=294.6
Q ss_pred CEEEEEEeecCCCCCC--CCchhhhcCC--C---CCCcEEEEecccc-CCChhhhhccCCchHHHHHHHHHhhcCC-CCc
Q psy3271 1 IQVFIGTWNVNGQSPS--CDLSDWLTTT--V---DPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLHP-GAA 71 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~--~~l~~wl~~~--~---~~~Di~vig~QE~-~~~~~~~~~~~~~~~~~w~~~i~~~l~~-~~~ 71 (781)
|+|+||||||||+.+. .+|.+||.+. . .++|||||||||+ ++++.+++..++.+.+.|++.|.++|+. +.+
T Consensus 537 i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~~~Wee~i~~~Ln~~~~k 616 (1080)
T KOG0566|consen 537 ISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKRRFWEEKILKTLNRYKNK 616 (1080)
T ss_pred eEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChHHHHHHHHHHHHHhcCCCCc
Confidence 6899999999995544 6899999864 2 3699999999998 8999999998999999999999999987 789
Q ss_pred eEEEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccc
Q psy3271 72 YQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLG 151 (781)
Q Consensus 72 Y~~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~g 151 (781)
|+++.+.||+|++|++|+|.++++ +|++|..++++||++|..|
T Consensus 617 YvlL~s~QlvGv~L~iF~r~~~~p-------------------------------------~Ik~V~~~tkKTGfGG~tg 659 (1080)
T KOG0566|consen 617 YVLLRSEQLVGVCLLLFIRPDHAP-------------------------------------YIKDVAGDTKKTGFGGATG 659 (1080)
T ss_pred eEEEehhhhheeeEEEEEcccccc-------------------------------------hhhhcccceeecccccccC
Confidence 999999999999999999999999 9999999999999999999
Q ss_pred cCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHHHHH
Q psy3271 152 NKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVK 231 (781)
Q Consensus 152 nKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~ 231 (781)
|||||||||.+++|+|||||+||||++.++++||.||.+|.++++|+. ...|.+||+|||||||||||+ +++++|+
T Consensus 660 NKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~---Gr~I~~HD~ifW~GDFNYRI~-l~nEEVr 735 (1080)
T KOG0566|consen 660 NKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPR---GRMIFSHDYIFWLGDFNYRID-LSNEEVR 735 (1080)
T ss_pred CCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccC---CccccCCceEEEecccceeec-CCHHHHH
Confidence 999999999999999999999999999999999999999999999983 467999999999999999999 9999999
Q ss_pred HHHhcCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCCeeEEeeeec
Q psy3271 232 NLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWN 311 (781)
Q Consensus 232 ~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~~~~~~gt~n 311 (781)
+++.+++|+.|+++|||++||.+|.+|.||.|++|+|+||||||.||++||||+|+|+|||||||||+++...
T Consensus 736 ~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDTSeK~R~PAWTDRIL~r~e~~~------- 808 (1080)
T KOG0566|consen 736 RLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDTSEKCRTPAWTDRILWRGEKLE------- 808 (1080)
T ss_pred HHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccccchhccCccchhhheecccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred cCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccceeeeee
Q psy3271 312 VNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVDY 391 (781)
Q Consensus 312 v~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~~~~~~y 391 (781)
.+.|
T Consensus 809 ----------------------------------------------------------------------------~l~Y 812 (1080)
T KOG0566|consen 809 ----------------------------------------------------------------------------LLSY 812 (1080)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 6679
Q ss_pred ccCCCccccCCcceEEEEEeeeeecCHHHHHHHHHHHHHHhhhhccc
Q psy3271 392 KSVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENE 438 (781)
Q Consensus 392 ~s~~~~~~SDHkPV~a~f~~~~~~v~~~~~~~~~~e~~~~~~~~e~~ 438 (781)
.++ .+..||||||.|.|++++..||.++|.++++|+...+....+.
T Consensus 813 ~~~-el~~SDHRPV~A~~~a~i~~Vd~~kk~~l~eev~~~~~~~d~t 858 (1080)
T KOG0566|consen 813 KRA-ELKTSDHRPVYAIFRAEIFEVDEQKKLRLFEEVKERLGPPDGT 858 (1080)
T ss_pred ccc-cccccCCCceEEEEEEEEEEEcHHHHHHHHHHHHHHcCCCCCc
Confidence 887 4999999999999999999999999999999999887655443
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.4e-74 Score=642.64 Aligned_cols=208 Identities=42% Similarity=0.834 Sum_probs=193.1
Q ss_pred cceeeEeeeeecccccccccCceEEEEEEecCeEEEEEEecCCCCcch--HHHHHhhHHHHHHhcCcCC---CCCCCCCC
Q psy3271 133 HVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE--FERRNQDFHDIDSRIAFTG---FLPPKSIK 207 (781)
Q Consensus 133 ~i~~v~~~~v~~G~~g~~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~--~~~Rn~d~~~I~~~l~f~~---~~~~~~i~ 207 (781)
+|++|++++|+||+||++||||||+|||++++++|||||||||||+++ .++||+||.+|++++.|.. ...+..|.
T Consensus 388 ~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~ 467 (621)
T PLN03191 388 HINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIP 467 (621)
T ss_pred hcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCcccc
Confidence 999999999999999999999999999999999999999999998754 6899999999999999973 22345788
Q ss_pred CCcceeEecccCCcccCCCHHHHHHHHhcCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcC-----
Q psy3271 208 DHDQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWD----- 282 (781)
Q Consensus 208 ~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd----- 282 (781)
+||++||||||||||+ ++++++++++++++|+.||++|||+++++++++|.||.|++|+|+|||||+.|++.||
T Consensus 468 dhD~vFWlGDLNYRId-l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~ 546 (621)
T PLN03191 468 SHDQIFWFGDLNYRLN-MLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPK 546 (621)
T ss_pred ccceEEEecCcccccc-CCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccc
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcCCcccccceeccCCeeEEeeeeccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHH
Q psy3271 283 SSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362 (781)
Q Consensus 283 ~~~k~R~PswcDRIL~~~~~~~~~~gt~nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~ 362 (781)
+++|+|+|||||||||++..+.
T Consensus 547 Ts~KkR~PSWCDRILykg~~i~---------------------------------------------------------- 568 (621)
T PLN03191 547 EGEKKRSPAWCDRILWLGKGIK---------------------------------------------------------- 568 (621)
T ss_pred cccCccccchhheEeecCCCce----------------------------------------------------------
Confidence 7899999999999999876555
Q ss_pred hhhhcCCCCcchhhhhhheeccceeeeeeccCCCccccCCcceEEEEEeeeeecCHHHHHHHH
Q psy3271 363 AVTKSLHPGAAYQKICLVRLVGIRQQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVH 425 (781)
Q Consensus 363 ~~~~~l~~~~~y~~~~~~~l~g~~~~~~y~s~~~~~~SDHkPV~a~f~~~~~~v~~~~~~~~~ 425 (781)
++.|.++ .+..||||||+|.|.++++++++++.++++
T Consensus 569 -------------------------~l~Y~s~-ei~~SDHRPV~A~F~v~V~~id~~k~q~~~ 605 (621)
T PLN03191 569 -------------------------QLCYKRS-EIRLSDHRPVSSMFLVEVEVFDHRKLQRAL 605 (621)
T ss_pred -------------------------EeEeccC-CcccCCchhcceEEEEEEEecCHHHHHhhh
Confidence 6779884 789999999999999999999999887765
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=9.4e-73 Score=609.69 Aligned_cols=297 Identities=44% Similarity=0.800 Sum_probs=268.7
Q ss_pred CEEEEEEeecCCCC--CCCCchhhhcCC-----CCCCcEEEEecccc-CCChhhhhccCCchHHHHHHHHHhhcCCCCce
Q psy3271 1 IQVFIGTWNVNGQS--PSCDLSDWLTTT-----VDPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAY 72 (781)
Q Consensus 1 ~~i~v~TwNv~~~~--p~~~l~~wl~~~-----~~~~Di~vig~QE~-~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y 72 (781)
++|+|+|||||++. |+++|.+||... ...||||||||||+ ++.+.+++...+.....|.+.+..+|+.+..|
T Consensus 3 ~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y 82 (310)
T smart00128 3 IKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQY 82 (310)
T ss_pred eEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCce
Confidence 68999999999974 678999999752 26799999999999 78888887777788899999999999866789
Q ss_pred EEEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeeccccccccc
Q psy3271 73 QKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGN 152 (781)
Q Consensus 73 ~~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gn 152 (781)
.++++.+|+||+++||+|.++.+ +|+++.++++++|++|.+||
T Consensus 83 ~~v~~~~l~gi~l~vf~~~~~~~-------------------------------------~i~~v~~~~v~~G~~~~~~n 125 (310)
T smart00128 83 NVLAKVRLVGILVLVFVKANHLV-------------------------------------YIKDVETFTVKTGMGGLWGN 125 (310)
T ss_pred EEEeeeeecceEEEEEEehhhcC-------------------------------------ccceeEeeeeeccccceeec
Confidence 99999999999999999999998 89999999999999999999
Q ss_pred CceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCH-HHHH
Q psy3271 153 KGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDL-TKVK 231 (781)
Q Consensus 153 KG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~-~~v~ 231 (781)
||||+++|.+.++++|||||||+||+.++++||+||.+|++++.|+.. ....+.+||++||||||||||+ +++ ++++
T Consensus 126 KG~v~i~~~~~~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~-~~~~~~~~d~~f~~GDlNyRi~-~~~~~~v~ 203 (310)
T smart00128 126 KGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPER-AELSQFDHDVVFWFGDLNFRLD-SPSYEEVR 203 (310)
T ss_pred CceEEEEEEEcCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCC-ccccccccceEEEecCcceeec-CCCHHHHH
Confidence 999999999999999999999999999999999999999999999832 1223578999999999999999 555 8999
Q ss_pred HHHhcCChhhhhchhHHHHHHHcCCcccCCccccccccCccccc-CCCCCcCCCCCCcCCcccccceeccCCeeEEeeee
Q psy3271 232 NLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYD-VGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTW 310 (781)
Q Consensus 232 ~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~-~~~~~yd~~~k~R~PswcDRIL~~~~~~~~~~gt~ 310 (781)
++++.++|+.||++|||+.+++++++|.||.|++|+|||||||+ .|++.||+++|+|+|||||||||+.....
T Consensus 204 ~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd~~~k~R~PsWcDRIL~~~~~~~------ 277 (310)
T smart00128 204 RKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGTETYDTSEKKRVPAWCDRILYRSNGPN------ 277 (310)
T ss_pred HHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCCccccCcccccCcchhheehhhccCCC------
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999862211
Q ss_pred ccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccceeeee
Q psy3271 311 NVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVD 390 (781)
Q Consensus 311 nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~~~~~~ 390 (781)
+ ..+.
T Consensus 278 --------------------------------------------------------------------------~-~~~~ 282 (310)
T smart00128 278 --------------------------------------------------------------------------L-IQLS 282 (310)
T ss_pred --------------------------------------------------------------------------c-eecc
Confidence 0 0233
Q ss_pred -eccCCCccccCCcceEEEEEeeeeecC
Q psy3271 391 -YKSVPSLKISDHKPVMSLFNSDIRVID 417 (781)
Q Consensus 391 -y~s~~~~~~SDHkPV~a~f~~~~~~v~ 417 (781)
|.+++.+..||||||+|.|.+.+..++
T Consensus 283 ~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 283 EYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred cccCCCccCCcCcccccEEEEEEEEecC
Confidence 889999999999999999999998764
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-62 Score=520.60 Aligned_cols=305 Identities=38% Similarity=0.668 Sum_probs=279.3
Q ss_pred CEEEEEEeecCCCCCCCCchhhhcCC---CCCCcEEEEecccc-CCChhhhhccC-CchHHHHHHHHHhhcC---CCCce
Q psy3271 1 IQVFIGTWNVNGQSPSCDLSDWLTTT---VDPPHIYAIGFQEL-DLSKEAFLFNE-TLKEDEWLRAVTKSLH---PGAAY 72 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~~~l~~wl~~~---~~~~Di~vig~QE~-~~~~~~~~~~~-~~~~~~w~~~i~~~l~---~~~~Y 72 (781)
+++|++|+|.+++.+..++..||.+. -..+|+||+||||+ .+++..++..+ ..+...|++.+...|+ .+.+|
T Consensus 30 ~~~f~~~~n~~~~~~k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~rl~~wes~~~~~Ln~~~~~eky 109 (460)
T COG5411 30 VSIFVSTFNPPGKPPKASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDRLRIWESKVLDCLNGAQSDEKY 109 (460)
T ss_pred eeeEeccccCCCCCchhhhhhhcccccccccccceEEeccceeeeccchhhccCCcccccchhHHHHHHHhcccccCCce
Confidence 47999999999999988999999872 25799999999998 67777777666 5667899999999998 46789
Q ss_pred EEEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeeccccccccc
Q psy3271 73 QKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGN 152 (781)
Q Consensus 73 ~~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gn 152 (781)
.++.+.||+|+.+.||++.+.++ .+..|.++.-+||++|..+|
T Consensus 110 ~~l~s~q~~~~~~~vf~~~~~~~-------------------------------------v~~~V~~~~~KtG~gg~s~n 152 (460)
T COG5411 110 SLLRSPQLGGILLRVFSLATNLP-------------------------------------VVKPVSGTVKKTGFGGSSSN 152 (460)
T ss_pred EEecchhccCcceEEeeeccccc-------------------------------------eeccccccccccccceeccc
Confidence 99999999999999999999988 78899999999999999999
Q ss_pred CceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHHHHHH
Q psy3271 153 KGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKN 232 (781)
Q Consensus 153 KG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~ 232 (781)
||+|++++.+..+++||||||||||.++.++|+.||+.|.+.+.|.+ ...|.+||++||+|||||||+ .++++++.
T Consensus 153 KGav~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~---g~~I~~hdti~w~GDlNyRVt-s~~e~v~~ 228 (460)
T COG5411 153 KGAVAIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSR---GLRIYDHDTIFWLGDLNYRVT-STNEEVRP 228 (460)
T ss_pred ccccceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCC---CceecccceEEEecccCceee-cCchhcch
Confidence 99999999999999999999999999999999999999999999983 467999999999999999999 78899998
Q ss_pred HHhcCC--hhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCCeeEEeeee
Q psy3271 233 LINAGK--YQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTW 310 (781)
Q Consensus 233 ~i~~~~--~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~~~~~~gt~ 310 (781)
.+..++ +++|+++|||..+++.+++|.+|+|..|+|||||||+.||++||+++|.|+|||||||||++...+
T Consensus 229 ~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydtsdk~RiPsWtDRIl~~s~~~~------ 302 (460)
T COG5411 229 EIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDTSDKGRIPSWTDRILYKSEQLT------ 302 (460)
T ss_pred hhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCccccccccccCCchhhhhhhhccccc------
Confidence 887766 888999999999999999999999999999999999999999999999999999999999886544
Q ss_pred ccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccceeeee
Q psy3271 311 NVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVD 390 (781)
Q Consensus 311 nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~~~~~~ 390 (781)
...
T Consensus 303 -----------------------------------------------------------------------------p~s 305 (460)
T COG5411 303 -----------------------------------------------------------------------------PHS 305 (460)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 456
Q ss_pred eccCCCccccCCcceEEEEEeeeeecCHHHHHHHHHHHH
Q psy3271 391 YKSVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVM 429 (781)
Q Consensus 391 y~s~~~~~~SDHkPV~a~f~~~~~~v~~~~~~~~~~e~~ 429 (781)
|++..++.+||||||+|.|.+.+..+|+.++....+.+.
T Consensus 306 Y~sip~l~~SDHrPV~a~~~~~i~~~d~~~k~~~~~~l~ 344 (460)
T COG5411 306 YSSIPHLMISDHRPVYATFRAKIKVVDPSKKEGLIEKLY 344 (460)
T ss_pred ccccCceeecCCCeEEEEEecceEEeCcchhhhhhhhhh
Confidence 999888999999999999999999999998877776665
No 5
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=6.3e-40 Score=337.87 Aligned_cols=213 Identities=49% Similarity=0.787 Sum_probs=190.8
Q ss_pred EEEeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccC
Q psy3271 546 FITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPG 625 (781)
Q Consensus 546 FI~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G 625 (781)
||+|+|.|.|||||.||++|+++++|++..+...+.. .+.......+..||++|++|++||+++|+++|||||.+|
T Consensus 1 FI~v~~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G 76 (220)
T cd04380 1 FITVTGVYLPSCFGSSLETLIRLPDPGIRNLIDQLEL----GDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPG 76 (220)
T ss_pred CeeEeeeEecccccccHHHHhcCCchHhhcccccccc----ccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCC
Confidence 8999999999999999999999999998887655521 112235667889999999999999999999999999999
Q ss_pred CHHH----HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHH-hhHHHHHHHhh-cCCHHHHH
Q psy3271 626 LPSE----ILLIRNWLDTGSSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAS-TSYVQAKQLIA-SLPLCSRN 699 (781)
Q Consensus 626 ~~~~----v~~lr~~ld~g~~~~~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~-~~~~~~~~ll~-~LP~~n~~ 699 (781)
+... ++++++.+|+|.......++|++|++||.|||+|||||||+++|+.++++. .+.+.++++++ +||+.|++
T Consensus 77 ~~~~~~~~i~~l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~ 156 (220)
T cd04380 77 LPSEPGELLAEIRDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRN 156 (220)
T ss_pred cccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHH
Confidence 9999 999999999998766556999999999999999999999999999999984 56778999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 700 VYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 700 ~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
+|.||+.||++|+++++.|+|+++|||+||||+|+|++.+.... ......+++.+++.+||.+
T Consensus 157 ~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~~------~~~~~~~~~~~~i~~fl~~ 219 (220)
T cd04380 157 VFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGGK------ERRAERDRKRAFIEQFLLN 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccchh------HHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999766542 3556788999999999975
No 6
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=1.2e-34 Score=292.68 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=159.4
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.++++++ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~L~~~~~r~~--------------------------~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~ 54 (196)
T cd04387 1 FGVKISTVTKRER--------------------------SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAF 54 (196)
T ss_pred CCCCHHHHHHhcC--------------------------CCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHH
Confidence 9999999999876 56999999999999999999999999999999999999999
Q ss_pred hcCCCCC---C-CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy3271 638 DTGSSDP---L-PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSF 707 (781)
Q Consensus 638 d~g~~~~---~-~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~f 707 (781)
|++.... + ..|+|++|++||.|||+||+||||+++|++++++.+ ..+.++.++.+||+.|+.+|.||+.|
T Consensus 55 d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~ 134 (196)
T cd04387 55 DTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHH 134 (196)
T ss_pred hCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9985422 2 238999999999999999999999999999988764 24467899999999999999999999
Q ss_pred HHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCc-cCcchhHHHHHHHHHHHHHHHh
Q psy3271 708 LQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSA-RGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 708 L~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~-~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
|++|+++++.|||+++|||+||||+|+|++........ -.......+..+++.++.+||.
T Consensus 135 L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd04387 135 LKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNTMTDSWSLEVMSQVQVLLYFLQ 195 (196)
T ss_pred HHHHHhcccccCCCHHHHHHHHccccCCCCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876554321 1111234577788889999875
No 7
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.1e-34 Score=293.41 Aligned_cols=179 Identities=21% Similarity=0.401 Sum_probs=153.6
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++...+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FG~~L~~~~~~~~--------------------------~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~ 54 (194)
T cd04372 1 YGCDLTTLVKAHN--------------------------TQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAF 54 (194)
T ss_pred CCCChHHHHHHcC--------------------------CCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHH
Confidence 8999999999765 46999999999999999999999999999999999999999
Q ss_pred hcCC-CCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 638 DTGS-SDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 638 d~g~-~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
|++. ..++. .|+|++|++||.|||+||+||+|.++|+.++++.+ ..+.++.++.+||+.|+.+|.||+.
T Consensus 55 d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~ 134 (194)
T cd04372 55 DRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLME 134 (194)
T ss_pred cCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9853 33332 38999999999999999999999999999998764 2457889999999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
||++|+++++.|||+++|||+||||+|+|++...... .+........+++.||.+.
T Consensus 135 ~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~-------~~~~~~~~~~iv~~LI~~~ 190 (194)
T cd04372 135 HLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSALT-------TLNDMRYQILIVQLLITNE 190 (194)
T ss_pred HHHHHHhccccCCCCHHHHHHHHhcccCCCCCccHHH-------HHHhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998643322 3334445555666555543
No 8
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-34 Score=294.04 Aligned_cols=180 Identities=19% Similarity=0.296 Sum_probs=155.8
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.+++..+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~l~~l~~~~~--------------------------~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~ 54 (200)
T cd04408 1 FGVDFSQLPRDFP--------------------------EEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAF 54 (200)
T ss_pred CCCCHHHHHHhCC--------------------------CCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHH
Confidence 9999999999765 56999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------------------hHHHHHHHhhcCCHHH
Q psy3271 638 DTGSS-DPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------------------SYVQAKQLIASLPLCS 697 (781)
Q Consensus 638 d~g~~-~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------------------~~~~~~~ll~~LP~~n 697 (781)
|+|.. .++.. ++|++|++||.|||+||+||||+++|+.++++.+ ..+.++.++.+||+.|
T Consensus 55 d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n 134 (200)
T cd04408 55 ENGRDLVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSN 134 (200)
T ss_pred hcCCCccCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHH
Confidence 99874 23333 8999999999999999999999999999987653 2457889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 698 RNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 698 ~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
+.+|.||+.||++|+.+++.|+|+++|||+||||+|+|+++.....+ ....+......+|+.+|.+
T Consensus 135 ~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~-----~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 135 YNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVSM-----ICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccccCCCCCCCchHH-----HHHhccchHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997654332 2334455556667666643
No 9
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=1.4e-34 Score=294.20 Aligned_cols=185 Identities=25% Similarity=0.417 Sum_probs=156.3
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||+||++++..++ ...+..||.+|.+|++||+++|+++|||||++|+..+++++++
T Consensus 1 ~iFG~~L~~~~~~~~----------------------~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~ 58 (199)
T cd04390 1 GVFGQRLEDTVAYER----------------------KFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQD 58 (199)
T ss_pred CcCCccHHHHHHHhc----------------------ccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHH
Confidence 389999999998765 1122569999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCC--CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh--------hHHHHHHHhhcCCHHHHHHHHHHH
Q psy3271 636 WLDTGSSDPLP--GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST--------SYVQAKQLIASLPLCSRNVYLYLC 705 (781)
Q Consensus 636 ~ld~g~~~~~~--~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~--------~~~~~~~ll~~LP~~n~~~L~yL~ 705 (781)
.+|+|....++ .|+|++|++||.|||+||+||+|++.|++++.+.+ ....+++++.+||+.|+.+|.||+
T Consensus 59 ~~d~~~~~~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~ 138 (199)
T cd04390 59 AFDAGERPSFDSDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYIC 138 (199)
T ss_pred HHhCCCCCCccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999765554 48999999999999999999999999999987754 234678889999999999999999
Q ss_pred HHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 706 SFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 706 ~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
.||++|+++++.|||+++|||+||||+|+|++..+... ..........+++.||.+.
T Consensus 139 ~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~~~~-------~~~~~~~~~~~~~~lI~~~ 195 (199)
T cd04390 139 RFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPAT-------IMEGTPQIQQLMTVMISKH 195 (199)
T ss_pred HHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCCHHH-------HHhccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987533222 2333344455676666544
No 10
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.1e-34 Score=291.59 Aligned_cols=177 Identities=21% Similarity=0.342 Sum_probs=154.8
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||.||+++++..+ ..||.+|.+|++||+++|+++|||||++|+..+++++++
T Consensus 1 k~FG~~L~~~~~~~~--------------------------~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~ 54 (188)
T cd04383 1 KLFNGSLEEYIQDSG--------------------------QAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKN 54 (188)
T ss_pred CcCCccHHHHHHHCC--------------------------CCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHH
Confidence 479999999998665 469999999999999999999999999999999999999
Q ss_pred HHhcCCCCCC----CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHH
Q psy3271 636 WLDTGSSDPL----PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLC 705 (781)
Q Consensus 636 ~ld~g~~~~~----~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~ 705 (781)
.+|+|..... ..|+|++|++||.|||+||+||+|.++|++++++.+ ....+++++.+||+.|+.+|.||+
T Consensus 55 ~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~ 134 (188)
T cd04383 55 AFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLF 134 (188)
T ss_pred HHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 9999874321 238999999999999999999999999999998764 245788999999999999999999
Q ss_pred HHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHh
Q psy3271 706 SFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 706 ~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
.||++|+++++.|||+++|||+||||+|+|.|++... ........+++..+|+
T Consensus 135 ~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~~~---------~~~~~~~~~~~~~li~ 187 (188)
T cd04383 135 AFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQ---------VSCQAHVNELIKTIII 187 (188)
T ss_pred HHHHHHHHHHHhhCCCcccceeeeeccccCCCCCccH---------HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998763332 3345566667777664
No 11
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3e-34 Score=287.91 Aligned_cols=177 Identities=21% Similarity=0.327 Sum_probs=153.4
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++. ++ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~L~~~~~-~~--------------------------~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~ 53 (186)
T cd04407 1 FGVRVGSLTS-NK--------------------------TSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLL 53 (186)
T ss_pred CCCcHHHHHh-CC--------------------------CCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHH
Confidence 9999999976 33 46999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy3271 638 DTGSS-DPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQ 709 (781)
Q Consensus 638 d~g~~-~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~ 709 (781)
|++.. .++. .|+|++|++||.|||+||+||+|+++|++|+.+.+ ...+++.++.+||+.|+.+|.||+.||+
T Consensus 54 ~~~~~~~~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~ 133 (186)
T cd04407 54 QADPENVKLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLV 133 (186)
T ss_pred hcCCcccCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 98742 3332 38999999999999999999999999999998764 2457889999999999999999999999
Q ss_pred HHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHh
Q psy3271 710 ELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 710 ~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
+|+++++.|||+++|||+||||+|+|+|+..... ..+....+...+|+.+|.
T Consensus 134 ~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~d~~------~~~~~~~~~~~~v~~li~ 185 (186)
T cd04407 134 KVALEEDVNRMSPNALAIVFAPCLLRCPDSSDPL------TSMKDVAKTTTCVEMLIK 185 (186)
T ss_pred HHHhccccCCCChhHHHHhhhccccCCCCCCCHH------HHHHhhhhhHHHHHHHhh
Confidence 9999999999999999999999999997643322 245566666777776664
No 12
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-34 Score=289.29 Aligned_cols=183 Identities=23% Similarity=0.373 Sum_probs=160.3
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHh-ccccCCCceeccCCHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYR-HGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~-~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
||+||++++.+++ .......||.+|++|+++|.+ +|+++|||||++|+..+++++++.
T Consensus 1 FG~~L~~~~~r~~---------------------~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~ 59 (187)
T cd04389 1 FGSSLEEIMDRQK---------------------EKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLR 59 (187)
T ss_pred CCCCHHHHHHHHH---------------------hhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHH
Confidence 9999999998875 122346799999999999864 699999999999999999999999
Q ss_pred HhcCCCCCC-CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhh
Q psy3271 637 LDTGSSDPL-PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHA 715 (781)
Q Consensus 637 ld~g~~~~~-~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s 715 (781)
+|+|..... ..|+|++|++||.|||+||+||+|+++|++++.+.++.+.+++++.+||+.|+.+|.||+.||++|++++
T Consensus 60 ~d~~~~~~~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~ 139 (187)
T cd04389 60 VDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPE 139 (187)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999874322 2389999999999999999999999999999998888889999999999999999999999999999754
Q ss_pred --cccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 716 --EENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 716 --~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
+.|||+++|||+||||+|+|++.++... ..+...+..++++.||.+
T Consensus 140 ~~~~NkM~~~NLAivf~P~l~~~~~~~~~~-------~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 140 NVAHTKMDVSNLAMVFAPNILRCTSDDPRV-------IFENTRKEMSFLRTLIEH 187 (187)
T ss_pred CCCCCCCCHHHHHHHHccccCCCCCCCHHH-------HHHccHHHHHHHHHHhcC
Confidence 7899999999999999999987654433 456777888899888753
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-34 Score=287.28 Aligned_cols=158 Identities=27% Similarity=0.461 Sum_probs=145.3
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+++++..+ ..||.+|.+|++||+++|+++|||||++|+..++++++..+
T Consensus 1 FGv~L~~~~~~~~--------------------------~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~ 54 (187)
T cd04403 1 FGCHLEALCQREN--------------------------STVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAV 54 (187)
T ss_pred CCCChHHHHHHcC--------------------------CCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHh
Confidence 9999999998765 46999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHH
Q psy3271 638 DTGSSDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSF 707 (781)
Q Consensus 638 d~g~~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~f 707 (781)
|++...++. .|+|++|++||.|||+||+||+|+++|++++++.+. .+.++.++.+||+.|+.+|.||+.|
T Consensus 55 d~~~~~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~ 134 (187)
T cd04403 55 DHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRH 134 (187)
T ss_pred cCCCCCCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998765442 389999999999999999999999999999987652 4578899999999999999999999
Q ss_pred HHHHHHhhcccCCChhhhhHhhccccccCCCCCC
Q psy3271 708 LQELLSHAEENRLDAKTIATLFGQIFLRDPPRSR 741 (781)
Q Consensus 708 L~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~ 741 (781)
|++|+++++.|||+++|||+||||+|+|++....
T Consensus 135 L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~ 168 (187)
T cd04403 135 LCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG 168 (187)
T ss_pred HHHHHhccccccCChHHhhhhccccccCCCCcch
Confidence 9999999999999999999999999999886543
No 14
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.1e-34 Score=291.42 Aligned_cols=197 Identities=19% Similarity=0.289 Sum_probs=165.5
Q ss_pred ccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHH
Q psy3271 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 555 ~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr 634 (781)
.++||+||+.++.+.+ ..||.+|.+|++||+++|+++|||||++|+..++++|+
T Consensus 2 ~~vFGvpL~~~~~r~g--------------------------~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~ 55 (220)
T cd04375 2 KNVFGVPLLVNLQRTG--------------------------QPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLR 55 (220)
T ss_pred CCEecCcHHHHHhhcC--------------------------CCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHH
Confidence 4799999998887654 46999999999999999999999999999999999999
Q ss_pred HHHhcCCC-CCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 635 NWLDTGSS-DPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 635 ~~ld~g~~-~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
+.+|++.. ..++. ++|++|++||.|||+||+||+|+++|+.|+.+.+ ..++++.++..||++|+.+|+||+.
T Consensus 56 ~~~d~~~~~~~~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~ 135 (220)
T cd04375 56 SMIESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLY 135 (220)
T ss_pred HHHhcCCCccCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99998643 33433 8999999999999999999999999999998753 3567888999999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC------------ccCcchhHHHHHHHHHHHHHHHhcCCccee
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS------------ARGKSQTQTQARRKANFVYHFLVNDFSELI 774 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~------------~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~ 774 (781)
||++|++|++.|||+++|||+||||+||+++.+....+ +........+...+.+.+.+||.+...-+.
T Consensus 136 ~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 136 FLSDVAANSQENQMTATNLAVCLAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred HHHHHHHhccccCCCHHHHHHHHhhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999876543211 112223445556667778777777777777
Q ss_pred cCC
Q psy3271 775 APV 777 (781)
Q Consensus 775 ~~~ 777 (781)
+|.
T Consensus 216 vp~ 218 (220)
T cd04375 216 VPK 218 (220)
T ss_pred CCC
Confidence 775
No 15
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=5.8e-34 Score=285.80 Aligned_cols=175 Identities=23% Similarity=0.331 Sum_probs=149.3
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.++..+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~L~~l~~~~---------------------------~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~ 53 (186)
T cd04406 1 FGVELSRLTSED---------------------------RSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGL 53 (186)
T ss_pred CCCchHHHHHCC---------------------------CCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHH
Confidence 999999998633 35999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy3271 638 DTGSS-DPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQ 709 (781)
Q Consensus 638 d~g~~-~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~ 709 (781)
|++.. ..+. .|+|++|++||.|||+||+||||+++|++++++.+ ....++.++.+||+.|+.+|.||+.||.
T Consensus 54 d~~~~~~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~ 133 (186)
T cd04406 54 DTDANSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLV 133 (186)
T ss_pred ccCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 98753 3343 39999999999999999999999999999998764 2346788999999999999999999999
Q ss_pred HHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHH
Q psy3271 710 ELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHF 765 (781)
Q Consensus 710 ~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~f 765 (781)
+|++|++.|+|+++|||+||||+|+|+|+... +. +..++..+..+.++.+
T Consensus 134 ~V~~~s~~NkM~~~NLAivf~P~ll~~p~~~d-~~-----~~~~~~~~~~~~~~~~ 183 (186)
T cd04406 134 RIALQEETNRMSANALAIVFAPCILRCPDTTD-PL-----QSVQDISKTTTCVELI 183 (186)
T ss_pred HHHhCCCccCCChHHHHHHhcccccCCCCCCC-HH-----HHHHHHhhccchhhhh
Confidence 99999999999999999999999999976433 21 2344555555555443
No 16
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.8e-34 Score=292.89 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=146.2
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
+||+||+++++..+...++... ...+.....||.+|.+|++||+++|+++|||||++|+..++++|++.
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~ 69 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDE-----------DGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLI 69 (225)
T ss_pred CCCCcHHHHHHhcchheeeecC-----------CCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHH
Confidence 6999999999988721111100 00123446799999999999999999999999999999999999999
Q ss_pred HhcCC----CCCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----------------------hHHHHHH
Q psy3271 637 LDTGS----SDPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----------------------SYVQAKQ 688 (781)
Q Consensus 637 ld~g~----~~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----------------------~~~~~~~ 688 (781)
+|++. ..++. .++|++|++||+|||+||+||+|+++|++|..+.. .++.++.
T Consensus 70 ~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~ 149 (225)
T cd04396 70 FSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRD 149 (225)
T ss_pred HccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHH
Confidence 99863 23332 38999999999999999999999999999976542 2345688
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCC
Q psy3271 689 LIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRS 740 (781)
Q Consensus 689 ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~ 740 (781)
++.+||+.|+.+|.||+.||++|+++++.|||+++|||+||||+|+++|.+.
T Consensus 150 li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~ 201 (225)
T cd04396 150 LITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE 201 (225)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence 9999999999999999999999999999999999999999999999987643
No 17
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-33 Score=289.29 Aligned_cols=180 Identities=21% Similarity=0.328 Sum_probs=155.2
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++...+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FG~~L~~~~~~~~--------------------------~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~ 54 (211)
T cd04409 1 FGADFAQVAKKSP--------------------------DGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAF 54 (211)
T ss_pred CCCChHHHHHhCC--------------------------CCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHH
Confidence 9999999999764 46999999999999999999999999999999999999999
Q ss_pred hcCCCC-CC-CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh----------------------------HHHHH
Q psy3271 638 DTGSSD-PL-PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS----------------------------YVQAK 687 (781)
Q Consensus 638 d~g~~~-~~-~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~----------------------------~~~~~ 687 (781)
|+|... ++ ..++|++|++||.|||+||+||+|.++|++++++.+. ..+++
T Consensus 55 d~~~~~~~~~~~~~h~va~~LK~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~ 134 (211)
T cd04409 55 ENGKDLVELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSK 134 (211)
T ss_pred HcCCCccccccCCHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHH
Confidence 998642 23 2389999999999999999999999999999886531 23578
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHh
Q psy3271 688 QLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 688 ~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
+++.+||++|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++.+....+ .....+...+.++++.+|.
T Consensus 135 ~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~----~~~~~~~~~~~~~ve~li~ 210 (211)
T cd04409 135 DLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVS----LSSLVDYPHQARLVELLIT 210 (211)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHhhhhccccccCCCCCCcchh----HHHHhhhhhHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999999999987654331 1234456667777777664
No 18
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-33 Score=290.80 Aligned_cols=199 Identities=19% Similarity=0.263 Sum_probs=163.7
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
+||+||++++..++ .......||.+|.+|++||+++|+++|||||++|+..+++++++.
T Consensus 1 vFGv~L~~l~~~~~---------------------~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ 59 (216)
T cd04391 1 LFGVPLSTLLERDQ---------------------KKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQE 59 (216)
T ss_pred CCCCCHHHHHHHhc---------------------ccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHH
Confidence 69999999999875 111335799999999999999999999999999999999999999
Q ss_pred HhcCCC---CCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 637 LDTGSS---DPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 637 ld~g~~---~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
+|++.. .++. .++|++|++||.|||+||+||+|+++|+.+..+.+ ..++++.++.+||+.|+.+|.||+.
T Consensus 60 ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~ 139 (216)
T cd04391 60 LEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLE 139 (216)
T ss_pred HhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 998632 2332 38999999999999999999999999999988653 2456788899999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
||++|++|++.|||+++|||+||||+||++....... .+.............+++..||.+...-|-+|.
T Consensus 140 ~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~~-~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 140 FLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKD-NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHHHHHHccccCCCChHHHHHHhccccCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 9999999999999999999999999999987543321 011122333455567788888887776666664
No 19
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-33 Score=286.16 Aligned_cols=186 Identities=21% Similarity=0.290 Sum_probs=154.0
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.++..++ ....||.+|++|++||+++|+++|||||++|+..++++|++.+
T Consensus 1 FGvpL~~l~~re~------------------------~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~ 56 (207)
T cd04379 1 FGVPLSRLVEREG------------------------ESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAF 56 (207)
T ss_pred CCCChHHHHhhcC------------------------CCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHH
Confidence 9999999998754 1256999999999999999999999999999999999999999
Q ss_pred hcCCC-CCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh---------HHHHHHHhhcCCHHHHHHHHH
Q psy3271 638 DTGSS-DPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS---------YVQAKQLIASLPLCSRNVYLY 703 (781)
Q Consensus 638 d~g~~-~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~---------~~~~~~ll~~LP~~n~~~L~y 703 (781)
|++.. .+++ .|+|++|++||.|||+||+||||+++|+.++++... ...++.++.+||+.|+++|.|
T Consensus 57 d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~ 136 (207)
T cd04379 57 ERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLL 136 (207)
T ss_pred cCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 98752 2332 289999999999999999999999999999987641 335778899999999999999
Q ss_pred HHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC----ccCcchhHHHHHHHHHHHHHHHh
Q psy3271 704 LCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS----ARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 704 L~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~----~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
|+.||++|+++++.|||+++|||+||||+||+++....... ...-+....+..+.+..+.++|.
T Consensus 137 Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (207)
T cd04379 137 LLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQ 204 (207)
T ss_pred HHHHHHHHHHcccccCCChHHhHHhhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987664220 00001122245566666666654
No 20
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-33 Score=285.96 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=145.0
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||+||++++...+ ..||.++.+|++||+++|+ +|||||++|+..+++++++
T Consensus 1 ~vFG~~L~~~~~~~g--------------------------~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~ 53 (195)
T cd04384 1 RVFGCDLTEHLLNSG--------------------------QDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRH 53 (195)
T ss_pred CcCCccHHHHHHHcC--------------------------CCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHH
Confidence 379999999988654 4699999999999999999 5999999999999999999
Q ss_pred HHhcCCCCCC-----CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHH
Q psy3271 636 WLDTGSSDPL-----PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYL 704 (781)
Q Consensus 636 ~ld~g~~~~~-----~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL 704 (781)
.+|+|...++ ..|+|++|++||.|||+||+||+|+++|+.++++.+ ..+.++.++.+||+.|+.+|.||
T Consensus 54 ~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L 133 (195)
T cd04384 54 EFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFL 133 (195)
T ss_pred HHcCCCCCCcccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999975443 238999999999999999999999999999998765 24578899999999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCC
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRD 742 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~ 742 (781)
+.||++|+++++.|||+++|||+||||+|+|+++....
T Consensus 134 ~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~~~ 171 (195)
T cd04384 134 MRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESA 171 (195)
T ss_pred HHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccccc
Confidence 99999999999999999999999999999999875443
No 21
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=1.3e-33 Score=287.50 Aligned_cols=181 Identities=21% Similarity=0.303 Sum_probs=155.7
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.+++..+ ..||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FG~~L~~~~~~~~--------------------------~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~ 54 (203)
T cd04378 1 FGVDFSQVPRDFP--------------------------DEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAF 54 (203)
T ss_pred CCCChHHHHHHCC--------------------------CCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHH
Confidence 9999999999765 46999999999999999999999999999999999999999
Q ss_pred hcCCCC-CCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh--------------------HHHHHHHhhcCCH
Q psy3271 638 DTGSSD-PLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS--------------------YVQAKQLIASLPL 695 (781)
Q Consensus 638 d~g~~~-~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~--------------------~~~~~~ll~~LP~ 695 (781)
|+|... ++. .++|++|++||+|||+||+||+|+++|+.++.+.+. .+.+++++.+||+
T Consensus 55 ~~~~~~~~~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~ 134 (203)
T cd04378 55 ENGKDLVELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPA 134 (203)
T ss_pred hcCCCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCH
Confidence 998642 332 389999999999999999999999999999887642 3467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 696 CSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 696 ~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
.|+.+|.||+.||++|+++++.|||+++|||+||||+|||++....+.+ .....+......+|+.||.+
T Consensus 135 ~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~~----~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 135 SNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDADVS----LSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCCCcchh----HHHHHhhhhhHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999998654331 11233555566677777653
No 22
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.6e-33 Score=282.42 Aligned_cols=180 Identities=27% Similarity=0.416 Sum_probs=157.0
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||+||+++++... ....||.+|++|++||+++|+++|||||++|+..+++++++
T Consensus 1 ~~FGv~L~~l~~~~~------------------------~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~ 56 (189)
T cd04393 1 KVFGVPLQELQQAGQ------------------------PENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQ 56 (189)
T ss_pred CcccccHHHHHhccC------------------------CCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHH
Confidence 379999999987532 22469999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCC--CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh-------HHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 636 WLDTGSSDPLPG--SVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS-------YVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 636 ~ld~g~~~~~~~--dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~-------~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
.+|+|...+++. |+|++|++||.|||+||+||+|++.|+.++++.+. ...+++++.+||+.|+.+|.||+.
T Consensus 57 ~~d~~~~~~~~~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~ 136 (189)
T cd04393 57 RLDSGEEVDLSKEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCH 136 (189)
T ss_pred HHcCCCCCCccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999998766643 89999999999999999999999999999887542 357889999999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
||++|++|++.|+||++|||+||||+|||.+++.. .+.+..-..+++.++|.|
T Consensus 137 ~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~~---------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 137 FLSNVASQHHENRMTAENLAAVFGPDVFHVYTDVE---------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred HHHHHHHcccccCCCHHHhhhhccCceeCCCCCcc---------cHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987543 233455566677776653
No 23
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-33 Score=282.66 Aligned_cols=156 Identities=20% Similarity=0.312 Sum_probs=145.3
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
+||+||+++++ + ..||.+|.+|++||+++|+++|||||++|+..+++++++.
T Consensus 1 ~FG~~L~~~~~--~--------------------------~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~ 52 (192)
T cd04402 1 LFGQPLSNICE--D--------------------------DNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEK 52 (192)
T ss_pred CCCCcHHHHhC--C--------------------------CCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHH
Confidence 59999999988 3 3599999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy3271 637 LDTGSSDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQ 709 (781)
Q Consensus 637 ld~g~~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~ 709 (781)
+|+|...+++. |+|++|++||+|||+||+||||++.|+.++.+.+ ..+.++.++.+||+.|+.+|.||+.||+
T Consensus 53 ~~~~~~~~~~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~ 132 (192)
T cd04402 53 LNSGVEVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLH 132 (192)
T ss_pred HhCCCCCCCccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99998766654 8999999999999999999999999999998764 3567899999999999999999999999
Q ss_pred HHHHhhcccCCChhhhhHhhccccccCCCCC
Q psy3271 710 ELLSHAEENRLDAKTIATLFGQIFLRDPPRS 740 (781)
Q Consensus 710 ~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~ 740 (781)
+|+.+++.|+|+++|||+||||+|||++.+.
T Consensus 133 ~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~ 163 (192)
T cd04402 133 NISQNSETNKMDAFNLAVCIAPSLLWPPASS 163 (192)
T ss_pred HHHHhccccCCCHHHhhhhccccccCCCCcc
Confidence 9999999999999999999999999998754
No 24
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.5e-33 Score=282.48 Aligned_cols=193 Identities=26% Similarity=0.336 Sum_probs=159.5
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
+||+||+.++....+ ....||.+|.+|++||++ |+++|||||++|+..+++++++.
T Consensus 1 vFGv~L~~l~~~~~~-----------------------~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~ 56 (202)
T cd04394 1 VFGVPLHSLPHSTVP-----------------------EYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAK 56 (202)
T ss_pred CCCccHHHHHHhhCC-----------------------CCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHH
Confidence 699999999875320 124799999999999987 59999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy3271 637 LDTGSSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQE 710 (781)
Q Consensus 637 ld~g~~~~~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~ 710 (781)
+|+|.......++|++|++||.|||+||+||+|+++|+.++.+.+ ..+.++.++.+||+.|+.+|.||+.||++
T Consensus 57 ~d~~~~~~~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~ 136 (202)
T cd04394 57 LEGGEACLSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYD 136 (202)
T ss_pred HcCCCCCccccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999976544458999999999999999999999999999998764 23456778899999999999999999999
Q ss_pred HHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 711 LLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 711 V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
|++|++.|||+++|||+||||+|++++.+....+ ...........++++.||.+-..-+.+|.
T Consensus 137 V~~~~~~NkM~~~NLAivfaP~L~~~~~~~~~~s----~~~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 137 VAQRCSENKMDSSNLAVIFAPNLFQSEEGGEKMS----SSTEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred HHHhcccccCCHHHHHHhhcceeecCCCcccccc----hhHHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999999999999999999999887544221 01122344556778877777666555653
No 25
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-33 Score=280.32 Aligned_cols=155 Identities=20% Similarity=0.351 Sum_probs=142.3
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++... ..||.+|++|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FG~pL~~~~~~~---------------------------~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~ 53 (185)
T cd04373 1 FGVPLANVVTSE---------------------------KPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQF 53 (185)
T ss_pred CCCchHHHHhCC---------------------------CCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHH
Confidence 899999998843 36999999999999999999999999999999999999999
Q ss_pred hcCCCCCC---CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy3271 638 DTGSSDPL---PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFL 708 (781)
Q Consensus 638 d~g~~~~~---~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL 708 (781)
|++...++ +.++|++|++||.|||+||+||+|+++|+++.++.+ ....+++++++||+.|+.+|.||+.||
T Consensus 54 ~~~~~~~~~~~~~~~~~va~~lK~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L 133 (185)
T cd04373 54 DQDHNLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHL 133 (185)
T ss_pred hcCCCCCcccccCcHHHHHHHHHHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99875554 238999999999999999999999999999998764 245788999999999999999999999
Q ss_pred HHHHHhhcccCCChhhhhHhhccccccCCCC
Q psy3271 709 QELLSHAEENRLDAKTIATLFGQIFLRDPPR 739 (781)
Q Consensus 709 ~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~ 739 (781)
++|+++++.|+|+++|||+||||+|+|++.+
T Consensus 134 ~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~ 164 (185)
T cd04373 134 NKVSQNSKVNLMTSENLSICFWPTLMRPDFT 164 (185)
T ss_pred HHHHHcccccCCChHHHHHHHccccCCCCCC
Confidence 9999999999999999999999999997764
No 26
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.6e-33 Score=282.20 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=155.3
Q ss_pred ccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHH
Q psy3271 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 555 ~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr 634 (781)
..+||+||+++++..+ ..||.++.+|++||+++|+++|||||++|+..++++++
T Consensus 2 ~~~FG~~L~~~~~~~~--------------------------~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~ 55 (203)
T cd04386 2 KPVFGTPLEEHLKRTG--------------------------REIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLK 55 (203)
T ss_pred CCcCCCCHHHHHHHcC--------------------------CCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHH
Confidence 4689999999988655 35999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC----CCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHH
Q psy3271 635 NWLDTGSSDP----LPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYL 704 (781)
Q Consensus 635 ~~ld~g~~~~----~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL 704 (781)
+.+|+|.... ...++|++|++||.|||+||+||+|.++|++++.+.+ ..+.+++++.+||+.|+++|.||
T Consensus 56 ~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l 135 (203)
T cd04386 56 AALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYL 135 (203)
T ss_pred HHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999987422 1238999999999999999999999999999998764 24678899999999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
+.||++|+++++.|+|+++|||+||||+|+|++.+....+ ...........+++.+|.+-
T Consensus 136 ~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~-----~~~~~~~~~~~iv~~LI~~~ 195 (203)
T cd04386 136 IKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAE-----MAAGTSVHVVAIVELIISHA 195 (203)
T ss_pred HHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhh-----hhhhhhHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999987543221 11123344555666555543
No 27
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1e-32 Score=277.26 Aligned_cols=177 Identities=25% Similarity=0.361 Sum_probs=154.8
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++... ..||.+|.+|++||+++|+++|||||.+|+..+++++++.+
T Consensus 1 FG~~L~~~~~~~---------------------------~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l 53 (186)
T cd04377 1 FGVSLSSLTSED---------------------------RSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGL 53 (186)
T ss_pred CCCCHHHHHhCC---------------------------CCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHH
Confidence 899999998532 35999999999999999999999999999999999999999
Q ss_pred hcCC-CCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy3271 638 DTGS-SDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQ 709 (781)
Q Consensus 638 d~g~-~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~ 709 (781)
|++. ..++.. ++|++|++||.|||+||+||+|+++|++++.+.+ ....++.++.+||+.|+.+|.||+.||+
T Consensus 54 ~~~~~~~~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~ 133 (186)
T cd04377 54 DTDPDSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLV 133 (186)
T ss_pred hCCCcccCcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 9984 233333 8999999999999999999999999999998764 2457888999999999999999999999
Q ss_pred HHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHh
Q psy3271 710 ELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 710 ~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
+|+.+++.|+|+++|||+||||+|+|++.+.... ....+..+...+++.+|.
T Consensus 134 ~v~~~s~~NkM~~~nLaivf~P~ll~~~~~~~~~------~~~~d~~~~~~~~e~li~ 185 (186)
T cd04377 134 RVALQEEVNRMSANALAIVFAPCILRCPDTADPL------QSLQDVSKTTTCVETLIK 185 (186)
T ss_pred HHHhccCCCCCCHHHHHHHHhhHhcCCCCCCCHH------HHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998643321 256677788888888775
No 28
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-32 Score=278.93 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=158.0
Q ss_pred cccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHH
Q psy3271 554 ERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLI 633 (781)
Q Consensus 554 ~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~l 633 (781)
.+++||+||+++++..+ ....||.+|++|++||+++|+++|||||.+|+..+++++
T Consensus 2 ~~~~FGv~L~~~~~~~~------------------------~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l 57 (195)
T cd04404 2 PTQQFGVSLQFLKEKNP------------------------EQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEV 57 (195)
T ss_pred CCCcCCCcHHHHHHhCC------------------------CCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHH
Confidence 35799999999988654 124699999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCC--CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----hHHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 634 RNWLDTGSSDPLPG--SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----SYVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 634 r~~ld~g~~~~~~~--dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----~~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
++.+|+|...+++. |+|++|++||.|||+||+||+|.+.|+.++.+.+ ..+.++.++.+||+.|+.+|.||+.
T Consensus 58 ~~~~~~~~~~~~~~~~d~~~va~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~ 137 (195)
T cd04404 58 QQKYNMGEPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIK 137 (195)
T ss_pred HHHHhCCCCCCcccccCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 99999998776655 9999999999999999999999999999987643 3567889999999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
||++|+++++.|+|+++|||+||||+|+|++.... ..++......|+..+|.+-
T Consensus 138 ~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~---------~l~~~~~~~~~~~~LI~~~ 191 (195)
T cd04404 138 FLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASM---------SLSAINPINTFTKFLLDHQ 191 (195)
T ss_pred HHHHHHhcccccCCCHhHhheeeeccccCCCCccc---------CHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999876422 2334444455666655543
No 29
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-32 Score=282.31 Aligned_cols=197 Identities=16% Similarity=0.191 Sum_probs=161.2
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||+.|+.+.+--.. ...+.....||.+|.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~L~~l~~~~~~~~~---------------~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~ 65 (213)
T cd04397 1 FGVPLEILVEKFGADST---------------LGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEI 65 (213)
T ss_pred CCCCHHHHHHHhCcccc---------------cccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHH
Confidence 99999999999761000 001224457999999999999999999999999999999999999999
Q ss_pred hcCCCC--CCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy3271 638 DTGSSD--PLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFL 708 (781)
Q Consensus 638 d~g~~~--~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL 708 (781)
|++... ++. .++|++|++||.|||+||+||+|.++|+.|+++.+ ....++.++.+||+.|+.+|.||+.||
T Consensus 66 d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L 145 (213)
T cd04397 66 DKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFL 145 (213)
T ss_pred hcCCCcccccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 997532 333 38999999999999999999999999999998764 234567788999999999999999999
Q ss_pred HHHHHhhc-----ccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 709 QELLSHAE-----ENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 709 ~~V~~~s~-----~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
++|+.+++ .|||+++|||+||||+|+|++++.... ..+...+.+++..+|.+...-+-+|.
T Consensus 146 ~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~--------~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 146 KWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDNPNT--------GDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred HHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCCcch--------HHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 99998765 599999999999999999998754222 23445566788888887776665653
No 30
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=7e-33 Score=277.44 Aligned_cols=157 Identities=19% Similarity=0.336 Sum_probs=143.3
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++++.+ ...+..||.++.+|++||+++|+++|||||++|+..+++++++.+
T Consensus 1 FGv~L~~~~~~~~----------------------~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~ 58 (182)
T cd04381 1 FGASLSLAVERSR----------------------CHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAY 58 (182)
T ss_pred CCCCHHHHHHhhc----------------------cCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHH
Confidence 9999999998764 112357999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy3271 638 DTGSSDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQE 710 (781)
Q Consensus 638 d~g~~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~ 710 (781)
|++...++.. |+|++|++||.|||+||+||||.++|+.+.++.+ ....++.++.+||+.|+.+|.||+.||++
T Consensus 59 ~~~~~~~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~ 138 (182)
T cd04381 59 NRRESPNLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDH 138 (182)
T ss_pred cCCCCCCccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9998766644 9999999999999999999999999999988764 35678899999999999999999999999
Q ss_pred HHHhhcccCCChhhhhHhhccccccC
Q psy3271 711 LLSHAEENRLDAKTIATLFGQIFLRD 736 (781)
Q Consensus 711 V~~~s~~NkM~~~nLA~vfaP~Llr~ 736 (781)
|+++++.|+|+++|||+||||+|+.+
T Consensus 139 V~~~s~~NkM~~~NLAivfaP~l~~~ 164 (182)
T cd04381 139 VIAQELETKMNIQNISIVLSPTVQIS 164 (182)
T ss_pred HHHhCcccCCCHHHHHHHhCccccCc
Confidence 99999999999999999999999754
No 31
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=7.1e-32 Score=273.59 Aligned_cols=182 Identities=20% Similarity=0.311 Sum_probs=154.4
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
.||+||++..+... ...||.+|.+|+++|+++|+++|||||.+|+..+++++++.
T Consensus 1 ~FGvpl~~~~~~~~-------------------------~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~ 55 (196)
T cd04395 1 TFGVPLDDCPPSSE-------------------------NPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEE 55 (196)
T ss_pred CCCccHHHHhcccC-------------------------CCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHH
Confidence 49999998665332 14699999999999999999999999999999999999999
Q ss_pred HhcCCCC-CCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHH
Q psy3271 637 LDTGSSD-PLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLC 705 (781)
Q Consensus 637 ld~g~~~-~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~ 705 (781)
+|+|... ++. .|+|++|++||.|||+||+||||.+.|++++.+.+ ....+++++.+||+.|+.+|.||+
T Consensus 56 l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~ 135 (196)
T cd04395 56 LNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLI 135 (196)
T ss_pred HhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 9998642 221 28999999999999999999999999999988653 245788999999999999999999
Q ss_pred HHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 706 SFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 706 ~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
.||++|+++++.|+|+++|||+||||+|+|++.+.... .........++++.+|.+.+
T Consensus 136 ~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~~~~~-------~~~~~~~~~~ii~~LI~~~d 193 (196)
T cd04395 136 RHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNMET-------MVTHMPDQCKIVETLIQHYD 193 (196)
T ss_pred HHHHHHHHhhccccccccchHHhhccccCCCCCCCHHH-------HHHhHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999997643322 33345556678777776654
No 32
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=5.5e-32 Score=273.77 Aligned_cols=175 Identities=20% Similarity=0.342 Sum_probs=152.9
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL 637 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l 637 (781)
||+||++++..++ ..||.+|.+|++||+++|+++|||||.+|+..+++++++.+
T Consensus 1 FG~~L~~~~~~~~--------------------------~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~ 54 (192)
T cd04398 1 FGVPLEDLILREG--------------------------DNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELF 54 (192)
T ss_pred CCCChHHHHHHcC--------------------------CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHH
Confidence 8999999998765 46999999999999999999999999999999999999999
Q ss_pred hcCCCC-C------CCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHH
Q psy3271 638 DTGSSD-P------LPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYL 704 (781)
Q Consensus 638 d~g~~~-~------~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL 704 (781)
|++... . ...|+|++|++||.|||+||+||+|.++|++++++.+ ..+.++.++.+||+.|+.+|.||
T Consensus 55 d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l 134 (192)
T cd04398 55 DKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRAL 134 (192)
T ss_pred ccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 998531 1 2348999999999999999999999999999998765 24577889999999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
+.||++|+.+++.|+|+++|||+||||+|+|++... .++.....++++.+|.+-
T Consensus 135 ~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~~-----------~~~~~~~~~~~~~LI~~~ 188 (192)
T cd04398 135 MFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDN-----------AADMSFQSRVIETLLDNA 188 (192)
T ss_pred HHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCccc-----------hhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998641 123444567777776654
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.98 E-value=9.3e-32 Score=271.09 Aligned_cols=171 Identities=23% Similarity=0.329 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCC-CCC-CCHHHHHHHHHHHHhhCCCCCCCCC
Q psy3271 594 NTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSD-PLP-GSVHSVAESLLLLLESTAEPLIPYN 671 (781)
Q Consensus 594 ~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~-~~~-~dvh~va~lLK~fLr~LPePLip~~ 671 (781)
..+..||.+|++|++||+++|+++|||||++|+..+++++++.+|++... .+. .|+|++|++||.|||+||+||+|++
T Consensus 12 ~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~ 91 (193)
T cd04382 12 STSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFA 91 (193)
T ss_pred CCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHH
Confidence 45578999999999999999999999999999999999999999988644 333 3999999999999999999999999
Q ss_pred chHHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCc
Q psy3271 672 MHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSA 745 (781)
Q Consensus 672 ~y~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~ 745 (781)
+|+.++++.+. ...++.++.+||+.|+++|.||+.||++|++ ++.|||+++|||+||||+||+.+......+
T Consensus 92 ~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~- 169 (193)
T cd04382 92 LWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPM- 169 (193)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHH-
Confidence 99999988752 4578889999999999999999999999999 999999999999999999999987554432
Q ss_pred cCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 746 RGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 746 ~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
...++...+.++|+.+|....
T Consensus 170 ----~~~~~~~~~~~vve~Li~~~~ 190 (193)
T cd04382 170 ----TILQDTVRQPRVVERLLEIPS 190 (193)
T ss_pred ----HHHHHhHHHHHHHHHHHhCCc
Confidence 355566677778887776543
No 34
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.98 E-value=8.5e-32 Score=274.08 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=152.8
Q ss_pred CCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHhhCCCCCCCCCchH
Q psy3271 597 YSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG--SVHSVAESLLLLLESTAEPLIPYNMHP 674 (781)
Q Consensus 597 ~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~~~--dvh~va~lLK~fLr~LPePLip~~~y~ 674 (781)
..||.+|++|++||+++|+++|||||++|+..+++++++.+|+|....++. ++|++|++||.|||+||+||+|+++|+
T Consensus 7 ~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y~ 86 (206)
T cd04376 7 RQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELYT 86 (206)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 579999999999999999999999999999999999999999998665543 899999999999999999999999999
Q ss_pred HHHHHHh-----hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-----------ccCCChhhhhHhhccccccCCC
Q psy3271 675 ACLTAST-----SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAE-----------ENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 675 ~~~~~~~-----~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~-----------~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
+++.+.+ ..+.++.++.+||+.|+.+|.||+.||++|++|++ .|||+++|||+||||+|+|++.
T Consensus 87 ~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~ 166 (206)
T cd04376 87 AFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQK 166 (206)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCC
Confidence 9998764 34678889999999999999999999999999986 7999999999999999999987
Q ss_pred CCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 739 RSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 739 ~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
+.....+ .......+......++..+|.+-..-|.+|.
T Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 167 SGEREFV-QASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred Ccccccc-hhhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 5442210 0011334455667788888777776666654
No 35
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.97 E-value=1.7e-31 Score=268.27 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=144.8
Q ss_pred CCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCC-CCCCC-CCHHHHHHHHHHHHhhCCCCCCCCCch
Q psy3271 596 SYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGS-SDPLP-GSVHSVAESLLLLLESTAEPLIPYNMH 673 (781)
Q Consensus 596 ~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~-~~~~~-~dvh~va~lLK~fLr~LPePLip~~~y 673 (781)
+..+|.+|++|+++|+++|+++|||||++|+.. +.++++.+|++. ..++. .|+|++|++||+|||+||+||||+++|
T Consensus 12 ~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~~~y 90 (200)
T cd04388 12 PDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAPVY 90 (200)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 367999999999999999999999999999765 678999999863 34443 399999999999999999999999999
Q ss_pred HHHHHHHhh-------HHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC
Q psy3271 674 PACLTASTS-------YVQAKQLIA--SLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS 744 (781)
Q Consensus 674 ~~~~~~~~~-------~~~~~~ll~--~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~ 744 (781)
++++++++. .+.++.++. .||+.|+++|+||+.||++|++|++.|+|+++|||+||||+|||++.+.. .
T Consensus 91 ~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~-~- 168 (200)
T cd04388 91 SEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASS-D- 168 (200)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccc-c-
Confidence 999987642 345677776 79999999999999999999999999999999999999999999987522 2
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhcCCcceec
Q psy3271 745 ARGKSQTQTQARRKANFVYHFLVNDFSELIA 775 (781)
Q Consensus 745 ~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~ 775 (781)
.....++.|+.||.++..|...
T Consensus 169 ---------~~~~~~~vvE~Li~~~~~e~~~ 190 (200)
T cd04388 169 ---------SPEFHIRIIEVLITSEWNERQA 190 (200)
T ss_pred ---------chhhHHHHHHHHHHHHHhhcCC
Confidence 2345688999999988766653
No 36
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=1.8e-31 Score=269.32 Aligned_cols=160 Identities=20% Similarity=0.360 Sum_probs=142.3
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhcc-ccCCCceeccCCHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHG-LKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~G-l~~eGIFR~~G~~~~v~~lr~ 635 (781)
+||+||++++++.+ .......||.+|++|++||+++| +.+|||||++|+..+++++++
T Consensus 1 vFGv~L~~~~~~~~---------------------~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~ 59 (190)
T cd04400 1 IFGSPLEEAVELSS---------------------HKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKE 59 (190)
T ss_pred CCCCcHHHHHHHhc---------------------cccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHH
Confidence 69999999998765 11123679999999999999986 799999999999999999999
Q ss_pred HHhcCCCCCC-----CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-------hHHHHHHHhhcCCHHHHHHHHH
Q psy3271 636 WLDTGSSDPL-----PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-------SYVQAKQLIASLPLCSRNVYLY 703 (781)
Q Consensus 636 ~ld~g~~~~~-----~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-------~~~~~~~ll~~LP~~n~~~L~y 703 (781)
.+|++...++ ..|+|++|++||.|||+||+||+|.++|+.+..+.+ ....++.++++||+.|+.+|.+
T Consensus 60 ~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~ 139 (190)
T cd04400 60 RFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYV 139 (190)
T ss_pred HHcCCCCCCccccccccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999865442 238999999999999999999999999999987654 2457788999999999999999
Q ss_pred HHHHHHHHHHhhcccCCChhhhhHhhccccccCC
Q psy3271 704 LCSFLQELLSHAEENRLDAKTIATLFGQIFLRDP 737 (781)
Q Consensus 704 L~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~ 737 (781)
|+.||++|+++++.|+||++|||+||||+|++++
T Consensus 140 L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~ 173 (190)
T cd04400 140 LFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPA 173 (190)
T ss_pred HHHHHHHHHHhccccCCChHHhhhhcCCCCCCCH
Confidence 9999999999999999999999999999998764
No 37
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=9.7e-31 Score=262.43 Aligned_cols=161 Identities=21% Similarity=0.364 Sum_probs=143.1
Q ss_pred CCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCC-CCC---CCCHHHHHHHHHHHHhhCCCCCCCCCc
Q psy3271 597 YSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSS-DPL---PGSVHSVAESLLLLLESTAEPLIPYNM 672 (781)
Q Consensus 597 ~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~-~~~---~~dvh~va~lLK~fLr~LPePLip~~~ 672 (781)
..||.+|.+|++||+++|+++|||||.+|+..+++++++.++++.. ..+ ..|+|++|++||.|||+||+||||+++
T Consensus 13 ~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~~ 92 (184)
T cd04385 13 NDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSEL 92 (184)
T ss_pred CCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 5799999999999999999999999999999999999999988642 222 238999999999999999999999999
Q ss_pred hHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCcc
Q psy3271 673 HPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSAR 746 (781)
Q Consensus 673 y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~ 746 (781)
|++++.+.+ ....++.++.+||+.|+.+|.+|+.||++|+++++.|+|+++|||+||||+|+|++++ .
T Consensus 93 ~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~--~---- 166 (184)
T cd04385 93 HAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH--S---- 166 (184)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc--c----
Confidence 999998764 2457889999999999999999999999999999999999999999999999999875 1
Q ss_pred CcchhHHHHHHHHHHHHHHHhc
Q psy3271 747 GKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 747 ~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
......+++++..+|.+
T Consensus 167 -----~~~~~~~~~v~~~Li~~ 183 (184)
T cd04385 167 -----VGQTSHEVKVIEDLIDN 183 (184)
T ss_pred -----hhHHHHHHHHHHHHHhc
Confidence 22566888888888764
No 38
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=2.6e-30 Score=263.63 Aligned_cols=167 Identities=23% Similarity=0.339 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHH
Q psy3271 602 EIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLP---GSVHSVAESLLLLLESTAEPLIPYNMHPACLT 678 (781)
Q Consensus 602 ~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~~---~dvh~va~lLK~fLr~LPePLip~~~y~~~~~ 678 (781)
.|++|++||++ |+++|||||++|+..++++|++.+|+|...++. .++|++|++||.|||+||+||+|.++|+.++.
T Consensus 12 ~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~ 90 (208)
T cd04392 12 QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQ 90 (208)
T ss_pred HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHH
Confidence 78999999999 999999999999999999999999999876653 28999999999999999999999999999876
Q ss_pred HHh------------------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCC
Q psy3271 679 AST------------------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRS 740 (781)
Q Consensus 679 ~~~------------------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~ 740 (781)
+.+ ..+.++.++.+||++|+.+|.||+.||++|+++++.|||++.|||+||||+|++++...
T Consensus 91 i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~ 170 (208)
T cd04392 91 IADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLT 170 (208)
T ss_pred HHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCCC
Confidence 542 13466788999999999999999999999999999999999999999999999976422
Q ss_pred CCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecC
Q psy3271 741 RDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAP 776 (781)
Q Consensus 741 ~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~ 776 (781)
... .+....+...++..||.+...-|-+|
T Consensus 171 ~~~-------~~~~~~~~~~iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 171 PED-------LHENAQKLNSIVTFMIKHSQKLFKAP 199 (208)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 211 12233445567776666655555444
No 39
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=8.8e-30 Score=258.36 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=134.7
Q ss_pred CcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH-HhcC----CCCCCC---CCHHHHHHHHHHHHhhCCCCCCCC
Q psy3271 599 VPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW-LDTG----SSDPLP---GSVHSVAESLLLLLESTAEPLIPY 670 (781)
Q Consensus 599 IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~-ld~g----~~~~~~---~dvh~va~lLK~fLr~LPePLip~ 670 (781)
-|.+|.+|++||+++|+++|||||++|+..++++++.. +|.+ ...++. .|+|++|++||+|||+||+||||+
T Consensus 28 ~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~ 107 (203)
T cd04374 28 GFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTY 107 (203)
T ss_pred cHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCH
Confidence 35689999999999999999999999999999999875 5654 123332 389999999999999999999999
Q ss_pred CchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC
Q psy3271 671 NMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS 744 (781)
Q Consensus 671 ~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~ 744 (781)
++|+.++.+.+ +...++.++.+||+.|+.+|.||+.||++|+++++.|||+++|||+||||+|+|++.....
T Consensus 108 ~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~-- 185 (203)
T cd04374 108 ELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVA-- 185 (203)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHH--
Confidence 99999998765 2457789999999999999999999999999999999999999999999999998753221
Q ss_pred ccCcchhHHHHHHHHHHHHHHHh
Q psy3271 745 ARGKSQTQTQARRKANFVYHFLV 767 (781)
Q Consensus 745 ~~~~~q~~~~~~~~~~fv~~fL~ 767 (781)
..........+++.+|.
T Consensus 186 ------~~~~~~~~~~vve~LIe 202 (203)
T cd04374 186 ------AIMDIKFQNIVVEILIE 202 (203)
T ss_pred ------HHHHhHHHHHHhhhHhc
Confidence 23344444556665554
No 40
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.6e-29 Score=258.62 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=148.0
Q ss_pred cccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhcc--ccCC----CceeccCCHHHHH
Q psy3271 558 FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHG--LKQQ----NLFEHPGLPSEIL 631 (781)
Q Consensus 558 FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~G--l~~e----GIFR~~G~~~~v~ 631 (781)
||+||+.+++..+ ..||.+|.+|++||+++| +..+ ||||.+|+...++
T Consensus 1 FGv~L~~~~~~~~--------------------------~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~ 54 (212)
T cd04399 1 FGVDLETRCRLDK--------------------------KVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETH 54 (212)
T ss_pred CCCcHHHHHhhcC--------------------------CCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHH
Confidence 9999999999765 469999999999999974 3333 9999999999999
Q ss_pred HHHHHHhcCCCCCC------CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------------hHHHHHHHhhcC
Q psy3271 632 LIRNWLDTGSSDPL------PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------------SYVQAKQLIASL 693 (781)
Q Consensus 632 ~lr~~ld~g~~~~~------~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------------~~~~~~~ll~~L 693 (781)
+||+.+|++...+. ..++|++|++||.|||+||+||+|+++|+.+.++.. ....++.++.+|
T Consensus 55 ~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~L 134 (212)
T cd04399 55 QLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQL 134 (212)
T ss_pred HHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHC
Confidence 99999999865532 238999999999999999999999999999876532 345788999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccc---CCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 694 PLCSRNVYLYLCSFLQELLSHAEEN---RLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 694 P~~n~~~L~yL~~fL~~V~~~s~~N---kM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
|++|+.+|.+|+.||.+|+.+++.| ||+++|||+||||+|+|++....... ...-..+++..+|.+..
T Consensus 135 P~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~---------~~~~~~~~~e~Li~~~~ 205 (212)
T cd04399 135 PKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTI---------GDKHGYKFFRDLLTHKD 205 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCccccccc---------ccHHHHHHHHHHHHhHH
Confidence 9999999999999999999987666 59999999999999999876544321 22334567776666554
No 41
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=3e-29 Score=254.78 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=95.4
Q ss_pred ccccCceEEEEEEecCeEEEEEEecCCCCcchH-----------HHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecc
Q psy3271 149 KLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEF-----------ERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGD 217 (781)
Q Consensus 149 ~~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GD 217 (781)
.++.||.+.+|++++++.|||||+||.++..|+ ..|.++|..|+.+.. ..+..++++|||||
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~-------~~~~~~~~lF~fGD 136 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS-------AFISPSDPLFIFGD 136 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh-------hccCCCCcEEEecc
Confidence 378999999999999999999999999998774 457888989987643 23456799999999
Q ss_pred cCCcccCCCHHHHHH-H------Hh------cCChhhhhchhHHHHHHHc-------------CCcccCCccccccccCc
Q psy3271 218 LNYRITDLDLTKVKN-L------IN------AGKYQTILEHDQLTRQHAK-------------GNVFLGYKEGAIHFRPT 271 (781)
Q Consensus 218 lNyRi~~~~~~~v~~-~------i~------~~~~~~Ll~~DqL~~~~~~-------------~~~f~~f~E~~I~F~PT 271 (781)
||||+++..+.+..+ . ++ ...|.+|++.|||.++++. .+.|.++.|+||+||||
T Consensus 137 fNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~FpPT 216 (356)
T PTZ00312 137 FNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFPPT 216 (356)
T ss_pred ceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCCCc
Confidence 999999544432221 1 11 2468999999999999985 56777999999999999
Q ss_pred cc
Q psy3271 272 YK 273 (781)
Q Consensus 272 YK 273 (781)
||
T Consensus 217 Yk 218 (356)
T PTZ00312 217 YP 218 (356)
T ss_pred ch
Confidence 99
No 42
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.95 E-value=9.3e-28 Score=239.04 Aligned_cols=163 Identities=28% Similarity=0.474 Sum_probs=143.8
Q ss_pred CCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCC--C-CCCHHHHHHHHHHHHhhCCCCCCCCCchH
Q psy3271 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDP--L-PGSVHSVAESLLLLLESTAEPLIPYNMHP 674 (781)
Q Consensus 598 ~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~--~-~~dvh~va~lLK~fLr~LPePLip~~~y~ 674 (781)
.||.+|++|++||+++|+++|||||.+|+..+++++++.+|++...+ . ..|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 48999999999999999999999999999999999999999997654 2 33999999999999999999999999999
Q ss_pred HHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCc
Q psy3271 675 ACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGK 748 (781)
Q Consensus 675 ~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~ 748 (781)
.++++.+. ...++.++++||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|+|++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~------ 155 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVA------ 155 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHH------
Confidence 99987762 567899999999999999999999999999999999999999999999999999874432
Q ss_pred chhHHHHHHHHHHHHHHHhc
Q psy3271 749 SQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 749 ~q~~~~~~~~~~fv~~fL~~ 768 (781)
.........++++.++.+
T Consensus 156 --~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 156 --SLKDIRHQNTVVETLIEN 173 (174)
T ss_pred --HHHHHHHHHHHHHHHHhc
Confidence 133455566677766654
No 43
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.94 E-value=1.3e-26 Score=229.12 Aligned_cols=160 Identities=26% Similarity=0.406 Sum_probs=143.2
Q ss_pred cHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCC-C-CCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHH
Q psy3271 600 PKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSD-P-LPGSVHSVAESLLLLLESTAEPLIPYNMHPACL 677 (781)
Q Consensus 600 P~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~-~-~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~ 677 (781)
|.+|++|++||+++|+.+|||||.+|+..+++++++.++.+... . ...++|++|++||.|||+||+||+|.+.|+.++
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999865 2 234999999999999999999999999999999
Q ss_pred HHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchh
Q psy3271 678 TAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQT 751 (781)
Q Consensus 678 ~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~ 751 (781)
.+.. ..+.++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++.+. . ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~--~------~~ 152 (169)
T cd00159 81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD--D------EL 152 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc--H------HH
Confidence 8874 56788999999999999999999999999999999999999999999999999998755 1 13
Q ss_pred HHHHHHHHHHHHHHHh
Q psy3271 752 QTQARRKANFVYHFLV 767 (781)
Q Consensus 752 ~~~~~~~~~fv~~fL~ 767 (781)
........++++.+|.
T Consensus 153 ~~~~~~~~~~~~~li~ 168 (169)
T cd00159 153 LEDIKKLNEIVEFLIE 168 (169)
T ss_pred HHHhHHHHHHHHHHHh
Confidence 4456667777777765
No 44
>KOG2200|consensus
Probab=99.93 E-value=6e-26 Score=248.28 Aligned_cols=196 Identities=21% Similarity=0.258 Sum_probs=163.8
Q ss_pred ccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHH
Q psy3271 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 555 ~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr 634 (781)
..+||+||..++.+++ ..+|.+|.+++.||+++|++++||||++|...+|+.||
T Consensus 298 ~~vFGVPL~vll~rtG--------------------------~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lr 351 (674)
T KOG2200|consen 298 GGVFGVPLTVLLQRTG--------------------------QPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLR 351 (674)
T ss_pred CceeecCceeeeccCC--------------------------CcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHH
Confidence 4799999999988766 67999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHH
Q psy3271 635 NWLDTGSS---DPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYL 704 (781)
Q Consensus 635 ~~ld~g~~---~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL 704 (781)
+.++..-. +..+. ..|++|++||+|||+||+||+|.++.+.|+..++ ...+++.+|-.||.+||++|+.|
T Consensus 352 q~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktL 431 (674)
T KOG2200|consen 352 QMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTL 431 (674)
T ss_pred HHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 99987532 23333 7899999999999999999999999999998886 35677888899999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC----------ccCcchhHHHHHHHHHHHHHHHhcCCccee
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS----------ARGKSQTQTQARRKANFVYHFLVNDFSELI 774 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~----------~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~ 774 (781)
+.||++|+.+++.|+||+.|||+||||+||.......+++ +......+.+...+.+.+.+||..-..-+-
T Consensus 432 L~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 432 LEFLNDVIANEEENQMTLMNLSVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred HHHHHHHHHhHhhcccchhhhhhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998654333311 112233456777788888888876544444
Q ss_pred cC
Q psy3271 775 AP 776 (781)
Q Consensus 775 ~~ 776 (781)
+|
T Consensus 512 VP 513 (674)
T KOG2200|consen 512 VP 513 (674)
T ss_pred ch
Confidence 44
No 45
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.93 E-value=9.1e-26 Score=219.22 Aligned_cols=140 Identities=31% Similarity=0.505 Sum_probs=127.0
Q ss_pred cHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCC--CC-CCCHHHHHHHHHHHHhhCCCCCCCCCchHHH
Q psy3271 600 PKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSD--PL-PGSVHSVAESLLLLLESTAEPLIPYNMHPAC 676 (781)
Q Consensus 600 P~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~--~~-~~dvh~va~lLK~fLr~LPePLip~~~y~~~ 676 (781)
|.+|..|++||+++|+.++||||.+|+..+++++++.++.+... .. ..|+|++|++||.||++||+||+|.++|+.+
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 89999999999999999999999999999999999999999865 33 3399999999999999999999999999999
Q ss_pred HHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCC
Q psy3271 677 LTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPR 739 (781)
Q Consensus 677 ~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~ 739 (781)
+.+.+ ..+.++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 96533 3567899999999999999999999999999999999999999999999999999864
No 46
>KOG4269|consensus
Probab=99.91 E-value=7.8e-25 Score=247.50 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=145.3
Q ss_pred CCCcHHHHHHHHHHH-hccccCCCceeccCCHHHHHHHHHHHhcCCCCCC-----CCCHHHHHHHHHHHHhhCCCCCCCC
Q psy3271 597 YSVPKEIWFLVDHLY-RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL-----PGSVHSVAESLLLLLESTAEPLIPY 670 (781)
Q Consensus 597 ~~IP~~l~~~i~~L~-~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~-----~~dvh~va~lLK~fLr~LPePLip~ 670 (781)
..+|.++++|++||+ .+|+++|||||++|.+..|++|++.||.+-..++ +-|||++|++||+|||+||+||+..
T Consensus 917 s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~d 996 (1112)
T KOG4269|consen 917 SGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTD 996 (1112)
T ss_pred cCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccch
Confidence 569999999999999 6799999999999999999999999999833332 2289999999999999999999999
Q ss_pred CchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC
Q psy3271 671 NMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS 744 (781)
Q Consensus 671 ~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~ 744 (781)
++|..|..... ....+.++|.+||++|..+|.+|+.||++|++++..|||+++|||+||+|+|.+|.+-....
T Consensus 997 e~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPse~~~~l- 1075 (1112)
T KOG4269|consen 997 EMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPSEIESKL- 1075 (1112)
T ss_pred hhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcHHhhhhh-
Confidence 99999987654 23456889999999999999999999999999999999999999999999999987633222
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhcCCc
Q psy3271 745 ARGKSQTQTQARRKANFVYHFLVNDFS 771 (781)
Q Consensus 745 ~~~~~q~~~~~~~~~~fv~~fL~~~~~ 771 (781)
..+..-..+.....++..++++..+..
T Consensus 1076 i~n~d~if~dv~~q~q~~~~~~d~~~~ 1102 (1112)
T KOG4269|consen 1076 ILNYDHIFTDVMRQVQVLLYELDSDVI 1102 (1112)
T ss_pred ccchhhhhccchHHHHHHHHhhcCCCC
Confidence 112112334566777778887766653
No 47
>KOG1450|consensus
Probab=99.91 E-value=2.1e-24 Score=243.32 Aligned_cols=182 Identities=23% Similarity=0.393 Sum_probs=156.8
Q ss_pred ccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHH
Q psy3271 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 555 ~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr 634 (781)
..+||++|+.||.++. ..||.+|..|++.++.+|++.+||||++|+...+++||
T Consensus 454 ~~vFGs~Lealc~rE~--------------------------~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr 507 (650)
T KOG1450|consen 454 DKVFGSPLEALCQREN--------------------------GLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLR 507 (650)
T ss_pred CcccCccHHHHhhccC--------------------------CCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHH
Confidence 5799999999999987 57999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHH
Q psy3271 635 NWLDTGSSDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYL 704 (781)
Q Consensus 635 ~~ld~g~~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL 704 (781)
.++|.....++. .|+|.|+++||.|||+||+||+|..+...|..+.+ ..+...+++..||++|+.|+.||
T Consensus 508 ~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 508 EQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYL 587 (650)
T ss_pred HhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHH
Confidence 999977666553 38999999999999999999999999999998876 35678899999999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
+.||++|++|++.|||+.+|||+||||+|+++....... ....--..+.|+.||.+-.
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~~~~--------a~~~~~~~~ivq~lle~~~ 645 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQETSSE--------AIHSTYQSQIVQLLLENVS 645 (650)
T ss_pred HHHHHHHHhccccccccccceEEEeccccccccccccch--------hhHHhHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999954432222 1133344456666665543
No 48
>KOG4270|consensus
Probab=99.91 E-value=2.1e-24 Score=243.06 Aligned_cols=210 Identities=26% Similarity=0.336 Sum_probs=159.1
Q ss_pred CCeEEEEEEEEEchhhhhhhccccccccc-eEEEeeecCCceEEEeeccccccccccchhhhhhccCccccccchhhhhh
Q psy3271 505 GEKCDVKLEVYVDKRCASKMNSGQDKIYD-ILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIEL 583 (781)
Q Consensus 505 ge~~~i~~~~~vd~~~a~~ln~g~~~l~d-iLvL~le~G~d~FI~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l 583 (781)
-|.+..+|+..=|...+..+..-.-.++. -+++.+|...++.--. ..-..++||++++.+-.-..
T Consensus 94 ~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rra-ls~~~~vfgv~~~s~Q~s~~------------- 159 (577)
T KOG4270|consen 94 EEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRA-LSASETVFGVSTEAMQLSYD------------- 159 (577)
T ss_pred HHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhcccccccc-ccchhhhhcchHHhhhcccc-------------
Confidence 34455555555555544444321111111 4566666555542221 23344789988887644332
Q ss_pred ccccCCCCCCCCCCCCcHHHHHHHH-HHH-hccccCCCceeccCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHH
Q psy3271 584 ESSKDSGTLSNTSYSVPKEIWFLVD-HLY-RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDP-LPGSVHSVAESLLLLL 660 (781)
Q Consensus 584 ~~~~~~~~~~~~~~~IP~~l~~~i~-~L~-~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~-~~~dvh~va~lLK~fL 660 (781)
.....+|.++..+.+ +++ +.|++.|||||++|...+++.+|++||.|.... ...|||++|++||.||
T Consensus 160 ----------~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayL 229 (577)
T KOG4270|consen 160 ----------PRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYL 229 (577)
T ss_pred ----------cCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHH
Confidence 111227999988888 666 569999999999999999999999999996433 2469999999999999
Q ss_pred hhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccc
Q psy3271 661 ESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFL 734 (781)
Q Consensus 661 r~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Ll 734 (781)
|+||+|++++++|++|+.+.+ ..+.+++++..||+.|+.+|.|+|.||..|.++++.|||+++|||+||||+|+
T Consensus 230 RELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~ 309 (577)
T KOG4270|consen 230 RELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLL 309 (577)
T ss_pred HhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCcc
Confidence 999999999999999986664 23466777889999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy3271 735 RDPP 738 (781)
Q Consensus 735 r~~~ 738 (781)
+...
T Consensus 310 ~~~~ 313 (577)
T KOG4270|consen 310 WMKD 313 (577)
T ss_pred ccCC
Confidence 9987
No 49
>KOG4407|consensus
Probab=99.91 E-value=1.7e-24 Score=250.14 Aligned_cols=169 Identities=18% Similarity=0.272 Sum_probs=148.3
Q ss_pred CCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCC-------CCCCHHHHHHHHHHHHhhCCCCC
Q psy3271 595 TSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDP-------LPGSVHSVAESLLLLLESTAEPL 667 (781)
Q Consensus 595 ~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~-------~~~dvh~va~lLK~fLr~LPePL 667 (781)
+...||.+|.-|+..++.+||++.||||+||+...|.+|++.++++.... -..|+++|.++||.|||.|||||
T Consensus 1170 ~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL 1249 (1973)
T KOG4407|consen 1170 CNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPL 1249 (1973)
T ss_pred ccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCccc
Confidence 44679999999999999999999999999999999999999999985311 12389999999999999999999
Q ss_pred CCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCC
Q psy3271 668 IPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSR 741 (781)
Q Consensus 668 ip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~ 741 (781)
+|..+|..|+++-. ++..++.+|++||..||.+|++|+.||.+|+.|+++|||-++|||++|||.|+|++.+..
T Consensus 1250 ~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm 1329 (1973)
T KOG4407|consen 1250 LTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNM 1329 (1973)
T ss_pred ccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccH
Confidence 99999999999865 355789999999999999999999999999999999999999999999999999987654
Q ss_pred CCCccCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 742 DPSARGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 742 ~~~~~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
.. ..+.+....++|+.||..++
T Consensus 1330 ~t-------mVthM~dQckIVEtLI~~~d 1351 (1973)
T KOG4407|consen 1330 AT-------MVTHMSDQCKIVETLIHYND 1351 (1973)
T ss_pred HH-------HhhcchhhhhHHHHHHhhhh
Confidence 43 34455666778888777664
No 50
>KOG0565|consensus
Probab=99.89 E-value=3.8e-23 Score=199.78 Aligned_cols=139 Identities=42% Similarity=0.683 Sum_probs=123.6
Q ss_pred ceEEEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeeccccccc
Q psy3271 71 AYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKL 150 (781)
Q Consensus 71 ~Y~~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~ 150 (781)
.|..+.+.+++|+.+.+|++.++.. ++.+++..++++|+++.+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------~~~~~~~~~v~~g~~~~~ 44 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLD-------------------------------------HSFNVRVSEVGTGIMGYL 44 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhh-------------------------------------hhcccEEEEecceEEEEe
Confidence 4899999999999999999999999 899999999999999999
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcchHHH-HHhhHHHHHHhcCcCC---CCCCCCCCC-CcceeEecccCCcccCC
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFER-RNQDFHDIDSRIAFTG---FLPPKSIKD-HDQIYWLGDLNYRITDL 225 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~-Rn~d~~~I~~~l~f~~---~~~~~~i~~-~d~~f~~GDlNyRi~~~ 225 (781)
||||+|++++.++++++|||+|||+||..+..+ ||+||.+|+.++.|.. ...+..+.. ||.+||+||||||+.+.
T Consensus 45 ~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 45 GNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred CCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 999999999999999999999999999999888 9999999999999982 223333333 89999999999999954
Q ss_pred CHHHHHHHHhcCChhhhhchh
Q psy3271 226 DLTKVKNLINAGKYQTILEHD 246 (781)
Q Consensus 226 ~~~~v~~~i~~~~~~~Ll~~D 246 (781)
++..++..+..+.++.|+++|
T Consensus 125 ~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 125 SYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccccchhhhhhcchhhhhccC
Confidence 477788888888888888765
No 51
>KOG4406|consensus
Probab=99.88 E-value=5.9e-23 Score=217.83 Aligned_cols=190 Identities=25% Similarity=0.349 Sum_probs=160.9
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhcc-ccCCCceeccCCHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHG-LKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~G-l~~eGIFR~~G~~~~v~~lr 634 (781)
.-||+||+-+.+... ....||.++..||++|.++| +++||+||.+++...+.+++
T Consensus 252 ~qFgvpLqf~~~~~~------------------------e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q 307 (467)
T KOG4406|consen 252 QQFGVPLQFIPEKNP------------------------EGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQ 307 (467)
T ss_pred hhcCccHHHhcccCc------------------------ccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHH
Confidence 469999998877553 22469999999999999999 99999999999999999999
Q ss_pred HHHhcCCCCCCCC--CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----hHHHHHHHhhc-CCHHHHHHHHHHHH
Q psy3271 635 NWLDTGSSDPLPG--SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----SYVQAKQLIAS-LPLCSRNVYLYLCS 706 (781)
Q Consensus 635 ~~ld~g~~~~~~~--dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----~~~~~~~ll~~-LP~~n~~~L~yL~~ 706 (781)
+..|+|.++++.. ++|+.|.+||.|||+||+||++.++|+.+....+ ....+.++++. ||+.|+.+++|+++
T Consensus 308 ~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~s 387 (467)
T KOG4406|consen 308 ELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISS 387 (467)
T ss_pred HHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHH
Confidence 9999999998865 7999999999999999999999999999876544 34577889986 99999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCCC
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPVN 778 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~~ 778 (781)
||.+|++|+..|+||+.|||.||||+|+++..... ...+-..-..|...+|.+....+..++|
T Consensus 388 fL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~---------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 388 FLVQISDNSKENKMTASNLAVVFGPNLLWAQDESL---------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred HHHHHHHhHHHhhhccccceeeecccccccccccc---------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 99999999999999999999999999999874222 2233344455777777776666666664
No 52
>KOG2710|consensus
Probab=99.88 E-value=2.2e-22 Score=218.72 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=152.2
Q ss_pred CCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCC----CCC-CCC-CHHHHHHHHHHHHhhCCCCC
Q psy3271 594 NTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGS----SDP-LPG-SVHSVAESLLLLLESTAEPL 667 (781)
Q Consensus 594 ~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~----~~~-~~~-dvh~va~lLK~fLr~LPePL 667 (781)
..-..||.++.+|+.||.++|+.+.||||++|+..++++|+++||++. ... ++. ++|++|++||.|||+||+||
T Consensus 89 ~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pL 168 (412)
T KOG2710|consen 89 PGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPL 168 (412)
T ss_pred ccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCccc
Confidence 344679999999999999999999999999999999999999999983 222 233 89999999999999999999
Q ss_pred CCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhccc-----------CCChhhhhHhhc
Q psy3271 668 IPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEEN-----------RLDAKTIATLFG 730 (781)
Q Consensus 668 ip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~N-----------kM~~~nLA~vfa 730 (781)
||.++|+.|+..+. .+..++.++..||+.|+++|.+|+.||+.++.|++.| +|++.|||+||+
T Consensus 169 LP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~ 248 (412)
T KOG2710|consen 169 LPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFG 248 (412)
T ss_pred CCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhc
Confidence 99999999998775 2446777888999999999999999999999999999 999999999999
Q ss_pred cccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 731 QIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 731 P~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
|++++..........-............++|++.|+.|....+.+|.
T Consensus 249 P~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~ip~ 295 (412)
T KOG2710|consen 249 PNILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQIPP 295 (412)
T ss_pred chhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhcCCc
Confidence 99999633111111111111234566778899999998887777654
No 53
>KOG1117|consensus
Probab=99.87 E-value=2.6e-22 Score=225.93 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=165.9
Q ss_pred ccceEEEeeecCCceEEEeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHH
Q psy3271 531 IYDILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHL 610 (781)
Q Consensus 531 l~diLvL~le~G~d~FI~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L 610 (781)
-.++|+| ++.|+..||.-.+...-+.+-..++.+....+ ..+.++ +-....||.++.+||.|+
T Consensus 676 K~~~l~l-ve~grTLYI~g~~rldft~W~~AIekaa~~~g-------t~Lqeq---------qLs~~dIPvIVd~CI~FV 738 (1186)
T KOG1117|consen 676 KLDVLVL-VEKGRTLYIQGETRLDFTVWHTAIEKAAGTDG-------TALQEQ---------QLSKNDIPVIVDSCIAFV 738 (1186)
T ss_pred cccceEE-EeeccEEEEecCCcchHHHHHHHHHHHhcCCc-------chhhhh---------hccCCCCcEehHHHHHHH
Confidence 3467776 89999999999999998999888888877765 333332 234467999999999999
Q ss_pred HhccccCCCceeccCCHHHHHHHHHHHhcCCC-CCC---CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----
Q psy3271 611 YRHGLKQQNLFEHPGLPSEILLIRNWLDTGSS-DPL---PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST----- 681 (781)
Q Consensus 611 ~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~-~~~---~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~----- 681 (781)
.++|+..|||||+.|...++..|.+.|..+.. +.+ ...+.+|+++||+|||+|++||+|.++|..|+++++
T Consensus 739 TqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~ 818 (1186)
T KOG1117|consen 739 TQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDK 818 (1186)
T ss_pred HHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchH
Confidence 99999999999999999999999999977643 222 226889999999999999999999999999999886
Q ss_pred -hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 682 -SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 682 -~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
......++|..||..||.||+.|+.||.+|.++++.|+|+++|||.||||+||....
T Consensus 819 Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg 876 (1186)
T KOG1117|consen 819 ERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG 876 (1186)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC
Confidence 245678899999999999999999999999999999999999999999999999753
No 54
>KOG3564|consensus
Probab=99.86 E-value=4e-21 Score=205.56 Aligned_cols=148 Identities=19% Similarity=0.366 Sum_probs=133.1
Q ss_pred CCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHHHHhhCCCCCCCCCc
Q psy3271 595 TSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLP--GSVHSVAESLLLLLESTAEPLIPYNM 672 (781)
Q Consensus 595 ~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~~--~dvh~va~lLK~fLr~LPePLip~~~ 672 (781)
...-||..|..|+..|+++|+.++||||++|....+++|++.+-.++..+.- .|+|++|++||.|||+|.|||||..+
T Consensus 358 ~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~ 437 (604)
T KOG3564|consen 358 TAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRL 437 (604)
T ss_pred ccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchH
Confidence 3456999999999999999999999999999999999999999998764432 39999999999999999999999999
Q ss_pred hHHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCC
Q psy3271 673 HPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP 743 (781)
Q Consensus 673 y~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~ 743 (781)
..+|+.++.. +.++.+.+..||..||.+|.|||-|+++|++ +..++|+..|||.+|||+++..+-.++++
T Consensus 438 ~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~ 513 (604)
T KOG3564|consen 438 RRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQ 513 (604)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccH
Confidence 9999998862 4577788899999999999999999999886 88899999999999999999987664444
No 55
>KOG1453|consensus
Probab=99.83 E-value=1.5e-20 Score=228.04 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=146.6
Q ss_pred ccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHH
Q psy3271 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNW 636 (781)
Q Consensus 557 ~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ 636 (781)
.||.+|..+++... ..||.++.+|+.+|+.+|+..|||||++|...+++.|...
T Consensus 602 ~fG~~l~~~~~~e~--------------------------~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~ 655 (918)
T KOG1453|consen 602 LFGVSLSELARYEP--------------------------STVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAV 655 (918)
T ss_pred cccHHHHHhhccCC--------------------------CCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHH
Confidence 89999999988765 6799999999999999999999999999999999999999
Q ss_pred HhcCCC-CCC-CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh------------HHHHHHHhhcCCHHHHHHHH
Q psy3271 637 LDTGSS-DPL-PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS------------YVQAKQLIASLPLCSRNVYL 702 (781)
Q Consensus 637 ld~g~~-~~~-~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~------------~~~~~~ll~~LP~~n~~~L~ 702 (781)
++++.. ..+ +.|+|+++++||+|||.||+|||++.+|+.|+.+... ...+.+++..||+.|+++|.
T Consensus 656 ~e~~~~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~ 735 (918)
T KOG1453|consen 656 FENGDALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLR 735 (918)
T ss_pred hcCCccceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHH
Confidence 999862 223 3499999999999999999999999999999987753 34677899999999999999
Q ss_pred HHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCC
Q psy3271 703 YLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP 743 (781)
Q Consensus 703 yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~ 743 (781)
+|+.||.+|+.+++.|+|++.|||+||||+|+|++++....
T Consensus 736 ~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~~~~ 776 (918)
T KOG1453|consen 736 RLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGTRDL 776 (918)
T ss_pred HHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCcchh
Confidence 99999999999999999999999999999999999876655
No 56
>KOG1451|consensus
Probab=99.79 E-value=1.5e-19 Score=197.14 Aligned_cols=138 Identities=22% Similarity=0.380 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHH-hcCCCCCCC-----C-CHHHHHHHHHHHHhhCCCCCCCCCch
Q psy3271 601 KEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWL-DTGSSDPLP-----G-SVHSVAESLLLLLESTAEPLIPYNMH 673 (781)
Q Consensus 601 ~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~l-d~g~~~~~~-----~-dvh~va~lLK~fLr~LPePLip~~~y 673 (781)
.+|.+||+.|+..|++++|+||..|...++++|...+ |-..+.+.+ . ++-++.+.||.|||.|||||++++++
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 5789999999999999999999999999999887765 333222221 1 67899999999999999999999999
Q ss_pred HHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 674 PACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 674 ~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
..|+.|++ +.++++.++.+||..||..|..|+.||..|+.|+..|.||..||++||||+|+|+.+
T Consensus 470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE 540 (812)
T KOG1451|consen 470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE 540 (812)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH
Confidence 99999987 367899999999999999999999999999999999999999999999999999876
No 57
>KOG1976|consensus
Probab=99.79 E-value=1.1e-19 Score=185.24 Aligned_cols=145 Identities=27% Similarity=0.474 Sum_probs=96.4
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCcchH-----------HHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEeccc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEF-----------ERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDL 218 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDl 218 (781)
++.||-...|++|++..|.|||.||-....++ ..|.+.....+++|.=.+ ...|.+|+||||
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~-------~~~~~~fVfGdf 226 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG-------LRNDAIFVFGDF 226 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc-------cCceEEEEeccc
Confidence 67899999999999999999999996554443 457777777777765321 345799999999
Q ss_pred CCcccCCCH----------HHHHHH--------Hh---------------cCChhhhhchhHHHHH--------HHcCCc
Q psy3271 219 NYRITDLDL----------TKVKNL--------IN---------------AGKYQTILEHDQLTRQ--------HAKGNV 257 (781)
Q Consensus 219 NyRi~~~~~----------~~v~~~--------i~---------------~~~~~~Ll~~DqL~~~--------~~~~~~ 257 (781)
|||+++-+. +.+.+. |. .+.|+ -..+|-+... -++-..
T Consensus 227 NfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FD-yfnh~~f~d~~r~~~~~~dkEl~n 305 (391)
T KOG1976|consen 227 NFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFD-YFNHDWFFDLGRGMVKRYDKELAN 305 (391)
T ss_pred ccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcc-hhhhHHHHHcCchhhhhcchHHHH
Confidence 999994221 112111 10 01111 1111111100 011123
Q ss_pred ccC-CccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCC
Q psy3271 258 FLG-YKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDG 302 (781)
Q Consensus 258 f~~-f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~ 302 (781)
|+. ..|..|.|||||.|..+...-.+.++.|+||||||||+..+.
T Consensus 306 f~~kl~E~~i~FpPsypysed~~~~E~~m~TrcPAWcDRILmn~~a 351 (391)
T KOG1976|consen 306 FAFKLKEETIFFPPSYPYSEDDSGKEEFMRTRCPAWCDRILMNDRA 351 (391)
T ss_pred HHHHHhheeecCCCCCCCCcCccchHHHHhccChHhhhhhhcCccH
Confidence 433 789999999999999887766677899999999999996543
No 58
>KOG1452|consensus
Probab=99.72 E-value=1.4e-17 Score=170.46 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=140.0
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||.+|+.+++++. ..-|.++.+|++.++++|++..|+|+.+|+.++.+.||+
T Consensus 183 gvfG~~L~~lV~RE~--------------------------~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~ 236 (442)
T KOG1452|consen 183 GVFGISLSRLVQREP--------------------------ESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRR 236 (442)
T ss_pred cccchhhHhHhhcCC--------------------------CCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHH
Confidence 389999999999876 346899999999999999999999999999999999999
Q ss_pred HHhcCCC-CCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh---------hHHHHHHHhhcCCHHHHHHH
Q psy3271 636 WLDTGSS-DPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST---------SYVQAKQLIASLPLCSRNVY 701 (781)
Q Consensus 636 ~ld~g~~-~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~---------~~~~~~~ll~~LP~~n~~~L 701 (781)
.|..+.. +.+. .|.+.+++++|.||||||||+++...++...++.. +...+-.+|..||..+++.|
T Consensus 237 ~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l 316 (442)
T KOG1452|consen 237 DFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQL 316 (442)
T ss_pred HhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhH
Confidence 9987642 2222 27888999999999999999999999988887753 35567788999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCC
Q psy3271 702 LYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPR 739 (781)
Q Consensus 702 ~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~ 739 (781)
..++.||..|..+++.|+|++..||.+|||.||-+..+
T Consensus 317 ~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~~t 354 (442)
T KOG1452|consen 317 NVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDT 354 (442)
T ss_pred hHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhhcc
Confidence 99999999999999999999999999999999987654
No 59
>KOG0566|consensus
Probab=99.68 E-value=3.5e-17 Score=188.00 Aligned_cols=158 Identities=25% Similarity=0.362 Sum_probs=124.0
Q ss_pred ccCCeeEEeeeeccCCCC--CCCCCccccccC--C---CCCcceecccccc-ccchhhhhcccchhhHHHHHhhhhcCCC
Q psy3271 299 KGDGIQVFIGTWNVNGQS--PSCDLSDWLTTT--V---DPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLHP 370 (781)
Q Consensus 299 ~~~~~~~~~gt~nv~g~~--~~~~l~~wl~~~--~---~~~diy~iG~qE~-~~~~~~~l~~~~~~~~~w~~~~~~~l~~ 370 (781)
..+++.||+|||||||+. ...+|++||++. . .++|||||||||+ +|+++++++++..+...|.+.+.++|+.
T Consensus 533 ~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~~~Wee~i~~~Ln~ 612 (1080)
T KOG0566|consen 533 EPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKRRFWEEKILKTLNR 612 (1080)
T ss_pred cccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChHHHHHHHHHHHHHhcC
Confidence 356789999999999944 467899999997 2 3689999999999 9999999999999999999999999999
Q ss_pred -CcchhhhhhheeccceeeeeeccCCCccccC---------------Cc-ceEEEEEee------------eeecCHHHH
Q psy3271 371 -GAAYQKICLVRLVGIRQQVDYKSVPSLKISD---------------HK-PVMSLFNSD------------IRVIDAVRY 421 (781)
Q Consensus 371 -~~~y~~~~~~~l~g~~~~~~y~s~~~~~~SD---------------Hk-PV~a~f~~~------------~~~v~~~~~ 421 (781)
.++|..+++.||+|+++.++.+......+.| .| .|...|... ...-+-+.|
T Consensus 613 ~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ER 692 (1080)
T KOG0566|consen 613 YKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEER 692 (1080)
T ss_pred CCCceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchHhhh
Confidence 8899999999999999988777533222222 22 566666542 223366789
Q ss_pred HHHHHHHHHHhhhhccccCCceeecCCceeeceeeeec
Q psy3271 422 RKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLE 459 (781)
Q Consensus 422 ~~~~~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~ 459 (781)
+..|.+|.+.+..-....+ -.++..+|+||+|||-
T Consensus 693 n~DY~tI~r~l~Fp~Gr~I---~~HD~ifW~GDFNYRI 727 (1080)
T KOG0566|consen 693 NEDYKTIARKLRFPRGRMI---FSHDYIFWLGDFNYRI 727 (1080)
T ss_pred hhhHHHHHHhccccCCccc---cCCceEEEecccceee
Confidence 9999999999876432221 1245568999999974
No 60
>KOG4271|consensus
Probab=99.58 E-value=1.1e-15 Score=175.20 Aligned_cols=138 Identities=20% Similarity=0.311 Sum_probs=125.3
Q ss_pred CCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHhhCCCCCCCCCch
Q psy3271 597 YSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL---PGSVHSVAESLLLLLESTAEPLIPYNMH 673 (781)
Q Consensus 597 ~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~---~~dvh~va~lLK~fLr~LPePLip~~~y 673 (781)
-.||..+.+|++|++..|+.+|||||++|+..+.+.++..|.....+++ +..+|++|+.+|.|+.+||+|++|++++
T Consensus 930 k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlksffa~Lpeplipys~h 1009 (1100)
T KOG4271|consen 930 KPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKSFFACLPEPLIPYSYH 1009 (1100)
T ss_pred cccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchhhhhhCCCcccCccCC
Confidence 3699999999999999999999999999999999999999988554443 4479999999999999999999999999
Q ss_pred HHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccc
Q psy3271 674 PACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFL 734 (781)
Q Consensus 674 ~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Ll 734 (781)
..+.++..- ...+++.+..||+.|+.+|+|++.||.+|+....+|.|+.+||.+||.+.|+
T Consensus 1010 ~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1010 PRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred cchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence 988887752 3456889999999999999999999999999999999999999999998886
No 61
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.55 E-value=1e-13 Score=138.89 Aligned_cols=144 Identities=11% Similarity=0.174 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHhccccCCCc---eeccCCHHHHHHH-HHHHhcCCC-CC---------CCCCHHHHHHHHHHHHhhCCC
Q psy3271 600 PKEIWFLVDHLYRHGLKQQNL---FEHPGLPSEILLI-RNWLDTGSS-DP---------LPGSVHSVAESLLLLLESTAE 665 (781)
Q Consensus 600 P~~l~~~i~~L~~~Gl~~eGI---FR~~G~~~~v~~l-r~~ld~g~~-~~---------~~~dvh~va~lLK~fLr~LPe 665 (781)
=.++..|++.|+.+|+++++| ||.+++.+.++.+ +..++.+.. .. ...|+|+++++||.+|+.||.
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 356788999999999999999 9999999998877 566665521 11 123899999999999999999
Q ss_pred CCCCC-CchHHHHHHHhh----HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 666 PLIPY-NMHPACLTASTS----YVQAKQLIASL--PLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 666 PLip~-~~y~~~~~~~~~----~~~~~~ll~~L--P~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
++|+. +.|..|...-++ .++...++..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..++
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~ 166 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT 166 (198)
T ss_pred CccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence 99999 999999985432 45788899887 889999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy3271 739 RSRDP 743 (781)
Q Consensus 739 ~~~~~ 743 (781)
....+
T Consensus 167 ~~~~~ 171 (198)
T cd04401 167 GATGP 171 (198)
T ss_pred ccCCc
Confidence 66553
No 62
>KOG4724|consensus
Probab=99.53 E-value=3e-15 Score=166.78 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=165.8
Q ss_pred ceEEEeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceec
Q psy3271 544 DLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEH 623 (781)
Q Consensus 544 d~FI~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~ 623 (781)
+.++..+..-....||.||...|...+ .|+.+..+.-+|-..|.-++||||.
T Consensus 69 ~~~~a~~~~~~~~Lfg~pl~nic~~~~----------------------------lp~p~~d~l~~lc~kgp~t~giFr~ 120 (741)
T KOG4724|consen 69 KVWIASSNTADSFLFGWPLTNICVHFR----------------------------LPEPDEDFLLLLCCKGPCTRGIFRT 120 (741)
T ss_pred hccCCcCCCCCccccCccchhhcccCC----------------------------CCChHHHHHHHHhhcCcccHHHHHH
Confidence 445666666777899999999887543 7888888888898999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHH
Q psy3271 624 PGLPSEILLIRNWLDTGSSDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLC 696 (781)
Q Consensus 624 ~G~~~~v~~lr~~ld~g~~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~ 696 (781)
.++...++++++.|+.|....+.. .++..|.++|.|||.+|.-++..++|+.|..... .+++++++..+||..
T Consensus 121 ~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~ 200 (741)
T KOG4724|consen 121 IANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRS 200 (741)
T ss_pred HHHHHHHHHHHHHhcccccccccccceEEeehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCch
Confidence 999999999999999997776643 8999999999999999999999999999987654 467889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecC
Q psy3271 697 SRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAP 776 (781)
Q Consensus 697 n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~ 776 (781)
|..+|.||...| -+..++..|.|+.-|||+|.+|++++.+...... ......+++.-+-.||+.++ -.|+.
T Consensus 201 n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~e-------~~k~ln~kv~~l~~flI~nc-lrifG 271 (741)
T KOG4724|consen 201 NKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSSE-------FGKGLNGKVPPLPIFLIVNC-LRIFG 271 (741)
T ss_pred HHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccChh-------hhccccCCCCCceeeehhhh-HHhhc
Confidence 999999999999 8889999999999999999999999987643322 22334445555666677666 34555
Q ss_pred CCCCC
Q psy3271 777 VNHPG 781 (781)
Q Consensus 777 ~~~~~ 781 (781)
++.||
T Consensus 272 e~i~~ 276 (741)
T KOG4724|consen 272 EDIEG 276 (741)
T ss_pred ccccc
Confidence 55554
No 63
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.35 E-value=1.9e-12 Score=140.53 Aligned_cols=160 Identities=28% Similarity=0.433 Sum_probs=117.0
Q ss_pred CeeEEeeeeccCCCC--CCCCCccccccCC-----CCCcceecccccc-ccchhhhhcccchhhHHHHHhhhhcCCCCcc
Q psy3271 302 GIQVFIGTWNVNGQS--PSCDLSDWLTTTV-----DPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLHPGAA 373 (781)
Q Consensus 302 ~~~~~~gt~nv~g~~--~~~~l~~wl~~~~-----~~~diy~iG~qE~-~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~ 373 (781)
+++++++||||||.. |..+|.+||.... .+||||+|||||+ ++.+..++.........|...+...+.++..
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~ 81 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQ 81 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCc
Confidence 467899999999964 8899999998743 5789999999999 7888888776677889999999999988889
Q ss_pred hhhhhhheeccceeeeeeccCCCccc----------------cCCcceEEEEEee---e---------eecCHHHHHHHH
Q psy3271 374 YQKICLVRLVGIRQQVDYKSVPSLKI----------------SDHKPVMSLFNSD---I---------RVIDAVRYRKVH 425 (781)
Q Consensus 374 y~~~~~~~l~g~~~~~~y~s~~~~~~----------------SDHkPV~a~f~~~---~---------~~v~~~~~~~~~ 425 (781)
|..+.+.+++|+.+.++.+......+ ++.-.|.+.|.+. + ..-+-++|++.+
T Consensus 82 Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~~~~R~~~~ 161 (310)
T smart00128 82 YNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQDY 161 (310)
T ss_pred eEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccchhhhhHHHH
Confidence 99999999999987775543222112 2222455555442 1 122457889999
Q ss_pred HHHHHHhhhhccccCCceeecCCceeeceeeeeceee
Q psy3271 426 EEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQN 462 (781)
Q Consensus 426 ~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~~~~ 462 (781)
.+|++.++..... ...+.-.++.|||||+|||-...
T Consensus 162 ~~I~~~~~f~~~~-~~~~~~~d~~f~~GDlNyRi~~~ 197 (310)
T smart00128 162 KTILRALSFPERA-ELSQFDHDVVFWFGDLNFRLDSP 197 (310)
T ss_pred HHHHHhcCCCCCc-cccccccceEEEecCcceeecCC
Confidence 9998888643321 11223356779999999998643
No 64
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.34 E-value=8.3e-12 Score=126.25 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=123.9
Q ss_pred CcHHHHHHH--HHHHhccccC--CCceeccCCHHHHHHHHHHHhcCCCC-----C--CC-------CCHHHHHHHHHHHH
Q psy3271 599 VPKEIWFLV--DHLYRHGLKQ--QNLFEHPGLPSEILLIRNWLDTGSSD-----P--LP-------GSVHSVAESLLLLL 660 (781)
Q Consensus 599 IP~~l~~~i--~~L~~~Gl~~--eGIFR~~G~~~~v~~lr~~ld~g~~~-----~--~~-------~dvh~va~lLK~fL 660 (781)
.|..+..-. +++..+.++. .++|++++...-+.+.+++++....- + .+ +---+||.+++.|+
T Consensus 37 ~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf 116 (235)
T cd04405 37 NPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYY 116 (235)
T ss_pred CCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHH
Confidence 344443333 4555555555 68999999999999999999887421 1 11 01127999999999
Q ss_pred hhCCCCCCCCCchHHHHHHHh---------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhh-------cccCCChhh
Q psy3271 661 ESTAEPLIPYNMHPACLTAST---------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHA-------EENRLDAKT 724 (781)
Q Consensus 661 r~LPePLip~~~y~~~~~~~~---------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s-------~~NkM~~~n 724 (781)
++|||||+|..+|+.+...++ ..++++-++-.||++||..|+.|+.||.+++.+. ..|+| +
T Consensus 117 ~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~ 193 (235)
T cd04405 117 GQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---L 193 (235)
T ss_pred hcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---H
Confidence 999999999999997776554 2457777888999999999999999999999984 25666 8
Q ss_pred hhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecCC
Q psy3271 725 IATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAPV 777 (781)
Q Consensus 725 LA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~~ 777 (781)
++..|+|++++++. . ...++.+.|.+|+.+...-|.+|.
T Consensus 194 v~~~Fs~~ii~~~~----l----------~~~~~~~LV~Fmmd~~~~ifkvP~ 232 (235)
T cd04405 194 VKQTFSRAILCSKD----L----------DEGLADLLVLFLMDHHQDIFKVPG 232 (235)
T ss_pred HHHHhhhHhcCccc----c----------CHHHHHHHHHHHHHcchhhhcCCc
Confidence 99999999999982 1 123466788888888888888885
No 65
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.07 E-value=3.5e-09 Score=113.72 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=76.4
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCc------chHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHT------EEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+||.+.+++.+.+..+.++|.||.+.. ..-..|.++...|.+.+.-. .+...+.+|++||||..-+
T Consensus 118 ~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~------~~~~~~pvIl~GDfN~~~~ 191 (283)
T TIGR03395 118 LSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK------NIPKDETVLIGGDLNVNKG 191 (283)
T ss_pred ccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc------cCCCCceEEEEeeCCCCCC
Confidence 46899999999999999999999998753 22467888988887654311 2233467999999998766
Q ss_pred CCCHHHHHHHHhcCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCC-CCcCCcccccceeccCC
Q psy3271 224 DLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSE-KNRAPAWCDRVLYKGDG 302 (781)
Q Consensus 224 ~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~-k~R~PswcDRIL~~~~~ 302 (781)
+..+..+.+.+. ..|+. .-.|.|-||+.++.+-... .+-.|.+-||||++...
T Consensus 192 s~~~~~ml~~l~-------------------------~~~p~-~~g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 192 SNEYHDMFKTLN-------------------------VSEPR-YVGVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred CHHHHHHHHHhc-------------------------ccCCC-cCCCCCCcCCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 322222211111 11111 0124555666655443211 12347799999998654
Q ss_pred ee
Q psy3271 303 IQ 304 (781)
Q Consensus 303 ~~ 304 (781)
.+
T Consensus 246 ~~ 247 (283)
T TIGR03395 246 AQ 247 (283)
T ss_pred CC
Confidence 43
No 66
>PRK05421 hypothetical protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=108.03 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred cCceEEEEEEe-cCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCC
Q psy3271 152 NKGGVAIRLDL-HTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNY 220 (781)
Q Consensus 152 nKG~v~i~~~~-~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNy 220 (781)
-||++.+.+.+ .+..+.++|+||.+.....+.|.++...|.+.+. .....++++||||-
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~~----------~~~~p~Il~GDFN~ 193 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQIA----------HHSGPVILAGDFNT 193 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHHH----------hCCCCEEEEccccc
Confidence 37888999888 5567999999998764445667788877765442 01247999999995
No 67
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=98.88 E-value=8.7e-10 Score=125.08 Aligned_cols=80 Identities=39% Similarity=0.666 Sum_probs=65.8
Q ss_pred ccccccee-ccCCeeEEeeeeccCCCCCCCC--CccccccCCCCCcceecccccc-ccchhhhhcccch-hhHHHHHhhh
Q psy3271 291 AWCDRVLY-KGDGIQVFIGTWNVNGQSPSCD--LSDWLTTTVDPPHIYAIGFQEL-DLSKEAFLFNETL-KEDEWLRAVT 365 (781)
Q Consensus 291 swcDRIL~-~~~~~~~~~gt~nv~g~~~~~~--l~~wl~~~~~~~diy~iG~qE~-~~~~~~~l~~~~~-~~~~w~~~~~ 365 (781)
+=++|.=| ..+.+.||+|||||+|+.|..+ |.+||.. .+|+|||+|||||+ .+++++++.+++. ....|...+.
T Consensus 95 ~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~-~~p~DiyviG~QE~v~lna~nv~~~~~~~~~~~W~~~i~ 173 (621)
T PLN03191 95 SETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLST-EEPADIYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIR 173 (621)
T ss_pred hhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccC-CCCCCEEEEeeEEeccCcHhhhhccccCCchhhHHHHHH
Confidence 34666655 3567899999999999999665 7899854 56789999999999 6999999998876 5778999998
Q ss_pred hcCCCC
Q psy3271 366 KSLHPG 371 (781)
Q Consensus 366 ~~l~~~ 371 (781)
++|+..
T Consensus 174 ~tl~~~ 179 (621)
T PLN03191 174 RTLNKS 179 (621)
T ss_pred HHHhcc
Confidence 887764
No 68
>PRK11756 exonuclease III; Provisional
Probab=98.86 E-value=1.8e-08 Score=107.43 Aligned_cols=65 Identities=14% Similarity=0.294 Sum_probs=40.3
Q ss_pred cCceEEEEEEecCeEEEEEEecCCCCcc-----hHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 152 NKGGVAIRLDLHTTSLCFVNSHLAAHTE-----EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 152 nKG~v~i~~~~~~~~~~fvn~HL~a~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+.+.+++...+..+.++|+|++.+.. ..+.|.+.+..+...+.- .......++++||||--.+
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~-------~~~~~~pvIl~GDfN~~~~ 157 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET-------ELSPDNPLLIMGDMNISPT 157 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH-------HhccCCCEEEEeecccCCC
Confidence 3577888887765669999999976532 233444444444333210 0123357999999997655
No 69
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=98.86 E-value=4.5e-09 Score=114.19 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=121.6
Q ss_pred CCeeEEeeeeccCCCCCCCCCccccccC---CCCCcceecccccc-ccchhhhhcccch-hhHHHHHhhhhcCCC---Cc
Q psy3271 301 DGIQVFIGTWNVNGQSPSCDLSDWLTTT---VDPPHIYAIGFQEL-DLSKEAFLFNETL-KEDEWLRAVTKSLHP---GA 372 (781)
Q Consensus 301 ~~~~~~~gt~nv~g~~~~~~l~~wl~~~---~~~~diy~iG~qE~-~~~~~~~l~~~~~-~~~~w~~~~~~~l~~---~~ 372 (781)
..+.+|++|+|.+|..+..++..||++. ...+|+|++||||+ .++++.++..+.. +-..|+..+.+.|+. ..
T Consensus 28 ~~~~~f~~~~n~~~~~~k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~rl~~wes~~~~~Ln~~~~~e 107 (460)
T COG5411 28 KDVSIFVSTFNPPGKPPKASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDRLRIWESKVLDCLNGAQSDE 107 (460)
T ss_pred cceeeEeccccCCCCCchhhhhhhcccccccccccceEEeccceeeeccchhhccCCcccccchhHHHHHHHhcccccCC
Confidence 4678899999999999999999999992 13479999999999 8999999998854 458999999999994 45
Q ss_pred chhhhhhheeccceeeeeeccCCCccccCC----------------------------cceEEEEEeeeeecCHHHHHHH
Q psy3271 373 AYQKICLVRLVGIRQQVDYKSVPSLKISDH----------------------------KPVMSLFNSDIRVIDAVRYRKV 424 (781)
Q Consensus 373 ~y~~~~~~~l~g~~~~~~y~s~~~~~~SDH----------------------------kPV~a~f~~~~~~v~~~~~~~~ 424 (781)
+|-++++.|+.|++..+++.........+| .+.++.-++.....|-++|...
T Consensus 108 ky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N~eeR~~D 187 (460)
T COG5411 108 KYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNNIEERIFD 187 (460)
T ss_pred ceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhcccccHHHHHHH
Confidence 899999999999998887776432222222 2344445566777899999999
Q ss_pred HHHHHHHhhhhccccCCceeecCCceeeceeeeece
Q psy3271 425 HEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEA 460 (781)
Q Consensus 425 ~~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~~ 460 (781)
|..|++.+..-....+++ +++.+|+||+|||..
T Consensus 188 y~~I~~~i~f~~g~~I~~---hdti~w~GDlNyRVt 220 (460)
T COG5411 188 YRSIASNICFSRGLRIYD---HDTIFWLGDLNYRVT 220 (460)
T ss_pred HHHHHHheecCCCceecc---cceEEEecccCceee
Confidence 999998886543222222 345689999999864
No 70
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.84 E-value=2.3e-09 Score=110.11 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=36.8
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccC
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITD 224 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~ 224 (781)
.+++.+.+++. +..|+++|+|+.+....-+.+...+.+.+..+.-. .....++++||||.+.+.
T Consensus 108 ~~~~~~~~~~~--~~~i~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 108 KSKGIVPVSIN--GKPITVVNVHLPSSNDERQEQWRELLARIQKIYAD--------NPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp EEEEEEEEEEE--TEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHT--------SSCCEEEEEEE-SS-BSS
T ss_pred ccccccccccc--ceEEEeeeccccccchhhhhhhhhhhhhhhhcccc--------cccceEEEEeecccCCcc
Confidence 44556666655 99999999999986554332222322222322211 011179999999999873
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.79 E-value=6.1e-08 Score=87.76 Aligned_cols=100 Identities=23% Similarity=0.423 Sum_probs=79.9
Q ss_pred CCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEEchh
Q psy3271 440 LPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKR 519 (781)
Q Consensus 440 ~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~vd~~ 519 (781)
.|.+++++..++||++...+...+.|+|.|+|..++.|++.. +. .....++++|..|.|.||+++++++++.=.
T Consensus 1 ~P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~-~~---~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~-- 74 (102)
T PF14874_consen 1 VPTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQ-PE---SLSSFFSVEPPSGFLAPGESVELEVTFSPT-- 74 (102)
T ss_pred CCEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEe-CC---cCCCCEEEECCCCEECCCCEEEEEEEEEeC--
Confidence 489999999999999999999999999999999999999864 22 234679999999999999999999887610
Q ss_pred hhhhhccccccccceEEEeeecCCceEEEeecc
Q psy3271 520 CASKMNSGQDKIYDILVLHLEGGKDLFITVTGS 552 (781)
Q Consensus 520 ~a~~ln~g~~~l~diLvL~le~G~d~FI~v~g~ 552 (781)
......++-|.+..++| ...|+++++
T Consensus 75 ------~~~g~~~~~l~i~~e~~-~~~i~v~a~ 100 (102)
T PF14874_consen 75 ------KPLGDYEGSLVITTEGG-SFEIPVKAE 100 (102)
T ss_pred ------CCCceEEEEEEEEECCe-EEEEEEEEE
Confidence 11123456666666654 788888764
No 72
>KOG3565|consensus
Probab=98.73 E-value=2.4e-08 Score=116.51 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=128.5
Q ss_pred CCCCCcHHHHHHHHHHHhccccCCCcee-ccCCHHHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHhhCCCC-CCC
Q psy3271 595 TSYSVPKEIWFLVDHLYRHGLKQQNLFE-HPGLPSEILLIRNWLDTGSSDPL---PGSVHSVAESLLLLLESTAEP-LIP 669 (781)
Q Consensus 595 ~~~~IP~~l~~~i~~L~~~Gl~~eGIFR-~~G~~~~v~~lr~~ld~g~~~~~---~~dvh~va~lLK~fLr~LPeP-Lip 669 (781)
+...||.++..|+.++..+|+..+|||| .+|....+..++..+..|..... ..+..+ |.++|.|++.|.+| .+|
T Consensus 214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 4467999999999999999999999999 78999999999999888843322 225556 99999999999999 999
Q ss_pred CCchHHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCC
Q psy3271 670 YNMHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP 743 (781)
Q Consensus 670 ~~~y~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~ 743 (781)
++.+..++.+... ...++.++..+|..+..++.+|..|+...+..++.|.|++.|+|+||||.++..|......
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~~d~v 372 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEGPDQV 372 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCccccccc
Confidence 9999999887753 2466778999999999999999999999999999999999999999999999887765444
No 73
>KOG4370|consensus
Probab=98.71 E-value=2.2e-08 Score=107.35 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCC---------------------C-----CCCC--
Q psy3271 595 TSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGS---------------------S-----DPLP-- 646 (781)
Q Consensus 595 ~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~---------------------~-----~~~~-- 646 (781)
.+...|.....-+++.+++|.-++|++|.+......+++++.-+.+. + ..+|
T Consensus 67 d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V 146 (514)
T KOG4370|consen 67 DGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSV 146 (514)
T ss_pred CCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHH
Confidence 34557888888999999999999999998766544433333222211 1 0111
Q ss_pred --------------CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh------HHHHHHHhhcCCHHHHHHHHHHHH
Q psy3271 647 --------------GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCS 706 (781)
Q Consensus 647 --------------~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~yL~~ 706 (781)
-.+.+||++||.|||+||+|+++.++-..|..++.. .+.+..++..||.+||.++.||.-
T Consensus 147 ~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~l 226 (514)
T KOG4370|consen 147 ARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNL 226 (514)
T ss_pred HHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHH
Confidence 146789999999999999999999999999887752 457788899999999999999999
Q ss_pred HHHHHHHhhcccCCChhhhhHhhcccc
Q psy3271 707 FLQELLSHAEENRLDAKTIATLFGQIF 733 (781)
Q Consensus 707 fL~~V~~~s~~NkM~~~nLA~vfaP~L 733 (781)
|+-.|....-.|||+..+|+++.+|++
T Consensus 227 H~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 227 HKDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHHHhhcchhheeeecchHH
Confidence 999999999999999999999988864
No 74
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=8e-07 Score=93.60 Aligned_cols=36 Identities=36% Similarity=0.714 Sum_probs=27.4
Q ss_pred EEEEEeecCCCCCC-CCc-hhhhcCCCCCCcEEEEeccccCC
Q psy3271 3 VFIGTWNVNGQSPS-CDL-SDWLTTTVDPPHIYAIGFQELDL 42 (781)
Q Consensus 3 i~v~TwNv~~~~p~-~~l-~~wl~~~~~~~Di~vig~QE~~~ 42 (781)
+.|+||||++.... ..+ .+||.. ..||| ++|||...
T Consensus 1 lri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~ 38 (255)
T TIGR00633 1 MKIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKV 38 (255)
T ss_pred CEEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccC
Confidence 46899999986543 455 788876 45899 99999964
No 75
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.35 E-value=1.1e-05 Score=89.99 Aligned_cols=143 Identities=15% Similarity=0.235 Sum_probs=114.6
Q ss_pred CcHHHHHHHHHHHhccccCCCce---eccCCHHHHHHHHH-HHhcCCCCC-C----------CCCHHHHHHHHHHHHhhC
Q psy3271 599 VPKEIWFLVDHLYRHGLKQQNLF---EHPGLPSEILLIRN-WLDTGSSDP-L----------PGSVHSVAESLLLLLEST 663 (781)
Q Consensus 599 IP~~l~~~i~~L~~~Gl~~eGIF---R~~G~~~~v~~lr~-~ld~g~~~~-~----------~~dvh~va~lLK~fLr~L 663 (781)
|=.+|..|.+.|..+|+++++|| |..-+...++.+.. .++.+.... . ..++|+++.+||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 44577888999999999999996 55666777765554 445544221 1 228999999999999999
Q ss_pred CCCCCCCCchHHHHHHHhh----HHHHHHHhh-cCC-HHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCC
Q psy3271 664 AEPLIPYNMHPACLTASTS----YVQAKQLIA-SLP-LCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDP 737 (781)
Q Consensus 664 PePLip~~~y~~~~~~~~~----~~~~~~ll~-~LP-~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~ 737 (781)
|..+|+++.|..|...-+. .++...++. .|| +.|..++.-++.+|..|+.|+..|+|+...|+..+|+-.|..+
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~ 167 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP 167 (420)
T ss_pred CCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999876542 456667775 564 6678899999999999999999999999999999999999988
Q ss_pred CCCC
Q psy3271 738 PRSR 741 (781)
Q Consensus 738 ~~~~ 741 (781)
....
T Consensus 168 ~~~~ 171 (420)
T PF08101_consen 168 DFGK 171 (420)
T ss_pred Cccc
Confidence 7663
No 76
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.34 E-value=6.9e-06 Score=86.85 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=27.1
Q ss_pred EEEEEeecCCCCCC-CCchhhhcCCCCCCcEEEEeccccCC
Q psy3271 3 VFIGTWNVNGQSPS-CDLSDWLTTTVDPPHIYAIGFQELDL 42 (781)
Q Consensus 3 i~v~TwNv~~~~p~-~~l~~wl~~~~~~~Di~vig~QE~~~ 42 (781)
+.|+||||++.... ..+..||.. ..||| |+|||...
T Consensus 1 mri~t~Ni~g~~~~~~~~~~~l~~--~~~DI--i~LQE~~~ 37 (254)
T TIGR00195 1 MKIISWNVNGLRARLHKGLAWLKE--NQPDV--LCLQETKV 37 (254)
T ss_pred CEEEEEEcCcHHHhHHHHHHHHHh--cCCCE--EEEEeccc
Confidence 36899999986533 456788876 45899 88999854
No 77
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.33 E-value=7.2e-06 Score=86.59 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=29.1
Q ss_pred EEEEEeecCCCCCC--CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 3 VFIGTWNVNGQSPS--CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 3 i~v~TwNv~~~~p~--~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
+.|+||||||-... ..+.+||.. ..||| +||||.-+.
T Consensus 1 mki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~~ 39 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKMQ 39 (250)
T ss_pred CEEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeeccc
Confidence 36899999997644 368899986 46999 999999543
No 78
>PTZ00297 pantothenate kinase; Provisional
Probab=98.04 E-value=0.00012 Score=93.71 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred cccCceEEEEEEec----C-eEEEEEEecCCCCcch--HHHHHhhHHHHHHh-cCcCCCCCCCCCCCCcceeEecccCC
Q psy3271 150 LGNKGGVAIRLDLH----T-TSLCFVNSHLAAHTEE--FERRNQDFHDIDSR-IAFTGFLPPKSIKDHDQIYWLGDLNY 220 (781)
Q Consensus 150 ~gnKG~v~i~~~~~----~-~~~~fvn~HL~a~~~~--~~~Rn~d~~~I~~~-l~f~~~~~~~~i~~~d~~f~~GDlNy 220 (781)
..+||.+-+.+.+. + ..+.|+|.||.+.... -.+|.+...+++.. +. .............++++||||-
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~--~~~~~~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPSTSSQVQETRRFVESVIA--NVYEQNNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcchHHHHHHHHHHHHHHhhh--hhcccccCCCCCCEEEEeeCCC
Confidence 35899999998884 2 5799999999987553 22233333344332 11 0001112223458999999993
No 79
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.01 E-value=8.3e-05 Score=86.86 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=41.4
Q ss_pred EEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHHHHHHHHhcCC
Q psy3271 166 SLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGK 238 (781)
Q Consensus 166 ~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~ 238 (781)
.||++|.||..+...-..|..+...|++.+.--.. ...-.++++||||--.+ ..+-+++..|.
T Consensus 418 ~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~------~~~~PvIlcGDFNS~P~----S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAA------SADIPMLVCGDFNSVPG----SAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhh------cCCCceEEeccCCCCCC----ChhhhhhhcCC
Confidence 59999999977766556666666666665531100 01236999999997655 34556666654
No 80
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.97 E-value=0.00012 Score=78.10 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=34.0
Q ss_pred eEEEEEEecCe---EEEEEEecCCCCcchHHHHHhh-HHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 155 GVAIRLDLHTT---SLCFVNSHLAAHTEEFERRNQD-FHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 155 ~v~i~~~~~~~---~~~fvn~HL~a~~~~~~~Rn~d-~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
...++|+...+ .|.+||+|+.... ..++.+. +.-+..... . ...+-++++||||--.+
T Consensus 129 P~~~~F~~~~~~~~~F~li~~H~~p~~--~~~e~~aL~~v~~~~~~--------~-~~~~~villGDFNa~~~ 190 (276)
T smart00476 129 PFVVKFSSPSTAVKEFVIVPLHTTPEA--AVAEIDALYDVYLDVRQ--------K-WGTEDVIFMGDFNAGCS 190 (276)
T ss_pred ceEEEEEeCCCCCccEEEEEecCChHH--HHHHHHHHHHHHHHHHH--------h-hccCCEEEEccCCCCCC
Confidence 34567776664 7999999998742 2233333 221222211 0 12357999999997654
No 81
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.90 E-value=5.5e-05 Score=79.24 Aligned_cols=36 Identities=36% Similarity=0.704 Sum_probs=28.0
Q ss_pred EEEEeecCCCCCC-CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 4 FIGTWNVNGQSPS-CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 4 ~v~TwNv~~~~p~-~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
.|.||||||-... ..+.+||.. ..||| |||||+...
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pDV--lclQEtK~~ 38 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPDV--LCLQETKAQ 38 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCCE--EEEEecccC
Confidence 5899999987543 458899986 45799 999999543
No 82
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.90 E-value=0.00031 Score=73.57 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=42.9
Q ss_pred cCceEEEEEEec-CeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 152 NKGGVAIRLDLH-TTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 152 nKG~v~i~~~~~-~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..|++-+.+... +..+.++|+||+ ---+.|.++...|+..+.+. +..+++++||||---+
T Consensus 118 ~Rgal~a~~~~~~g~~l~V~~~HL~---l~~~~R~~Q~~~L~~~~~l~---------~~~p~vl~GDFN~~p~ 178 (259)
T COG3568 118 PRGALLAEIELPGGKPLRVINAHLG---LSEESRLRQAAALLALAGLP---------ALNPTVLMGDFNNEPG 178 (259)
T ss_pred CceeEEEEEEcCCCCEEEEEEEecc---ccHHHHHHHHHHHHhhccCc---------ccCceEEEccCCCCCC
Confidence 478989998884 679999999998 22356777777787633322 2238999999994333
No 83
>KOG3873|consensus
Probab=97.72 E-value=0.00018 Score=77.02 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=101.3
Q ss_pred EEEEEEeecCCCCCCC--------CchhhhcCCCCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHhhcCCCCceE
Q psy3271 2 QVFIGTWNVNGQSPSC--------DLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQ 73 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~~--------~l~~wl~~~~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y~ 73 (781)
++.|.|.|+=+-+--+ ++.+.+.. +..|| ++|||+ ...+.|+... +..++...|.
T Consensus 8 ~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~--E~yDi--v~LQEv------------Ws~eD~~~L~-~~~ss~yPys 70 (422)
T KOG3873|consen 8 ELRILTLNIWGIPYVSKDRRHRMDAIGDELAS--EKYDI--VSLQEV------------WSQEDFEYLQ-SGCSSVYPYS 70 (422)
T ss_pred eeeeeEeeccccccccchhHHHHHHHhHHHhh--cccch--hhHHHH------------HHHHHHHHHH-HhccccCchH
Confidence 5788899987765221 23333332 57899 899998 1234454433 3333333454
Q ss_pred EEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccccC
Q psy3271 74 KICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNK 153 (781)
Q Consensus 74 ~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gnK 153 (781)
..-..-..|-.++||.|.++...+-+ .+..=|. ...|. .| ...|-|
T Consensus 71 h~FHSGimGaGL~vfSK~PI~~t~~~---------~y~lNG~---------------p~~i~--------rG--DWf~GK 116 (422)
T KOG3873|consen 71 HYFHSGIMGAGLCVFSKHPILETLFH---------RYSLNGY---------------PHAIH--------RG--DWFGGK 116 (422)
T ss_pred HhhhcccccCceEEeecCchhhhhhh---------ccccCCc---------------cceee--------ec--cccccc
Confidence 43223334889999999998771100 0000000 00111 22 234667
Q ss_pred ceEEEEEEecCeEEEEEEecCCCCcc-----hHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHH
Q psy3271 154 GGVAIRLDLHTTSLCFVNSHLAAHTE-----EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLT 228 (781)
Q Consensus 154 G~v~i~~~~~~~~~~fvn~HL~a~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~ 228 (781)
|---.++.+.+..+.+.|.||-|--+ .+--|-.+-.++-+=++- +-...|.|+.+||||-+..+++..
T Consensus 117 ~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~-------t~q~~~vVI~~GDLN~~P~dl~~~ 189 (422)
T KOG3873|consen 117 GVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRA-------TRQNADVVILAGDLNMQPQDLGHK 189 (422)
T ss_pred eeEEEEEeeCCEEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHH-------HhcCCcEEEEecCCCCCcccccee
Confidence 76677888899999999999977532 244566555555332221 124568999999999999887765
Q ss_pred HHH
Q psy3271 229 KVK 231 (781)
Q Consensus 229 ~v~ 231 (781)
-+.
T Consensus 190 ll~ 192 (422)
T KOG3873|consen 190 LLL 192 (422)
T ss_pred eee
Confidence 433
No 84
>KOG2756|consensus
Probab=97.53 E-value=0.00035 Score=71.94 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=45.1
Q ss_pred EEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 158 IRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 158 i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
+...+.+..+||.|+||.+..+.-.+|.+.|..-+++++-. ..+...-.||+-||+|.|=.
T Consensus 197 ~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~Ea-----Ie~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 197 VEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEA-----IESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHH-----HHhCCCceEEEcCcccchhh
Confidence 44456677799999999999988888999988776665422 11123457999999999854
No 85
>KOG4724|consensus
Probab=97.18 E-value=0.00025 Score=80.89 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=117.4
Q ss_pred ccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCH-----
Q psy3271 553 YERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLP----- 627 (781)
Q Consensus 553 ~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~----- 627 (781)
...++||.||+..+...+ ..|+.+.....-|.+.+..++++||..-..
T Consensus 412 l~kv~fdaPlS~~c~d~g---------------------------k~prPlq~~~tll~kknp~tpn~fprt~~~Alv~k 464 (741)
T KOG4724|consen 412 LAKVPFDAPLSVFCADQG---------------------------KTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLK 464 (741)
T ss_pred hhhCcCCCchhhcccccC---------------------------CCCCChhhhhHHHHhcCCCCCccCCCccchhhhhh
Confidence 345799999999887654 244444445555666789999999873322
Q ss_pred HHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHH--------Hhhc
Q psy3271 628 SEILLIRNWLDTGSSDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQ--------LIAS 692 (781)
Q Consensus 628 ~~v~~lr~~ld~g~~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~--------ll~~ 692 (781)
.......+..+.+..++.+. .+|.+++++|.|+|++|..+...+.+.++.++.. ..++++. ....
T Consensus 465 s~s~~s~dd~s~gr~vdv~sspv~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~ 544 (741)
T KOG4724|consen 465 AFSSSSLDDSSDGRPVDVPSSPVHTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDH 544 (741)
T ss_pred cccccchhhhccCCcccCCCCCchHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccC
Confidence 22233333444466666544 7999999999999999999999999999887763 2445555 6677
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 693 LPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 693 LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
.|..+.++......-...+..++..+.|+..|++.|..|++.....
T Consensus 545 ~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd~ 590 (741)
T KOG4724|consen 545 VPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVDD 590 (741)
T ss_pred CCCCcccccccccccceecccccccccccccccCCCCCccccchhh
Confidence 8888887887777777788899999999999998888888876543
No 86
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=96.86 E-value=0.013 Score=62.04 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=36.7
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+..+++++ .+ +.|.+.|+.|..+ ..|.+..+.|..-.. +. ..+...+++||||=..+
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~--~da~aiV~~I~~~f~--~~------~~~~pw~I~GDFNr~P~ 198 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG--TDAGAIVRAVHNFFR--PN------MRHINWMIAGDFNRSPD 198 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC--ccHHHHHHHHHHHHh--hc------cCCCCEEEeccCCCCCc
Confidence 4567778876 33 6899999998842 124444555543221 01 12367999999996655
No 87
>KOG2338|consensus
Probab=96.85 E-value=0.0033 Score=70.55 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=50.4
Q ss_pred CceEEEEEEecCe---EEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHH
Q psy3271 153 KGGVAIRLDLHTT---SLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLT 228 (781)
Q Consensus 153 KG~v~i~~~~~~~---~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~ 228 (781)
++-|+.+|++.+. -++.+|.||--|......|-.+...|+..+.--... ...|=++|+|||||---++..+.
T Consensus 237 ~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~----~~~~~pi~l~GDfNt~p~~~~y~ 311 (495)
T KOG2338|consen 237 GLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSKS----SKSHWPIFLCGDFNTEPDSPPYL 311 (495)
T ss_pred eEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHhh----cccCCCeEEecCCCCCCCCCcch
Confidence 4456667766665 899999999988877777888877887765311000 01455899999999877755554
No 88
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=96.77 E-value=0.0062 Score=55.44 Aligned_cols=66 Identities=21% Similarity=0.459 Sum_probs=48.3
Q ss_pred eeecCC-ceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 443 VMVDNT-EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 443 v~i~~~-~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
|.+++. .+.|. ..+.......|+|.|++..+..|.+... .+..+.|.|..|.|.||++++|.|++.
T Consensus 2 l~v~P~~~i~F~-~~~~~~~~~~l~l~N~s~~~i~fKiktt------~~~~y~v~P~~G~i~p~~~~~i~I~~~ 68 (109)
T PF00635_consen 2 LSVEPSELIFFN-APFNKQQSCELTLTNPSDKPIAFKIKTT------NPNRYRVKPSYGIIEPGESVEITITFQ 68 (109)
T ss_dssp CEEESSSEEEEE-SSTSS-EEEEEEEEE-SSSEEEEEEEES-------TTTEEEESSEEEE-TTEEEEEEEEE-
T ss_pred eEEeCCcceEEc-CCCCceEEEEEEEECCCCCcEEEEEEcC------CCceEEecCCCEEECCCCEEEEEEEEE
Confidence 566776 45554 3345567899999999999999998653 235689999999999999999988654
No 89
>KOG1449|consensus
Probab=91.06 E-value=0.081 Score=60.21 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCccee
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELI 774 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~ 774 (781)
+.||..|+.++....|.+.|||.+|||+|+|.+.-......+..-...-...+..+.+..|+.+..+.+.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF 70 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLF 70 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccceec
Confidence 3689999999999999999999999999999765332221111111222445555688888888874443
No 90
>KOG1449|consensus
Probab=89.13 E-value=0.042 Score=62.41 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=86.2
Q ss_pred CCCCcH-HHHHHHHHHHhc----c-ccCCCceeccCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHHhhCC
Q psy3271 596 SYSVPK-EIWFLVDHLYRH----G-LKQQNLFEHPGLPSEILLIRNWLDTGSSDP-----LPGSVHSVAESLLLLLESTA 664 (781)
Q Consensus 596 ~~~IP~-~l~~~i~~L~~~----G-l~~eGIFR~~G~~~~v~~lr~~ld~g~~~~-----~~~dvh~va~lLK~fLr~LP 664 (781)
...||. ++.+||.-+..- + ....|.|+.+. |.|...+ .+.|+..+...++.|.+.+|
T Consensus 222 G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~------------D~gae~d~~af~~p~di~v~S~d~dp~s~Q~~ 289 (670)
T KOG1449|consen 222 GRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVE------------DEGAEVDGEAFRWPSDIVVESWDMDPYSRQLP 289 (670)
T ss_pred ccccchhhhccchhccccchhccCCcccCcceeccc------------cccccccccccCCccceeeeccccChhhhhcC
Confidence 356777 777888776652 1 22235555543 3332222 24488889999999999999
Q ss_pred CCCCCCCchHHHHHHHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCC
Q psy3271 665 EPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP 743 (781)
Q Consensus 665 ePLip~~~y~~~~~~~~~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~ 743 (781)
.|+. ...|++=-....+.+...-.+..+++.|+.+-..|..||...+.-. .+++|++.|+++|+|++....
T Consensus 290 pp~~-~~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~~~~~r~pptL~~~ 360 (670)
T KOG1449|consen 290 PPYP-KEAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWSPNLFRPPPTLNGA 360 (670)
T ss_pred CCCc-ccccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecCCCCCCCCCCCCch
Confidence 9943 3333322222222333444567899999999999999999988632 889999999999999865443
No 91
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.75 E-value=3.8 Score=37.55 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=41.8
Q ss_pred eeeceeeeeceeeeEEEEeecceeeEEEEEEEec------C--CCC----CCC---CceEEecceeEeCCCCeEEEEEEE
Q psy3271 450 VVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKF------D--DSN----YCK---DWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 450 v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~------~--~~~----~~~---~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
|.+||+ ......+|+|.|.|.-+.+|.+-..+ + +.. ... .+...+|.+=+|.||++.+|++++
T Consensus 1 i~L~d~--~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti 78 (112)
T PF06280_consen 1 ISLKDT--GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI 78 (112)
T ss_dssp EEEEEE---SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred CCcccc--CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence 346666 34478999999999999999987651 0 000 000 156677788899999999999999
Q ss_pred EEchh
Q psy3271 515 YVDKR 519 (781)
Q Consensus 515 ~vd~~ 519 (781)
.+...
T Consensus 79 ~~p~~ 83 (112)
T PF06280_consen 79 TPPSG 83 (112)
T ss_dssp E--GG
T ss_pred Eehhc
Confidence 88553
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=85.65 E-value=2.5 Score=32.24 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=33.7
Q ss_pred EEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEE
Q psy3271 465 LIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLE 513 (781)
Q Consensus 465 l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~ 513 (781)
+++.|+|..|....=+.. .| .-..++.....|.|||+..|+++
T Consensus 2 F~~~N~g~~~L~I~~v~t-----sC-gCt~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-----SC-GCTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEEEECCCCcEEEEEeeE-----cc-CCEEeeCCcceECCCCEEEEEEE
Confidence 689999999998775542 23 24677888889999999999875
No 93
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=85.23 E-value=1.9 Score=39.14 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=7.2
Q ss_pred ceeEecccCCccc
Q psy3271 211 QIYWLGDLNYRIT 223 (781)
Q Consensus 211 ~~f~~GDlNyRi~ 223 (781)
.++++||||..-.
T Consensus 32 ~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 32 PIIIGGDFNAHHP 44 (119)
T ss_dssp SEEEEEE-----G
T ss_pred CEEEEeECCCCch
Confidence 8999999998544
No 94
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=85.17 E-value=6 Score=36.71 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=49.2
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecC---CCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFD---DSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~---~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
+.+++.-|.|-. .....+++|.|+|.-+..++..-... +....-+.+-|+|..-.|.||++-.|+| +.
T Consensus 2 i~i~~trii~~~----~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~ 72 (122)
T PF00345_consen 2 IQISPTRIIFNE----SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YR 72 (122)
T ss_dssp EEESSSEEEEET----TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EE
T ss_pred EEEccEEEEEeC----CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Ee
Confidence 456666666543 33577999999999988888664321 1222224688999999999999999999 55
No 95
>KOG0439|consensus
Probab=85.01 E-value=2.6 Score=43.48 Aligned_cols=63 Identities=22% Similarity=0.392 Sum_probs=48.2
Q ss_pred ceeecC-Cceee-ceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEE
Q psy3271 442 QVMVDN-TEVVF-DTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKL 512 (781)
Q Consensus 442 ~v~i~~-~~v~f-g~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~ 512 (781)
.+.+.+ ..+.| +.++ +.....++|.|+..-+..|.+.. ..|.+..|.|..|.|.||++++|.+
T Consensus 8 ~l~i~P~~~l~F~~~~~--~~~~~~l~l~N~t~~~vaFKvkt------T~p~~y~VrP~~G~i~p~~t~~i~v 72 (218)
T KOG0439|consen 8 LLEIEPSDELVFPLPLN--EQVKCSLTLKNPTKLRVAFKVKT------TAPKLYCVRPNGGVIDPGSTVEIEV 72 (218)
T ss_pred ccccCCCceEEeccCCC--ceEEEEEEEecCCCCceEEEEEc------CCCCeEEEcCCcceECCCCcEEEEE
Confidence 344445 34555 3333 45688999999988888888755 3467899999999999999999999
No 96
>KOG1453|consensus
Probab=84.98 E-value=0.57 Score=58.49 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=109.6
Q ss_pred CCCcHHHHH-HHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCC--CCC------CCCHHHHHHHHHHHHhhC--CC
Q psy3271 597 YSVPKEIWF-LVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSS--DPL------PGSVHSVAESLLLLLEST--AE 665 (781)
Q Consensus 597 ~~IP~~l~~-~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~--~~~------~~dvh~va~lLK~fLr~L--Pe 665 (781)
...|..+-+ |.......|....++||.++....+...+..+|.... .+. ...+....+.++.++|.+ |.
T Consensus 478 ~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~ 557 (918)
T KOG1453|consen 478 SNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPA 557 (918)
T ss_pred cccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCc
Confidence 346777777 6777777899999999999998899999998887542 111 124556667999999999 99
Q ss_pred CCCCCCchHHHHH----------------HHh------hH-------HHHHHHhh----cCCHHHHHHHHHHHHHHHHHH
Q psy3271 666 PLIPYNMHPACLT----------------AST------SY-------VQAKQLIA----SLPLCSRNVYLYLCSFLQELL 712 (781)
Q Consensus 666 PLip~~~y~~~~~----------------~~~------~~-------~~~~~ll~----~LP~~n~~~L~yL~~fL~~V~ 712 (781)
+....+.|..++. ... .. ..+.++.. .+|..+..++.++..++.++-
T Consensus 558 ~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~e 637 (918)
T KOG1453|consen 558 PCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVE 637 (918)
T ss_pred ccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhcc
Confidence 9888888777772 111 01 34555666 899999999999999999999
Q ss_pred Hhhccc-CCCh-hhhhHhhcc----ccccCCC
Q psy3271 713 SHAEEN-RLDA-KTIATLFGQ----IFLRDPP 738 (781)
Q Consensus 713 ~~s~~N-kM~~-~nLA~vfaP----~Llr~~~ 738 (781)
.....| -|+. +||..+|++ +++..++
T Consensus 638 GiYRksG~~~~~e~l~~~~e~~~~~v~l~~~d 669 (918)
T KOG1453|consen 638 GIYRKSGSMNQVENLSAVFENGDALVLLSTPD 669 (918)
T ss_pred ceeeccccHHHHHHHHHHhcCCccceecCCCC
Confidence 988888 6877 999999998 6666654
No 97
>KOG4271|consensus
Probab=82.52 E-value=1.3 Score=53.39 Aligned_cols=145 Identities=17% Similarity=0.042 Sum_probs=98.8
Q ss_pred CCcHHHHHHHHHHHhccccCCC---ceeccC-CHHHHHHHHHHHh-cCCCCC-CCC--CHH--HHHHHHH--HHHhhCCC
Q psy3271 598 SVPKEIWFLVDHLYRHGLKQQN---LFEHPG-LPSEILLIRNWLD-TGSSDP-LPG--SVH--SVAESLL--LLLESTAE 665 (781)
Q Consensus 598 ~IP~~l~~~i~~L~~~Gl~~eG---IFR~~G-~~~~v~~lr~~ld-~g~~~~-~~~--dvh--~va~lLK--~fLr~LPe 665 (781)
.-|.+..+-+.+|.++|+..|| |-|.+. +...++.=...++ .|.... ... +|| -|.+.++ .-||..+.
T Consensus 370 ~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~~ 449 (1100)
T KOG4271|consen 370 GSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQGQ 449 (1100)
T ss_pred CCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhccc
Confidence 3588999999999999999999 888888 5555554444454 343222 222 677 4677777 67788888
Q ss_pred CCCCCCchHHHHHH--Hh------hHHH-HHHHhhc--CCHHHHH----HHHHHHHHHHHHHHhhcccCCChh-hhhHhh
Q psy3271 666 PLIPYNMHPACLTA--ST------SYVQ-AKQLIAS--LPLCSRN----VYLYLCSFLQELLSHAEENRLDAK-TIATLF 729 (781)
Q Consensus 666 PLip~~~y~~~~~~--~~------~~~~-~~~ll~~--LP~~n~~----~L~yL~~fL~~V~~~s~~NkM~~~-nLA~vf 729 (781)
.+.|......+..+ +. ++++ .+.+++. -|.+++. ++..+...+.-+..++..|.|++. ..|.|.
T Consensus 450 ~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCk 529 (1100)
T KOG4271|consen 450 QIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACK 529 (1100)
T ss_pred ccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhc
Confidence 77777655544444 11 2222 2344555 7888777 666666666777779999999999 999999
Q ss_pred cc-ccccCCCCCCC
Q psy3271 730 GQ-IFLRDPPRSRD 742 (781)
Q Consensus 730 aP-~Llr~~~~~~~ 742 (781)
+| .|++.|-...+
T Consensus 530 S~~llL~~pI~~~k 543 (1100)
T KOG4271|consen 530 SPHLLLRLPIGAGK 543 (1100)
T ss_pred ChHHHHhccccccc
Confidence 99 57776654443
No 98
>KOG0565|consensus
Probab=81.28 E-value=0.88 Score=43.82 Aligned_cols=32 Identities=63% Similarity=0.877 Sum_probs=27.9
Q ss_pred ccccccccccccccccccceeEEEeeeccccc
Q psy3271 100 VASDTVGTGIMGKLGNKGGVAIRLDLHTTSLS 131 (781)
Q Consensus 100 ~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~ 131 (781)
++.+++++|+++.+||||+|+|++.++.++..
T Consensus 31 ~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~ 62 (145)
T KOG0565|consen 31 VRVSEVGTGIMGYLGNKGGVAISFVLSQTSFC 62 (145)
T ss_pred cEEEEecceEEEEeCCCCeEEEEEEEcCceEE
Confidence 45678899999999999999999999988643
No 99
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=76.27 E-value=18 Score=39.96 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=59.6
Q ss_pred eeeceeeeece---eeeEEEEeecceeeEE--------EEEEEecC--------CCCCCCCceEEecceeEeCCCCeEEE
Q psy3271 450 VVFDTLRFLEA---QNKTLIIANTGQVPVQ--------FEFIKKFD--------DSNYCKDWLHIEPYMGFILPGEKCDV 510 (781)
Q Consensus 450 v~fg~v~~~~~---~~~~l~i~N~g~~~~~--------~~f~~~~~--------~~~~~~~WL~v~P~~g~i~pge~~~i 510 (781)
+..-+-+|+.+ -+-.++|+|+|.-|+. .+|+.+.- ++..+..=|+|+|. +-|.|||+.++
T Consensus 251 ~~v~~A~Y~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGETrtl 329 (381)
T PF04744_consen 251 VKVTDATYRVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGETRTL 329 (381)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-EEEE
T ss_pred EEEeccEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCceEEE
Confidence 45556677766 3456899999997765 46665421 11223345778775 46899999999
Q ss_pred EEEEEEchh-hhhh----hccccccccceEEEeeecCCceEEEeecccccc
Q psy3271 511 KLEVYVDKR-CASK----MNSGQDKIYDILVLHLEGGKDLFITVTGSYERS 556 (781)
Q Consensus 511 ~~~~~vd~~-~a~~----ln~g~~~l~diLvL~le~G~d~FI~v~g~~~~s 556 (781)
++++. |.. .... +++.+..+--.|-..-+.|..+.+.|.|...|+
T Consensus 330 ~V~a~-dA~WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvIP~ 379 (381)
T PF04744_consen 330 TVEAQ-DAAWEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVIPK 379 (381)
T ss_dssp EEEEE--HHHHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-EEE
T ss_pred EEEee-hhHHHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCccccc
Confidence 99875 321 1111 233344455566677788999999998876665
No 100
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=75.53 E-value=14 Score=31.31 Aligned_cols=56 Identities=30% Similarity=0.447 Sum_probs=30.3
Q ss_pred ceeeeEEEEeecceee---EEEEEEEecCCCCCCCCce-EEecce-eEeCCCCeEEEEEEEEEchhhh
Q psy3271 459 EAQNKTLIIANTGQVP---VQFEFIKKFDDSNYCKDWL-HIEPYM-GFILPGEKCDVKLEVYVDKRCA 521 (781)
Q Consensus 459 ~~~~~~l~i~N~g~~~---~~~~f~~~~~~~~~~~~WL-~v~P~~-g~i~pge~~~i~~~~~vd~~~a 521 (781)
+...-++++.|.|..+ +.+++-. | .-|- ...|.. ..|.||++.+++++|.+...+.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~-P------~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSL-P------EGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeC-C------CCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 3456789999999765 3444322 2 2477 345543 4899999999999999855533
No 101
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=73.71 E-value=19 Score=36.57 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=47.8
Q ss_pred eeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE-Echhhhhhh
Q psy3271 457 FLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY-VDKRCASKM 524 (781)
Q Consensus 457 ~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~-vd~~~a~~l 524 (781)
+.......+.|.|+..-+.-|...- ..|.-.-|.|..|.|.|++.++|.+.+. ++.+.|...
T Consensus 15 lt~~ske~~sv~NnspepvgfKVKT------TaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdf 77 (242)
T COG5066 15 LTNKSKEMFSVQNNSPEPVGFKVKT------TAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDF 77 (242)
T ss_pred cccccceeeEeecCCCCceeEEeec------cCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCc
Confidence 3445667799999999999998643 3456677999999999999999988875 455666544
No 102
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=73.53 E-value=8.8 Score=43.96 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=44.2
Q ss_pred ceeeeEEE-EeecceeeEEEEEEEecCC------CCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 459 EAQNKTLI-IANTGQVPVQFEFIKKFDD------SNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 459 ~~~~~~l~-i~N~g~~~~~~~f~~~~~~------~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
+...++|+ |.|+|.+...|+....+.. ........-.+...|+|.|||+..+.|...
T Consensus 247 e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~ 310 (426)
T PF14646_consen 247 ERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK 310 (426)
T ss_pred ceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence 45677777 9999999999998875432 133456777888999999999998888743
No 103
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=59.35 E-value=29 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=37.0
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEE-EEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEEc
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQ-FEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVD 517 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~-~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~vd 517 (781)
|++.| .....-..+...+..+-+++|+|.|...+. |...--.++... -+..-+.|.||++..+.+.+...
T Consensus 2 pDL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~------~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 2 PDLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV------STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp --EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE------EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee------ccEEECCcCCCcEEEEEEEEEeC
Confidence 56666 222333444555777888999999987633 332222222211 11222788999999999988774
No 104
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=17 Score=39.48 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=36.2
Q ss_pred ccCceEEEEEEe-cCeEEEEEEecCCCC-cchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCC
Q psy3271 151 GNKGGVAIRLDL-HTTSLCFVNSHLAAH-TEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNY 220 (781)
Q Consensus 151 gnKG~v~i~~~~-~~~~~~fvn~HL~a~-~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNy 220 (781)
+-||+.++.... +++.+..++.|..-. -.....| ++...+...+. . ....+++.||||-
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i~-~---------~~gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQIA-G---------HSGPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHHHH-c---------CCCCeEEeecCCC
Confidence 568877766554 468899999998732 2222333 44444433332 0 1147999999996
No 105
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=52.89 E-value=40 Score=35.23 Aligned_cols=68 Identities=13% Similarity=0.313 Sum_probs=45.2
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-++.+++.-|.|.+ .....+++|.|+|..|...+- +...+++. ..=+-|+|.--.|.||++..|++..
T Consensus 24 a~v~l~~tRvi~~~----~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~--~~~fivtPPl~rl~pg~~q~vRii~ 92 (230)
T PRK09918 24 AGMVPETSVVIVEE----SDGEGSINVKNTDSNPILLYTTLVDLPEDK--SKLLLVTPPVARVEPGQSQQVRFIL 92 (230)
T ss_pred eeEEEccEEEEEEC----CCCeEEEEEEcCCCCcEEEEEEEecCCCCC--CCCEEEcCCeEEECCCCceEEEEEE
Confidence 35666666666543 446789999999976654432 22222221 1237899999999999999888763
No 106
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=44.23 E-value=49 Score=29.72 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=42.7
Q ss_pred ceeeeece-eeeEEEEeecce----eeEEEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchh
Q psy3271 453 DTLRFLEA-QNKTLIIANTGQ----VPVQFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKR 519 (781)
Q Consensus 453 g~v~~~~~-~~~~l~i~N~g~----~~~~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~ 519 (781)
|++..++. .+++++++|||. |-.+|.|..-. |...... .+..-++| ..+||+..+|++.-+--..
T Consensus 11 g~IelN~gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G--~RLdIpagTAVRFEPG~~k~V~LV~~~G~r 88 (106)
T COG0832 11 GDIELNAGRPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYG--MRLDIPAGTAVRFEPGDEKEVELVPLGGKR 88 (106)
T ss_pred ccEEEeCCCcceEEEEeecCCCceEeecceeehhhCcceeechhhhcc--eEecccCCceEeeCCCCccEEEEEEccCce
Confidence 44444333 678899999995 44567776532 1111111 23333333 6789999999998766555
Q ss_pred hhhhhc
Q psy3271 520 CASKMN 525 (781)
Q Consensus 520 ~a~~ln 525 (781)
.+..+|
T Consensus 89 ~v~Gf~ 94 (106)
T COG0832 89 EVYGFN 94 (106)
T ss_pred EEeccc
Confidence 555554
No 107
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=43.97 E-value=33 Score=32.08 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=40.9
Q ss_pred eEEecceeEeCCCCeEEEEEEEEEchhhhhhhccccccccceEEEeeecCC-ceEEEeeccccccc
Q psy3271 493 LHIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGK-DLFITVTGSYERSV 557 (781)
Q Consensus 493 L~v~P~~g~i~pge~~~i~~~~~vd~~~a~~ln~g~~~l~diLvL~le~G~-d~FI~v~g~~~~s~ 557 (781)
|++.+.+....|||++.+.+........+.-+-....++-+.-.+.+.++. .+-++++.++.|.+
T Consensus 1 l~i~~~~~~~~~Ge~~~v~v~~~~~~~~~~~~v~s~g~I~~~~~~~~~~~~~~~~~~v~~~~~P~~ 66 (136)
T PF07703_consen 1 LQISTDKDSYKPGETAKVTVQSPFPNGTFLYLVESRGKIVSTGSVELKNGSTTFEFPVTPDMAPNF 66 (136)
T ss_dssp EEEEE-SSSB-TTSEEEEEEEEESCESEEEEEEEETTEEEEEEEEECTTTSSEEEEEE-GGGTSEE
T ss_pred CEEEcCCCCcCCCCEEEEEEEcCCCccEEEEEEEECCeEEEEEEEEecCCcEEEEEecchhcCCcE
Confidence 578889999999999999999876533222222223333333345567765 68888888888853
No 108
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=43.51 E-value=6.2 Score=41.76 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=28.2
Q ss_pred EeeeeccCCCCCCC--CCccccccCCCCCcceeccccccccchhhh
Q psy3271 306 FIGTWNVNGQSPSC--DLSDWLTTTVDPPHIYAIGFQELDLSKEAF 349 (781)
Q Consensus 306 ~~gt~nv~g~~~~~--~l~~wl~~~~~~~diy~iG~qE~~~~~~~~ 349 (781)
-+.||||||..... .+.+||... +.-++.+||+.+..+.+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~----~~DIiclQEtK~~~~~~ 43 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV----DADVFCIQESKMQQEQN 43 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc----CCCEEEEEeeccccccc
Confidence 36799999987643 477787542 34468999998776543
No 109
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=41.08 E-value=1.3e+02 Score=33.46 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=61.0
Q ss_pred eeeceeeeece---eeeEEEEeecceee--------EEEEEEEecC---CCCCCCC-----ceEEecceeEeCCCCeEEE
Q psy3271 450 VVFDTLRFLEA---QNKTLIIANTGQVP--------VQFEFIKKFD---DSNYCKD-----WLHIEPYMGFILPGEKCDV 510 (781)
Q Consensus 450 v~fg~v~~~~~---~~~~l~i~N~g~~~--------~~~~f~~~~~---~~~~~~~-----WL~v~P~~g~i~pge~~~i 510 (781)
+..-+-+|+.+ -+-+++|+|.|..+ |..+|..+.+ .+...|+ =|+|++.+ -|.|||+.+|
T Consensus 270 ~kv~~a~Y~VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~-pI~PGETr~v 348 (399)
T TIGR03079 270 INVTKANYDVPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQS-AIAPGETVEV 348 (399)
T ss_pred EEEeccEEecCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCC-CcCCCcceEE
Confidence 45555677776 34568999999865 4567776522 2233333 56666544 5899999999
Q ss_pred EEEEEEchhhhhh---h----ccccccccceEEEeeecCCceEEEeeccccc
Q psy3271 511 KLEVYVDKRCASK---M----NSGQDKIYDILVLHLEGGKDLFITVTGSYER 555 (781)
Q Consensus 511 ~~~~~vd~~~a~~---l----n~g~~~l~diLvL~le~G~d~FI~v~g~~~~ 555 (781)
++++.- +++. | .+-+.++--.|..--..|+.+...|.|-..|
T Consensus 349 ~v~aqd---A~WEveRL~~L~~DpdSrfgGLLff~d~~G~R~~~~I~gpvIP 397 (399)
T TIGR03079 349 KMEAKD---ALWEVQRLMALLGDPESRFGGLLMFWDPEGNRIINSIAGPVIP 397 (399)
T ss_pred EEEEeh---hhhHHHHHHHHhcCcccccceEEEEEcCCCCEEehhccCcccc
Confidence 998752 2221 1 2223333344445555677777777664444
No 110
>KOG4370|consensus
Probab=35.99 E-value=45 Score=37.43 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHH
Q psy3271 648 SVHSVAESLLLLLESTAEPLIPYNMHPACLTA 679 (781)
Q Consensus 648 dvh~va~lLK~fLr~LPePLip~~~y~~~~~~ 679 (781)
|+|..+...|.|++.+|||++|-++-.-+.+|
T Consensus 119 D~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~C 150 (514)
T KOG4370|consen 119 DAHDAAGLIKRFLRQIPEPVVPIEFPSVARSC 150 (514)
T ss_pred HHHHHHhHHHHhhhccCCccccccchHHHHHH
Confidence 89999999999999999999997764333333
No 111
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=35.20 E-value=78 Score=31.31 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=31.8
Q ss_pred ceeeeEEEEeecceee-E------EEEEEEec---CC-----CCCCCCceEEecceeE--eCCCCeEEEEEEEE
Q psy3271 459 EAQNKTLIIANTGQVP-V------QFEFIKKF---DD-----SNYCKDWLHIEPYMGF--ILPGEKCDVKLEVY 515 (781)
Q Consensus 459 ~~~~~~l~i~N~g~~~-~------~~~f~~~~---~~-----~~~~~~WL~v~P~~g~--i~pge~~~i~~~~~ 515 (781)
....-.|+++|+|..+ . .|+.+++- +. ..+-..+-+++|..++ |.|||+++|.+..-
T Consensus 30 ~c~~~~ltl~n~~~~~~~~~dW~IYf~~ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~ 103 (164)
T PF03173_consen 30 SCFRAELTLTNPGDAPLPKSDWAIYFSSIRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGE 103 (164)
T ss_dssp -EEEEEEEEEE-SS-B------EEEEE-SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEE
T ss_pred cceEEEEEEEcCCCccCCCCCeEEEEecceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEcc
Confidence 3345678888887643 2 23333221 11 2345678899999885 89999999999853
No 112
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=33.14 E-value=1.8e+02 Score=30.32 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=45.4
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-+|.++..-|.|.+ .....+|+|.|+|.-|.-.+- +...+++. .+.-+-|+|.--.|.||++..|+|.-
T Consensus 22 A~v~l~~TRvIy~~----~~~~~si~i~N~~~~p~LvQswv~~~~~~~-~~~pFivtPPlfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 22 AAFVLNGTRFIYDE----GRKNISFEVTNQADQTYGGQVWIDNTTQGS-STVYMVPAPPFFKVRPKEKQIIRIMK 91 (229)
T ss_pred EEEEECceEEEEcC----CCceEEEEEEeCCCCcEEEEEEEecCCCCC-ccCCEEEcCCeEEECCCCceEEEEEE
Confidence 35666666666653 346888999999876644432 22222111 11237899999999999999888863
No 113
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.01 E-value=92 Score=28.23 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=39.3
Q ss_pred ceeeeece--eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEe-cceeEeCCCCeEEEEEEEEEchhh
Q psy3271 453 DTLRFLEA--QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIE-PYMGFILPGEKCDVKLEVYVDKRC 520 (781)
Q Consensus 453 g~v~~~~~--~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~-P~~g~i~pge~~~i~~~~~vd~~~ 520 (781)
|++.+... ...+|+++|||.-|. +|.|..-. |.......=|.|- -++=..+||++.+|++.-+--...
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~ 90 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRRE 90 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeE
Confidence 44555544 467899999996555 45555422 1111111112221 122367999999999876543343
Q ss_pred hhhh
Q psy3271 521 ASKM 524 (781)
Q Consensus 521 a~~l 524 (781)
+..+
T Consensus 91 v~G~ 94 (104)
T PRK13202 91 VPGL 94 (104)
T ss_pred EEcC
Confidence 4333
No 114
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=31.22 E-value=2.1e+02 Score=29.87 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-++.+++.-|.|.. ..+..+|+|.|+|..|.-.+- +...+++.....-+-|+|.--.|+||++..|+|.-
T Consensus 19 A~i~l~~TRvI~~~----~~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~ 89 (226)
T PRK15295 19 ASIVVGGTRLVFDG----NNDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR 89 (226)
T ss_pred ccEEeCceEEEEeC----CCceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence 35666666666643 346889999999987655442 22222221112347899999999999999988763
No 115
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=28.68 E-value=2.3e+02 Score=29.45 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=44.6
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecce-ee-EEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQ-VP-VQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLE 513 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~-~~-~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~ 513 (781)
-++.+++.-|.|-. ..+..+++|.|++. .+ .....+...+++.. . -+-|+|.--.|.||++..|+|.
T Consensus 21 agv~l~~TRvI~~~----~~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~-~-pfivtPPl~rl~p~~~q~lRIi 89 (228)
T PRK15208 21 GGVALSSTRVIYDG----SKKEASLTVNNKSKTEEFLIQSWIDDANGNKK-T-PFIITPPLFKLDPTKNNVLRIV 89 (228)
T ss_pred ccEEeCceEEEEeC----CCceEEEEEEeCCCCCcEEEEEEEECCCCCcc-C-CEEECCCeEEECCCCccEEEEE
Confidence 45666666666643 34678999999984 33 33344443332222 2 3789999999999999888876
No 116
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=28.36 E-value=1.9e+02 Score=28.31 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=17.7
Q ss_pred eEeCCCCeEEEEEEEEEchhhhhh
Q psy3271 500 GFILPGEKCDVKLEVYVDKRCASK 523 (781)
Q Consensus 500 g~i~pge~~~i~~~~~vd~~~a~~ 523 (781)
=.|.|||++++-+..+||++....
T Consensus 111 Q~L~pgE~~~mPv~F~IDp~i~~d 134 (152)
T PF04442_consen 111 QTLAPGETVDMPVVFYIDPDIPED 134 (152)
T ss_dssp -EE-TT-EEEEEEEEEE-GGGGSS
T ss_pred cCcCCCCeEEEEEEEEECCcccCC
Confidence 489999999999999999986643
No 117
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=28.24 E-value=2.2e+02 Score=30.06 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=48.0
Q ss_pred CCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCC----CceEEecceeEeCCCCeEEEEEEE
Q psy3271 440 LPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCK----DWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 440 ~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~----~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
.-++.+++.-|.|.. ..+..+|+|.|+|..|...+---..+++...| .-+-|+|.--.|.||++-.|+|.-
T Consensus 24 ~A~i~l~~TRvI~~~----~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~ 98 (246)
T PRK09926 24 IADIVISGTRIIYKS----DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY 98 (246)
T ss_pred eeeEEeCceEEEEeC----CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe
Confidence 346777777666643 34688999999998776665332212211111 237899999999999999888774
No 118
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=27.24 E-value=1.5e+02 Score=25.83 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=33.8
Q ss_pred eeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 462 NKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 462 ~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
.-.|+|.|.|..++.|......-. .-.|..-.|.||+++++.+.+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~--------~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYG--------GGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcC--------CCCCEEEEECCCCEEEEEEee
Confidence 667999999999999997662211 123466789999998887765
No 119
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.31 E-value=1.3e+02 Score=27.19 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=36.8
Q ss_pred eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhhc
Q psy3271 461 QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKMN 525 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~ln 525 (781)
...+|+++|||.-|. +|.|..-. |...... .+..-++| ..+||++.+|++.-+--...+..+|
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G--~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~~ 94 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYG--MRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYGFN 94 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHccc--ceecccCCCeEEECCCCeEEEEEEEccCceEEEccC
Confidence 578899999996554 56665422 1111111 23332333 6799999999988654334444433
No 120
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.13 E-value=1.4e+02 Score=27.03 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=36.5
Q ss_pred eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhhc
Q psy3271 461 QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKMN 525 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~ln 525 (781)
...+|+++|||.-|. +|.|..-. |...... .+..-++| ..+||++.+|++.-+--...+..+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G--~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~~ 94 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFG--MRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYGFN 94 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcC--cccccCCCCeEeECCCCeEEEEEEEccCceEEEccC
Confidence 578899999996555 45555422 1111111 12232233 6799999999988654334444433
No 121
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=26.12 E-value=2e+02 Score=25.74 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=36.1
Q ss_pred ceeeeeceeeeEEEEeecceee--------EEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 453 DTLRFLEAQNKTLIIANTGQVP--------VQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 453 g~v~~~~~~~~~l~i~N~g~~~--------~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
|++...++-.-.++++|....+ +.+..-..+ ....=++.....+.|.||++.++++.+.
T Consensus 9 ~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG----~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 9 GDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTG----LTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp SEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTT----TEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECC----cccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 4555567788899999998877 333322211 1111235566789999999999988864
No 122
>PRK13201 ureB urease subunit beta; Reviewed
Probab=25.83 E-value=2e+02 Score=27.28 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=48.1
Q ss_pred eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhhccc-
Q psy3271 461 QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKMNSG- 527 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~ln~g- 527 (781)
...+|++.|||.-|. +|.|..-. |...... .+..-++| ..+||++.+|++.-+-=...+..+|.-
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G--~RLdIPAGTAVRFEPG~~k~V~LV~igG~r~V~Gfnglv 97 (136)
T PRK13201 20 PETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYG--KHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFGFRGMV 97 (136)
T ss_pred CEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcC--cccccCCCCeEeECCCCeEEEEEEEccCceEEEccCccc
Confidence 578899999996555 45665422 1111111 12332333 679999999999876655666666532
Q ss_pred cccccceEEEeeecCCceE
Q psy3271 528 QDKIYDILVLHLEGGKDLF 546 (781)
Q Consensus 528 ~~~l~diLvL~le~G~d~F 546 (781)
...+++-.+-+.++.-+-+
T Consensus 98 ~G~ld~~~~~~~~~~~~~~ 116 (136)
T PRK13201 98 NGPIDESRVYRPTDENDAY 116 (136)
T ss_pred cCccCHhheecccCCCccc
Confidence 2345444444455444433
No 123
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=25.57 E-value=3.1e+02 Score=25.02 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=35.4
Q ss_pred eeEEEEeecceeeEEEEEEEecCCCCCCCCceEE-ec-ceeEeCCCCeEEEEEEEEEchhhhh
Q psy3271 462 NKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHI-EP-YMGFILPGEKCDVKLEVYVDKRCAS 522 (781)
Q Consensus 462 ~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v-~P-~~g~i~pge~~~i~~~~~vd~~~a~ 522 (781)
.=+++|.|.+.-+-.|++.-.... =+++ .| ..=.|.||++.++.+.|.+.++.+.
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~------~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~ 90 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP------GAELQGPENTITVPPGETREVPVFVTAPPDALK 90 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S------S-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-S
T ss_pred EEEEEEEECCCCCEEEEEEEecCC------CeEEECCCcceEECCCCEEEEEEEEEECHHHcc
Confidence 446899999999999998765422 1344 34 4557899999999999999887643
No 124
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=25.05 E-value=2.5e+02 Score=29.90 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=51.7
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeeccee-eEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE---
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQV-PVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY--- 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~-~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~--- 515 (781)
-+|.++..-|.|.+ .....+|+|.|++.- |.-.+- +...+..... .-+-|+|.--.|.||+...|+|.-.
T Consensus 26 Agi~l~~TRvIy~e----~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~-~pFivtPPLfRlep~~~q~lRI~~~~~~ 100 (257)
T PRK15274 26 SAIVPDRTRVIFNG----NENSITVTLKNGNATLPYLAQAWLEDDKFAKDT-RYFTALPPLQRIEPKSDGQVKVQPLPAA 100 (257)
T ss_pred eeEEeCceEEEEeC----CCceEEEEEEeCCCCCcEEEEEEccCCCCCccc-CCEEEcCCeEEECCCCceEEEEEECCCC
Confidence 46666666666643 346789999999843 433332 2322212111 2378999999999999999988743
Q ss_pred ----Echhhhhhhcc
Q psy3271 516 ----VDKRCASKMNS 526 (781)
Q Consensus 516 ----vd~~~a~~ln~ 526 (781)
-|.|++.+||.
T Consensus 101 ~~LP~DRESlFwlNv 115 (257)
T PRK15274 101 ASLPQDRESLFYFNV 115 (257)
T ss_pred CCCCCceeEEEEEEE
Confidence 35577777764
No 125
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=24.92 E-value=3.1e+02 Score=28.89 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=53.0
Q ss_pred cCCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE--
Q psy3271 439 FLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY-- 515 (781)
Q Consensus 439 ~~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~-- 515 (781)
+.-+|.++..-|.|.+ ..+..+|+|.|++..|.-.+- +...++... .-+-|+|.--.|.||+.-.++|.-.
T Consensus 26 a~agv~l~~TRvIy~~----~~k~~sl~v~N~~~~pyLvQsWvd~~~~~~~--~pFivtPPlfRlep~~~~~lRI~~~~~ 99 (237)
T PRK15224 26 KSFSVKLGATRVIYHA----GTAGATLSVSNPQNYPILVQSSVKAADKSSP--APFLVMPPLFRLEANQQSQLRIVRTGG 99 (237)
T ss_pred eeEEEEeCceEEEEeC----CCcEEEEEEEcCCCCcEEEEEEEeCCCCCcc--CCEEECCCeEEECCCCceEEEEEECCC
Confidence 3456777777666653 346789999999987643332 332322222 2388999999999999988888743
Q ss_pred ---Echhhhhhhc
Q psy3271 516 ---VDKRCASKMN 525 (781)
Q Consensus 516 ---vd~~~a~~ln 525 (781)
-|.|++.+||
T Consensus 100 ~LP~DRESlFwln 112 (237)
T PRK15224 100 DMPTDRETLQWVC 112 (237)
T ss_pred CCCCceeEEEEEE
Confidence 1445555555
No 126
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=24.53 E-value=39 Score=37.30 Aligned_cols=52 Identities=29% Similarity=0.296 Sum_probs=31.4
Q ss_pred EEEEEEeecCCCC-------CC-CCchhhhcC--------CCCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHh
Q psy3271 2 QVFIGTWNVNGQS-------PS-CDLSDWLTT--------TVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTK 64 (781)
Q Consensus 2 ~i~v~TwNv~~~~-------p~-~~l~~wl~~--------~~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~ 64 (781)
++.|+||||=.+. |. +.-.+|=-. ..-.+|| +||||++. .....-|.+.+..
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di--~CLQEvd~---------~~~~~fw~~~l~~ 97 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADI--LCLQEVDA---------EDFEDFWKDQLGK 97 (378)
T ss_pred eeEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCce--eeeehhhh---------hHHHHHHHHHhcc
Confidence 4789999998664 11 122223111 1246899 99999963 2245678777764
No 127
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=23.87 E-value=3e+02 Score=29.21 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=45.5
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCC----CCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSN----YCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~----~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
-++.+++.-|.|.+ ..+..+|+|.|+|..|...+- +...++.. ....-+-|+|.--.|.||++-.|+|.-.
T Consensus 28 A~l~l~~TRviy~~----~~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 28 ASVTILGSRIIYPS----TASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred eEEEeCceEEEEeC----CCcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 45666666666642 346789999999976654442 22221110 0012378999999999999999887743
No 128
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=23.61 E-value=1.4e+02 Score=26.57 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=30.0
Q ss_pred CceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEE
Q psy3271 448 TEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLE 513 (781)
Q Consensus 448 ~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~ 513 (781)
..+.-..+.-...+.-+|++.|.|..+-.|.+-. -|. ...|.||++.+++|.
T Consensus 30 ~~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~-----~~~l~~g~~~~~~f~ 81 (104)
T PF13473_consen 30 FGFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGI-----SKVLPPGETATVTFT 81 (104)
T ss_dssp EEEES-EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTE-----EEEE-TT-EEEEEEE
T ss_pred CeEecCEEEEcCCCeEEEEEEECCCCcEEEEECC---------Cce-----EEEECCCCEEEEEEc
Confidence 3334445555555566799999998886665422 122 268999999888875
No 129
>PRK13203 ureB urease subunit beta; Reviewed
Probab=23.52 E-value=1.7e+02 Score=26.57 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=36.7
Q ss_pred eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhhc
Q psy3271 461 QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKMN 525 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~ln 525 (781)
...+|++.|||.-|. +|.|..-. |...... .+..-++| ..+||++.+|++.-+--...+..+|
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G--~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~n 94 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARG--MRLNIPAGTAVRFEPGQTREVELVPLAGARRVYGFR 94 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcC--cccccCCCCeEeECCCCeEEEEEEEccCceEEEccC
Confidence 578899999996555 45665422 1111111 12332333 6799999999987654334444443
No 130
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.48 E-value=1.2e+02 Score=30.39 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.6
Q ss_pred eeEeCCCCeEEEEEEEEEchhhhh
Q psy3271 499 MGFILPGEKCDVKLEVYVDKRCAS 522 (781)
Q Consensus 499 ~g~i~pge~~~i~~~~~vd~~~a~ 522 (781)
.-+|.|||++++-+..+||++.+.
T Consensus 136 eq~L~pgE~vemPV~FfVDpd~~~ 159 (195)
T COG3175 136 EQTLKPGETVEMPVVFFVDPDFAD 159 (195)
T ss_pred ecccCCCCeEeccEEEEECccccc
Confidence 458999999999999999999775
No 131
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=23.17 E-value=2.6e+02 Score=29.51 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=51.7
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCC---CCCceEEecceeEeCCCCeEEEEEEEE-
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNY---CKDWLHIEPYMGFILPGEKCDVKLEVY- 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~---~~~WL~v~P~~g~i~pge~~~i~~~~~- 515 (781)
-+|.++..-|.|.+ ..+..+++|.|++..|.-.+- +...+++.. ...-+-|+|.--.|.||+...++|.-.
T Consensus 33 Agv~l~~TRvIy~~----~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 108 (242)
T PRK15253 33 AGIVIYGTRVIYPA----EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP 108 (242)
T ss_pred eeEEeCceEEEEeC----CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 36677766666643 346789999999976544332 232221110 012378999999999999999988622
Q ss_pred ----Echhhhhhhcc
Q psy3271 516 ----VDKRCASKMNS 526 (781)
Q Consensus 516 ----vd~~~a~~ln~ 526 (781)
-|.|++.+||.
T Consensus 109 ~~LP~DRESlfwlnv 123 (242)
T PRK15253 109 NSLPDNKESLFYLNV 123 (242)
T ss_pred CCCCcceeEEEEEEE
Confidence 24466666653
No 132
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=23.07 E-value=32 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCceEEecceeEeCCCCeEEEEEEEEE
Q psy3271 490 KDWLHIEPYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 490 ~~WL~v~P~~g~i~pge~~~i~~~~~v 516 (781)
+|+|++.|. .++.+|+.++++..-..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~~ 27 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGPY 27 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecCC
Confidence 589999995 68999999998887653
No 133
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=22.64 E-value=3.9e+02 Score=27.96 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecc-ee-eEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTG-QV-PVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g-~~-~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-++.++..-|.|.+ .....+++|.|++ +- -..-..+...+++.. .-+-|+|.--.|.||++..++|.-
T Consensus 27 Agi~l~~TRvIy~~----~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~--~pFivtPPlfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 27 GGIALGATRVIYPQ----GSKQTSLPIINSSASNVFLIQSWVANADGSRS--TDFIITPPLFVIQPKKENILRIMY 96 (228)
T ss_pred ceEEECcEEEEEcC----CCceEEEEEEeCCCCccEEEEEEEecCCCCcc--CCEEEcCCeEEECCCCceEEEEEE
Confidence 35666666666643 3467899999998 32 333444443333321 237899999999999998888764
No 134
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=22.55 E-value=2.8e+02 Score=29.39 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=51.3
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeeccee-eEEEE-EEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE---
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQV-PVQFE-FIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY--- 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~-~~~~~-f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~--- 515 (781)
-+|.++..-|.|.+ ..+..+++|.|++.- |.-.+ .+...++.... .-+-|+|.--.|.||+...++|.-.
T Consensus 25 Agv~l~~TRVIy~~----~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~-~pFiVtPPlfRl~p~~~~~lRI~~~~~~ 99 (250)
T PRK15285 25 AAIAPDRTRLVFRG----EDKSISVDLKNANSKLPYLAQSWVEDEKGVKIT-SPLIVVPPVQRIEPSAIGQVKIQGMPAL 99 (250)
T ss_pred EeEEeCccEEEEcC----CCceEEEEEEeCCCCCcEEEEEEeeCCCCCccc-CCEEEcCCeEEECCCCceEEEEEECCCC
Confidence 46666666666643 446789999999843 33222 33332222111 2378999999999999988888732
Q ss_pred ----Echhhhhhhcc
Q psy3271 516 ----VDKRCASKMNS 526 (781)
Q Consensus 516 ----vd~~~a~~ln~ 526 (781)
-|.|++.+||.
T Consensus 100 ~~LP~DRESlfwlnv 114 (250)
T PRK15285 100 ASLPQDRETLFYYNV 114 (250)
T ss_pred CCCCCCceEEEEEEE
Confidence 25577766663
No 135
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=22.54 E-value=3.9e+02 Score=27.99 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=51.3
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCC----CCceEEecceeEeCCCCeEEEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYC----KDWLHIEPYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~----~~WL~v~P~~g~i~pge~~~i~~~~~v 516 (781)
-+|.++..-|.|.+ .....+|+|.|++..|.-.+---..++.... ..-+-|+|.--.|.||+.-.++|.-.=
T Consensus 10 A~v~l~~TRvI~~~----~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~ 85 (233)
T PRK15246 10 AAVNIDRTRIIFAS----DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSS 85 (233)
T ss_pred EEEEECceEEEEcC----CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECC
Confidence 35666666666653 3468899999999877655432211111111 124789999999999999988877431
Q ss_pred ------chhhhhhhc
Q psy3271 517 ------DKRCASKMN 525 (781)
Q Consensus 517 ------d~~~a~~ln 525 (781)
|.|++.+||
T Consensus 86 ~~~LP~DRESlf~ln 100 (233)
T PRK15246 86 RQQLATDRESLFWLN 100 (233)
T ss_pred CCCCCCCceEEEEEE
Confidence 345555555
No 136
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=21.38 E-value=4e+02 Score=27.67 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=46.1
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCC-CCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSN-YCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~-~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-++.+++.-|.|.. ..+..+|+|.|+|..|...+- +...+++. ....-+-|+|.--.|.||++..|+|.-
T Consensus 22 a~i~l~~TRvi~~~----~~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 93 (227)
T PRK15299 22 AGINIGTTRVIFHG----DAKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR 93 (227)
T ss_pred eeEEECceEEEEeC----CCcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE
Confidence 46667766666643 346789999999986655542 22222111 111337899999999999999888763
No 137
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=21.19 E-value=2.5e+02 Score=28.08 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=43.0
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeecceee----EEEEEEEecCCCCCCC--------------------------Cc
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQVP----VQFEFIKKFDDSNYCK--------------------------DW 492 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~----~~~~f~~~~~~~~~~~--------------------------~W 492 (781)
|.++-..+-.||-||= ..-.|+|+|.+.+. +.|+|--+-......+ .+
T Consensus 38 v~v~~~gf~~GD~NYP--I~Pkl~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiGGL~gdf 115 (180)
T PF06483_consen 38 VSVSFTGFKLGDSNYP--INPKLTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIGGLKGDF 115 (180)
T ss_pred EEEEeCCcccCCCCCC--cCCcEEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCCcccccCCce
Confidence 3444455666888864 35668999986543 5788864321111111 12
Q ss_pred eEEe---cceeEeCCCCeEEEEEEEEE
Q psy3271 493 LHIE---PYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 493 L~v~---P~~g~i~pge~~~i~~~~~v 516 (781)
=+|+ |..-.|.||+++++.+.-++
T Consensus 116 Hrvs~tlp~wqslapG~s~~~~~~YyL 142 (180)
T PF06483_consen 116 HRVSFTLPAWQSLAPGASVELDMVYYL 142 (180)
T ss_pred EEEEEECCCccccCCCCEEEEeEEEEe
Confidence 2222 45568899999999888765
No 138
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.02 E-value=1.8e+02 Score=33.40 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred ceeeeEEEEeecceeeEEEEEEEecCCCCCCCCce-EEecce-eEeCCCCeEEEEEEEEEchhhhhhhccccccccceEE
Q psy3271 459 EAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWL-HIEPYM-GFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILV 536 (781)
Q Consensus 459 ~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL-~v~P~~-g~i~pge~~~i~~~~~vd~~~a~~ln~g~~~l~diLv 536 (781)
+.+.-.+.|.|+|.+|.+ --+.+-+.+.. |= +|+|.. -.|+|||+.+|.+++.+.+++-.
T Consensus 397 ee~~i~i~I~NsGna~Lt---dIkl~v~~Pqg-Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~a-------------- 458 (513)
T COG1470 397 EEKTIRISIENSGNAPLT---DIKLTVNGPQG-WEIEVDESTIPSLEPGESKTVSLTITVPEDAGA-------------- 458 (513)
T ss_pred ccceEEEEEEecCCCccc---eeeEEecCCcc-ceEEECcccccccCCCCcceEEEEEEcCCCCCC--------------
Q ss_pred EeeecCCceEEEeecc
Q psy3271 537 LHLEGGKDLFITVTGS 552 (781)
Q Consensus 537 L~le~G~d~FI~v~g~ 552 (781)
.||+|++++.
T Consensus 459 ------GdY~i~i~~k 468 (513)
T COG1470 459 ------GDYRITITAK 468 (513)
T ss_pred ------CcEEEEEEEe
No 139
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.61 E-value=4.5e+02 Score=27.81 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=48.7
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEE---
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYV--- 516 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~v--- 516 (781)
-++.++..-|.|.+ .....+|+|.|++..|.-.+- +...++.. ..-+-|+|+--.|.||+...++|.-.=
T Consensus 40 Agi~l~~TRvIy~~----~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~--~~pFiVtPPLfRLep~~~~~lRIi~~~~~L 113 (246)
T PRK15233 40 YGLRLGTTRVIYKE----DAPSTSFWIMNEKEYPILVQTQVYNDDKSS--KAPFIVTPPILKVESNARTRLKVIPTSNLF 113 (246)
T ss_pred eeEEeCceEEEEeC----CCcEEEEEEEcCCCCcEEEEEEEecCCCCc--cCCEEECCCeEEECCCCceEEEEEECCCCC
Confidence 35555555555432 236789999999976543332 22222221 123789999999999999998887431
Q ss_pred --chhhhhhhc
Q psy3271 517 --DKRCASKMN 525 (781)
Q Consensus 517 --d~~~a~~ln 525 (781)
|.|++.+||
T Consensus 114 P~DRESlfwln 124 (246)
T PRK15233 114 NKNEESLYWLC 124 (246)
T ss_pred CcCceEEEEEE
Confidence 345555555
No 140
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.57 E-value=2.9e+02 Score=26.82 Aligned_cols=82 Identities=28% Similarity=0.361 Sum_probs=47.6
Q ss_pred eeeEEEEeecceeeE----EEEEEEec-----CCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhhccc-
Q psy3271 461 QNKTLIIANTGQVPV----QFEFIKKF-----DDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKMNSG- 527 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~----~~~f~~~~-----~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~ln~g- 527 (781)
...+|++.|||.-|. +|.|..-. |...... .+..-++| ..+||++.+|++.-+--...+..+|.-
T Consensus 20 ~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G--~RLdIPAGTAVRFEPGe~ktV~LV~igG~R~V~Gfnglv 97 (162)
T PRK13205 20 EAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYG--FRLDIPSGTAVRLEPGDARTVNLVAIGGDRIVAGFRDLV 97 (162)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcC--cccccCCCCeEeECCCCeEEEEEEEccCceEEEccCccc
Confidence 578899999996555 56665422 1111111 12232233 679999999999876655666666532
Q ss_pred cccccceEEEeeecCCc
Q psy3271 528 QDKIYDILVLHLEGGKD 544 (781)
Q Consensus 528 ~~~l~diLvL~le~G~d 544 (781)
...+++..+-+-++-.|
T Consensus 98 ~G~ld~~~~~~~~~~~~ 114 (162)
T PRK13205 98 DGPLEDLKVNVWEGRED 114 (162)
T ss_pred cCccCcceeeeEecccc
Confidence 24455555544554444
No 141
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=20.27 E-value=4e+02 Score=24.82 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=44.7
Q ss_pred eeeeceeeeEEEEeecceeeEEEEEEEecC-------------C---C----CCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 455 LRFLEAQNKTLIIANTGQVPVQFEFIKKFD-------------D---S----NYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 455 v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~-------------~---~----~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
+.=.+.+.-.++|.|++.-+.+|+.-.... . + .....|+++... -+|.||++..|.+++
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~-Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE-VTLPPNESKTVTFTI 101 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcE-EEECCCCEEEEEEEE
Confidence 444566788899999998888887543210 0 0 123467766555 899999999999999
Q ss_pred EEchh
Q psy3271 515 YVDKR 519 (781)
Q Consensus 515 ~vd~~ 519 (781)
.+-.+
T Consensus 102 ~~P~~ 106 (121)
T PF06030_consen 102 KMPKK 106 (121)
T ss_pred EcCCC
Confidence 88443
No 142
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=20.27 E-value=2.1e+02 Score=37.47 Aligned_cols=56 Identities=30% Similarity=0.287 Sum_probs=35.2
Q ss_pred ceeeeEEEEeecceeeEEEEEEEecCC-----------C-------------CCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 459 EAQNKTLIIANTGQVPVQFEFIKKFDD-----------S-------------NYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 459 ~~~~~~l~i~N~g~~~~~~~f~~~~~~-----------~-------------~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
|...-+|+|.|+|.+|+.|=.+.-.|. . -...+++++.... .|.||+++++++++
T Consensus 799 E~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~-~I~Pg~~~~~~~~~ 877 (1185)
T PF08626_consen 799 EKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP-PIPPGESATFTVEV 877 (1185)
T ss_pred cEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC-ccCCCCEEEEEEEe
Confidence 456778999999999987644431110 0 0112334443222 99999999999995
Q ss_pred E
Q psy3271 515 Y 515 (781)
Q Consensus 515 ~ 515 (781)
.
T Consensus 878 ~ 878 (1185)
T PF08626_consen 878 D 878 (1185)
T ss_pred c
Confidence 3
Done!