Query psy3271
Match_columns 781
No_of_seqs 480 out of 2712
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:48:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.9E-86 1.3E-90 705.0 36.4 297 1-417 8-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 3.7E-79 1.3E-83 652.9 30.6 285 1-414 8-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 1.1E-74 3.7E-79 632.0 35.2 309 1-435 25-339 (347)
4 3qis_A Inositol polyphosphate 100.0 6.2E-74 2.1E-78 632.2 29.7 353 414-772 1-366 (366)
5 2xsw_A 72 kDa inositol polypho 100.0 5.8E-72 2E-76 611.6 31.9 286 1-417 26-326 (357)
6 2imq_X Salivary nitrophorin; f 100.0 4.6E-59 1.6E-63 497.8 22.3 241 1-301 7-250 (282)
7 3qbt_B Inositol polyphosphate 100.0 2.1E-35 7.2E-40 281.2 10.7 139 418-556 2-140 (140)
8 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.6E-34 5.4E-39 293.3 16.4 184 553-769 4-198 (202)
9 2ee4_A RHO GTPase activating p 100.0 1.2E-34 4.1E-39 295.7 15.0 167 548-741 3-178 (209)
10 3byi_A RHO GTPase activating p 100.0 3.3E-34 1.1E-38 293.5 18.1 184 551-768 13-206 (214)
11 3msx_B RHO GTPase-activating p 100.0 2.6E-34 9E-39 291.5 16.6 183 553-770 8-197 (201)
12 3kuq_A RHO GTPase-activating p 100.0 1.2E-33 4E-38 292.0 20.2 194 550-769 13-225 (228)
13 1tx4_A P50-rhogap; complex (GT 100.0 4.9E-34 1.7E-38 288.7 14.2 162 553-738 4-172 (198)
14 3fk2_A Glucocorticoid receptor 100.0 1.8E-33 6.3E-38 293.8 17.1 185 550-769 46-239 (246)
15 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 2.3E-33 8E-38 290.1 17.7 161 553-740 17-188 (229)
16 1ow3_A RHO-GTPase-activating p 100.0 9.2E-34 3.1E-38 295.3 13.4 167 548-738 35-208 (242)
17 1pbw_A Rhogap domain, phosphat 100.0 2.1E-33 7.2E-38 287.8 11.5 185 556-776 6-201 (216)
18 3eap_A RHO GTPase-activating p 100.0 1.7E-32 5.7E-37 290.3 16.6 213 537-777 39-261 (271)
19 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.7E-31 5.7E-36 270.7 20.0 169 596-770 14-191 (201)
20 1f7c_A Rhogap protein; GTPase 100.0 1.6E-31 5.4E-36 276.6 13.5 187 556-773 17-216 (231)
21 2xs6_A Phosphatidylinositol 3- 100.0 3.8E-32 1.3E-36 277.1 3.6 184 554-769 19-207 (214)
22 3cxl_A N-chimerin; SH2, RHO-GA 100.0 3.6E-30 1.2E-34 292.8 17.2 181 555-768 267-458 (463)
23 3mtc_A Type II inositol-1,4,5- 99.7 6.2E-18 2.1E-22 180.2 9.4 161 300-460 5-196 (313)
24 4a9c_A Phosphatidylinositol-3, 99.6 1.7E-15 5.7E-20 161.9 5.5 150 300-460 5-197 (316)
25 1i9z_A Synaptojanin, phosphati 99.5 3.1E-14 1.1E-18 155.1 6.9 168 286-461 13-214 (347)
26 4gz1_A Tyrosyl-DNA phosphodies 99.4 2E-12 6.8E-17 132.6 17.5 66 150-223 99-164 (256)
27 4fva_A 5'-tyrosyl-DNA phosphod 99.3 4.2E-12 1.5E-16 130.4 13.1 68 151-223 104-171 (256)
28 4f1h_A Tyrosyl-DNA phosphodies 99.3 9.5E-12 3.3E-16 125.9 14.3 63 152-222 95-157 (250)
29 3teb_A Endonuclease/exonucleas 99.3 1.4E-11 4.8E-16 127.9 15.9 62 150-222 120-181 (266)
30 4gew_A 5'-tyrosyl-DNA phosphod 99.3 1.5E-11 5.1E-16 135.3 13.3 67 152-223 211-277 (362)
31 2xsw_A 72 kDa inositol polypho 99.1 1E-10 3.4E-15 127.8 9.0 148 301-461 24-211 (357)
32 1ako_A Exonuclease III; AP-end 99.1 2.3E-10 7.8E-15 118.8 10.5 66 151-223 87-157 (268)
33 3l1w_A Uncharacterized protein 99.0 4.8E-09 1.6E-13 108.5 17.2 64 150-223 107-172 (257)
34 3i41_A Beta-hemolysin; beta to 99.0 8.4E-10 2.9E-14 118.9 10.7 69 150-224 147-221 (317)
35 1zwx_A SMCL, sphingomyelinase- 99.0 1.5E-09 5E-14 115.1 11.7 68 150-223 128-201 (301)
36 3g6s_A Putative endonuclease/e 98.9 3.5E-09 1.2E-13 110.3 12.6 63 151-223 114-178 (267)
37 2ddr_A Sphingomyelin phosphodi 98.8 9.2E-09 3.1E-13 109.1 11.6 67 150-222 128-200 (306)
38 2e6j_A Hydin protein; PAPD, st 98.8 4.2E-09 1.4E-13 95.6 7.2 101 440-552 7-108 (112)
39 3mpr_A Putative endonuclease/e 98.8 1.2E-08 4.2E-13 108.5 11.8 65 151-223 118-184 (298)
40 2jc4_A Exodeoxyribonuclease II 98.8 4.8E-09 1.6E-13 107.9 7.3 51 166-223 98-152 (256)
41 2imq_X Salivary nitrophorin; f 98.7 1.2E-09 4.2E-14 115.8 -0.8 87 301-393 5-94 (282)
42 1vyb_A ORF2 contains A reverse 98.6 2.2E-07 7.6E-12 94.1 13.6 55 155-223 97-151 (238)
43 2jc5_A Exodeoxyribonuclease; h 98.6 5.4E-08 1.8E-12 100.2 7.0 37 3-43 2-40 (259)
44 1wdu_A TRAS1 ORF2P; four-layer 98.6 2.9E-07 1E-11 94.6 12.4 59 151-222 101-159 (245)
45 2o3h_A DNA-(apurinic or apyrim 98.5 2.6E-07 8.9E-12 97.0 10.5 38 2-43 28-67 (285)
46 2voa_A AF_EXO, XTHA, exodeoxyr 98.5 5.5E-07 1.9E-11 92.6 12.8 37 3-43 2-39 (257)
47 2ys4_A Hydrocephalus-inducing 98.5 3.3E-07 1.1E-11 84.6 9.4 96 440-553 23-118 (122)
48 1hd7_A DNA-(apurinic or apyrim 98.4 3.1E-07 1.1E-11 98.6 8.8 37 2-42 61-99 (318)
49 2j63_A AP-endonuclease; base e 98.4 9.2E-07 3.2E-11 100.0 11.2 38 2-43 149-191 (467)
50 3g91_A MTH0212, exodeoxyribonu 98.4 8.4E-07 2.9E-11 92.2 9.3 38 2-43 3-42 (265)
51 4b8c_D Glucose-repressible alc 97.6 1.1E-05 3.9E-10 96.3 1.2 62 163-224 545-610 (727)
52 2a40_B Deoxyribonuclease-1; WA 97.6 3.7E-05 1.3E-09 79.7 4.4 61 153-223 111-174 (260)
53 2ei9_A Non-LTR retrotransposon 97.5 6.4E-05 2.2E-09 77.4 5.2 35 2-40 7-42 (240)
54 3ngq_A CCR4-NOT transcription 97.4 0.00023 7.8E-09 78.7 8.1 70 165-238 195-270 (398)
55 2qsv_A Uncharacterized protein 96.8 0.0023 8E-08 64.8 7.7 102 442-556 2-108 (220)
56 1sr4_B CDT B, cytolethal diste 96.7 0.0017 5.7E-08 67.3 6.4 37 3-42 5-47 (261)
57 2qsv_A Uncharacterized protein 96.7 0.0042 1.4E-07 62.9 9.0 70 438-515 115-184 (220)
58 2f1n_A CDT B, cytolethal diste 96.2 0.012 4E-07 60.5 8.8 62 152-223 130-191 (262)
59 1msp_A MSP, major sperm protei 95.9 0.026 8.8E-07 52.0 8.9 67 442-515 8-75 (126)
60 1z9l_A Vesicle-associated memb 95.9 0.021 7.3E-07 52.6 8.4 67 442-515 10-77 (128)
61 1wic_A Hypothetical protein ri 95.8 0.018 6.2E-07 54.8 7.7 67 442-515 18-85 (152)
62 1row_A SSP-19, MSP-domain prot 95.7 0.037 1.3E-06 49.5 8.7 64 442-515 2-65 (109)
63 2cri_A Vesicle-associated memb 95.6 0.03 1E-06 52.9 8.1 66 442-514 14-80 (147)
64 1m1s_A WR4; structural genomic 95.4 0.076 2.6E-06 47.9 9.5 64 442-515 10-73 (116)
65 3rfr_A PMOB; membrane, oxidore 78.3 12 0.0004 40.3 10.9 104 449-556 285-412 (419)
66 1yew_A Particulate methane mon 69.8 36 0.0012 36.2 11.9 105 450-556 252-380 (382)
67 2xg5_A PAPD, chaperone protein 40.6 90 0.0031 30.8 8.8 68 443-514 2-71 (218)
68 4ay0_A Chaperone protein CAF1M 39.4 99 0.0034 30.6 8.8 80 442-525 13-98 (218)
69 3q48_A Chaperone CUPB2; IG fol 37.5 81 0.0028 32.1 8.0 80 442-525 29-117 (257)
70 4djm_A DRAB; chaperone, PILI; 36.6 1E+02 0.0035 31.0 8.5 80 441-526 22-107 (239)
71 1klf_A FIMC chaperone, chapero 36.2 1.2E+02 0.0041 29.6 8.8 77 443-525 2-86 (205)
72 2co7_B SAFB chaperone, putativ 35.6 1.1E+02 0.0039 30.1 8.6 79 441-525 12-96 (221)
73 4b9f_A Cellulosomal-scaffoldin 31.3 1E+02 0.0035 28.7 6.9 26 491-516 90-115 (152)
74 2yka_B ORF57 protein, 52 kDa i 35.7 11 0.00039 23.6 0.0 10 288-297 7-16 (26)
75 3gfu_C Chaperone protein FAEE; 27.7 2E+02 0.0067 28.6 8.7 78 443-525 2-86 (224)
76 3zuc_A Cellulosomal scaffoldin 27.5 1E+02 0.0035 28.8 6.2 27 490-516 84-112 (153)
77 1l4i_A SFAE protein; periplasm 26.5 1.7E+02 0.0058 28.5 8.0 65 443-513 2-68 (206)
78 1so9_A Cytochrome C oxidase as 26.5 76 0.0026 30.0 5.1 23 500-522 106-128 (164)
79 3zyz_A Beta-D-glucoside glucoh 24.1 1.6E+02 0.0053 34.6 8.4 55 461-516 615-673 (713)
80 3idu_A Uncharacterized protein 23.1 2.6E+02 0.0088 25.0 7.9 67 439-514 15-82 (127)
81 4ep8_B Urease subunit beta; al 21.1 1.6E+02 0.0056 25.3 5.6 62 461-524 20-93 (101)
82 2x41_A Beta-glucosidase; hydro 20.8 2.1E+02 0.0072 33.5 8.6 56 460-516 616-676 (721)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.9e-86 Score=705.00 Aligned_cols=297 Identities=57% Similarity=1.013 Sum_probs=281.9
Q ss_pred CEEEEEEeecCCCCCCCCchhhhcCCCCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHhhcCCCCceEEEEEEEe
Q psy3271 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRL 80 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~~~l~~wl~~~~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y~~v~~~~l 80 (781)
++|+|+|||||+..|+++|.+||..+..+||||||||||+++++.+++..++...+.|.+.|.++|+++..|++|++.+|
T Consensus 8 ~~i~v~TwNvng~~~~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~~l 87 (313)
T 3mtc_A 8 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRL 87 (313)
T ss_dssp EEEEEEEEECTTCCCCSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEEEE
T ss_pred cEEEEEEEEcCCccCchhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEech
Confidence 58999999999999999999999987678999999999999999999888888899999999999998778999999999
Q ss_pred eceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccccCceEEEEE
Q psy3271 81 VGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRL 160 (781)
Q Consensus 81 ~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gnKG~v~i~~ 160 (781)
+||+|+||+|.++.+ +|++|++++||||++|.+||||||++||
T Consensus 88 vGl~l~Vfvr~~~~~-------------------------------------~i~~v~~~~v~tG~~g~~GNKGaV~ir~ 130 (313)
T 3mtc_A 88 VGIMLLLYVKQEHAA-------------------------------------YISEVEAETVGTGIMGRMGNKGGVAIRF 130 (313)
T ss_dssp TTEEEEEEEEGGGGG-------------------------------------GEEEEEEEEEECSGGGTSTTSEEEEEEE
T ss_pred hhhhhhhhhhhhhhh-------------------------------------hcceeEeeeecccccccccCCceEEEEE
Confidence 999999999999999 9999999999999999999999999999
Q ss_pred EecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCC---CCCCCCCCCcceeEecccCCcccCCCHHHHHHHHhcC
Q psy3271 161 DLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGF---LPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAG 237 (781)
Q Consensus 161 ~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~---~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~ 237 (781)
.+++|+|||||||||||++++++||+||.+|++++.|... .++..|.+||++||||||||||++++.++++++++++
T Consensus 131 ~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~ 210 (313)
T 3mtc_A 131 QFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK 210 (313)
T ss_dssp EETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTT
T ss_pred EECCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999732 2345788999999999999999878999999999999
Q ss_pred ChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCCeeEEeeeeccCCCCC
Q psy3271 238 KYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSP 317 (781)
Q Consensus 238 ~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~~~~~~gt~nv~g~~~ 317 (781)
+|+.||++|||+++|+++++|.||.|++|+|+|||||+.|++.||+|+|+|+|||||||||++..++
T Consensus 211 ~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL~~~~~i~------------- 277 (313)
T 3mtc_A 211 DFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKNIT------------- 277 (313)
T ss_dssp CHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSEE-------------
T ss_pred CHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEecccccceEEEecCCeE-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred CCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccceeeeeeccCCCc
Q psy3271 318 SCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVDYKSVPSL 397 (781)
Q Consensus 318 ~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~~~~~~y~s~~~~ 397 (781)
++.|++++.+
T Consensus 278 ----------------------------------------------------------------------~~~Y~s~~~~ 287 (313)
T 3mtc_A 278 ----------------------------------------------------------------------QLSYQSHMAL 287 (313)
T ss_dssp ----------------------------------------------------------------------EEEEEECTTC
T ss_pred ----------------------------------------------------------------------EEeeeeccCc
Confidence 7789999999
Q ss_pred cccCCcceEEEEEeeeeecC
Q psy3271 398 KISDHKPVMSLFNSDIRVID 417 (781)
Q Consensus 398 ~~SDHkPV~a~f~~~~~~v~ 417 (781)
..||||||+|.|.+.+++|-
T Consensus 288 ~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 288 KTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp CSSSSCCEEEEEEEEEEEEC
T ss_pred cCCCccCeEEEEEEEEEEee
Confidence 99999999999999999873
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=3.7e-79 Score=652.90 Aligned_cols=285 Identities=32% Similarity=0.619 Sum_probs=245.6
Q ss_pred CEEEEEEeecCCCCCCCCchhhhcCC-----------CCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHhhcCC-
Q psy3271 1 IQVFIGTWNVNGQSPSCDLSDWLTTT-----------VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHP- 68 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~~~l~~wl~~~-----------~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~~l~~- 68 (781)
|+|||||||||++.|+++|.+||.+. ..+||||||||||+.. ..+.|.+.|.++|+.
T Consensus 8 i~i~vgTwNv~g~~p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~-----------~~~~W~~~i~~~L~~~ 76 (316)
T 4a9c_A 8 ISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-----------GDREWLDLLRGGLKEL 76 (316)
T ss_dssp EEEEEEEEECTTSCCCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS-----------CHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeEcCCcCCCcchhHhhcccccccCcccccccCCCcEEEEecccccc-----------chhHHHHHHHHHhccc
Confidence 58999999999999999999999753 1368999999999842 468999999999964
Q ss_pred -CCceEEEEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccc
Q psy3271 69 -GAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIM 147 (781)
Q Consensus 69 -~~~Y~~v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~ 147 (781)
...|.+|++++|+|++|+||+|.++.+ +|++|++++||||++
T Consensus 77 ~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~-------------------------------------~I~~v~~~~v~tG~~ 119 (316)
T 4a9c_A 77 TDLDYRPIAMQSLWNIKVAVLVKPEHEN-------------------------------------RISHVSTSSVKTGIA 119 (316)
T ss_dssp HSCCCEEEEEEEETTEEEEEEECGGGGG-------------------------------------GEEEEEEEEEEEC--
T ss_pred cCCCEEEEEeeeehheeeeeEEeHHHhh-------------------------------------hCcccccceeeeeee
Confidence 346999999999999999999999999 999999999999999
Q ss_pred cccccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCC--CCCCCCCCCcceeEecccCCcccCC
Q psy3271 148 GKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGF--LPPKSIKDHDQIYWLGDLNYRITDL 225 (781)
Q Consensus 148 g~~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~--~~~~~i~~~d~~f~~GDlNyRi~~~ 225 (781)
|.+||||||+|||.+++++|||||||||||++++++||+||.+|++++.|+.. .......+|||+||+|||||||+ +
T Consensus 120 g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~-~ 198 (316)
T 4a9c_A 120 NTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD-M 198 (316)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBS-S
T ss_pred EecCCCceEEEEEEECCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcC-C
Confidence 99999999999999999999999999999999999999999999999999732 11223457899999999999998 8
Q ss_pred CHHHHHHHHhcCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCC-CcC------CCCCCcCCccccccee
Q psy3271 226 DLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTD-DWD------SSEKNRAPAWCDRVLY 298 (781)
Q Consensus 226 ~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~-~yd------~~~k~R~PswcDRIL~ 298 (781)
+.+++++++++++|+.||++|||+++|+++++|.||+|++|+|+|||||+.|++ .|+ +++|+|+|||||||||
T Consensus 199 ~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~ 278 (316)
T 4a9c_A 199 DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILW 278 (316)
T ss_dssp CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEE
T ss_pred CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEe
Confidence 999999999999999999999999999999999999999999999999999995 564 5678899999999999
Q ss_pred ccCCeeEEeeeeccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhh
Q psy3271 299 KGDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKIC 378 (781)
Q Consensus 299 ~~~~~~~~~gt~nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~ 378 (781)
++.+..
T Consensus 279 ~~~~~~-------------------------------------------------------------------------- 284 (316)
T 4a9c_A 279 KSYPET-------------------------------------------------------------------------- 284 (316)
T ss_dssp EECTTC--------------------------------------------------------------------------
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 864321
Q ss_pred hheeccceeeeeeccCCCccccCCcceEEEEEeeee
Q psy3271 379 LVRLVGIRQQVDYKSVPSLKISDHKPVMSLFNSDIR 414 (781)
Q Consensus 379 ~~~l~g~~~~~~y~s~~~~~~SDHkPV~a~f~~~~~ 414 (781)
-+.++.|.+++.+..||||||+|.|.+.+.
T Consensus 285 ------~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 285 ------HIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp ------CEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred ------ceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 012678999999999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=1.1e-74 Score=632.01 Aligned_cols=309 Identities=38% Similarity=0.707 Sum_probs=279.2
Q ss_pred CEEEEEEeecCCCCCCCCchhhhcCC-CCCCcEEEEecccc-CCChhhhhccCCchHHHHHHHHHhhcC----CCCceEE
Q psy3271 1 IQVFIGTWNVNGQSPSCDLSDWLTTT-VDPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLH----PGAAYQK 74 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~~~l~~wl~~~-~~~~Di~vig~QE~-~~~~~~~~~~~~~~~~~w~~~i~~~l~----~~~~Y~~ 74 (781)
++|+|+|||||++.|+.+|.+||.+. ..+||||||||||+ ++++.+++..++...+.|.+.|.++|+ .+..|.+
T Consensus 25 ~~i~v~TwNv~g~~~~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~ 104 (347)
T 1i9z_A 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQ 104 (347)
T ss_dssp EEEEEEEEECTTCCCCSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEE
T ss_pred cEEEEEeEecCCCCCchhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCceeE
Confidence 47999999999999988999999864 36799999999998 788888776666778899999999996 3568999
Q ss_pred EEEEEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccccCc
Q psy3271 75 ICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKG 154 (781)
Q Consensus 75 v~~~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gnKG 154 (781)
+.+.+|+|++|+||+|.++.+ +|++|++++++||++|.+||||
T Consensus 105 v~s~~l~g~~L~Vfvr~~~~~-------------------------------------~i~~v~~~~v~tG~~g~~gnKG 147 (347)
T 1i9z_A 105 LRSGQLVGTALMIFCKESCLP-------------------------------------SIKNVEGTVKKTGLGGVSGNKG 147 (347)
T ss_dssp EEEEEETTEEEEEEEEGGGGG-------------------------------------GEEEEEEEEEECCCC----CCE
T ss_pred EEEeeccceEEEEEEehHhhh-------------------------------------hccceeeeeEeccCCCccCCCc
Confidence 999999999999999999998 8999999999999999999999
Q ss_pred eEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHHHHHHHH
Q psy3271 155 GVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLI 234 (781)
Q Consensus 155 ~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~~i 234 (781)
||++||.+++++||||||||+||+.+.++||+||.+|++++.|.. ...+.+||++|||||||||++ ++.+.+++++
T Consensus 148 av~vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~---~~~i~~~d~v~~~GDlNyRi~-~~~~~v~~~i 223 (347)
T 1i9z_A 148 AVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRR---GRSIFNHDYVVWFGDFNYRIS-LTYEEVVPCI 223 (347)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGG---GCCTTSSSEEEEEEECCCCBS-SCHHHHHHHH
T ss_pred eEEEEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCc---ccccccCccEEEecccccccC-CCHHHHHHHH
Confidence 999999999999999999999999999999999999999999873 245788999999999999999 8999999999
Q ss_pred hcCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCCeeEEeeeeccCC
Q psy3271 235 NAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNG 314 (781)
Q Consensus 235 ~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~~~~~~gt~nv~g 314 (781)
++++++.||++|||+++++++++|.||.|++|+|+|||||+.|++.||+|+|+|+|||||||||++ .++
T Consensus 224 ~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R~PsWcDRIL~~~-~l~---------- 292 (347)
T 1i9z_A 224 AQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG-ELV---------- 292 (347)
T ss_dssp HTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEES-SCE----------
T ss_pred hhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccccccccCCcccceEEEeC-CEE----------
Confidence 999999999999999999999999999999999999999999999999999999999999999976 333
Q ss_pred CCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccceeeeeeccC
Q psy3271 315 QSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVDYKSV 394 (781)
Q Consensus 315 ~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~~~~~~y~s~ 394 (781)
++.|+++
T Consensus 293 -------------------------------------------------------------------------~~~Y~~~ 299 (347)
T 1i9z_A 293 -------------------------------------------------------------------------PHSYQSV 299 (347)
T ss_dssp -------------------------------------------------------------------------EEEEEEC
T ss_pred -------------------------------------------------------------------------EEEEEec
Confidence 6679998
Q ss_pred CCccccCCcceEEEEEeeeeecCHHHHHHHHHHHHHHhhhh
Q psy3271 395 PSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKL 435 (781)
Q Consensus 395 ~~~~~SDHkPV~a~f~~~~~~v~~~~~~~~~~e~~~~~~~~ 435 (781)
. +..||||||.|.|.+.+..+|+++|+++++|+.+++.+.
T Consensus 300 ~-~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~~~~~~~~~ 339 (347)
T 1i9z_A 300 P-LYYSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQE 339 (347)
T ss_dssp C-CCSSSBCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred C-ccCCCcCCceeEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 7 999999999999999999999999999999999988654
No 4
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=6.2e-74 Score=632.23 Aligned_cols=353 Identities=44% Similarity=0.799 Sum_probs=286.6
Q ss_pred eecCHHHHHHHHHHHHHHhhhhccccCCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCce
Q psy3271 414 RVIDAVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWL 493 (781)
Q Consensus 414 ~~v~~~~~~~~~~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL 493 (781)
++||+++++++|+|++|++|++||+.+|+|+++++.++||+|+|+++++++|+|+|||++||+|+|++++++...|++||
T Consensus 1 ~~i~~~~~~~~~~ev~~~~d~~en~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl 80 (366)
T 3qis_A 1 KVVDERRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWL 80 (366)
T ss_dssp ---------------------------CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTE
T ss_pred CccCHHHHHHHHHHHHHHHhHHHhccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EEecceeEeCCCCeEEEEEEEEEchhhhhhhccccccccceEEEeeecCCceEEEeeccccccccccchhhhhhccCccc
Q psy3271 494 HIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNVPLR 573 (781)
Q Consensus 494 ~v~P~~g~i~pge~~~i~~~~~vd~~~a~~ln~g~~~l~diLvL~le~G~d~FI~v~g~~~~s~FG~sLe~L~~~~~pi~ 573 (781)
+|+|..|+|.|||+++|+++++|+.++|++||+|..+++||||||+++|+|+||+++|.|.+||||+||++++++++|++
T Consensus 81 ~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ve~G~d~FI~v~~~~~~s~FG~sl~~l~~~~~pir 160 (366)
T 3qis_A 81 RAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIR 160 (366)
T ss_dssp EEESCEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEEETTSCEEEEEEEEEECCCSTTSCHHHHHHCCSCTT
T ss_pred EEeCCccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEEEeCCCcEEEEeccccCCccccCcHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhcccc-------------CCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcC
Q psy3271 574 DVALGKLIELESSK-------------DSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTG 640 (781)
Q Consensus 574 ~~~~~~~~~l~~~~-------------~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g 640 (781)
+++++.+.++..++ .....+..+..||.+|++|++||+++|+++|||||++|+..++++|++.+|+|
T Consensus 161 ~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~ 240 (366)
T 3qis_A 161 EVPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS 240 (366)
T ss_dssp C---------------------------------CCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHC
T ss_pred hcChhhhhhccccchhhhcccccccccccccccCCCCCcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCC
Confidence 99999887764111 01234566789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy3271 641 SSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRL 720 (781)
Q Consensus 641 ~~~~~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM 720 (781)
....++.|+|++|++||.|||+||+||+|+++|+.|+.+.+..+.++.++.+||+.|+.+|.||+.||++|++|++.|+|
T Consensus 241 ~~~~~~~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 320 (366)
T 3qis_A 241 IPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSV 320 (366)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred CCCccccCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 88777779999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcc
Q psy3271 721 DAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSE 772 (781)
Q Consensus 721 ~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~ 772 (781)
+++|||+||||+|||++++.... +.+++.+++++|+.+||+++++|
T Consensus 321 ~~~NLA~vf~P~Llr~~~~~~~~------~~~~~~~~~v~fi~~fL~~~~~~ 366 (366)
T 3qis_A 321 NANMIATLFTSLLLRPPPNLMAR------QTPSDRQRAIQFLLGFLLGSEED 366 (366)
T ss_dssp CHHHHHHHHHHHHSCCCC--------------CHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHhhhcccCCCcchhh------hhHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999765444 35667889999999999998764
No 5
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.8e-72 Score=611.55 Aligned_cols=286 Identities=31% Similarity=0.576 Sum_probs=255.4
Q ss_pred CEEEEEEeecCCC-CCCCCchhhhcCC--CCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHhhcCCCCceEEEEE
Q psy3271 1 IQVFIGTWNVNGQ-SPSCDLSDWLTTT--VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICL 77 (781)
Q Consensus 1 ~~i~v~TwNv~~~-~p~~~l~~wl~~~--~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y~~v~~ 77 (781)
++|+|+|||||+. .++++|.+|+.+. ...||||||||||+.. ....|.+.+.++|+. .|+++.+
T Consensus 26 l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~-----------~~~~W~~~l~~~L~~--~Y~~v~s 92 (357)
T 2xsw_A 26 VALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCS-----------DRREWETRLQETLGP--HYVLLSS 92 (357)
T ss_dssp EEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCS-----------CHHHHHHHHHHHHCT--TEEEEEE
T ss_pred ceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccc-----------hHHHHHHHHHHHhCC--cccchhh
Confidence 4799999999985 4568999999642 3579999999999953 247899999999974 5999999
Q ss_pred EEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccccCceEE
Q psy3271 78 VRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVA 157 (781)
Q Consensus 78 ~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gnKG~v~ 157 (781)
.+|+|++++||+|.++.+ +|+++++++|+||++|.+||||||+
T Consensus 93 ~~l~g~~l~Vfvr~~~~~-------------------------------------~i~~v~~~~v~tG~~g~~gNKGav~ 135 (357)
T 2xsw_A 93 AAHGVLYMSLFIRRDLIW-------------------------------------FCSEVECSTVTTRIVSQIKTKGALG 135 (357)
T ss_dssp EEETTEEEEEEEEGGGGG-------------------------------------GBBCCEEEEEEEEEEETTEEEEEEE
T ss_pred hhhhhEEEEEEEchHHhh-------------------------------------cCceeEecccccccccccccccEEE
Confidence 999999999999999998 9999999999999999999999999
Q ss_pred EEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCC---------CCCCCCCcceeEecccCCcccCCCHH
Q psy3271 158 IRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLP---------PKSIKDHDQIYWLGDLNYRITDLDLT 228 (781)
Q Consensus 158 i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~---------~~~i~~~d~~f~~GDlNyRi~~~~~~ 228 (781)
+||.+++++||||||||+||++++++||+||.+|++++.|+...+ ...+.+||++||+||||||++ ++++
T Consensus 136 vr~~~~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~-~~~~ 214 (357)
T 2xsw_A 136 ISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS-GGRT 214 (357)
T ss_dssp EEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS-SCHH
T ss_pred EEEEECCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc-cchH
Confidence 999999999999999999999999999999999999999973221 113457899999999999999 7888
Q ss_pred HHHHHHh---cCChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccCCeeE
Q psy3271 229 KVKNLIN---AGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQV 305 (781)
Q Consensus 229 ~v~~~i~---~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~~~~~ 305 (781)
+++++++ .++|+.|+++|||+++++++++|.||.|++|+|+|||||+.|++.||+++|+|+|||||||||++....
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDRIL~~~~~~~- 293 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKG- 293 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSTT-
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccccCCCCCCcccceEEEecCCCC-
Confidence 9999986 579999999999999999999999999999999999999999999999999999999999999864211
Q ss_pred EeeeeccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhhheeccc
Q psy3271 306 FIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGI 385 (781)
Q Consensus 306 ~~gt~nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~~~l~g~ 385 (781)
-
T Consensus 294 -------------------------------------------------------------------------------~ 294 (357)
T 2xsw_A 294 -------------------------------------------------------------------------------D 294 (357)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred eeeeeeccCCCccccCCcceEEEEEeeeeecC
Q psy3271 386 RQQVDYKSVPSLKISDHKPVMSLFNSDIRVID 417 (781)
Q Consensus 386 ~~~~~y~s~~~~~~SDHkPV~a~f~~~~~~v~ 417 (781)
+.++.|++++.+..||||||.|.|.+.++..+
T Consensus 295 i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~ 326 (357)
T 2xsw_A 295 ICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGR 326 (357)
T ss_dssp EEEEEEEECTTCCSSSSCCEEEEEEEECCCCC
T ss_pred eEEEEeEecccccCCCcCCceeEEEEEEecCC
Confidence 12678999999999999999999999987664
No 6
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.6e-59 Score=497.84 Aligned_cols=241 Identities=20% Similarity=0.410 Sum_probs=213.1
Q ss_pred CEEEEEEeecCCCCCCCCchhhhcCC-CCCCcEEEEeccccCCChhhhhccCCchHHHHHHHHHhhcCCCCceEEEEE--
Q psy3271 1 IQVFIGTWNVNGQSPSCDLSDWLTTT-VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICL-- 77 (781)
Q Consensus 1 ~~i~v~TwNv~~~~p~~~l~~wl~~~-~~~~Di~vig~QE~~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y~~v~~-- 77 (781)
++|+|+||||++..|++++.+|+... ...||||||||||+++++.+. .....|.+.+.++|+ +..|..+.+
T Consensus 7 ~~i~V~T~Nv~~~~~~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~-----~~~~~w~~~l~~~L~-~~~Y~~v~~~~ 80 (282)
T 2imq_X 7 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKP-----QQGPACVKNFQSLLT-SKGYTKLKNTI 80 (282)
T ss_dssp EEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTT-----CCHHHHHHHHHHHHH-HTTEEEEEEEE
T ss_pred cEEEEEEEeCCCCcCchhHHHHhcccccCCCCEEEEEeeeeccccccc-----hhhHHHHHHHHHhcC-CCceEEEEecc
Confidence 47999999999888888999999742 367999999999998665431 357889999999996 346999988
Q ss_pred EEeeceEEEEEeecchhcccccccccccccccccccccccceeEEEeeecccccccceeeEeeeeecccccccccCceEE
Q psy3271 78 VRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVA 157 (781)
Q Consensus 78 ~~l~g~~l~vf~~~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~i~~~~~~~~~~~~i~~v~~~~v~~G~~g~~gnKG~v~ 157 (781)
.+++|++++||+|.++.+ .++++.+ +|++|.+|||||++
T Consensus 81 ~~~~G~~l~vf~k~~~~~-------------------------------------~i~~~~~----~~~~g~~g~kGav~ 119 (282)
T 2imq_X 81 TETMGLTVYCLEKHLDQN-------------------------------------TLKNETI----IVTVDDQKKSGGIV 119 (282)
T ss_dssp CSSEEEEEEEEGGGCCTT-------------------------------------TCCCEEE----EEECSTTSCSEEEE
T ss_pred CceeEEEEEEEEccccCc-------------------------------------cceeeee----ccccccccCCceEE
Confidence 789999999999999887 5665544 45678899999999
Q ss_pred EEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcccCCCHHHHHHHHhcC
Q psy3271 158 IRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAG 237 (781)
Q Consensus 158 i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~ 237 (781)
+||.++++++|||||||+|+.++.++|++|+..|++++.+ +.++|++|||||||||++ .+.++++++++++
T Consensus 120 ~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~--------~~~~~~vi~~GDfN~r~~-~~~~~~~~~i~~~ 190 (282)
T 2imq_X 120 TSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKK--------DDPSDFLFWIGDLNVRVE-TNATHAKSLVDQN 190 (282)
T ss_dssp EEEEETTEEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSS--------SSCCSEEEEEEECSCCBC-SCHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEEECCCCCCchHHHHHHHHHHHHHhhhc--------cCccceEEEecccccccC-CCHHHHHHHHhhc
Confidence 9999999999999999999988889999999999877653 357889999999999999 6899999999999
Q ss_pred ChhhhhchhHHHHHHHcCCcccCCccccccccCcccccCCCCCcCCCCCCcCCcccccceeccC
Q psy3271 238 KYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGD 301 (781)
Q Consensus 238 ~~~~Ll~~DqL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~~~yd~~~k~R~PswcDRIL~~~~ 301 (781)
++..|+++|||.++++ +.+|.+|.|++|+|+|||||+.+++.||+ +|+|||||||||++.
T Consensus 191 ~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~---~R~Psw~DrIl~~~~ 250 (282)
T 2imq_X 191 NIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDL---SATPSWTDRALYKSG 250 (282)
T ss_dssp CHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCT---TSCCBCCEEEEEECS
T ss_pred cHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCccccc---cCCccccceEEEecC
Confidence 9999999999999999 99999999999999999999999999986 699999999999864
No 7
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=281.23 Aligned_cols=139 Identities=47% Similarity=0.915 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEec
Q psy3271 418 AVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEP 497 (781)
Q Consensus 418 ~~~~~~~~~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P 497 (781)
+++++++|+|++|+||++||+.+|.++++...++||+|+|++.++++|+|+|||++||+|+|++++++...|++||+|+|
T Consensus 2 ~~~~~~~~~ev~r~ld~~ENe~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P 81 (140)
T 3qbt_B 2 ERRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEP 81 (140)
T ss_dssp ---------CCCCHHHHHHHHTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEES
T ss_pred chHHHHHHHHHHHHHHHHhhccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred ceeEeCCCCeEEEEEEEEEchhhhhhhccccccccceEEEeeecCCceEEEeecccccc
Q psy3271 498 YMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLFITVTGSYERS 556 (781)
Q Consensus 498 ~~g~i~pge~~~i~~~~~vd~~~a~~ln~g~~~l~diLvL~le~G~d~FI~v~g~~~~s 556 (781)
..|+|+|||+++|+|+++||..++++||.|+.+++|+||||++||+||||+|+|.|.||
T Consensus 82 ~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~Ve~G~d~fI~v~g~~~ps 140 (140)
T 3qbt_B 82 FEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDRGKDYFLTISGNYLPS 140 (140)
T ss_dssp CEEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEEETTSCEEEEEEEEEECCC
T ss_pred cccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEEEeecCCcEEEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999987
No 8
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=293.25 Aligned_cols=184 Identities=19% Similarity=0.357 Sum_probs=156.9
Q ss_pred ccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHH
Q psy3271 553 YERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILL 632 (781)
Q Consensus 553 ~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~ 632 (781)
..+++||+||+++++..+ ..+|.++.+|+++|+++|+++|||||++|+..++++
T Consensus 4 ~~~~vFG~~L~~~~~~~~--------------------------~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~ 57 (202)
T 2osa_A 4 HVKKVYSCDLTTLVKAHT--------------------------TKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIED 57 (202)
T ss_dssp ---CCTTSCHHHHHHHHT--------------------------CSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHH
T ss_pred CCCCccCCChHHHHHHcC--------------------------CCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHH
Confidence 356899999999998764 358999999999999999999999999999999999
Q ss_pred HHHHHhcC-CCCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHH
Q psy3271 633 IRNWLDTG-SSDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVY 701 (781)
Q Consensus 633 lr~~ld~g-~~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L 701 (781)
|++.+|++ ...++. .|+|++|++||.|||+||+||+|.++|+.|+.+.+ ..+.++.++.+||++|+.+|
T Consensus 58 l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L 137 (202)
T 2osa_A 58 VKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETL 137 (202)
T ss_dssp HHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999985 333442 48999999999999999999999999999998875 24678899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 702 LYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 702 ~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
.||+.||++|+++++.|+|+++|||+||||+|+|++..... ....+.....++++.+|.+.
T Consensus 138 ~~L~~~L~~v~~~~~~NkM~~~NLa~vf~P~Ll~~~~~~~~-------~~~~~~~~~~~vve~LI~~~ 198 (202)
T 2osa_A 138 RYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAM-------AALNDIRYQRLVVELLIKNE 198 (202)
T ss_dssp HHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHccccCCCCCccHH-------HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998763321 13345556667777766554
No 9
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.2e-34 Score=295.68 Aligned_cols=167 Identities=22% Similarity=0.363 Sum_probs=151.8
Q ss_pred EeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCH
Q psy3271 548 TVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLP 627 (781)
Q Consensus 548 ~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~ 627 (781)
++++.+.+++||+||++++... ..||.+|.+|++||+++|+++|||||++|+.
T Consensus 3 ~~~~~~~~~~FG~~L~~~~~~~---------------------------~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~ 55 (209)
T 2ee4_A 3 SGSSGWESNYFGMPLQDLVTAE---------------------------KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNK 55 (209)
T ss_dssp CSSSSSCCSSSSSCHHHHSCSS---------------------------CCSCHHHHHHHHHHHHTCSCCTTTTTSCCCH
T ss_pred CCCCCCCCCeeCCcHHHHHhcC---------------------------CCCChHHHHHHHHHHHhCCCCCCccccCCCH
Confidence 3567889999999999987643 2599999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHH
Q psy3271 628 SEILLIRNWLDTGSSDPL---PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSR 698 (781)
Q Consensus 628 ~~v~~lr~~ld~g~~~~~---~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~ 698 (781)
.++++|++.+|++...++ ..|+|++|++||.|||+||+||+|+++|+.|+++.+ ..+.++.++.+||+.|+
T Consensus 56 ~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~ 135 (209)
T 2ee4_A 56 TDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNY 135 (209)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHH
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHH
Confidence 999999999999976554 348999999999999999999999999999998874 34678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCC
Q psy3271 699 NVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSR 741 (781)
Q Consensus 699 ~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~ 741 (781)
.+|.||+.||++|+++++.|+|+++|||+||||+|+|++.+..
T Consensus 136 ~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~ 178 (209)
T 2ee4_A 136 DVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENR 178 (209)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccH
Confidence 9999999999999999999999999999999999999876543
No 10
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=293.51 Aligned_cols=184 Identities=18% Similarity=0.333 Sum_probs=159.7
Q ss_pred ccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHH
Q psy3271 551 GSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEI 630 (781)
Q Consensus 551 g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v 630 (781)
|....++||+||++++...+ ..||.+|++|++||+++|+++|||||++|+..++
T Consensus 13 ~~~~~~vFG~~L~~~~~~~~--------------------------~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i 66 (214)
T 3byi_A 13 GLIKDQIFGSHLHKVCEREN--------------------------STVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATI 66 (214)
T ss_dssp TSCCCCSTTSCHHHHHHHHT--------------------------CSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHH
T ss_pred CCCcCCccCCcHHHHHHHcC--------------------------CCCChHHHHHHHHHHHhCCCCCCccccCCCHHHH
Confidence 45677899999999998664 4699999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHH
Q psy3271 631 LLIRNWLDTGSSDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNV 700 (781)
Q Consensus 631 ~~lr~~ld~g~~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~ 700 (781)
++|++.+|++...++. .|+|++|++||.|||+||+||+|+++|+.|+.+.+ ..+.++.++.+||++|+.+
T Consensus 67 ~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~ 146 (214)
T 3byi_A 67 QKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDT 146 (214)
T ss_dssp HHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999766654 38999999999999999999999999999998875 2567889999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 701 YLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 701 L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
|.||+.||++|+++++.|+|+++|||+||||+|+|++...... ........++++.+|.+
T Consensus 147 L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~~~~--------~~~~~~~~~vve~LI~~ 206 (214)
T 3byi_A 147 MKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNM--------AIHMVYQNQIAELMLSE 206 (214)
T ss_dssp HHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSSSCH--------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCccHHH--------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988644321 12334445566655554
No 11
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=291.48 Aligned_cols=183 Identities=17% Similarity=0.297 Sum_probs=155.8
Q ss_pred ccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHH
Q psy3271 553 YERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILL 632 (781)
Q Consensus 553 ~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~ 632 (781)
...++||+||+++++.. .||.+|++|++||+++|+++|||||++|+..++++
T Consensus 8 ~~~~vFG~~L~~~~~~~----------------------------~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~ 59 (201)
T 3msx_B 8 MPGQLFGISLPNICEND----------------------------NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRE 59 (201)
T ss_dssp --CCCTTSCHHHHSGGG----------------------------CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHH
T ss_pred CCCCeeCCcHHHHhcCC----------------------------CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHH
Confidence 45679999999998643 38999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCC-CHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHH
Q psy3271 633 IRNWLDTGSSDPLPG-SVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLYLC 705 (781)
Q Consensus 633 lr~~ld~g~~~~~~~-dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~ 705 (781)
+++.+|+|...++.. |+|++|++||.|||+||+||+|.++|+.|+.+.+ ..+.++.++.+||+.|+.+|.||+
T Consensus 60 l~~~~~~~~~~~~~~~d~~~va~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~ 139 (201)
T 3msx_B 60 LKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLF 139 (201)
T ss_dssp HHHHHHHTCCCCTTSSCHHHHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCcccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 999999998766644 9999999999999999999999999999998765 355788999999999999999999
Q ss_pred HHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 706 SFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 706 ~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
.||++|+++++.|+|+++|||+||||+|+|++...... ......+.++.+..||++++
T Consensus 140 ~~L~~v~~~~~~NkM~~~nLa~vf~P~ll~~~~~~~~~-------~~~~~~~~~~~iv~~LI~~~ 197 (201)
T 3msx_B 140 GVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPE-------LENEFTKKVSLLIQFLIENC 197 (201)
T ss_dssp HHHHHHHTTHHHHCCCHHHHHHHHHHHHCCCCTTSCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCChhhhhhhhhccccCCCCCCChH-------HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998643322 22233344544444555544
No 12
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=292.00 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=162.0
Q ss_pred eccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHH
Q psy3271 550 TGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSE 629 (781)
Q Consensus 550 ~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~ 629 (781)
++...+++||+||+++++..+ ..||.+|++|++||+++|+++|||||++|+..+
T Consensus 13 ~~~~~~~vFGv~L~~~~~~~~--------------------------~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~ 66 (228)
T 3kuq_A 13 NLYFQGSVFGVPLTVNVQRTG--------------------------QPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSR 66 (228)
T ss_dssp -CBCTTSSTTCCHHHHHHHHS--------------------------SSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHH
T ss_pred CCCCCCCEECCchHHHHHHcC--------------------------CCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHH
Confidence 345677999999999998765 469999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHH
Q psy3271 630 ILLIRNWLDTGS-SDPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVY 701 (781)
Q Consensus 630 v~~lr~~ld~g~-~~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L 701 (781)
+++|++.+|++. ..++. .++|++|++||.|||+||+||+|+++|+.|+.+.+ ..+.++.++.+||+.|+.+|
T Consensus 67 i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L 146 (228)
T 3kuq_A 67 IQALRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVL 146 (228)
T ss_dssp HHHHHHHHTBSSSCCCCTTCCHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcCCcccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999998753 34444 38999999999999999999999999999998875 35688999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCC-----------ccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 702 LYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS-----------ARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 702 ~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~-----------~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
.||+.||++|+++++.|+|+++|||+||||+|||++....... +.......++...+.+++.+||.+-
T Consensus 147 ~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~ 225 (228)
T 3kuq_A 147 QTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAEC 225 (228)
T ss_dssp HHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccccCCchhHhHHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887542221 1122233446667777888777653
No 13
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=4.9e-34 Score=288.73 Aligned_cols=162 Identities=20% Similarity=0.339 Sum_probs=148.1
Q ss_pred ccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHH
Q psy3271 553 YERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILL 632 (781)
Q Consensus 553 ~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~ 632 (781)
...++||+||++++...+ ....||.+|++|++||+++|+++|||||++|+..++++
T Consensus 4 ~~~~vFG~~L~~~~~~~~------------------------~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~ 59 (198)
T 1tx4_A 4 LPNQQFGVSLQHLQEKNP------------------------EQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVRE 59 (198)
T ss_dssp CTTCCTTSCHHHHHHHST------------------------TCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHH
T ss_pred CCCCccCCcHHHHHhhCC------------------------CCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHH
Confidence 356899999999987654 11369999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC--CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----hHHHHHHHhhcCCHHHHHHHHHHH
Q psy3271 633 IRNWLDTGSSDPLP--GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----SYVQAKQLIASLPLCSRNVYLYLC 705 (781)
Q Consensus 633 lr~~ld~g~~~~~~--~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----~~~~~~~ll~~LP~~n~~~L~yL~ 705 (781)
|++.+|+|...++. .|+|++|++||.|||+||+||+|+++|+.++++.+ ..+.++.++.+||+.|+.+|.||+
T Consensus 60 l~~~~~~~~~~~~~~~~d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~ 139 (198)
T 1tx4_A 60 VQQKYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLT 139 (198)
T ss_dssp HHHHHHTTCCCCGGGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCccccccchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999876663 48999999999999999999999999999998654 357889999999999999999999
Q ss_pred HHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 706 SFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 706 ~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
.||++|+++++.|||+++|||+||||+|+|+++
T Consensus 140 ~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~ 172 (198)
T 1tx4_A 140 AFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172 (198)
T ss_dssp HHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHhccCCCCCCHHHHHhhhcccccCCCC
Confidence 999999999999999999999999999999874
No 14
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=293.76 Aligned_cols=185 Identities=20% Similarity=0.335 Sum_probs=157.9
Q ss_pred eccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHH
Q psy3271 550 TGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSE 629 (781)
Q Consensus 550 ~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~ 629 (781)
.+.+.+++||+||++++..+ ..||.+|.+|++||+++|+++|||||++|+..+
T Consensus 46 ~~~~~~~vFGv~L~~~~~~~---------------------------~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~ 98 (246)
T 3fk2_A 46 KATWESNYFGVPLTTVVTPE---------------------------KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSE 98 (246)
T ss_dssp ---CCCSSTTSCGGGGCCSS---------------------------SCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHH
T ss_pred ccccCCCeeCCCHHHHhcCC---------------------------CCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHH
Confidence 45778899999999998632 259999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCC---CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHH
Q psy3271 630 ILLIRNWLDTGSSDPLP---GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNV 700 (781)
Q Consensus 630 v~~lr~~ld~g~~~~~~---~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~ 700 (781)
+++|++.+|++...++. .|+|++|++||.|||+||+||+|+++|+.|+.+.+ ..+.++.++.+||+.|+.+
T Consensus 99 v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~ 178 (246)
T 3fk2_A 99 MESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEV 178 (246)
T ss_dssp HHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHH
Confidence 99999999999766653 28999999999999999999999999999998775 3567899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 701 YLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 701 L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
|.||+.||++|+++++.|+|+++|||+||||+|+|++.+... ..+.......+|+.||.+-
T Consensus 179 L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llrp~~~~~~--------~~~~~~~~~~ive~LI~~~ 239 (246)
T 3fk2_A 179 FKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMD--------ALTATRTYQTIIELFIQQC 239 (246)
T ss_dssp HHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHCCCSSSSC--------HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhccCccCCchHHhHHHhcccccCCCCccHH--------HHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999997653222 3344445556666655543
No 15
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=290.11 Aligned_cols=161 Identities=20% Similarity=0.337 Sum_probs=144.6
Q ss_pred ccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHH
Q psy3271 553 YERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILL 632 (781)
Q Consensus 553 ~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~ 632 (781)
-.+++||+||+++++..+ ..||.+|.+|++||+++|+ +|||||++|+..++++
T Consensus 17 ~~~~vFG~~L~~~~~~~~--------------------------~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~ 69 (229)
T 3iug_A 17 QGERVFGCDLGEHLLNSG--------------------------FEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQR 69 (229)
T ss_dssp -CCCSTTSCHHHHHHHHC--------------------------CSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHH
T ss_pred CCCCeECcchHHHHHhcC--------------------------CCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHH
Confidence 356899999999988765 4699999999999999999 8999999999999999
Q ss_pred HHHHHhcCCCCCCC-----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHH
Q psy3271 633 IRNWLDTGSSDPLP-----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVY 701 (781)
Q Consensus 633 lr~~ld~g~~~~~~-----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L 701 (781)
|++.+|++...++. .|+|++|++||.|||+||+||+|+++|+.|+++.+ ....++.++.+||+.|+.+|
T Consensus 70 L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L 149 (229)
T 3iug_A 70 LRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTL 149 (229)
T ss_dssp HHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999998765543 38999999999999999999999999999998875 24578899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCC
Q psy3271 702 LYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRS 740 (781)
Q Consensus 702 ~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~ 740 (781)
.||+.||++|+++++.|+|+++|||+||||+|+|++...
T Consensus 150 ~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~ 188 (229)
T 3iug_A 150 EFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIE 188 (229)
T ss_dssp HHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCccc
Confidence 999999999999999999999999999999999998643
No 16
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=9.2e-34 Score=295.31 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=149.5
Q ss_pred EeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCH
Q psy3271 548 TVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLP 627 (781)
Q Consensus 548 ~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~ 627 (781)
+.++....++||++|++++...+ ....||.+|.+|++||+++|+++|||||++|+.
T Consensus 35 ~~~~~~~~~vFG~~L~~~~~~~~------------------------~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~ 90 (242)
T 1ow3_A 35 PPRPPLPNQQFGVSLQHLQEKNP------------------------EQEPIPIVLRETVAYLQAHALTTEGIFRRSANT 90 (242)
T ss_dssp ----CCTTCCSSSCHHHHHHHST------------------------TCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCH
T ss_pred CCCCCCCCCccCCcHHHHHhhcC------------------------CCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcH
Confidence 34455667899999999987654 124699999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----hHHHHHHHhhcCCHHHHHH
Q psy3271 628 SEILLIRNWLDTGSSDPLP--GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----SYVQAKQLIASLPLCSRNV 700 (781)
Q Consensus 628 ~~v~~lr~~ld~g~~~~~~--~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----~~~~~~~ll~~LP~~n~~~ 700 (781)
.++++|++.+|+|...++. .|+|++|++||.|||+||+||+|+++|+.|+++.+ ..+.++.++.+||+.|+.+
T Consensus 91 ~~i~~L~~~~d~~~~~~~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~ 170 (242)
T 1ow3_A 91 QVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQV 170 (242)
T ss_dssp HHHHHHHHHHHTTCCCCGGGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHH
Confidence 9999999999999876663 38999999999999999999999999999998764 3578899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCC
Q psy3271 701 YLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPP 738 (781)
Q Consensus 701 L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~ 738 (781)
|.||+.||++|+++++.|+|+++|||+||||+|+|++.
T Consensus 171 L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~ 208 (242)
T 1ow3_A 171 LRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208 (242)
T ss_dssp HHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCC
Confidence 99999999999999999999999999999999999874
No 17
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=2.1e-33 Score=287.85 Aligned_cols=185 Identities=19% Similarity=0.263 Sum_probs=150.9
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
..||+||++++.... ....||.+|++|++||+++|+++|||||++|+..+ ++|++
T Consensus 6 ~~fGv~L~~l~~~~~------------------------~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~ 60 (216)
T 1pbw_A 6 EQQALTLPDLAEQFA------------------------PPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQ 60 (216)
T ss_dssp ------CCCHHHHCC------------------------TTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHH
T ss_pred ccCCCcHHHHHhccC------------------------CCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHH
Confidence 589999999998643 12469999999999999999999999999999999 99999
Q ss_pred HHhcCC-CCCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-------hHHHHHHHhh--cCCHHHHHHHHHH
Q psy3271 636 WLDTGS-SDPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-------SYVQAKQLIA--SLPLCSRNVYLYL 704 (781)
Q Consensus 636 ~ld~g~-~~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-------~~~~~~~ll~--~LP~~n~~~L~yL 704 (781)
.+|++. ..++. .|+|++|++||.|||+||+||+|+++|+.|+.+.+ ..+.++.++. +||+.|+.+|.||
T Consensus 61 ~~d~~~~~~~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L 140 (216)
T 1pbw_A 61 LLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYL 140 (216)
T ss_dssp HSCSSSSCCCGGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHcCCCCCCccccCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 999975 34443 39999999999999999999999999999999874 2457888998 9999999999999
Q ss_pred HHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcceecC
Q psy3271 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSELIAP 776 (781)
Q Consensus 705 ~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~~~~ 776 (781)
+.||++|+++++.|+|+++|||+||||+|+|++..... .. ....++|+.+|.+....|-.+
T Consensus 141 ~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~----------~~-~~~~~vve~LI~~~~~iF~~~ 201 (216)
T 1pbw_A 141 LKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD----------NT-ENLIKVIEILISTEWNERQPA 201 (216)
T ss_dssp HHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHH----------HH-HHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchh----------hh-HHHHHHHHHHHhhhHHhcCCC
Confidence 99999999999999999999999999999999864321 12 666778888777766555543
No 18
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=99.98 E-value=1.7e-32 Score=290.26 Aligned_cols=213 Identities=20% Similarity=0.274 Sum_probs=154.3
Q ss_pred EeeecC-----CceEEEeeccccccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHH
Q psy3271 537 LHLEGG-----KDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLY 611 (781)
Q Consensus 537 L~le~G-----~d~FI~v~g~~~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~ 611 (781)
+++++| ++.+.+........+||+||+++++...| ....||.+|.+|++||+
T Consensus 39 i~~k~~~~~~~~~~~~~~~~~~~~~vFGv~L~~l~~~~~~-----------------------~~~~iP~~l~~~~~~le 95 (271)
T 3eap_A 39 IKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP-----------------------EYGHIPSFLVDACTSLE 95 (271)
T ss_dssp CCC-------------------CCSSTTSCGGGSCEEEET-----------------------TTEEEEHHHHHHHHHHG
T ss_pred ccccCCCccccccccccCCCCCCCCeeCCcHHHHHhhccC-----------------------CCCCcChHHHHHHHHHH
Confidence 445555 67788888888889999999999764321 11359999999999997
Q ss_pred hccccCCCceeccCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh-----hHHHH
Q psy3271 612 RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST-----SYVQA 686 (781)
Q Consensus 612 ~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~~~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~-----~~~~~ 686 (781)
+ |+++|||||++|+..++++|++.+|+|.......++|++|++||.|||+||+||+|+++|+.|+.+.+ ....+
T Consensus 96 ~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~ 174 (271)
T 3eap_A 96 D-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAT 174 (271)
T ss_dssp G-GTTC--------CHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHH
T ss_pred h-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 6 89999999999999999999999999976544558999999999999999999999999999998875 23456
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHH
Q psy3271 687 KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFL 766 (781)
Q Consensus 687 ~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL 766 (781)
+.++..||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++....... .........+.++++.+|
T Consensus 175 ~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~----~~~~~~~~~~~~vve~LI 250 (271)
T 3eap_A 175 LLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMS----SNTEKKLRLQAAVVQTLI 250 (271)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCC----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchh----hhHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999987444331 112234445667888877
Q ss_pred hcCCcceecCC
Q psy3271 767 VNDFSELIAPV 777 (781)
Q Consensus 767 ~~~~~~~~~~~ 777 (781)
.+...-|.+|+
T Consensus 251 ~~~~~IF~vp~ 261 (271)
T 3eap_A 251 DYASDIGRVPD 261 (271)
T ss_dssp HTGGGTTCCCH
T ss_pred HhHHHHhCCCH
Confidence 77776666664
No 19
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=270.73 Aligned_cols=169 Identities=20% Similarity=0.364 Sum_probs=146.7
Q ss_pred CCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHHHHhcCCCCC-CC--CCHHHHHHHHHHHHhhCCCCCCCCCc
Q psy3271 596 SYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDP-LP--GSVHSVAESLLLLLESTAEPLIPYNM 672 (781)
Q Consensus 596 ~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~~ld~g~~~~-~~--~dvh~va~lLK~fLr~LPePLip~~~ 672 (781)
+..||.+|++|++||+++|+++|||||++|+..++++|++.+|+|.... +. .|+|++|++||.|||+||+||+|+++
T Consensus 14 ~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePLi~~~l 93 (201)
T 2ovj_A 14 SPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRL 93 (201)
T ss_dssp SSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCTTCTTT
T ss_pred CCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 3679999999999999999999999999999999999999999996433 32 39999999999999999999999999
Q ss_pred hHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCcc
Q psy3271 673 HPACLTAST------SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSAR 746 (781)
Q Consensus 673 y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~ 746 (781)
|+.|+++.+ ..+.++.++.+||++|+.+|.||+.||++|+++ +.|||+++|||+||||+|+|++.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~~~~~~~~-- 170 (201)
T 2ovj_A 94 NRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPNPDPV-- 170 (201)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCSSSSCCHH--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCCCCCCCHH--
Confidence 999999875 245788999999999999999999999999996 68999999999999999999876544331
Q ss_pred CcchhHHHHHHHHHHHHHHHhcCC
Q psy3271 747 GKSQTQTQARRKANFVYHFLVNDF 770 (781)
Q Consensus 747 ~~~q~~~~~~~~~~fv~~fL~~~~ 770 (781)
...++...+.++++.||.+..
T Consensus 171 ---~~~~~~~~~~~vv~~LI~~~~ 191 (201)
T 2ovj_A 171 ---TMLQDIKRQPKVVERLLSLPL 191 (201)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSCH
T ss_pred ---HHHHHHHHHHHHHHHHHHhHH
Confidence 244566677778887776653
No 20
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=99.97 E-value=1.6e-31 Score=276.64 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=138.5
Q ss_pred cccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHHH
Q psy3271 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRN 635 (781)
Q Consensus 556 s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr~ 635 (781)
.+||+||...+.... .-...+|.+|.+|++||+++|+++|||||++|+..+++++++
T Consensus 17 pvfgvpl~~~~~~~~-----------------------~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~ 73 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTA-----------------------QLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLS 73 (231)
T ss_dssp --------------C-----------------------CSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHH
T ss_pred CccCCcchhcccccc-----------------------ccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHH
Confidence 589999998665432 011247899999999999999999999999999999999986
Q ss_pred -HHhcCC--CCCCC----CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHH
Q psy3271 636 -WLDTGS--SDPLP----GSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYL 702 (781)
Q Consensus 636 -~ld~g~--~~~~~----~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~ 702 (781)
.+|.+. ..++. .|+|++|++||.|||+||+||+|+++|+.|+.+.+ ..+.++.++.+||++|+.+|.
T Consensus 74 ~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~ 153 (231)
T 1f7c_A 74 ILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLH 153 (231)
T ss_dssp HHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 578764 23332 48999999999999999999999999999998875 356789999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhcCCcce
Q psy3271 703 YLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSEL 773 (781)
Q Consensus 703 yL~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~~~~~~ 773 (781)
||+.||++|+++++.|||+++|||+||||+|+|++...... ..+......+++.+|.+...-|
T Consensus 154 ~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~--------~~~~~~~~~vve~LI~~~~~iF 216 (231)
T 1f7c_A 154 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAA--------IMDIKFQNIVIEILIENHEKIF 216 (231)
T ss_dssp HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSG--------GGGHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHH--------HHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988643322 1233444556666665544333
No 21
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.97 E-value=3.8e-32 Score=277.15 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=134.9
Q ss_pred cccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHH
Q psy3271 554 ERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLI 633 (781)
Q Consensus 554 ~~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~l 633 (781)
.+++||+||++++.... ....||.+|.+|+++|+++|+++|||||++|+. +
T Consensus 19 ~~~vFGv~L~~l~~~~~------------------------~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----l 69 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFS------------------------PPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----P 69 (214)
T ss_dssp ------CCCCCHHHHCC------------------------TTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----C
T ss_pred CCcccCcCHHHHHHhhC------------------------CCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----H
Confidence 45799999999998432 113599999999999999999999999999998 4
Q ss_pred HHHHhcCCCCCCC-CCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHhh---HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy3271 634 RNWLDTGSSDPLP-GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTS---YVQAKQLIASLPLCSRNVYLYLCSFLQ 709 (781)
Q Consensus 634 r~~ld~g~~~~~~-~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~~---~~~~~~ll~~LP~~n~~~L~yL~~fL~ 709 (781)
|+ .+...++. .|+|++|++||.|||+||+||+|+++|+.|+++.+. .+.+..++.+||+.|+.+|.||+.||+
T Consensus 70 r~---~~~~~dl~~~dvh~va~lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~ 146 (214)
T 2xs6_A 70 RT---DWSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLG 146 (214)
T ss_dssp CC---CCCCTTGGGCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHH
T ss_pred Hh---ccccCCCccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 43 22223332 389999999999999999999999999999998763 223447889999999999999999999
Q ss_pred HHHHhhcccCCChhhhhHhhccccccCCCCCCCCC-ccCcchhHHHHHHHHHHHHHHHhcC
Q psy3271 710 ELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS-ARGKSQTQTQARRKANFVYHFLVND 769 (781)
Q Consensus 710 ~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~-~~~~~q~~~~~~~~~~fv~~fL~~~ 769 (781)
+|+++++.|||+++|||+||||+|+|++.+..... +........+.....++|+.+|.+.
T Consensus 147 ~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n~ 207 (214)
T 2xs6_A 147 RVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEH 207 (214)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHC------------------CCTTHHHHHHHHHHHHH
T ss_pred HHHHcccccCCCHHHHHHHHhhhhcCCcccccccccccchhhhHHhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999987532100 0000012223445567787777554
No 22
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.97 E-value=3.6e-30 Score=292.78 Aligned_cols=181 Identities=19% Similarity=0.360 Sum_probs=156.5
Q ss_pred ccccccchhhhhhccCccccccchhhhhhccccCCCCCCCCCCCCcHHHHHHHHHHHhccccCCCceeccCCHHHHHHHH
Q psy3271 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634 (781)
Q Consensus 555 ~s~FG~sLe~L~~~~~pi~~~~~~~~~~l~~~~~~~~~~~~~~~IP~~l~~~i~~L~~~Gl~~eGIFR~~G~~~~v~~lr 634 (781)
..+||++|++++...+ ..||.+|.+|+++|+++|+++|||||++|+..++++|+
T Consensus 267 ~~vFG~~L~~~~~~~~--------------------------~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~ 320 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHT--------------------------TKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVK 320 (463)
T ss_dssp CCCTTSCHHHHHHHHT--------------------------CSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHH
T ss_pred ccccccccchhhhccC--------------------------CCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHH
Confidence 5799999999998654 46999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCCC----CCCHHHHHHHHHHHHhhCCCCCCCCCchHHHHHHHh------hHHHHHHHhhcCCHHHHHHHHH
Q psy3271 635 NWLDTGS-SDPL----PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAST------SYVQAKQLIASLPLCSRNVYLY 703 (781)
Q Consensus 635 ~~ld~g~-~~~~----~~dvh~va~lLK~fLr~LPePLip~~~y~~~~~~~~------~~~~~~~ll~~LP~~n~~~L~y 703 (781)
+.+|++. ..++ ..|+|++|++||.|||+||+||||+++|+.|+++.+ ..+.++.++.+||++|+.+|.|
T Consensus 321 ~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~ 400 (463)
T 3cxl_A 321 MAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRY 400 (463)
T ss_dssp HHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999853 2333 248999999999999999999999999999999875 2567889999999999999999
Q ss_pred HHHHHHHHHHhhcccCCChhhhhHhhccccccCCCCCCCCCccCcchhHHHHHHHHHHHHHHHhc
Q psy3271 704 LCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVN 768 (781)
Q Consensus 704 L~~fL~~V~~~s~~NkM~~~nLA~vfaP~Llr~~~~~~~~~~~~~~q~~~~~~~~~~fv~~fL~~ 768 (781)
|+.||++|+++++.|+|+++|||+||||+|++++...... ..++......+++.||.+
T Consensus 401 L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~-------~~~~~~~~~~vve~LI~~ 458 (463)
T 3cxl_A 401 LMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMA-------ALNDIRYQRLVVELLIKN 458 (463)
T ss_dssp HHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSCTTG-------GGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCccHHH-------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998754432 233445555666666554
No 23
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.72 E-value=6.2e-18 Score=180.18 Aligned_cols=161 Identities=35% Similarity=0.585 Sum_probs=127.5
Q ss_pred cCCeeEEeeeeccCCCCCCCCCccccccCCCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhh
Q psy3271 300 GDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICL 379 (781)
Q Consensus 300 ~~~~~~~~gt~nv~g~~~~~~l~~wl~~~~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~ 379 (781)
..++++++|||||||..|..+|.+||.+...+||||+|||||++++++++++.+...++.|...+.+.|+++.+|..+.+
T Consensus 5 ~~~~~i~v~TwNvng~~~~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s 84 (313)
T 3mtc_A 5 IQNFRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKL 84 (313)
T ss_dssp EEEEEEEEEEEECTTCCCCSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred eeccEEEEEEEEcCCccCchhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEE
Confidence 35678999999999999999999999987788999999999999999999998888999999999999999889999999
Q ss_pred heeccceeeeeeccCCC---------------ccccCCc-ceEEEEEe------------eeeecCHHHHHHHHHHHHHH
Q psy3271 380 VRLVGIRQQVDYKSVPS---------------LKISDHK-PVMSLFNS------------DIRVIDAVRYRKVHEEVMKK 431 (781)
Q Consensus 380 ~~l~g~~~~~~y~s~~~---------------~~~SDHk-PV~a~f~~------------~~~~v~~~~~~~~~~e~~~~ 431 (781)
.||+|++++++.+.... ....-.| .|.+.|.+ ....-+.++|++.+.+|++.
T Consensus 85 ~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~ 164 (313)
T 3mtc_A 85 IRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSR 164 (313)
T ss_dssp EEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred echhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHHHHHHHHHHHHHHh
Confidence 99999998876554211 1222334 56666654 22333567899999999999
Q ss_pred hhhhc-cccCCceeecCC--ceeeceeeeece
Q psy3271 432 LDKLE-NEFLPQVMVDNT--EVVFDTLRFLEA 460 (781)
Q Consensus 432 ~~~~e-~~~~p~v~i~~~--~v~fg~v~~~~~ 460 (781)
+.... ....|..++.++ .+||||+|||-.
T Consensus 165 l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 165 MQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp CCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred cccCCCCCccCCccccCCceEEEecccccccc
Confidence 87532 223455556444 589999999984
No 24
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.55 E-value=1.7e-15 Score=161.86 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=105.8
Q ss_pred cCCeeEEeeeeccCCCCCCCCCccccccC-----------CCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcC
Q psy3271 300 GDGIQVFIGTWNVNGQSPSCDLSDWLTTT-----------VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSL 368 (781)
Q Consensus 300 ~~~~~~~~gt~nv~g~~~~~~l~~wl~~~-----------~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l 368 (781)
...++||+|||||||+.|..+|++||.+. ..|||||+|||||+.. .++.|.+.+.++|
T Consensus 5 ~~~i~i~vgTwNv~g~~p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~-----------~~~~W~~~i~~~L 73 (316)
T 4a9c_A 5 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-----------GDREWLDLLRGGL 73 (316)
T ss_dssp -CEEEEEEEEEECTTSCCCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS-----------CHHHHHHHHHHHH
T ss_pred CCeEEEEEEEeEcCCcCCCcchhHhhcccccccCcccccccCCCcEEEEecccccc-----------chhHHHHHHHHHh
Confidence 34678999999999999999999999874 2468999999999742 4689999999998
Q ss_pred CCC--cchhhhhhheeccceeeeeeccCCCc---------------cccCCc-ceEEEEEe------------eeeecCH
Q psy3271 369 HPG--AAYQKICLVRLVGIRQQVDYKSVPSL---------------KISDHK-PVMSLFNS------------DIRVIDA 418 (781)
Q Consensus 369 ~~~--~~y~~~~~~~l~g~~~~~~y~s~~~~---------------~~SDHk-PV~a~f~~------------~~~~v~~ 418 (781)
++. .+|..+.+.||+|+.+.++.+....- ...-.| .|.+.|.+ ....-+.
T Consensus 74 ~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~~ 153 (316)
T 4a9c_A 74 KELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKT 153 (316)
T ss_dssp HHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTCH
T ss_pred ccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchHH
Confidence 873 47999999999999988876642111 112233 45545544 2333467
Q ss_pred HHHHHHHHHHHHHhhhhcccc-CCcee-ecCCceeeceeeeece
Q psy3271 419 VRYRKVHEEVMKKLDKLENEF-LPQVM-VDNTEVVFDTLRFLEA 460 (781)
Q Consensus 419 ~~~~~~~~e~~~~~~~~e~~~-~p~v~-i~~~~v~fg~v~~~~~ 460 (781)
++|++.+.+|++.+..-.... ..+++ ..++.+||||+|||-.
T Consensus 154 ~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~ 197 (316)
T 4a9c_A 154 ARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD 197 (316)
T ss_dssp HHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcC
Confidence 899999999999886432110 11111 1346789999999975
No 25
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.47 E-value=3.1e-14 Score=155.12 Aligned_cols=168 Identities=21% Similarity=0.361 Sum_probs=117.8
Q ss_pred CCcCCcccccceeccCCeeEEeeeeccCCCCCCCCCccccccCC-CCCcceecccccc-ccchhhhhcccchhhHHHHHh
Q psy3271 286 KNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSDWLTTTV-DPPHIYAIGFQEL-DLSKEAFLFNETLKEDEWLRA 363 (781)
Q Consensus 286 k~R~PswcDRIL~~~~~~~~~~gt~nv~g~~~~~~l~~wl~~~~-~~~diy~iG~qE~-~~~~~~~l~~~~~~~~~w~~~ 363 (781)
++|.+.|| ....+.+++|||||+|..|..+|.+||.+.. .+||||+|||||+ +++++.++..+....+.|...
T Consensus 13 ~~r~~e~~-----~~~~~~i~v~TwNv~g~~~~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~ 87 (347)
T 1i9z_A 13 RKRENEFS-----EHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESC 87 (347)
T ss_dssp HHTGGGTE-----EEEEEEEEEEEEECTTCCCCSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHH
T ss_pred HHHHHhcC-----CCCCcEEEEEeEecCCCCCchhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHH
Confidence 35566666 3467889999999999999889999998753 6799999999999 789988888777888999999
Q ss_pred hhhcCC----CCcchhhhhhheeccceeeeeeccCCCccc---------------cCCc-ceEEEEEee---e-------
Q psy3271 364 VTKSLH----PGAAYQKICLVRLVGIRQQVDYKSVPSLKI---------------SDHK-PVMSLFNSD---I------- 413 (781)
Q Consensus 364 ~~~~l~----~~~~y~~~~~~~l~g~~~~~~y~s~~~~~~---------------SDHk-PV~a~f~~~---~------- 413 (781)
+.+.|+ .+..|..+.+.+++|+.++++.+....-.+ .-.| .|.+.|.+. +
T Consensus 88 i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HL 167 (347)
T 1i9z_A 88 VKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHL 167 (347)
T ss_dssp HHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecC
Confidence 988887 356899999999999988775543221111 1122 355555542 2
Q ss_pred --eecCHHHHHHHHHHHHHHhhhhccccCCceeecCCceeeceeeeecee
Q psy3271 414 --RVIDAVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQ 461 (781)
Q Consensus 414 --~~v~~~~~~~~~~e~~~~~~~~e~~~~p~v~i~~~~v~fg~v~~~~~~ 461 (781)
...+.++|++.+.+|.+.+....+.. +.-..+.||+||+||+...
T Consensus 168 aa~~~~~~~R~~d~~~I~~~l~f~~~~~---i~~~d~v~~~GDlNyRi~~ 214 (347)
T 1i9z_A 168 AAGYTNYDERDHDYRTIASGLRFRRGRS---IFNHDYVVWFGDFNYRISL 214 (347)
T ss_dssp CCCSSCHHHHHHHHHHHHHHCCCGGGCC---TTSSSEEEEEEECCCCBSS
T ss_pred CCCCccHHHHHHHHHHHHHhhccCcccc---cccCccEEEecccccccCC
Confidence 22245678899999998886543322 1123457899999998753
No 26
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.44 E-value=2e-12 Score=132.63 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=52.1
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
...++.+.+.+...+..+.++|+||.++....+.|.++...+.+.+.-. .....++++||||.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~--------~~~~pvIl~GDfN~~~~ 164 (256)
T 4gz1_A 99 KMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEA--------PDSTTVIFAGDTNLRDQ 164 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS--------CTTSEEEEEEECCCCHH
T ss_pred cccceEEEEEEEeCCEEEEEEeecccccccchhhhhHHHHHHhhhhhhc--------cCcceEEEeCccCCCcc
Confidence 4557788889999999999999999999888888888888887765421 23457999999997543
No 27
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.35 E-value=4.2e-12 Score=130.35 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=48.8
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
+.++.+.+.+.+.+..+.++|+||.+.......|..++..+...+.... .......++++||||.+..
T Consensus 104 ~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~-----~~~~~~~vIl~GDfN~~~~ 171 (256)
T 4fva_A 104 MYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREII-----AQNPGALVFFGGDLNLRDE 171 (256)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHH-----HHSTTCEEEEEEECCCCGG
T ss_pred ccceeEEEEEEeCCeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhh-----hccCCCcEEEeccCCCCcc
Confidence 4567788889999999999999999988777777766666554332110 0123457999999997654
No 28
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.33 E-value=9.5e-12 Score=125.87 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=49.7
Q ss_pred cCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcc
Q psy3271 152 NKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRI 222 (781)
Q Consensus 152 nKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi 222 (781)
..+.+.+.+.+.+..+.++|+||.+.....+.|.+++..|++.+.-. .....++++||||...
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~--------~~~~pvIl~GDfN~~~ 157 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEA--------PEDAIVIFAGDTNLRD 157 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS--------CTTEEEEEEEECCCCH
T ss_pred cceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHHHhc--------CCCCCEEEEEecCCCC
Confidence 35667788889999999999999999888888888888887765411 2335799999999643
No 29
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.33 E-value=1.4e-11 Score=127.86 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=50.2
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRI 222 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi 222 (781)
+..++++.+++.+.+..++++|+||.+.....+.|.++...|.+.+. ....++++||||-..
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~-----------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQ-----------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSC-----------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHHHh-----------cCCcEEEEeECCCCC
Confidence 35688999999999999999999999886555667788888865442 156899999999876
No 30
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.28 E-value=1.5e-11 Score=135.32 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=49.5
Q ss_pred cCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 152 NKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 152 nKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+++.+++.+.+..++++|+||.+.......|...+..+...+.-.. .......++++||||-+-.
T Consensus 211 ~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~-----~~~~~~pvIl~GDFN~~p~ 277 (362)
T 4gew_A 211 YRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREII-----AQNPGALVFFGGDLNLRDE 277 (362)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHH-----HHCTTCEEEEEEECCCCGG
T ss_pred cceEEEEEEEECCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhh-----hcCCCCCeEEeecCCCCCc
Confidence 357788889999999999999999988888888888777655432110 0113357999999997654
No 31
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=127.78 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=101.5
Q ss_pred CCeeEEeeeeccCCC-CCCCCCccccccC--CCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhh
Q psy3271 301 DGIQVFIGTWNVNGQ-SPSCDLSDWLTTT--VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKI 377 (781)
Q Consensus 301 ~~~~~~~gt~nv~g~-~~~~~l~~wl~~~--~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~ 377 (781)
..+++++|||||||. .+..+|++||.+. ..+||||+|||||+... ...|...+.+.|.+ .|..+
T Consensus 24 ~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~-----------~~~W~~~l~~~L~~--~Y~~v 90 (357)
T 2xsw_A 24 RNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD-----------RREWETRLQETLGP--HYVLL 90 (357)
T ss_dssp CEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC-----------HHHHHHHHHHHHCT--TEEEE
T ss_pred CCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch-----------HHHHHHHHHHHhCC--cccch
Confidence 467899999999986 4578999999753 34689999999999632 46899988888865 68888
Q ss_pred hhheeccceeeeeeccCCCccccCCc----------------ceEEEEEe------------eeeecCHHHHHHHHHHHH
Q psy3271 378 CLVRLVGIRQQVDYKSVPSLKISDHK----------------PVMSLFNS------------DIRVIDAVRYRKVHEEVM 429 (781)
Q Consensus 378 ~~~~l~g~~~~~~y~s~~~~~~SDHk----------------PV~a~f~~------------~~~~v~~~~~~~~~~e~~ 429 (781)
.+.+++|+.++++-+....-.+++-. .|.+.|.+ ....-+.++|++.+.+|+
T Consensus 91 ~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~ 170 (357)
T 2xsw_A 91 SSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTV 170 (357)
T ss_dssp EEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHH
T ss_pred hhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCchHHHHHHHHHHHH
Confidence 99999998877765542222223322 24444443 222235678999999999
Q ss_pred HHhhhhccc--cCC------ce-eecCCceeeceeeeecee
Q psy3271 430 KKLDKLENE--FLP------QV-MVDNTEVVFDTLRFLEAQ 461 (781)
Q Consensus 430 ~~~~~~e~~--~~p------~v-~i~~~~v~fg~v~~~~~~ 461 (781)
+.+....+. ..| ++ ...++.|||||+|||...
T Consensus 171 ~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 171 QALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp HHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred HHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 988643211 001 11 123567899999998864
No 32
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.09 E-value=2.3e-10 Score=118.79 Aligned_cols=66 Identities=12% Similarity=0.269 Sum_probs=47.4
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcc-----hHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTE-----EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..++.+.+++.+.+..++++|+||.+... ..+.|.+.+..|...+.-. ......++++||||-..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-------~~~~~~~Il~GDFN~~~~ 157 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE-------LKRDNPVLIMGDMNISPT 157 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH-------CCTTSCEEEEEECCCCCS
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh-------hhCCCCEEEEeECCCCCc
Confidence 45788899999988899999999987753 3455666666665443310 013467999999997765
No 33
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.03 E-value=4.8e-09 Score=108.51 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=45.3
Q ss_pred cccCceEEEEEEec--CeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 150 LGNKGGVAIRLDLH--TTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 150 ~gnKG~v~i~~~~~--~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
...++++.+++... +..+.++|+||.+... +.|.++...|.+.+.-. +.. +.++++||||-..+
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~--~~r~~q~~~l~~~i~~~-------~~~-~pvil~GDfN~~~~ 172 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHISA--HARLAGMTVILEELHDK-------IAQ-YPTLLMGDFNAESG 172 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSCH--HHHHHHHHHHHHHTHHH-------HHH-SCEEEEEECCCCTT
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCCH--HHHHHHHHHHHHHHHHH-------cCC-CCEEEEeeCCCCCC
Confidence 34678888888874 6789999999988643 56777777776655310 011 27999999997554
No 34
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.00 E-value=8.4e-10 Score=118.89 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=52.6
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCc------chHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHT------EEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+||.+.+++.+.+..+.++|+||.+.. .....|.++...|.+.+.-. .+.....++++||||-...
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------~~~~~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK------NIPKDETVYIGGDLNVNKG 220 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH------TCCTTSCEEEEEECCCCTT
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh------ccCCCCeEEEEeECCCCCC
Confidence 57899999999999999999999998875 24677888887776654311 0123457999999998876
Q ss_pred C
Q psy3271 224 D 224 (781)
Q Consensus 224 ~ 224 (781)
+
T Consensus 221 s 221 (317)
T 3i41_A 221 T 221 (317)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.99 E-value=1.5e-09 Score=115.13 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=50.7
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCc------chHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHT------EEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..++|++.+++.+.+..+.++|+||.+.. .....|.++...|.+.+.-. .......++++||||-..+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------~~~~~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK------NIPKDEIIFIGGDLNVNYG 201 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH------TCCTTSEEEEEEECCCCTT
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh------CCCCCCeEEEEeeCCCCCC
Confidence 35789999999999999999999999874 24566777777776544310 0123468999999998876
No 36
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.95 E-value=3.5e-09 Score=110.32 Aligned_cols=63 Identities=19% Similarity=0.056 Sum_probs=43.4
Q ss_pred ccCceEEEEEEe--cCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 151 GNKGGVAIRLDL--HTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 151 gnKG~v~i~~~~--~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
.+++++.+.+.. .+..++++|+||.+.. ...|.+....|.+.+.- +.....++++||||-..+
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~l~~--------~~~~~pvIl~GDfN~~~~ 178 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG--EEARRQSALLIIRKIKE--------IVGERPAVVTGDFNVTDA 178 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHH--------HTTTSCEEEEEECSSCTT
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHHH--------hcCCCCEEEEeECCCCCC
Confidence 467788888884 5789999999998754 34566665555554431 112357999999997554
No 37
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.85 E-value=9.2e-09 Score=109.11 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=49.1
Q ss_pred cccCceEEEEEEecCeEEEEEEecCCCCc------chHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcc
Q psy3271 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHT------EEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRI 222 (781)
Q Consensus 150 ~gnKG~v~i~~~~~~~~~~fvn~HL~a~~------~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi 222 (781)
...+|++.+++.+.+..+.++|+||.+.. .....|.+++..|.+.+.-. .......++++||||-..
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------~~~~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK------NIPNNEYVLIGGDMNVNK 200 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH------TCCTTSCEEEEEECCCCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh------cCCCCCEEEEEeeCCCCc
Confidence 35789999999999999999999999874 24566777777775544310 011235799999999876
No 38
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=4.2e-09 Score=95.62 Aligned_cols=101 Identities=13% Similarity=0.199 Sum_probs=78.5
Q ss_pred CCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEEchh
Q psy3271 440 LPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKR 519 (781)
Q Consensus 440 ~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~vd~~ 519 (781)
-|.++++...++||++.+.+..+++++|+|+|.+|+.|++++ + ...|..+++++|.+|.|.||++.+|+++..- +
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~--~-~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~--~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTP--P-TSALGACFVFSPKEGIIEPSGVQAIQISFSS--I 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECC--C-SSHHHHHCEEESSEEEECTTBCCEEEEEECC--C
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEec--C-CccccCcEEEECCcCEECCCCEEEEEEEEEC--C
Confidence 488999999999999999999999999999999999999954 1 2233346999999999999999999888654 2
Q ss_pred hhhhhccccccccceEEEeeecC-CceEEEeecc
Q psy3271 520 CASKMNSGQDKIYDILVLHLEGG-KDLFITVTGS 552 (781)
Q Consensus 520 ~a~~ln~g~~~l~diLvL~le~G-~d~FI~v~g~ 552 (781)
.. ...++.+.+.+++. ....+.++|.
T Consensus 82 ~~-------g~f~~~i~v~~~g~~~~~~L~i~G~ 108 (112)
T 2e6j_A 82 IL-------GNFEEEFLVNVNGSPEPVKLTIRGC 108 (112)
T ss_dssp CC-------EEEEEEECEEESSCSSCCCEEEEEE
T ss_pred Cc-------ceEEEEEEEEECCCCceEEEEEEEE
Confidence 11 23455566677764 3356777664
No 39
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=1.2e-08 Score=108.47 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=44.2
Q ss_pred ccCceEEEEEE--ecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 151 GNKGGVAIRLD--LHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 151 gnKG~v~i~~~--~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
-+++++.+.|. ..+..++++|+||.+.. ...|.++...|...+.-... .....++++||||-...
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i~~~~~------~~~~pvIl~GDfN~~~~ 184 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG--KKARVESAFLVQEKMKELGR------GKNLPAILTGDFNVDQT 184 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHHTTT------TSCCCEEEEEECSSCTT
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC--HHHHHHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCC
Confidence 35778888887 46789999999998543 35666676666655431100 02357999999997654
No 40
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.80 E-value=4.8e-09 Score=107.93 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred EEEEEEecCCCCcc----hHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 166 SLCFVNSHLAAHTE----EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 166 ~~~fvn~HL~a~~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
.+.++|+|+.+... ..+.|.+.+..+...+.-. +.....++++||||-..+
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~-------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDE-------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHH-------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHH-------hcCCCCEEEEeECCCCCc
Confidence 69999999988754 3445655555544332200 013457999999998765
No 41
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=98.71 E-value=1.2e-09 Score=115.83 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCeeEEeeeeccCCCCCCCCCccccccC-CCCCcceeccccccccchhhhhcccchhhHHHHHhhhhcCCCCcchhhhhh
Q psy3271 301 DGIQVFIGTWNVNGQSPSCDLSDWLTTT-VDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICL 379 (781)
Q Consensus 301 ~~~~~~~gt~nv~g~~~~~~l~~wl~~~-~~~~diy~iG~qE~~~~~~~~l~~~~~~~~~w~~~~~~~l~~~~~y~~~~~ 379 (781)
.+++++++||||++..+..++.+|+... ..+||||+|||||++.++... .....|.+.+.+.|. ...|..+.+
T Consensus 5 ~~~~i~V~T~Nv~~~~~~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~-----~~~~~w~~~l~~~L~-~~~Y~~v~~ 78 (282)
T 2imq_X 5 AQLSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKP-----QQGPACVKNFQSLLT-SKGYTKLKN 78 (282)
T ss_dssp SEEEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTT-----CCHHHHHHHHHHHHH-HTTEEEEEE
T ss_pred CCcEEEEEEEeCCCCcCchhHHHHhcccccCCCCEEEEEeeeeccccccc-----hhhHHHHHHHHHhcC-CCceEEEEe
Confidence 3567899999999888888999999754 357899999999998664331 346789888887775 336877777
Q ss_pred --heeccceeeeeecc
Q psy3271 380 --VRLVGIRQQVDYKS 393 (781)
Q Consensus 380 --~~l~g~~~~~~y~s 393 (781)
.+++|+...++|+.
T Consensus 79 ~~~~~~G~~l~vf~k~ 94 (282)
T 2imq_X 79 TITETMGLTVYCLEKH 94 (282)
T ss_dssp EECSSEEEEEEEEGGG
T ss_pred ccCceeEEEEEEEEcc
Confidence 78899888887664
No 42
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.64 E-value=2.2e-07 Score=94.10 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=37.0
Q ss_pred eEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 155 GVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 155 ~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
.+.+++.+.+..+.++|+|+.+.... +. +..+.+.+.-. ....++++||||-..+
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~~--~~---~~~l~~~l~~~---------~~~~~Il~GDFN~~~~ 151 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGAP--RF---IKQVLSDLQRD---------LDSHTLIMGDFNTPLS 151 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSHH--HH---HHHHHHHTTTT---------CCTTEEEEEECSSCSS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCcH--HH---HHHHHHHHHhc---------cCCCEEEEccCCCCCC
Confidence 56677778889999999999876542 21 23344443310 1357999999998554
No 43
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.57 E-value=5.4e-08 Score=100.19 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.3
Q ss_pred EEEEEeecCCCCCC-C-CchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 3 VFIGTWNVNGQSPS-C-DLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 3 i~v~TwNv~~~~p~-~-~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
+.|+||||++.... . .+.+++.. ..||| |||||+...
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~ 40 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQ 40 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecch
Confidence 67999999975322 2 47778865 46999 999999643
No 44
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.57 E-value=2.9e-07 Score=94.62 Aligned_cols=59 Identities=10% Similarity=0.210 Sum_probs=41.8
Q ss_pred ccCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCcc
Q psy3271 151 GNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRI 222 (781)
Q Consensus 151 gnKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi 222 (781)
...|++.+.+...+..+.++|+|+..+.. .+.+.+.+..+++.+ ....++++||||-..
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~~~~~l~~~~~~~------------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP-IESYLEQIKRVERKM------------GPKRLIFGGDANAKS 159 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC-SHHHHHHHHHHHHTT------------CSSSEEEEEECCCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHHHHHHHHHHHHHh------------CCCcEEEEeccccCc
Confidence 35678888888888899999999987753 233444555555422 224799999999654
No 45
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.52 E-value=2.6e-07 Score=96.97 Aligned_cols=38 Identities=32% Similarity=0.578 Sum_probs=27.5
Q ss_pred EEEEEEeecCCCCCC--CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 2 QVFIGTWNVNGQSPS--CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~--~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
.+.|+||||++.... ..+.++|.. ..||| |||||+...
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~ 67 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCS 67 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh--cCCCE--EEEEEeecc
Confidence 378999999875322 237777764 45998 999999643
No 46
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.52 E-value=5.5e-07 Score=92.63 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=27.0
Q ss_pred EEEEEeecCCCCCC-CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 3 VFIGTWNVNGQSPS-CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 3 i~v~TwNv~~~~p~-~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
+.|+||||++.... +.+.+++.. ..||| |||||+...
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~~ 39 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKVE 39 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeecc
Confidence 67999999975433 356667754 35999 999999643
No 47
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=3.3e-07 Score=84.59 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=78.8
Q ss_pred CCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEEchh
Q psy3271 440 LPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKR 519 (781)
Q Consensus 440 ~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~vd~~ 519 (781)
.|.+.+ +..++||.+.......+++.|+|+|..++.|++... +-.+|+|..|.|.||++++|+++.. +.
T Consensus 23 ~~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--------~~F~i~P~~g~L~pg~~~~i~V~F~--P~ 91 (122)
T 2ys4_A 23 RAILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--------RPFSIEPAIGTLNVGESMQLEVEFE--PQ 91 (122)
T ss_dssp CCCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--------TTEEEESSEEEECTTCEEEEEEEEC--CS
T ss_pred CcEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--------CCeEEECCcCEECCCCEEEEEEEEE--cC
Confidence 455555 457999999999999999999999999999998742 3489999999999999999988854 33
Q ss_pred hhhhhccccccccceEEEeeecCCceEEEeeccc
Q psy3271 520 CASKMNSGQDKIYDILVLHLEGGKDLFITVTGSY 553 (781)
Q Consensus 520 ~a~~ln~g~~~l~diLvL~le~G~d~FI~v~g~~ 553 (781)
. ....+..|++++++|.++.+++.|.-
T Consensus 92 ~-------~g~~~~~l~v~~~~g~~~~v~L~G~~ 118 (122)
T 2ys4_A 92 S-------VGDHSGRLIVCYDTGEKVFVSLYGAA 118 (122)
T ss_dssp S-------SBCCCCBCEEEESSSCEECCEECCCE
T ss_pred C-------CccEEEEEEEEECCCCEEEEEEEEEE
Confidence 2 23456778899999999999998854
No 48
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.44 E-value=3.1e-07 Score=98.62 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=27.3
Q ss_pred EEEEEEeecCCCCCC--CCchhhhcCCCCCCcEEEEeccccCC
Q psy3271 2 QVFIGTWNVNGQSPS--CDLSDWLTTTVDPPHIYAIGFQELDL 42 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~--~~l~~wl~~~~~~~Di~vig~QE~~~ 42 (781)
.+.|+||||++.... ..+.+||.. ..||| |||||+..
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~ 99 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKC 99 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccC
Confidence 378999999975422 247778765 45999 99999954
No 49
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.38 E-value=9.2e-07 Score=100.05 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=27.8
Q ss_pred EEEEEEeecCCCCCC-----CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 2 QVFIGTWNVNGQSPS-----CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~-----~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
.+.|+||||++.... +.+.+||.. ..||| |||||+...
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pDI--VcLQEtk~~ 191 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPDV--LCLQETKLN 191 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCSE--EEEECCCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCCE--EEEEecccc
Confidence 378999999974311 347778865 35998 999999643
No 50
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.35 E-value=8.4e-07 Score=92.17 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=28.6
Q ss_pred EEEEEEeecCCCCCC--CCchhhhcCCCCCCcEEEEeccccCCC
Q psy3271 2 QVFIGTWNVNGQSPS--CDLSDWLTTTVDPPHIYAIGFQELDLS 43 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~--~~l~~wl~~~~~~~Di~vig~QE~~~~ 43 (781)
.+.|+||||++.... ..+.+|+.. ..||| |+|||....
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~~ 42 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKAA 42 (265)
T ss_dssp EEEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCSC
T ss_pred ccEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEecccc
Confidence 478999999985432 257888865 35999 999999644
No 51
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.61 E-value=1.1e-05 Score=96.34 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred cCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcC-CCCC---CCCCCCCcceeEecccCCcccC
Q psy3271 163 HTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFT-GFLP---PKSIKDHDQIYWLGDLNYRITD 224 (781)
Q Consensus 163 ~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~-~~~~---~~~i~~~d~~f~~GDlNyRi~~ 224 (781)
.+..++++|+||.++......|......+++.+.-- .... ...-.....+++|||||-..++
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 356899999999887544444555544444433210 0000 0000123479999999976653
No 52
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.58 E-value=3.7e-05 Score=79.66 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred CceEEEEEEec---CeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 153 KGGVAIRLDLH---TTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 153 KG~v~i~~~~~---~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
.....+.|... +..|.++|+||.+.... ++.+...+++..+.- ......++++||||-...
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~--~q~~~l~~~~~~~~~--------~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDAV--AEINSLYDVYLDVQQ--------KWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGHH--HHHHHHHHHHHHHHH--------HHCCCCEEEEEECCCSTT
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCcH--HHHHHHHHHHHHHHH--------hCCCCCEEEEecCCCCCc
Confidence 44566677655 56899999999965432 122233333332210 012357999999997654
No 53
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.52 E-value=6.4e-05 Score=77.41 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=27.9
Q ss_pred EEEEEEeecCCCCCC-CCchhhhcCCCCCCcEEEEecccc
Q psy3271 2 QVFIGTWNVNGQSPS-CDLSDWLTTTVDPPHIYAIGFQEL 40 (781)
Q Consensus 2 ~i~v~TwNv~~~~p~-~~l~~wl~~~~~~~Di~vig~QE~ 40 (781)
.+.|.|||||+.... ..+.+|+.. ..||| +|+||.
T Consensus 7 ~mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecc
Confidence 368999999987543 458889976 45999 899998
No 54
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=97.41 E-value=0.00023 Score=78.75 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=42.8
Q ss_pred eEEEEEEecCCCCcchHHHHHhhHHHHHHhcC-cCCCC-----CCCCCCCCcceeEecccCCcccCCCHHHHHHHHhcCC
Q psy3271 165 TSLCFVNSHLAAHTEEFERRNQDFHDIDSRIA-FTGFL-----PPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGK 238 (781)
Q Consensus 165 ~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~-f~~~~-----~~~~i~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~ 238 (781)
..++++|.||..+......|..+...|++.+. +.... +...-...-.+|+|||||-..+ ..+-+++..|.
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~----s~vy~~L~~G~ 270 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD----SGVVEYLSNGG 270 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTT----SHHHHHHHHTE
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCC----CHHHHHHhcCC
Confidence 46999999999987666777777777766543 11000 0000012347999999997765 34555665543
No 55
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.77 E-value=0.0023 Score=64.81 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=75.7
Q ss_pred ceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEEEchhhh
Q psy3271 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKRCA 521 (781)
Q Consensus 442 ~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~vd~~~a 521 (781)
.+.+++..++||++.=.+.....+++.|+|..|..++++.- |+|+++++..+.|.||++.+|.++..- ...
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-------p~~~~~~~~~~~I~PG~~g~I~vt~~~--~~~ 72 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-------PSFVSLDDRAFRLQAREPRELNLSLAV--PRN 72 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-------CTTEECSCCEEEECSSSCEEEEEEECC--CTT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-------CCceEeeeCcceeCCCCceEEEEEEcc--hhc
Confidence 36778899999999999999999999999999999998741 578999999999999999888888643 211
Q ss_pred hhhccccccccceEEEeee---cCC--ceEEEeecccccc
Q psy3271 522 SKMNSGQDKIYDILVLHLE---GGK--DLFITVTGSYERS 556 (781)
Q Consensus 522 ~~ln~g~~~l~diLvL~le---~G~--d~FI~v~g~~~~s 556 (781)
.. .....+.+.|... +++ ..=|.++|.-.+.
T Consensus 73 ~~----~G~~~~~i~v~~~~~~~~~~~~~~i~v~g~v~p~ 108 (220)
T 2qsv_A 73 MP----PGMKDEPLVLEVTSPETGKKAVDSVMVSLPLVDN 108 (220)
T ss_dssp CC----SEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCC
T ss_pred cc----CCceeeEEEEEEEcCCCCcccccEEEEEEEEccc
Confidence 11 1223455666664 345 3356666655543
No 56
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=96.73 E-value=0.0017 Score=67.30 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=27.1
Q ss_pred EEEEEeecCCCCCCC------CchhhhcCCCCCCcEEEEeccccCC
Q psy3271 3 VFIGTWNVNGQSPSC------DLSDWLTTTVDPPHIYAIGFQELDL 42 (781)
Q Consensus 3 i~v~TwNv~~~~p~~------~l~~wl~~~~~~~Di~vig~QE~~~ 42 (781)
+.|+|||+-+..... .+..||... ..+|| +.+||++-
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~-~~~DI--laLQEa~~ 47 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGE-QGADI--LMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCST-TCCSE--EEEESCCS
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCC-CCCCE--EEEecCCC
Confidence 468999999965532 356677652 46999 89999963
No 57
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.69 E-value=0.0042 Score=62.94 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=60.5
Q ss_pred ccCCceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 438 EFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 438 ~~~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
+..|.+.++ ..++||.+. .+....+++|+|+|..|..++=+. ..| .+..+++....|.|||+.+|+++..
T Consensus 115 ~~~~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~-----~sc-gct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 115 AQTGVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVT-----TRN-PALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp GGCCCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEE-----ECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred ccCCEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEE-----eCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence 367899999 999999999 999999999999999999997665 345 3788999999999999988877754
No 58
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=96.22 E-value=0.012 Score=60.53 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=38.1
Q ss_pred cCceEEEEEEecCeEEEEEEecCCCCcchHHHHHhhHHHHHHhcCcCCCCCCCCCCCCcceeEecccCCccc
Q psy3271 152 NKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRIT 223 (781)
Q Consensus 152 nKG~v~i~~~~~~~~~~fvn~HL~a~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~i~~~d~~f~~GDlNyRi~ 223 (781)
..+.+++++ . ...|.|.|+.|..++ .|.+....|...+.-. +..+......+++||||-+.+
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~--da~a~v~~I~~~~~~~----~~~~~~~~pwii~GDFNr~P~ 191 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN--DAPALVEEVYNFFRDS----RDPVHQALNWMILGDFNREPA 191 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC--SHHHHHHHHHHHHHTC----SSHHHHTCEEEEEEECSSCHH
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc--cHHHHHHHHHHHHhcC----cccccCCCcEEEEecCCCCCc
Confidence 678888877 2 488999999998432 2444455554432200 000000137899999998776
No 59
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=95.93 E-value=0.026 Score=51.95 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=53.5
Q ss_pred ceeecCC-ceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 442 QVMVDNT-EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 442 ~v~i~~~-~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
.|.+++. ++.|. .-|....+..|+|.|++.-...|.+.. ..+.-+.|.|..|+|.||+++.|.|.+.
T Consensus 8 ~l~i~P~~~l~F~-~p~~~~~~~~l~l~N~s~~~vaFKVKT------T~p~~y~VrP~~Gii~P~~s~~v~V~~q 75 (126)
T 1msp_A 8 DINTQPSQKIVFN-APYDDKHTYHIKITNAGGRRIGWAIKT------TNMRRLSVDPPCGVLDPKEKVLMAVSCD 75 (126)
T ss_dssp CEEEESSSCEEEE-SCCSSCCCEEEEEEECSSSCEEEEEEE------SCTTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eEEEcCCCeEEEc-CcCCcceEEEEEEECCCCCeEEEEEEc------CCCCcEEEECCCeEECCCCEEEEEEEec
Confidence 4677776 67774 245567789999999999999999754 3345689999999999999998888763
No 60
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=95.92 E-value=0.021 Score=52.56 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=52.7
Q ss_pred ceeecCC-ceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 442 QVMVDNT-EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 442 ~v~i~~~-~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
.|.+++. ++.|-- .|....+..|+|.|++.-+..|.+.. ..|.-+.|.|..|+|.||+++.|.|.+.
T Consensus 10 ~L~i~P~~~l~F~~-p~~~~~~~~l~L~N~s~~~vaFKVKT------T~p~~y~VrP~~G~i~P~~s~~v~V~~~ 77 (128)
T 1z9l_A 10 ILVLDPPSDLKFKG-PFTDVVTTNLKLQNPSDRKVCFKVKT------TAPRRYCVRPNSGVIDPGSIVTVSVMLQ 77 (128)
T ss_dssp CSEEESSSEEEEES-CCSSCEEEEEEEECCSSSCEEEEEEE------SCGGGEEEESCEEEECTTCEEEEEEEEC
T ss_pred eEEECCCCeEEEcC-CCCceEEEEEEEECCCCCeEEEEEEC------CCCCceEEeCCCcEECCCCeEEEEEEEC
Confidence 4677775 777731 24456788999999999999999754 3345689999999999999999888853
No 61
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=95.85 E-value=0.018 Score=54.76 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=53.2
Q ss_pred ceeecCC-ceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 442 QVMVDNT-EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 442 ~v~i~~~-~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
-|.+++. ++.|. ..+....+..|+|.|++.-++.|.+.. ..|.-..|.|..|+|.||++++|.|.+.
T Consensus 18 ~L~i~P~~~L~F~-~~~~~~~~~~l~L~N~s~~~VaFKVKT------T~p~~y~VrP~~GiI~P~~s~~V~V~lq 85 (152)
T 1wic_A 18 LLHISPAEELYFG-SIESGEKKTLIVLTNVTKNIVAFKVRT------TAPEKYRVKPSNSSCDPGASIDIIVSPH 85 (152)
T ss_dssp SBCBBSSSCBCCC-CSSSSCCCEEEEEEBCSSSCEEEEEEE------SCTTTEEEESSEEEECTTCEEEEEEEEC
T ss_pred eEEECCCCeEEEe-CCCCceEEEEEEEEcCCCCeEEEEEEC------CCCCceeecCCCcEECCCCeEEEEEEec
Confidence 5677777 67774 334445578999999999999999865 2345689999999999999999988873
No 62
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.71 E-value=0.037 Score=49.51 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=49.8
Q ss_pred ceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 442 ~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
+|++++.++.|.. ......++|.|++.-+..|....- .+.-..|.|..|+|+||++++|.|...
T Consensus 2 sL~i~P~~l~F~~----~~~~~~l~L~N~t~~~vaFKVKtT------~p~~y~VrP~~G~I~P~~~~~i~I~~q 65 (109)
T 1row_A 2 SLTADPPACTVPA----AGVSSTHKLVNGGAEKIVFKIKSS------NNNEYRIAPVFGFVDPSGSKDVVITRT 65 (109)
T ss_dssp -CEEESSSEEEET----TCEEEEEEEEECSSSCEEEEEEES------CSSSEEEECSEEEECTTEEEEEEEEEC
T ss_pred eEEEECCEeEEeC----CCCeEEEEEEcCCCCeEEEEEEeC------CCCceEEcCCceEECCCCeEEEEEEeC
Confidence 4677888776632 123689999999999999996542 346689999999999999999888753
No 63
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.57 E-value=0.03 Score=52.88 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=52.7
Q ss_pred ceeecCC-ceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 442 QVMVDNT-EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 442 ~v~i~~~-~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
-|.+++. ++.|-- -|....+..|+|.|++.-+..|.+.. ..|.-+.|.|..|+|.||+++.|.|.+
T Consensus 14 ~L~i~P~~~L~F~~-p~~~~~~~~l~L~N~s~~~VaFKVKT------T~p~~y~VrP~~GiI~P~~s~~v~V~l 80 (147)
T 2cri_A 14 ILVLDPPSDLKFKG-PFTDVVTTNLKLQNPSDRKVCFKVKT------TAPRRYCVRPNSGIIDPGSIVTVSVML 80 (147)
T ss_dssp CSEEESSSEEEEEC-CSSSCCCEEEEEECCSSSCEEEEEEE------SCTTSEEEESSEEECCTTCEEEEEEEE
T ss_pred eEEECCCCeEEEeC-CCCceEEEEEEEECCCCCcEEEEEEC------CCCccEEEcCCCcEECCCCeEEEEEEE
Confidence 4677885 777731 24466788999999999999999755 234568999999999999999988885
No 64
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.37 E-value=0.076 Score=47.94 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=50.1
Q ss_pred ceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE
Q psy3271 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY 515 (781)
Q Consensus 442 ~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~ 515 (781)
-+++++.++.|-- +....+++|.|++..+..|....- .+...+|.|..|+|.||++++|.|...
T Consensus 10 ~~~~~p~~l~F~~----~gg~~~l~L~N~t~~~vAFKVKtT------~p~~YrVrP~~G~I~Pg~~~~I~I~~q 73 (116)
T 1m1s_A 10 MINVDPPTGNYPA----TGGNSTHNITSESDSRLAFKVKSS------NNEHYRVRPVYGFVDAKGKSKLDINRL 73 (116)
T ss_dssp SEEEESSEEEECT----TCEEEEEEEEECSSSEEEEEEEES------CTTTEEEECSEEEECTTCEEEEEEEEC
T ss_pred eeecCCCeEEEec----CCCEEEEEEECCCCCeEEEEEEec------CCCceEEcCCceEECCCCeEEEEEEeC
Confidence 3566777776642 235888999999999999997552 246789999999999999999888764
No 65
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=78.33 E-value=12 Score=40.25 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=67.9
Q ss_pred ceeeceeeeece---eeeEEEEeecceeeEEE--------EEEEec--CCCCCCC------CceEEecceeEeCCCCeEE
Q psy3271 449 EVVFDTLRFLEA---QNKTLIIANTGQVPVQF--------EFIKKF--DDSNYCK------DWLHIEPYMGFILPGEKCD 509 (781)
Q Consensus 449 ~v~fg~v~~~~~---~~~~l~i~N~g~~~~~~--------~f~~~~--~~~~~~~------~WL~v~P~~g~i~pge~~~ 509 (781)
.+..-+-+|+.+ -+-+++|+|+|.-|+.+ +|..+. .++...| .=|+ +|. -|.|||+.+
T Consensus 285 ~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~--pI~PGETrt 361 (419)
T 3rfr_A 285 TTELNGGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDD--VIAPGESKE 361 (419)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCC--CBCTTCEEE
T ss_pred EEEEeceEEecCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCC--CcCCCcceE
Confidence 356677788877 34568999999977654 555431 1111112 2267 777 999999999
Q ss_pred EEEEEEEchh-hhhhh----ccccccccceEEEeeecCCceEEEeecccccc
Q psy3271 510 VKLEVYVDKR-CASKM----NSGQDKIYDILVLHLEGGKDLFITVTGSYERS 556 (781)
Q Consensus 510 i~~~~~vd~~-~a~~l----n~g~~~l~diLvL~le~G~d~FI~v~g~~~~s 556 (781)
+++++. |.. ....| ++.+.++--.|-..-+.|+.+.+.|.|...|+
T Consensus 362 ~~V~a~-da~WeveRL~~l~~D~dSrfgGLLfF~d~~G~r~i~~I~~pvIP~ 412 (419)
T 3rfr_A 362 IVVKIQ-DARWDIERLSDLAYDTDSQVGGLLFFFTPDGKRFAAEIGGPVIPK 412 (419)
T ss_dssp EEEEEE-CHHHHHTTGGGGGGSSSCEEEEEEEEECSSSCEEEEEEEEECEEE
T ss_pred EEEEee-hHHHHHHHHhhhhcCchhheeEEEEEEcCCCCEEEEeccCcccce
Confidence 998876 332 22222 44444455566677778999999998876655
No 66
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=69.85 E-value=36 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=67.7
Q ss_pred eeeceeeeece---eeeEEEEeecceeeEEE--------EEEEecC--CCCCCC------CceEEecceeEeCCCCeEEE
Q psy3271 450 VVFDTLRFLEA---QNKTLIIANTGQVPVQF--------EFIKKFD--DSNYCK------DWLHIEPYMGFILPGEKCDV 510 (781)
Q Consensus 450 v~fg~v~~~~~---~~~~l~i~N~g~~~~~~--------~f~~~~~--~~~~~~------~WL~v~P~~g~i~pge~~~i 510 (781)
+..-+-+|+.+ -+-+++|+|+|..|+.. +|+.+.- .+...| .=|+|+|.. -|.|||+.+|
T Consensus 252 ~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~-pI~PGETr~~ 330 (382)
T 1yew_A 252 VKVEDATYRVPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNS-PLAPGETRTV 330 (382)
T ss_dssp EEEEEEEEESSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCS-CBCTTCEEEE
T ss_pred EEeeccEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCC-CcCCCceeEE
Confidence 45666788777 34568999999987764 4554311 122222 247777654 5899999999
Q ss_pred EEEEEEchh-hhhhh----ccccccccceEEEeeecCCceEEEeecccccc
Q psy3271 511 KLEVYVDKR-CASKM----NSGQDKIYDILVLHLEGGKDLFITVTGSYERS 556 (781)
Q Consensus 511 ~~~~~vd~~-~a~~l----n~g~~~l~diLvL~le~G~d~FI~v~g~~~~s 556 (781)
++++. |.. ....| ++.+...--.|-+.-+.|+.+.+.|.|...|+
T Consensus 331 ~v~a~-da~WeveRL~~l~~D~dSrfgGLLfF~d~~G~r~~~~I~~pvIP~ 380 (382)
T 1yew_A 331 DVTAS-DAAWEVYRLSDIIYDPDSRFAGLLFFFDATGNRQVVQIDAPLIPS 380 (382)
T ss_dssp EEEEE-CHHHHHTCGGGGGGSSCCEEEEEEEEEETTSCEEEEEEEEECEEE
T ss_pred EEEee-hHHHHHHHhhhhhcCcccceeEEEEEEcCCCCEEEEeccCccccc
Confidence 99886 332 22233 33333344556677777999999998865554
No 67
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=40.57 E-value=90 Score=30.84 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=44.8
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeeccee-eEEEEEE-EecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQV-PVQFEFI-KKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~-~~~~~f~-~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
|.++..-|.|.. ..+..+|+|.|+|.. |...+-- ...+++.....-+-|+|.--.|.||++-.|+|..
T Consensus 2 v~l~~TRvIy~~----~~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 71 (218)
T 2xg5_A 2 VSLDRTRAVFDG----SEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST 71 (218)
T ss_dssp EEESCSEEEEET----TSSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred cEeCceEEEEeC----CCCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence 445555555532 346788999999987 6655532 2222222103457899999999999999999853
No 68
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=39.45 E-value=99 Score=30.57 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=52.6
Q ss_pred ceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEE-EecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE-----
Q psy3271 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFI-KKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY----- 515 (781)
Q Consensus 442 ~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~-~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~----- 515 (781)
+|.++..-|.|.. ..+..+|+|.|+|..|.-.+-- ...+++.....-+-|+|.--.|.||++-.|+|.-.
T Consensus 13 gv~l~~TRvIy~~----~~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~~LP 88 (218)
T 4ay0_A 13 GVTIGESRIIYPL----DAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFP 88 (218)
T ss_dssp CEEESCCEEEEET----TCSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSCCCC
T ss_pred eEEECceEEEECC----CCcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCCCCC
Confidence 5666666666642 3467889999999988765532 22222222233477999999999999999988532
Q ss_pred Echhhhhhhc
Q psy3271 516 VDKRCASKMN 525 (781)
Q Consensus 516 vd~~~a~~ln 525 (781)
-|.|++.+||
T Consensus 89 ~DRESlf~ln 98 (218)
T 4ay0_A 89 RDKESLKWLC 98 (218)
T ss_dssp SSSCEEEEEE
T ss_pred cCcEEEEEEE
Confidence 1445555555
No 69
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=37.47 E-value=81 Score=32.07 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEE-EecCCCC---CCCCceEEecceeEeCCCCeEEEEEEEE--
Q psy3271 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFI-KKFDDSN---YCKDWLHIEPYMGFILPGEKCDVKLEVY-- 515 (781)
Q Consensus 442 ~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~-~~~~~~~---~~~~WL~v~P~~g~i~pge~~~i~~~~~-- 515 (781)
+|.+++.-|.|.. ..+..+|+|.|+|..|...+-- ...+++. .....+-|+|.--.|.||++-.|+|.-.
T Consensus 29 ~v~i~~TRvIy~~----~~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~ 104 (257)
T 3q48_A 29 GLIAQGTRVVFPA----SEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA 104 (257)
T ss_dssp --CCSCSEEEEET----TCSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC
T ss_pred eEEEcceEEEEeC----CCcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC
Confidence 5666776666643 3357889999999877665532 3222211 1134689999999999999999988532
Q ss_pred ---Echhhhhhhc
Q psy3271 516 ---VDKRCASKMN 525 (781)
Q Consensus 516 ---vd~~~a~~ln 525 (781)
-|.|.+.+||
T Consensus 105 ~LP~DrESlf~ln 117 (257)
T 3q48_A 105 PLPTDRESLFWLN 117 (257)
T ss_dssp CCCSSSCEEEEEE
T ss_pred CCCCCceeEEEEE
Confidence 2446666655
No 70
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=36.60 E-value=1e+02 Score=30.97 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=53.0
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEE-EecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE----
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFI-KKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY---- 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~-~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~---- 515 (781)
-+|.++..-|.|.. ..+..+|+|.|+|..|...+-- ...+++. ..-+-|+|.--.|.||++-.|+|.-.
T Consensus 22 a~v~l~~TRvIy~~----~~k~~sl~l~N~~~~P~LvQsWv~~~~~~~--~~pfivtPPlfRlep~~~q~lRIi~~~~~L 95 (239)
T 4djm_A 22 FSLHLGATRVVYNP----ASSGETLTVINDQDYPMLVQSEVLSEDQKS--PAPFVVTPPLFRLDGQQSSRLRIVRTGGEF 95 (239)
T ss_dssp ECCEESCSEEEECT----TSSCEEEEEEECSSSCEEEEEEEECTTSSS--BCSEEEESSEEEECTTEEEEEEEEECSCCC
T ss_pred EeEEEcceEEEEeC----CCCEEEEEEEeCCCCcEEEEEEEEcCCCCc--cCCEEEcCCeEEECCCCceEEEEEECCCCC
Confidence 35666666666642 3467899999999877654432 2222222 33488999999999999999988532
Q ss_pred -Echhhhhhhcc
Q psy3271 516 -VDKRCASKMNS 526 (781)
Q Consensus 516 -vd~~~a~~ln~ 526 (781)
-|.|++.+||.
T Consensus 96 P~DRESlf~lnv 107 (239)
T 4djm_A 96 PPDRESLQWICV 107 (239)
T ss_dssp CSSSCEEEEEEE
T ss_pred CCCceEEEEEEE
Confidence 24466666663
No 71
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=36.25 E-value=1.2e+02 Score=29.61 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=49.9
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeeccee-eEEEEE-EEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE-EE---
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQV-PVQFEF-IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV-YV--- 516 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~-~~~~~f-~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~-~v--- 516 (781)
|.++..-|.|.. ..+..+|+|.|+|.. |...+- +...+++. ..-+-|+|.--.|.||++-.|+|.- .=
T Consensus 2 v~l~~TRvIy~~----~~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~--~~pfivtPPl~rl~p~~~q~lRI~~~~~~~l 75 (205)
T 1klf_A 2 VALGATRVIYPA----GQKQVQLAVTNNDENSTYLIQSWVENADGVK--DGRFIVTPPLFAMKGKKENTLRILDATNNQL 75 (205)
T ss_dssp EEESCSEEEEET----TCSEEEEEEEECCSSCCEEEEEEEEETTSCC--CSSEEEESSEEEECSSEEEEEEEEECSCSCS
T ss_pred eEecceEEEEeC----CCcEEEEEEEcCCCCCcEEEEEEEecCCCCc--cCCEEEcCCeEEECCCCceEEEEEecCCCCC
Confidence 445555555532 346789999999976 655543 23333222 3457899999999999999999864 21
Q ss_pred --chhhhhhhc
Q psy3271 517 --DKRCASKMN 525 (781)
Q Consensus 517 --d~~~a~~ln 525 (781)
|.|++.+||
T Consensus 76 P~DrEslf~ln 86 (205)
T 1klf_A 76 PQDRESLFWMN 86 (205)
T ss_dssp CSSSCEEEEEE
T ss_pred CCCceEEEEEE
Confidence 345565555
No 72
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=35.57 E-value=1.1e+02 Score=30.13 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=52.9
Q ss_pred CceeecCCceeeceeeeeceeeeEEEEeecceeeEEEEEE-EecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE----
Q psy3271 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFI-KKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY---- 515 (781)
Q Consensus 441 p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~~~f~-~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~---- 515 (781)
-+|.++..-|.|.. ..+..+|+|.|+|..|...+-- ...+++. ..-+-|+|.--.|.||++-.|+|.-.
T Consensus 12 A~v~i~~TRvIy~~----~~k~~sl~l~N~~~~p~LvQsWv~~~~~~~--~~pfivtPPl~rl~p~~~q~lRI~~~~~~l 85 (221)
T 2co7_B 12 FSVKLGATRVIYHA----GTAGATLSVSNPQNYPILVQSSVKAADKSS--PAPFLVMPPLFRLEANQQSQLRIVRTGGDM 85 (221)
T ss_dssp EECEESCSEEEEET----TSSCEEEEEECCSSSCEEEEEEEEETTSSS--BCSEEEESSEEEECTTCEEEEEEEECCCCC
T ss_pred EEEEEcceEEEEcC----CCCEEEEEEEcCCCCcEEEEEEEecCCCCc--cCCEEEeCCEEEECCCCceEEEEEECCCCC
Confidence 35666666666642 3468899999999877665542 2222222 34588999999999999999998532
Q ss_pred -Echhhhhhhc
Q psy3271 516 -VDKRCASKMN 525 (781)
Q Consensus 516 -vd~~~a~~ln 525 (781)
-|.|++.+||
T Consensus 86 P~DrEslf~ln 96 (221)
T 2co7_B 86 PTDRETLQWVC 96 (221)
T ss_dssp CSSSCEEEEEE
T ss_pred CCCceEEEEEE
Confidence 1345555555
No 73
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=31.26 E-value=1e+02 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.6
Q ss_pred CceEEecceeEeCCCCeEEEEEEEEE
Q psy3271 491 DWLHIEPYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 491 ~WL~v~P~~g~i~pge~~~i~~~~~v 516 (781)
-.|.|.-..|.|.||.+.+|.+.+..
T Consensus 90 yYvEI~Ft~g~l~pg~~~eiQ~ri~~ 115 (152)
T 4b9f_A 90 TYLEISFTGGTLEPGAHVQIQGRFAK 115 (152)
T ss_dssp EEEEEEESSCEECTTCEEEEEEEEEE
T ss_pred EEEEEEccCceEcCCCcEEEEEEEEC
Confidence 47889988999999999887777654
No 74
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=35.73 E-value=11 Score=23.61 Aligned_cols=10 Identities=40% Similarity=0.797 Sum_probs=7.8
Q ss_pred cCCcccccce
Q psy3271 288 RAPAWCDRVL 297 (781)
Q Consensus 288 R~PswcDRIL 297 (781)
-.|+|.|||=
T Consensus 7 cr~nWs~RV~ 16 (26)
T 2yka_B 7 CKTSWADRVR 16 (26)
Confidence 3589999974
No 75
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=27.75 E-value=2e+02 Score=28.58 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=48.1
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeeccee-eEEE-EEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEEE-----
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQV-PVQF-EFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVY----- 515 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~-~~~~-~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~~----- 515 (781)
++++..-|.|.. ..+..+|+|.|+|.- |... ..+...+++. ...-+-|+|.--.|.||++-.|+|...
T Consensus 2 ~~l~~TRvIy~~----~~k~~sl~l~N~~~~~p~LvQsWid~~~~~~-~~~pfivtPPlfRlep~~~q~lRIi~~~~~LP 76 (224)
T 3gfu_C 2 LAVDQTRYIFRG----DKDALTITVTNNDKERTFGGQAWVDNIVEKD-TRPTFVVTPSFFKVKPNGQQTLRIIMASDHLP 76 (224)
T ss_dssp EECSCSEEEEET----TSSCEEEEEEECCSSCCEEEEEEEEESSCCS-CSCSEEEESSEEEECTTCEEEEEEEECSCCCC
T ss_pred ccccceEEEEeC----CCceEEEEEEeCCCCccEEEEEEEecCCCCc-ccCCEEEcCCeEEECCCCceEEEEEECCCCCC
Confidence 344455555532 336788999999863 4322 2334333222 234588999999999999999988532
Q ss_pred Echhhhhhhc
Q psy3271 516 VDKRCASKMN 525 (781)
Q Consensus 516 vd~~~a~~ln 525 (781)
-|.|++.+||
T Consensus 77 ~DRESlf~ln 86 (224)
T 3gfu_C 77 KDKESVYWLN 86 (224)
T ss_dssp SSSCEEEEEE
T ss_pred CCceEEEEEE
Confidence 1446666665
No 76
>3zuc_A Cellulosomal scaffoldin; crystalline cellulose-binding protein, sugar binding protein cellulosome; HET: EDO 1PE; 1.00A {Acetivibrio cellulolyticus} SCOP: b.2.2.0 PDB: 3zu8_A* 3zqw_A*
Probab=27.53 E-value=1e+02 Score=28.78 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCceEEecce--eEeCCCCeEEEEEEEEE
Q psy3271 490 KDWLHIEPYM--GFILPGEKCDVKLEVYV 516 (781)
Q Consensus 490 ~~WL~v~P~~--g~i~pge~~~i~~~~~v 516 (781)
.-.|.|+-.. |.|.||++.+|.+.+.-
T Consensus 84 d~YlEI~F~~~ag~l~pg~~~eiq~Ri~~ 112 (153)
T 3zuc_A 84 DQYLEIAFSSAAGTLAANTSIEVQGRFAK 112 (153)
T ss_dssp EEEEEEEECGGGCEECTTEEEEEEEEEEE
T ss_pred CeEEEEEeCCCCceECCCCceEEEEEEEc
Confidence 3578887665 89999988766666543
No 77
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=26.51 E-value=1.7e+02 Score=28.51 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=43.4
Q ss_pred eeecCCceeeceeeeeceeeeEEEEeecce-eeEEEEEE-EecCCCCCCCCceEEecceeEeCCCCeEEEEEE
Q psy3271 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQ-VPVQFEFI-KKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLE 513 (781)
Q Consensus 443 v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~-~~~~~~f~-~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~ 513 (781)
|.++..-|.|.. ..+..+|+|.|+|. .|...+-- ...++. ...-+-|+|.--.|.||++-.|+|.
T Consensus 2 v~l~~TRvIy~~----~~k~~sl~l~N~~~~~p~LvQsWv~~~~~~--~~~pfivtPPl~rl~p~~~q~lRI~ 68 (206)
T 1l4i_A 2 VALGATRVIYPE----GQKQVQLAVTNNDDKSSYLIQSWIENAEGK--KDARFVITPPLFSMQGKKENTLRII 68 (206)
T ss_dssp EEESCSEEEEET----TCSEEEEEEEECCTTCEEEEEEEEEETTSC--BCSSEEEESSEEEEESSEEEEEEEE
T ss_pred eEeCceEEEEeC----CCcEEEEEEEeCCCCccEEEEEEEecCCCC--ccCCEEEcCCeEEECCCCceEEEEE
Confidence 445555555532 34678899999986 66554432 222222 2345789999999999999999886
No 78
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=26.46 E-value=76 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.8
Q ss_pred eEeCCCCeEEEEEEEEEchhhhh
Q psy3271 500 GFILPGEKCDVKLEVYVDKRCAS 522 (781)
Q Consensus 500 g~i~pge~~~i~~~~~vd~~~a~ 522 (781)
=.|.|||++++-+..+||++...
T Consensus 106 Q~L~pgE~~~MPV~F~IDP~i~~ 128 (164)
T 1so9_A 106 TTLEPGEEMEMPVVFFVDPEIVK 128 (164)
T ss_dssp CEECTTCEEEEEECCCBCGGGGS
T ss_pred cccCCCCeEeeeEEEEECCCcCC
Confidence 38999999999999999998773
No 79
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=24.08 E-value=1.6e+02 Score=34.61 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=31.3
Q ss_pred eeeEEEEeecceeeEEEE---EEEecCCCCC-CCCceEEecceeEeCCCCeEEEEEEEEE
Q psy3271 461 QNKTLIIANTGQVPVQFE---FIKKFDDSNY-CKDWLHIEPYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~~~~---f~~~~~~~~~-~~~WL~v~P~~g~i~pge~~~i~~~~~v 516 (781)
.+-+++|+|||.+...=- ++..+..... ....|+=- .+=.|.|||+.+|+|++..
T Consensus 615 ~~vsv~VtNtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF-~kv~L~pGes~~V~~~l~~ 673 (713)
T 3zyz_A 615 ATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGF-AKLNLTPGQSGTATFNIRR 673 (713)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECCTTSSSCCSCEEEEE-EEEEECTTCEEEEEEEEEG
T ss_pred EEEEEEEEeCCCCccceeeeeeeecCCCCCCchhHHhhhc-ccceeCCCCeEEEEEEEcH
Confidence 467899999997643211 2233322211 11334311 1225999999999999854
No 80
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=23.07 E-value=2.6e+02 Score=25.05 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=36.9
Q ss_pred cCCceeecCCceeeceeeeeceeeeEEEEeecceeeEE-EEEEEecCCCCCCCCceEEecceeEeCCCCeEEEEEEE
Q psy3271 439 FLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQ-FEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEV 514 (781)
Q Consensus 439 ~~p~v~i~~~~v~fg~v~~~~~~~~~l~i~N~g~~~~~-~~f~~~~~~~~~~~~WL~v~P~~g~i~pge~~~i~~~~ 514 (781)
..|+++++- ..-..+.-.+...-.++|+|.|..+|. |...--.++. . +.-. .-.|.||++.++++..
T Consensus 15 ~~pDL~V~i--s~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~-~----v~t~--~v~La~G~s~tv~f~~ 82 (127)
T 3idu_A 15 EFPDLTVEI--KGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGT-L----YKNW--TVSLGPKEEKVLTFNW 82 (127)
T ss_dssp SSCCEEEEE--ESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTE-E----EEEE--EEEECTTCEEEEEEEE
T ss_pred cCCCeEEEe--cCCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCE-E----EeeE--EeccCCCCeEEEEEEE
Confidence 467887711 122334445677889999999987743 2222122222 1 1111 1247888877766663
No 81
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=21.10 E-value=1.6e+02 Score=25.32 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=36.4
Q ss_pred eeeEEEEeecceeeEEEE----EEEe-----cCCCCCCCCceEEeccee---EeCCCCeEEEEEEEEEchhhhhhh
Q psy3271 461 QNKTLIIANTGQVPVQFE----FIKK-----FDDSNYCKDWLHIEPYMG---FILPGEKCDVKLEVYVDKRCASKM 524 (781)
Q Consensus 461 ~~~~l~i~N~g~~~~~~~----f~~~-----~~~~~~~~~WL~v~P~~g---~i~pge~~~i~~~~~vd~~~a~~l 524 (781)
.+.+|+++|||.-|.+.- |..- .|..... -.+..-++| ..+||++.+|++.-+--...+..+
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~--G~RLdIpAGTavRFEPG~~r~V~LV~~~G~r~v~Gf 93 (101)
T 4ep8_B 20 ATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAA--GYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGF 93 (101)
T ss_dssp CEEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTT--TEEECSSTTCEEEECTTCEEEEEEEECCTTCEECST
T ss_pred CEEEEEEEeCCCcceEEccccChhHcCcceeecHhhcc--CceecccCCCeEeeCCCCeEEEEEEEccCceEEEcC
Confidence 577899999998887643 3221 1111111 233443333 679999999998765433444433
No 82
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=20.77 E-value=2.1e+02 Score=33.50 Aligned_cols=56 Identities=27% Similarity=0.211 Sum_probs=32.8
Q ss_pred eeeeEEEEeecceeeE----EEEEEEecCCC-CCCCCceEEecceeEeCCCCeEEEEEEEEE
Q psy3271 460 AQNKTLIIANTGQVPV----QFEFIKKFDDS-NYCKDWLHIEPYMGFILPGEKCDVKLEVYV 516 (781)
Q Consensus 460 ~~~~~l~i~N~g~~~~----~~~f~~~~~~~-~~~~~WL~v~P~~g~i~pge~~~i~~~~~v 516 (781)
..+-+++|+|||.+.. +. ++..+... .-....|+=--....|.|||+.+|+|++..
T Consensus 616 ~~~v~v~VtNtG~~~G~eVvQl-Yv~~~~~~~~~P~k~L~gF~kv~~L~pGes~~V~~~l~~ 676 (721)
T 2x41_A 616 TLRVQYRIENTGGRAGKEVSQV-YIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPV 676 (721)
T ss_dssp EEEEEEEEEECSSSCBCCEEEE-EEECCCSSSCCCSCEEEEEEECCCBCTTCEEEEEEEEEG
T ss_pred eEEEEEEEEECCCCCCcEEeeE-EEccCCCCCCCchHHhhcccccccCCCCCeEEEEEEECH
Confidence 3567899999998532 22 22323211 111234442222336899999999999865
Done!