RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3271
(781 letters)
>gnl|CDD|197327 cd09093, INPP5c_INPP5B, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of Type II inositol
polyphosphate 5-phosphatase I, Oculocerebrorenal
syndrome of Lowe 1, and related proteins. This
subfamily contains the INPP5c domain of type II inositol
polyphosphate 5-phosphatase I (INPP5B),
Oculocerebrorenal syndrome of Lowe 1 (OCRL-1), and
related proteins. It belongs to a family of
Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), and to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. INPP5B and OCRL1 preferentially hydrolyze the
5-phosphate of phosphatidylinositol (4,5)- bisphosphate
[PI(4,5)P2] and phosphatidylinositol (3,4,5)-
trisphosphate [PI(3,4,5)P3]. INPP5B can also hydrolyze
soluble inositol (1,4,5)-trisphosphate [I(1,4,5)P3] and
inositol (1,3,4,5)-tetrakisphosphate [I(1,3,4,5)P4].
INPP5B participates in the endocytic pathway and in the
early secretory pathway. In the latter, it may function
in retrograde ERGIC (ER-to-Golgi intermediate
compartment)-to-ER transport; it binds specific RAB
proteins within the secretory pathway. In the endocytic
pathway, it binds RAB5 and during endocytosis, may
function in a RAB5-controlled cascade for converting
PI(3,4,5)P3 to phosphatidylinositol 3-phosphate (PI3P).
This cascade may link growth factor signaling and
membrane dynamics. Mutation in OCRL1 is implicated in
Lowe syndrome, an X-linked recessive multisystem
disorder, which includes defects in eye, brain, and
kidney function, and in Type 2 Dent's disease, a
disorder with only the renal symptoms. OCRL-1 may have a
role in membrane trafficking within the endocytic
pathway and at the trans-Golgi network, and may
participate in actin dynamics or signaling from
endomembranes. OCRL1 and INPP5B have overlapping
functions: deletion of both 5-phosphatases in mice is
embryonic lethal, deletion of OCRL1 alone has no
phenotype, and deletion of Inpp5b alone has only a mild
phenotype (male sterility). Several of the proteins that
interact with OCRL1 also bind INPP5B, for examples,
inositol polyphosphate phosphatase interacting protein
of 27kDa (IPIP27)A and B (also known as Ses1 and 2), and
endocytic signaling adaptor APPL1. OCRL1, but not
INPP5B, binds clathrin heavy chain, the plasma membrane
AP2 adaptor subunit alpha-adaptin. In addition to this
INPP5c domain, most proteins in this subfamily have a
C-terminal RhoGAP (GTPase-activator protein [GAP] for
Rho-like small GTPases) domain.
Length = 292
Score = 418 bits (1076), Expect = e-141
Identities = 161/305 (52%), Positives = 201/305 (65%), Gaps = 38/305 (12%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 60
++F+GTWNVNGQSP L WL+ +PP IYAIGFQELDLS EAFLFN++ +E EW++
Sbjct: 1 FRIFVGTWNVNGQSPDESLRPWLSCDEEPPDIYAIGFQELDLSAEAFLFNDSSREQEWVK 60
Query: 61 AVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVA 120
AV + LHP A Y+K+ L+RLVGMML+VFV++ QH+ VA++TVGTGIMGK+GNKGGVA
Sbjct: 61 AVERGLHPDAKYKKVKLIRLVGMMLLVFVKKEHRQHIKEVAAETVGTGIMGKMGNKGGVA 120
Query: 121 IRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE 180
+R H T+ CFVNSHLAAH EE
Sbjct: 121 VRFQFHNTTF-------------------------------------CFVNSHLAAHMEE 143
Query: 181 FERRNQDFHDIDSRIAFT-GFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGKY 239
ERRNQD+ DI +R+ F PP SI DHD ++WLGDLNYRI +L +VK LI
Sbjct: 144 VERRNQDYKDICARMKFEDPDGPPLSISDHDVVFWLGDLNYRIQELPTEEVKELIEKNDL 203
Query: 240 QTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYK 299
+ +L++DQL Q G VF G+ EG I+F PTYKYD GTD+WDSSEK RAPAWCDR+L++
Sbjct: 204 EELLKYDQLNIQRRAGKVFEGFTEGEINFIPTYKYDPGTDNWDSSEKCRAPAWCDRILWR 263
Query: 300 GDGIQ 304
G I
Sbjct: 264 GTNIV 268
Score = 130 bits (328), Expect = 2e-33
Identities = 50/83 (60%), Positives = 65/83 (78%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362
++F+GTWNVNGQSP L WL+ +PP IYAIGFQELDLS EAFLFN++ +E EW++
Sbjct: 1 FRIFVGTWNVNGQSPDESLRPWLSCDEEPPDIYAIGFQELDLSAEAFLFNDSSREQEWVK 60
Query: 363 AVTKSLHPGAAYQKICLVRLVGI 385
AV + LHP A Y+K+ L+RLVG+
Sbjct: 61 AVERGLHPDAKYKKVKLIRLVGM 83
Score = 45.8 bits (109), Expect = 4e-05
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFN 410
Q+ Y+S LK SDHKPV +LF+
Sbjct: 268 VQLSYRSHMELKTSDHKPVSALFD 291
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 296 bits (761), Expect = 1e-94
Identities = 129/304 (42%), Positives = 177/304 (58%), Gaps = 40/304 (13%)
Query: 1 IQVFIGTWNVNGQ-SPSCDLSDWLTT-TVDPPHIYAIGFQELDLSKEAFLFNE-TLKEDE 57
+++F+ TWNV G SP +L +WL+ + P IYA+G QE+D+S + F+ N+ + K E
Sbjct: 1 VKIFVVTWNVGGGISPPENLENWLSPKGTEAPDIYAVGVQEVDMSVQGFVGNDDSAKARE 60
Query: 58 WLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKG 117
W+ + ++L+ Y + +LVG+ L VFV++ + ++
Sbjct: 61 WVDNIQEALNEKENYVLLGSAQLVGIFLFVFVKKEHLPQIKDL----------------- 103
Query: 118 GVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAH 177
V TVGTG GKLGNKGGVAIR ++ TS CFVNSHLAA
Sbjct: 104 ------------------EVEGVTVGTGGGGKLGNKGGVAIRFQINDTSFCFVNSHLAAG 145
Query: 178 TEEFERRNQDFHDIDSRIAF-TGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINA 236
EE ERRNQD+ DI S++ F G SI DHD ++W GDLNYRI D +V+ LI+
Sbjct: 146 QEEVERRNQDYRDILSKLKFYRGDPAIDSIFDHDVVFWFGDLNYRI-DSTDDEVRKLISQ 204
Query: 237 GKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRV 296
G +LE DQL +Q KG VF G++E I F PTYK+D GTD++D+S+K R PAWCDR+
Sbjct: 205 GDLDDLLEKDQLKKQKEKGKVFDGFQELPITFPPTYKFDPGTDEYDTSDKKRIPAWCDRI 264
Query: 297 LYKG 300
LYK
Sbjct: 265 LYKS 268
Score = 78.9 bits (195), Expect = 6e-16
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 303 IQVFIGTWNVNGQ-SPSCDLSDWLTT-TVDPPHIYAIGFQELDLSKEAFLFNE-TLKEDE 359
+++F+ TWNV G SP +L +WL+ + P IYA+G QE+D+S + F+ N+ + K E
Sbjct: 1 VKIFVVTWNVGGGISPPENLENWLSPKGTEAPDIYAVGVQEVDMSVQGFVGNDDSAKARE 60
Query: 360 WLRAVTKSLHPGAAYQKICLVRLVGI 385
W+ + ++L+ Y + +LVGI
Sbjct: 61 WVDNIQEALNEKENYVLLGSAQLVGI 86
Score = 35.0 bits (81), Expect = 0.12
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFN 410
Q + Y SVP K SDHKPV + F
Sbjct: 275 QPLSYTSVPLYKTSDHKPVRATFR 298
>gnl|CDD|214525 smart00128, IPPc, Inositol polyphosphate phosphatase, catalytic
domain homologues. Mg(2+)-dependent/Li(+)-sensitive
enzymes.
Length = 306
Score = 281 bits (720), Expect = 2e-88
Identities = 118/310 (38%), Positives = 159/310 (51%), Gaps = 46/310 (14%)
Query: 1 IQVFIGTWNVNGQS-PSCDLSDWLTTTVD-----PPHIYAIGFQELDLSKE-AFLFNETL 53
I+V IGTWNV G P D++ WL ++ P IY IG QE+ L
Sbjct: 3 IKVLIGTWNVGGLESPKVDVTSWLFQKIEVKQSEKPDIYVIGLQEVVGLAPGVILETIAG 62
Query: 54 KEDEWLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKL 113
KE W + SL+ Y + V LVG++++VFV+ N
Sbjct: 63 KERLWSDLLESSLNGDGQYNVLAKVYLVGILVLVFVKANHL------------------- 103
Query: 114 GNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSH 173
V I+ +V + TV TG+ G GNKG VA+R L TS CFVNSH
Sbjct: 104 -----VYIK-------------DVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSH 145
Query: 174 LAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNL 233
LAA E+RNQD+ I ++F S DHD ++W GDLN+R+ +V+
Sbjct: 146 LAAGASNVEQRNQDYKTILRALSFPE-RALLSQFDHDVVFWFGDLNFRLDSPSYEEVRRK 204
Query: 234 INAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDV-GTDDWDSSEKNRAPAW 292
I+ ++ +LE DQL RQ G VF G++EG I F PTYKYD GT+ +D+SEK R PAW
Sbjct: 205 ISKKEFDDLLEKDQLNRQREAGKVFKGFQEGPITFPPTYKYDSVGTETYDTSEKKRVPAW 264
Query: 293 CDRVLYKGDG 302
CDR+LY+ +G
Sbjct: 265 CDRILYRSNG 274
Score = 75.5 bits (186), Expect = 9e-15
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 301 DGIQVFIGTWNVNGQS-PSCDLSDWLTTTVD-----PPHIYAIGFQELDLSKE-AFLFNE 353
I+V IGTWNV G P D++ WL ++ P IY IG QE+ L
Sbjct: 1 RDIKVLIGTWNVGGLESPKVDVTSWLFQKIEVKQSEKPDIYVIGLQEVVGLAPGVILETI 60
Query: 354 TLKEDEWLRAVTKSLHPGAAYQKICLVRLVGI 385
KE W + SL+ Y + V LVGI
Sbjct: 61 AGKERLWSDLLESSLNGDGQYNVLAKVYLVGI 92
Score = 32.7 bits (75), Expect = 0.60
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 391 YKSVPSLKISDHKPVMSLFNSDI 413
Y S + SDHKPV + F +
Sbjct: 283 YHSGMEITTSDHKPVFATFRLKV 305
>gnl|CDD|197324 cd09090, INPP5c_ScInp51p-like, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of Saccharomyces
cerevisiae Inp51p, Inp52p, and Inp53p, and related
proteins. This subfamily contains the INPP5c domain of
three Saccharomyces cerevisiae synaptojanin-like
inositol polyphosphate 5-phosphatases (INP51, INP52, and
INP53), Schizosaccharomyces pombe synaptojanin
(SPsynaptojanin), and related proteins. It belongs to a
family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. In addition to this INPP5c domain, these proteins
have an N-terminal catalytic Sac1-like domain (found in
other proteins including the phophoinositide phosphatase
Sac1p), and a C-terminal proline-rich domain (PRD). The
Sac1 domain allows Inp52p and Inp53p to recognize and
dephosphorylate a wider range of substrates including
PI3P, PI4P, and PI(3,5)P2. The Sac1 domain of Inp51p is
non-functional. Disruption of any two of INP51, INP52,
and INP53, in S. cerevisiae leads to abnormal vacuolar
and plasma membrane morphology. During hyperosmotic
stress, Inp52p and Inp53p localize at actin patches,
where they may facilitate the hydrolysis of PI(4,5)P2,
and consequently promote actin rearrangement to regulate
cell growth. SPsynaptojanin is also active against a
range of soluble and lipid inositol phosphates,
including I(1,4,5)P3, I(1,3,4,5)P4, I(1,4,5,6)P4,
PI(4,5)P2, and PIP3. Transformation of S. cerevisiae
with a plasmid expressing the SPsynaptojanin
5-phosphatase domain rescues inp51/inp52/inp53
triple-mutant strains.
Length = 291
Score = 256 bits (656), Expect = 2e-79
Identities = 123/310 (39%), Positives = 165/310 (53%), Gaps = 48/310 (15%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWL--TTTVDPPHIYAIGFQEL-DLSKEAFLFNETLKEDE 57
I +F+GT+NVNG+S DLS WL + P I IG QE+ +L+ L ++ K
Sbjct: 1 INIFVGTFNVNGKSYKDDLSSWLFPEENDELPDIVVIGLQEVVELTAGQILNSDPSKSSF 60
Query: 58 WLRAVTKSLHPGAAYQKICLVR---LVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLG 114
W + + +L+ G +K L+R LVG L+ FV+E+ V NV T TG+
Sbjct: 61 WEKKIKTTLN-GRGGEKYVLLRSEQLVGTALLFFVKESQLPKVKNVEGSTKKTGL----- 114
Query: 115 NKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHL 174
GG++ GNKG VAIR D TS CFV SHL
Sbjct: 115 --GGMS------------------------------GNKGAVAIRFDYGDTSFCFVTSHL 142
Query: 175 AAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLI 234
AA +E RN D+ I + F+ ++IKDHD + WLGD NYRI L V+ I
Sbjct: 143 AAGLTNYEERNNDYKTIARGLRFS---RGRTIKDHDHVIWLGDFNYRI-SLTNEDVRRFI 198
Query: 235 NAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCD 294
GK +LE+DQL +Q G VF G+ EG I F PTYKYD GTD++D+SEK R PAW D
Sbjct: 199 LNGKLDKLLEYDQLNQQMNAGEVFPGFSEGPITFPPTYKYDKGTDNYDTSEKQRIPAWTD 258
Query: 295 RVLYKGDGIQ 304
R+LY+G+ ++
Sbjct: 259 RILYRGENLR 268
Score = 55.0 bits (133), Expect = 4e-08
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWL--TTTVDPPHIYAIGFQEL-DLSKEAFLFNETLKEDE 359
I +F+GT+NVNG+S DLS WL + P I IG QE+ +L+ L ++ K
Sbjct: 1 INIFVGTFNVNGKSYKDDLSSWLFPEENDELPDIVVIGLQEVVELTAGQILNSDPSKSSF 60
Query: 360 WLRAVTKSL 368
W + + +L
Sbjct: 61 WEKKIKTTL 69
Score = 31.2 bits (71), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLF 409
+Q+ Y S P L+ SDH+PV + F
Sbjct: 268 RQLSYNSAP-LRFSDHRPVYATF 289
>gnl|CDD|197323 cd09089, INPP5c_Synj, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanins. This
subfamily contains the INPP5c domains of two human
synaptojanins, synaptojanin 1 (Synj1) and synaptojanin 2
(Synj2), and related proteins. It belongs to a family of
Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs). They belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. Synj1 occurs as two main isoforms:
a brain enriched 145 KDa protein (Synj1-145) and a
ubiquitously expressed 170KDa protein (Synj1-170).
Synj1-145 participates in clathrin-mediated endocytosis.
The primary substrate of the Synj1-145 INPP5c domain is
PI(4,5)P2, which it converts to PI4P. Synj1-145 may work
with membrane curvature sensors/generators (such as
endophilin) to remove PI(4,5)P2 from curved membranes.
The recruitment of the INPP5c domain of Synj1-145 to
endophilin-induced membranes leads to a fragmentation
and condensation of these structures. The PI(4,5)P2 to
PI4P conversion may cooperate with dynamin to produce
membrane fission. In addition to this INPP5c domain,
Synjs contain an N-terminal Sac1-like domain; the Sac1
domain can dephosphorylate a variety of
phosphoinositides in vitro. Synj2 can hydrolyze
phosphatidylinositol diphosphate (PIP2) to
phosphatidylinositol phosphate (PIP). Synj2 occurs as
multiple alternative splice variants in various tissues.
These variants share the INPP5c domain and the Sac1
domain. Synj2A is recruited to the mitochondria via its
interaction with OMP25 (a mitochondrial outer membrane
protein). Synj2B is found at nerve terminals in the
brain and at the spermatid manchette in testis. Synj2B
undergoes further alternative splicing to give 2B1 and
2B2. In clathrin-mediated endocytosis, Synj2
participates in the formation of clathrin-coated pits,
and perhaps also in vesicle decoating. Rac1 GTPase
regulates the intracellular localization of Synj2 forms,
but not Synj1. Synj2 may contribute to the role of Rac1
in cell migration and invasion, and is a potential
target for therapeutic intervention in malignant tumors.
Length = 328
Score = 247 bits (633), Expect = 1e-75
Identities = 123/323 (38%), Positives = 168/323 (52%), Gaps = 67/323 (20%)
Query: 1 IQVFIGTWNVNG--QSPSC-----DLSDWLTTTVD--------------PPHIYAIGFQE 39
++VF+GTWNVNG S ++DWL P I+AIGF+E
Sbjct: 1 LRVFVGTWNVNGGKHFRSIAFKHQSMTDWLLDNPKLAGQCSNDSEEDEKPVDIFAIGFEE 60
Query: 40 L-DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVH 98
+ DL+ + T + EW + K++ Y + +LVG+ L VFV A +
Sbjct: 61 MVDLNASNIVSASTTNQKEWGEELQKTISRDHKYVLLTSEQLVGVCLFVFVRPQHAPFIR 120
Query: 99 NVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAI 158
+VA DTV TG +G G GNKG VAI
Sbjct: 121 DVAVDTVKTG-LG------------------------------------GAAGNKGAVAI 143
Query: 159 RLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPK--SIKDHDQIYWLG 216
R LH+TSLCFV SH AA + + RN+DF +I +++F P ++ HD ++W G
Sbjct: 144 RFLLHSTSLCFVCSHFAAGQSQVKERNEDFAEIARKLSF-----PMGRTLDSHDYVFWCG 198
Query: 217 DLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDV 276
D NYRI DL +VK L+ G + +LE DQLT+Q A GNVF G+ EG I+F PTYKYD+
Sbjct: 199 DFNYRI-DLPNDEVKELVRNGDWLKLLEFDQLTKQKAAGNVFKGFLEGEINFAPTYKYDL 257
Query: 277 GTDDWDSSEKNRAPAWCDRVLYK 299
+DD+D+SEK R PAW DRVL++
Sbjct: 258 FSDDYDTSEKCRTPAWTDRVLWR 280
Score = 49.3 bits (118), Expect = 4e-06
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 32/124 (25%)
Query: 303 IQVFIGTWNVNG--QSPSC-----DLSDWLTTTVD--------------PPHIYAIGFQE 341
++VF+GTWNVNG S ++DWL P I+AIGF+E
Sbjct: 1 LRVFVGTWNVNGGKHFRSIAFKHQSMTDWLLDNPKLAGQCSNDSEEDEKPVDIFAIGFEE 60
Query: 342 L-DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVG------IRQQVDYKSV 394
+ DL+ + T + EW + K++ Y + +LVG +R Q
Sbjct: 61 MVDLNASNIVSASTTNQKEWGEELQKTISRDHKYVLLTSEQLVGVCLFVFVRPQH----A 116
Query: 395 PSLK 398
P ++
Sbjct: 117 PFIR 120
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in OCRL1-like proteins. OCRL1 (oculocerebrorenal
syndrome of Lowe 1)-like proteins contain two conserved
domains: a central inositol polyphosphate 5-phosphatase
domain and a C-terminal Rho GAP domain, this GAP domain
lacks the catalytic residue and therefore maybe
inactive. OCRL-like proteins are type II inositol
polyphosphate 5-phosphatases that can hydrolyze lipid
PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and
Ins(1,3,4,5)P4, but their individual specificities vary.
The functionality of the RhoGAP domain is still unclear.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 220
Score = 229 bits (585), Expect = 4e-70
Identities = 106/230 (46%), Positives = 142/230 (61%), Gaps = 16/230 (6%)
Query: 546 FITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWF 605
FITVTG Y S FG S+ETL++L P + +L ++ S S+PKEIW
Sbjct: 1 FITVTGVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVP----LSIPKEIWR 56
Query: 606 LVDHLYRHGLKQQNLFEHPGLPSE----ILLIRNWLDTGSSDPLPGSVHSVAESLLLLLE 661
LVD+LY GL Q+ LFE PGLPSE + IR+ LDTGS PGS SVAE+LLL LE
Sbjct: 57 LVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFNSPGSAESVAEALLLFLE 116
Query: 662 STAEPLIPYNMHPACLTASTS-YVQAKQLI-ASLPLCSRNVYLYLCSFLQELLSHAEENR 719
S +P+IPY+++ L A + +Q+I SLP RNV++YLCSFL+ELLS + +
Sbjct: 117 SLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRG 176
Query: 720 LDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVND 769
LD T+AT+FG++ LRDPPR+ G + + + RK F+ FL+ND
Sbjct: 177 LDENTLATIFGRVLLRDPPRA------GGKERRAERDRKRAFIEQFLLND 220
>gnl|CDD|197328 cd09094, INPP5c_INPP5J-like, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of inositol polyphosphate
5-phosphatase J and related proteins. INPP5c domain of
Inositol polyphosphate-5-phosphatase J (INPP5J), also
known as PIB5PA or PIPP, and related proteins. This
subfamily belongs to a family of Mg2+-dependent inositol
polyphosphate 5-phosphatases, which hydrolyze the
5-phosphate from the inositol ring of various 5-position
phosphorylated phosphoinositides (PIs) and inositol
phosphates (IPs), and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. INPP5J hydrolyzes PI(4,5)P2, I(1,4,5)P3, and
I(1,3,4,5)P4 at ruffling membranes. These proteins
contain a C-terminal, SKIP carboxyl homology domain
(SKICH), which may direct plasma membrane ruffle
localization.
Length = 300
Score = 213 bits (545), Expect = 3e-63
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 42/299 (14%)
Query: 3 VFIGTWNVNGQSPSCDLSDWLTTTVDP--PHIYAIGFQELDLSKEAFLFNETLKEDEWLR 60
V++ TWNV P D+ L P IY IG QE++ F+ + + +D W
Sbjct: 3 VYVVTWNVATAPPPIDVRSLLGLQSPEVAPDIYIIGLQEVNSKPVQFVSD-LIFDDPWSD 61
Query: 61 AVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVA 120
L P Y K+ +RL G++L+VFV+ QH+
Sbjct: 62 LFMDILSP-KGYVKVSSIRLQGLLLLVFVK---IQHL----------------------- 94
Query: 121 IRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE 180
+ +V ++ TG+ G GNKG V +R L+ +CF+N HL AH E+
Sbjct: 95 -----------PFIRDVQTNYTRTGLGGYWGNKGAVTVRFSLYGHMICFLNCHLPAHMEK 143
Query: 181 FERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGKYQ 240
+E+R DF I S F P SI DHD ++W GDLN+RI D+ + V+ L+N+ KY
Sbjct: 144 WEQRIDDFETILSTQVFNECNTP-SILDHDYVFWFGDLNFRIEDVSIEFVRELVNSKKYH 202
Query: 241 TILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYK 299
+LE DQL K F G++EG ++F PTYK+D+GTD++D+S K R PAW DR+L+K
Sbjct: 203 LLLEKDQLNMAKRKEEAFQGFQEGPLNFAPTYKFDLGTDEYDTSGKKRKPAWTDRILWK 261
Score = 38.5 bits (90), Expect = 0.009
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 305 VFIGTWNVNGQSPSCDLSDWLTTTVDP--PHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362
V++ TWNV P D+ L P IY IG QE++ F+ + + +D W
Sbjct: 3 VYVVTWNVATAPPPIDVRSLLGLQSPEVAPDIYIIGLQEVNSKPVQFVSD-LIFDDPWSD 61
Query: 363 AVTKSLHPGAAYQKICLVRLVGIRQQ--VDYKSVPSLK 398
L P Y K+ +RL G+ V + +P ++
Sbjct: 62 LFMDILSP-KGYVKVSSIRLQGLLLLVFVKIQHLPFIR 98
Score = 34.7 bits (80), Expect = 0.15
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 388 QVDYKSVPSLKISDHKPVMSLF 409
Q YKS ISDHKPV + F
Sbjct: 277 QTSYKSHMEYGISDHKPVTAQF 298
>gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanin 2. This
subfamily contains the INPP5c domains of human
synaptojanin 2 (Synj2) and related proteins. It belongs
to a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj2 can hydrolyze phosphatidylinositol
diphosphate (PIP2) to phosphatidylinositol phosphate
(PIP). In addition to this INPP5c domain, these proteins
contain an N-terminal Sac1-like domain; the Sac1 domain
can dephosphorylate a variety of phosphoinositides in
vitro. Synj2 occurs as multiple alternative splice
variants in various tissues. These variants share the
INPP5c domain and the Sac1 domain. Synj2A is recruited
to the mitochondria via its interaction with OMP25, a
mitochondrial outer membrane protein. Synj2B is found at
nerve terminals in the brain and at the spermatid
manchette in testis. Synj2B undergoes further
alternative splicing to give 2B1 and 2B2. In
clathrin-mediated endocytosis, Synj2 participates in the
formation of clathrin-coated pits, and perhaps also in
vesicle decoating. Rac1 GTPase regulates the
intracellular localization of Synj2 forms, but not
Synj1. Synj2 may contribute to the role of Rac1 in cell
migration and invasion, and is a potential target for
therapeutic intervention in malignant tumors.
Length = 336
Score = 189 bits (481), Expect = 5e-54
Identities = 109/319 (34%), Positives = 161/319 (50%), Gaps = 62/319 (19%)
Query: 1 IQVFIGTWNVNGQSP-------SCDLSDWL------TTTVD-------PPHIYAIGFQEL 40
+V +GTWNVNG + +L+DWL + T D PP I+A+GF+E+
Sbjct: 1 TRVAMGTWNVNGGKQFRSNILGTSELTDWLLDSPKLSGTPDFQDDESNPPDIFAVGFEEM 60
Query: 41 -DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHN 99
+LS + T W + K++ Y + +LVG+ L +FV HV
Sbjct: 61 VELSAGNIVNASTTNRKMWGEQLQKAISRSHRYILLTSAQLVGVCLFIFVR---PYHV-- 115
Query: 100 VASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIR 159
+ +VA DTV TG+ GK GNKG VAIR
Sbjct: 116 --------------------------------PFIRDVAIDTVKTGMGGKAGNKGAVAIR 143
Query: 160 LDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLN 219
++TS CF+ SHL A + + RN+D+ +I +++F +++ HD ++W GD N
Sbjct: 144 FQFYSTSFCFICSHLTAGQNQVKERNEDYKEITQKLSFPM---GRNVFSHDYVFWCGDFN 200
Query: 220 YRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTD 279
YRI DL +V I ++ +LE DQL Q + G +F + EG I+F PTYKYDVG++
Sbjct: 201 YRI-DLTYEEVFYFIKRQDWKKLLEFDQLQLQKSSGKIFKDFHEGTINFGPTYKYDVGSE 259
Query: 280 DWDSSEKNRAPAWCDRVLY 298
+D+S+K R PAW DRVL+
Sbjct: 260 AYDTSDKCRTPAWTDRVLW 278
Score = 44.2 bits (104), Expect = 2e-04
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 303 IQVFIGTWNVNGQSP-------SCDLSDW------LTTTVD-------PPHIYAIGFQEL 342
+V +GTWNVNG + +L+DW L+ T D PP I+A+GF+E+
Sbjct: 1 TRVAMGTWNVNGGKQFRSNILGTSELTDWLLDSPKLSGTPDFQDDESNPPDIFAVGFEEM 60
Query: 343 -DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGI 385
+LS + T W + K++ Y + +LVG+
Sbjct: 61 VELSAGNIVNASTTNRKMWGEQLQKAISRSHRYILLTSAQLVGV 104
>gnl|CDD|197332 cd09098, INPP5c_Synj1, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanin 1. This
subfamily contains the INPP5c domains of human
synaptojanin 1 (Synj1) and related proteins. It belongs
to a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj1 occurs as two main isoforms: a brain
enriched 145 KDa protein (Synj1-145) and a ubiquitously
expressed 170KDa protein (Synj1-170). Synj1-145
participates in clathrin-mediated endocytosis. The
primary substrate of the Synj1-145 INPP5c domain is
PI(4,5)P2, which it converts to PI4P. Synj1-145 may work
with membrane curvature sensors/generators (such as
endophilin) to remove PI(4,5)P2 from curved membranes.
The recruitment of the INPP5c domain of Synj1-145 to
endophilin-induced membranes leads to a fragmentation
and condensation of these structures. The PI(4,5)P2 to
PI4P conversion may cooperate with dynamin to produce
membrane fission. In addition to this INPP5c domain,
these proteins contain an N-terminal Sac1-like domain;
the Sac1 domain can dephosphorylate a variety of
phosphoinositides in vitro.
Length = 336
Score = 186 bits (473), Expect = 7e-53
Identities = 113/320 (35%), Positives = 159/320 (49%), Gaps = 62/320 (19%)
Query: 1 IQVFIGTWNVNGQSP-------SCDLSDWLTTT-------------VDPPHIYAIGFQEL 40
I+V +GTWNVNG + L+DWL P I+AIGF+E+
Sbjct: 1 IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKKAGIPEFQDVRSKPVDIFAIGFEEM 60
Query: 41 -DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHN 99
+L+ + T + W + K++ Y + +LVG+ L VF+ A + +
Sbjct: 61 VELNAGNIVSASTTNQKLWAAELQKTISRDQKYVLLASEQLVGVCLFVFIRPQHAPFIRD 120
Query: 100 VASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIR 159
VA DTV TG MG G GNKG VAIR
Sbjct: 121 VAVDTVKTG-MG------------------------------------GATGNKGAVAIR 143
Query: 160 LDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLN 219
+ HTTSLCFV SH AA + + RN+DF +I +++F + + HD ++W GD N
Sbjct: 144 MLFHTTSLCFVCSHFAAGQSQVKERNEDFIEIARKLSFP---MGRMLFSHDYVFWCGDFN 200
Query: 220 YRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTD 279
YRI D+ +VK LI + +++ DQL Q G VF G+ EG + F PTYKYD+ +D
Sbjct: 201 YRI-DIPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKLDFAPTYKYDLFSD 259
Query: 280 DWDSSEKNRAPAWCDRVLYK 299
D+D+SEK R PAW DRVL++
Sbjct: 260 DYDTSEKCRTPAWTDRVLWR 279
Score = 35.4 bits (81), Expect = 0.099
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 303 IQVFIGTWNVNGQSP-------SCDLSDWLTTT-------------VDPPHIYAIGFQEL 342
I+V +GTWNVNG + L+DWL P I+AIGF+E+
Sbjct: 1 IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKKAGIPEFQDVRSKPVDIFAIGFEEM 60
Query: 343 -DLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGI 385
+L+ + T + W + K++ Y + +LVG+
Sbjct: 61 VELNAGNIVSASTTNQKLWAAELQKTISRDQKYVLLASEQLVGV 104
>gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase
[Signal transduction mechanisms].
Length = 460
Score = 179 bits (456), Expect = 5e-49
Identities = 106/313 (33%), Positives = 147/313 (46%), Gaps = 57/313 (18%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWL------TTTVDPPHIYAIGFQE-LDLSKEAFL-FNET 52
+ +F+ T+N G+ P WL T D +Y +G QE ++L+ + L +
Sbjct: 30 VSIFVSTFNPPGKPPKASTKRWLFPEIEATELAD---LYVVGLQEVVELTPGSILSADPY 86
Query: 53 LKEDEWLRAVTKSLHPGAAYQKICLVR---LVGMMLIVFVEENLAQHVHNVASDTVGTGI 109
+ W V L+ + +K L+R L G++L VF V V+ TG
Sbjct: 87 DRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGF 146
Query: 110 MGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCF 169
GG + NKG VAIR + TS CF
Sbjct: 147 -------GGSS------------------------------SNKGAVAIRFNYERTSFCF 169
Query: 170 VNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTK 229
VNSHLAA E R D+ I S I F+ I DHD I+WLGDLNYR+T +
Sbjct: 170 VNSHLAAGVNNIEERIFDYRSIASNICFSR---GLRIYDHDTIFWLGDLNYRVT-STNEE 225
Query: 230 VKNLINA--GKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKN 287
V+ I + G+ + E+DQL + GNVF G+KE I F PTYK+D GTD++D+S+K
Sbjct: 226 VRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDTSDKG 285
Query: 288 RAPAWCDRVLYKG 300
R P+W DR+LYK
Sbjct: 286 RIPSWTDRILYKS 298
Score = 33.2 bits (76), Expect = 0.54
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWL------TTTVDPPHIYAIGFQE 341
+ +F+ T+N G+ P WL T D +Y +G QE
Sbjct: 30 VSIFVSTFNPPGKPPKASTKRWLFPEIEATELAD---LYVVGLQE 71
>gnl|CDD|215624 PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate
5-phosphatase 2; Provisional.
Length = 621
Score = 170 bits (431), Expect = 1e-44
Identities = 81/185 (43%), Positives = 118/185 (63%), Gaps = 11/185 (5%)
Query: 130 LSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAA-HTEEFE-RRNQD 187
L +H++N+ VG G+MG +GNKG V+I + L + LCFV SHL + H + E RRN D
Sbjct: 385 LRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNAD 444
Query: 188 FHDIDSRIAFTGFL---PPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILE 244
++I R F+ L P++I HDQI+W GDLNYR+ LD T+V+ L+ ++ ++
Sbjct: 445 VYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLD-TEVRKLVAQKRWDELIN 503
Query: 245 HDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDW-----DSSEKNRAPAWCDRVLYK 299
DQL ++ G+VF G+KEG I F PTYKY++ +D + EK R+PAWCDR+L+
Sbjct: 504 SDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWL 563
Query: 300 GDGIQ 304
G GI+
Sbjct: 564 GKGIK 568
Score = 49.1 bits (117), Expect = 8e-06
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1 IQVFIGTWNVNGQSPSCDLS--DWLTTTVDPPHIYAIGFQEL 40
I+V IGTWNV G+ PS DL DWL+T +P IY IGFQE+
Sbjct: 108 IRVTIGTWNVAGRLPSEDLEIEDWLSTE-EPADIYIIGFQEV 148
Score = 49.1 bits (117), Expect = 8e-06
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 303 IQVFIGTWNVNGQSPSCDLS--DWLTTTVDPPHIYAIGFQEL 342
I+V IGTWNV G+ PS DL DWL+T +P IY IGFQE+
Sbjct: 108 IRVTIGTWNVAGRLPSEDLEIEDWLSTE-EPADIYIIGFQEV 148
Score = 33.0 bits (75), Expect = 0.63
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 384 GIRQQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRYRK 423
GI+Q YK +++SDH+PV S+F ++ V D + ++
Sbjct: 566 GIKQLC-YKR-SEIRLSDHRPVSSMFLVEVEVFDHRKLQR 603
>gnl|CDD|197329 cd09095, INPP5c_INPP5E-like, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of Inositol
polyphosphate-5-phosphatase E and related proteins.
INPP5c domain of Inositol polyphosphate-5-phosphatase E
(also called type IV or 72 kDa 5-phosphatase), rat
pharbin, and related proteins. This subfamily belongs to
a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. INPP5E hydrolyzes the 5-phosphate from PI(3,5)P2,
PI(4,5)P2 and PI(3,4,5)P3, forming PI3P, PI4P, and
PI(3,4)P2, respectively. It is a very potent PI(3,4,5)P3
5-phosphatase. Its intracellular localization is chiefly
cytosolic, with pronounced perinuclear/Golgi
localization. INPP5E also has an N-terminal proline rich
domain (PRD) and a C-terminal CAAX motif. This protein
is expressed in a variety of tissues, including the
breast, brain, testis, and haemopoietic cells. It is
differentially expressed in several cancers, for
example, it is up-regulated in cervical cancer and
down-regulated in stomach cancer. It is a candidate
target for therapeutics of obesity and related
disorders, as it is expressed in the hypothalamus, and
following insulin stimulation, it undergoes tyrosine
phosphorylation, associates with insulin receptor
substrate-1, -2, and PI3-kinase, and become active as a
5-phosphatase. INPP5E may play a role, along with other
5-phosphatases SHIP2 and SKIP, in regulating glucose
homoeostasis and energy metabolism. Mice deficient in
INPPE5 develop a multi-organ disorder associated with
structural defects of the primary cilium.
Length = 298
Score = 156 bits (396), Expect = 1e-42
Identities = 91/314 (28%), Positives = 140/314 (44%), Gaps = 67/314 (21%)
Query: 1 IQVFIGTWNVNGQ-SPSCDLSDW-LTTTVD-PPHIYAIGFQELDLSKEAFLFNETLKEDE 57
+ +F+ TWN+ GQ +L D+ L T+ D IY IG QE + E
Sbjct: 5 VGIFVATWNMQGQKELPENLDDFLLPTSADFAQDIYVIGVQEGCSDRR-----------E 53
Query: 58 WLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKG 117
W +RL +E L + S + G +
Sbjct: 54 W------------------EIRL---------QETLGPSHVLLHSASHGVLHL------- 79
Query: 118 GVAIRLDL-HTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAA 176
V IR DL S + TV T I+ ++ KG +AI TS F+ SH +
Sbjct: 80 AVFIRRDLIWFCSEVES------ATVTTRIVSQIKTKGALAISFTFFGTSFLFITSHFTS 133
Query: 177 HTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDH--------DQIYWLGDLNYRITDLDLT 228
+ + R D++ I + +P K D+++W GD N+R+
Sbjct: 134 GDGKVKERVLDYNKIIQALNLPRNVPTNPYKSESGDVTTRFDEVFWFGDFNFRL-SGPRH 192
Query: 229 KVKNLINAGKYQTI---LEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSE 285
V LIN G+ + L+HDQLTR+ +KG++F G++E IHF PTYK+D+G+D +D+S
Sbjct: 193 LVDALINQGQEVDVSALLQHDQLTREMSKGSIFKGFQEAPIHFPPTYKFDIGSDVYDTSS 252
Query: 286 KNRAPAWCDRVLYK 299
K R P++ DR+LY+
Sbjct: 253 KQRVPSYTDRILYR 266
Score = 37.0 bits (86), Expect = 0.027
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 303 IQVFIGTWNVNGQ-SPSCDLSDW-LTTTVD-PPHIYAIGFQE 341
+ +F+ TWN+ GQ +L D+ L T+ D IY IG QE
Sbjct: 5 VGIFVATWNMQGQKELPENLDDFLLPTSADFAQDIYVIGVQE 46
Score = 33.6 bits (77), Expect = 0.34
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 389 VDYKSVPSLKISDHKPVMSLFNS 411
+ Y S PS+K SDH+PV +LF
Sbjct: 276 LKYNSCPSIKTSDHRPVFALFRV 298
>gnl|CDD|197335 cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of SH2 domain containing
inositol 5-phosphatase-2 and related proteins. This
subfamily contains the INPP5c domain of SHIP2 (SH2
domain containing inositol 5-phosphatase-2, also called
INPPL1) and related proteins. It belongs to a family of
Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), and to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. SHIP2 catalyzes the dephosphorylation of the PI,
phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3],
to phosphatidylinositol 3,4-bisphosphate [PI(3,4)P2].
SHIP2 is widely expressed, most prominently in brain,
heart and in skeletal muscle. SHIP2 is an inhibitor of
the insulin signaling pathway. It is implicated in actin
structure remodeling, cell adhesion and cell spreading,
receptor endocytosis and degradation, and in the
JIP1-mediated JNK pathway. Its interacting partners
include filamin/actin, p130Cas, Shc, Vinexin,
Interesectin 1, and c-Jun NH2-terminal kinase
(JNK)-interacting protein 1 (JIP1). A large variety of
extracellular stimuli appear to lead to the tyrosine
phosphorylation of SHIP2, including epidermal growth
factor (EGF), platelet-derived growth factor (PDGF),
insulin, macrophage colony-stimulating factor (M-CSF)
and hepatocyte growth factor (HGF). SHIP2 is localized
to the cytosol in quiescent cells; following growth
factor stimulation and /or cell adhesion, it relocalizes
to membrane ruffles. In addition to this INPP5c domain,
SHIP2 has an N-terminal SH2 domain, a C-terminal
proline-rich domain (PRD), which includes a WW-domain
binding motif (PPLP), an NPXY motif and a sterile alpha
motif (SAM) domain. The gene encoding SHIP2 is a
candidate for conferring a predisposition for type 2
diabetes; it has been suggested that suppression of
SHIP2 may be of benefit in the treatment of obesity and
thereby prevent type 2 diabetes. SHIP2 and SHIP1 have
little overlap in their in vivo functions.
Length = 304
Score = 143 bits (363), Expect = 4e-38
Identities = 100/325 (30%), Positives = 148/325 (45%), Gaps = 79/325 (24%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLT----------TTVDPPH-IYAIGFQELDLSKEAFLF 49
I +FIGTWN+ P L+ WLT TTV PH IY G QE
Sbjct: 1 ISIFIGTWNMGSVPPPKSLASWLTSRGLGKTLDETTVTIPHDIYVFGTQE---------- 50
Query: 50 NETLKEDEWLRAVTKSLHPGAA--YQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGT 107
++ + EW+ + SL YQ I L L + ++V V+ +H + ++
Sbjct: 51 -NSVGDREWVDFLRASLKELTDIDYQPIALQCLWNIKMVVLVK---PEHENRIS------ 100
Query: 108 GIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSL 167
HVH + +V TGI LGNKG V + + TS
Sbjct: 101 -------------------------HVH---TSSVKTGIANTLGNKGAVGVSFMFNGTSF 132
Query: 168 CFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHD------QIYWLGDLNYR 221
FVN HL + E+ RRNQ++ DI ++ L K + D ++W GDLNYR
Sbjct: 133 GFVNCHLTSGNEKTHRRNQNYLDILRSLS----LGDKQLNAFDISLRFTHLFWFGDLNYR 188
Query: 222 ITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDW 281
+ D+D+ ++ N I ++ +L DQL + K VFL ++E I F PTY+Y+ G+ D
Sbjct: 189 L-DMDIQEILNYITRKEFDPLLAVDQLNLEREKNKVFLRFREEEISFPPTYRYERGSRDT 247
Query: 282 DSSEKNRA-------PAWCDRVLYK 299
+K + P+WCDR+L+K
Sbjct: 248 YMWQKQKTTGMRTNVPSWCDRILWK 272
Score = 40.0 bits (93), Expect = 0.003
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLT----------TTVDPPH-IYAIGFQELDLSKEAFLF 351
I +FIGTWN+ P L+ WLT TTV PH IY G QE
Sbjct: 1 ISIFIGTWNMGSVPPPKSLASWLTSRGLGKTLDETTVTIPHDIYVFGTQE---------- 50
Query: 352 NETLKEDEWLRAVTKSLHPGAA--YQKICLVRLVGIRQQVDYKSVPSLKIS 400
++ + EW+ + SL YQ I L L I+ V K +IS
Sbjct: 51 -NSVGDREWVDFLRASLKELTDIDYQPIALQCLWNIKMVVLVKPEHENRIS 100
>gnl|CDD|197325 cd09091, INPP5c_SHIP, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of SH2 domain containing
inositol polyphosphate 5-phosphatase-1 and -2, and
related proteins. This subfamily contains the INPP5c
domain of SHIP1 (SH2 domain containing inositol
polyphosphate 5-phosphatase-1, also known as
SHIP/INPP5D), and SHIP2 (also known as INPPL1). It
belongs to a family of Mg2+-dependent inositol
polyphosphate 5-phosphatases, which hydrolyze the
5-phosphate from the inositol ring of various 5-position
phosphorylated phosphoinositides (PIs) and inositol
phosphates (IPs), and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Both SHIP1 and -2 catalyze the dephosphorylation
of the PI, phosphatidylinositol 3,4,5-trisphosphate
[PI(3,4,5)P3], to phosphatidylinositol 3,4-bisphosphate
[PI(3,4)P2]. SHIP1 also converts inositol-1,3,4,5-
polyphosphate [I(1,3,4,5)P4] to
inositol-1,3,4-polyphosphate [I(1,3,4)P3]. SHIP1 and
SHIP2 have little overlap in their in vivo functions.
SHIP1 is a negative regulator of cell growth and plays a
major part in mediating the inhibitory signaling in B
cells; it is predominantly expressed in hematopoietic
cells. SHIP2 is as an inhibitor of the insulin signaling
pathway, and is implicated in actin structure
remodeling, cell adhesion and cell spreading, receptor
endocytosis and degradation, and in the JIP1-mediated
JNK pathway. SHIP2 is widely expressed, most
prominently in brain, heart and in skeletal muscle. In
addition to this INPP5c domain, SHIP1 has an N-terminal
SH2 domain, two NPXY motifs, and a C-terminal
proline-rich region (PRD), while SHIP2 has an N-terminal
SH2 domain, a C-terminal proline-rich domain (PRD),
which includes a WW-domain binding motif (PPLP), an NPXY
motif, and a sterile alpha motif (SAM) domain. The gene
encoding SHIP2 is a candidate gene for conferring a
predisposition for type 2 diabetes.
Length = 307
Score = 139 bits (352), Expect = 1e-36
Identities = 95/328 (28%), Positives = 149/328 (45%), Gaps = 82/328 (25%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLT----------TTVDPPH-IYAIGFQELDLSKEAFLF 49
I +FIGTWN+ P +++ W T PH IY IG QE
Sbjct: 1 ISIFIGTWNMGSAPPPKNITSWFTSKGQGKTRDDVADYIPHDIYVIGTQE---------- 50
Query: 50 NETLKEDEWLRAVTKSLH--PGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGT 107
+ L E EWL + SL Y+ I + L + ++V + +H + ++
Sbjct: 51 -DPLGEKEWLDLLRHSLKELTSLDYKPIAMQTLWNIRIVVLAK---PEHENRIS------ 100
Query: 108 GIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSL 167
+V + +V TGI LGNKG V + + TS
Sbjct: 101 ----------------------------HVCTSSVKTGIANTLGNKGAVGVSFMFNGTSF 132
Query: 168 CFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHD------QIYWLGDLNYR 221
FVNSHL + +E+ RRNQ++ +I ++ L K + + ++WLGDLNYR
Sbjct: 133 GFVNSHLTSGSEKKLRRNQNYLNILRFLS----LGDKKLSAFNITHRFTHLFWLGDLNYR 188
Query: 222 ITDLDLTKVKNLIN---AGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGT 278
+ DL + + +N+I +++ +L HDQL + + VFL + E I F PTY+Y+ G+
Sbjct: 189 L-DLPIQEAENIIQKIEQQQFEPLLRHDQLNLEREEHKVFLRFSEEEITFPPTYRYERGS 247
Query: 279 DDWDSSEKNRA-------PAWCDRVLYK 299
D + K +A P+WCDR+L+K
Sbjct: 248 RDTYAYTKQKATGVKYNLPSWCDRILWK 275
Score = 39.2 bits (91), Expect = 0.006
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLT----------TTVDPPH-IYAIGFQELDLSKEAFLF 351
I +FIGTWN+ P +++ W T PH IY IG QE
Sbjct: 1 ISIFIGTWNMGSAPPPKNITSWFTSKGQGKTRDDVADYIPHDIYVIGTQE---------- 50
Query: 352 NETLKEDEWLRAVTKSLH--PGAAYQKICLVRLVGIRQQVDYKSVPSLKIS 400
+ L E EWL + SL Y+ I + L IR V K +IS
Sbjct: 51 -DPLGEKEWLDLLRHSLKELTSLDYKPIAMQTLWNIRIVVLAKPEHENRIS 100
>gnl|CDD|197334 cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of SH2 domain containing
inositol polyphosphate 5-phosphatase-1 and related
proteins. This subfamily contains the INPP5c domain of
SHIP1 (SH2 domain containing inositol polyphosphate
5-phosphatase-1, also known as SHIP/INPP5D) and related
proteins. It belongs to a family of Mg2+-dependent
inositol polyphosphate 5-phosphatases, which hydrolyze
the 5-phosphate from the inositol ring of various
5-position phosphorylated phosphoinositides (PIs) and
inositol phosphates (IPs), and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. SHIP1's enzymic activity is restricted to
phosphatidylinositol 3,4,5-trisphosphate [PI (3,4,5)P3]
and inositol-1,3,4,5- polyphosphate [I(1,3,4,5)P4]. It
converts these two phosphoinositides to
phosphatidylinositol 3,4-bisphosphate [PI (3,4)P2] and
inositol-1,3,4-polyphosphate [I(1,3,4)P3], respectively.
SHIP1 is a negative regulator of cell growth and plays a
major part in mediating the inhibitory signaling in B
cells; it is predominantly expressed in hematopoietic
cells. In addition to this INPP5c domain, SHIP1 has an
N-terminal SH2 domain, two NPXY motifs, and a C-terminal
proline-rich region (PRD). SHIP1's phosphorylated NPXY
motifs interact with proteins with phosphotyrosine
binding (PTB) domains, and facilitate the translocation
of SHIP1 to the plasma membrane to hydrolyze
PI(3,4,5)P3. SHIP1 generally acts to oppose the activity
of phosphatidylinositol 3-kinase (PI3K). It acts as a
negative signaling molecule, reducing the levels of
PI(3,4,5)P3, thereby removing the latter as a
membrane-targeting signal for PH domain-containing
effector molecules. SHIP1 may also, in certain contexts,
amplify PI3K signals. SHIP1 and SHIP2 have little
overlap in their in vivo functions.
Length = 307
Score = 137 bits (346), Expect = 8e-36
Identities = 98/324 (30%), Positives = 150/324 (46%), Gaps = 74/324 (22%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTT---------TVD--PPHIYAIGFQELDLSKEAFLF 49
I +FIGTWN+ P ++ W T D P IY IG QE
Sbjct: 1 ITIFIGTWNMGNAPPPKKITSWFQCKGQGKTRDDTADYIPHDIYVIGTQE---------- 50
Query: 50 NETLKEDEWLRAVTKSLH--PGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGT 107
+ L E EWL + SL +++ I + L + ++V + +H + ++
Sbjct: 51 -DPLGEKEWLDTLKHSLREITSISFKVIAIQTLWNIRIVVLAK---PEHENRIS------ 100
Query: 108 GIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSL 167
++ +D+V TGI LGNKG V + + TS
Sbjct: 101 ----------------------------HICTDSVKTGIANTLGNKGAVGVSFMFNGTSF 132
Query: 168 CFVNSHLAAHTEEFERRNQDFHDIDSRIAF-TGFLPPKSIKDH-DQIYWLGDLNYRITDL 225
FVNSHL + +E+ RRNQ++ +I + L P +I ++WLGDLNYR+ +L
Sbjct: 133 GFVNSHLTSGSEKKLRRNQNYFNILRFLVLGDKKLSPFNITHRFTHLFWLGDLNYRV-EL 191
Query: 226 DLTKVKNLINAGK---YQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWD 282
T+ +N+I K YQ +L HDQL + + VFL ++E I F PTY+++ GT +
Sbjct: 192 PNTEAENIIQKIKQQQYQELLPHDQLLIERKESKVFLQFEEEEITFAPTYRFERGTRERY 251
Query: 283 SSEKNRA-------PAWCDRVLYK 299
+ K +A P+WCDRVL+K
Sbjct: 252 AYTKQKATGMKYNLPSWCDRVLWK 275
Score = 39.6 bits (92), Expect = 0.005
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTT---------TVD--PPHIYAIGFQELDLSKEAFLF 351
I +FIGTWN+ P ++ W T D P IY IG QE L ++ +L
Sbjct: 1 ITIFIGTWNMGNAPPPKKITSWFQCKGQGKTRDDTADYIPHDIYVIGTQEDPLGEKEWL- 59
Query: 352 NETLKEDEWLRAVTKSLHPGAAYQKICLVRLV 383
+TLK LR +T A Q + +R+V
Sbjct: 60 -DTLKHS--LREITSISFKVIAIQTLWNIRIV 88
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases.
GTPase activator proteins towards Rho/Rac/Cdc42-like
small GTPases. etter domain limits and outliers.
Length = 174
Score = 103 bits (258), Expect = 2e-25
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTG---SSDPLPGSVHSVAE 654
+P + +++L + GL + ++ G S + +R+ D+G D VH VA
Sbjct: 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAG 61
Query: 655 SLLLLLESTAEPLIPYNMHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFL 708
L L L EPLI Y ++ + A+ ++L++ LP +R YL + L
Sbjct: 62 LLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHL 121
Query: 709 QELLSHAEENRLDAKTIATLFGQIFLRDPP 738
+ H+EEN++ A+ +A +FG LR P
Sbjct: 122 NRVAEHSEENKMTARNLAIVFGPTLLRPPD 151
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain. GTPase activator proteins
towards Rho/Rac/Cdc42-like small GTPases.
Length = 152
Score = 92.6 bits (231), Expect = 5e-22
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 600 PKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGS---SDPLPGSVHSVAESL 656
P + V+ L + GL + +F G S I +R D+G D VH VA L
Sbjct: 1 PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60
Query: 657 LLLLESTAEPLIPYNMHPACLTASTS-----YVQA-KQLIASLPLCSRNVYLYLCSFLQE 710
L L EPL+ + ++ + A+ S V+A ++L+ LP +R+ YL + L
Sbjct: 61 KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120
Query: 711 LLSHAEENRLDAKTIATLFGQIFLRDPPRSRD 742
+ ++E N+++A +A +FG LR P D
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPPDDESD 152
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for
Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small
GTPases. Small GTPases (G proteins) cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when bound
to GDP. The Rho family of small G proteins, which
includes Cdc42Hs, activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. G proteins generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude. The
RhoGAPs are one of the major classes of regulators of
Rho G proteins.
Length = 169
Score = 83.9 bits (208), Expect = 8e-19
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 600 PKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTG--SSDPLPGSVHSVAESLL 657
P I +++L ++GL + +F G S+I ++ D G D VH VA L
Sbjct: 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLK 60
Query: 658 LLLESTAEPLIPYNMHPACLTASTSYV------QAKQLIASLPLCSRNVYLYLCSFLQEL 711
L L EPLIP+ ++ + + K+L+ SLP +R++ YL L ++
Sbjct: 61 LYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKI 120
Query: 712 LSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQ 752
++E N++ A +A +F LR P + K +
Sbjct: 121 SQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKLNE 161
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 74.8 bits (184), Expect = 3e-15
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 607 VDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS--VHSVAESLLLLLESTA 664
VD + HGLK++ LF PG + + +++ D G VH+VA L L L
Sbjct: 30 VDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELP 89
Query: 665 EPLIPYNMHPACLTAS--------TSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAE 716
EP+IP+ + L+ + + + ++ LP + N+ Y+C FL E+ S++
Sbjct: 90 EPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSS 149
Query: 717 ENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQA 755
N++ + +AT+FG LR P+ DP+ + Q Q
Sbjct: 150 VNKMSVQNLATVFGPNILR--PKVEDPATIMEGTPQIQQ 186
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 74.4 bits (183), Expect = 3e-15
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 581 IELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTG 640
+ L+ + +G N VP + +V++L +HGL+Q+ LF G + +R LD+G
Sbjct: 5 VPLQELQQAGQPEN---GVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSG 61
Query: 641 SSDPL--PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYV-------QAKQLIA 691
L V S A L L L+ E LIP ++ + Y + + L+
Sbjct: 62 EEVDLSKEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ 121
Query: 692 SLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFG 730
LP + ++ +LC FL + S ENR+ A+ +A +FG
Sbjct: 122 QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
(GAP) domain for Rho-like GTPases found in KIAA1688-like
proteins; KIAA1688 is a protein of unknown function that
contains a RhoGAP domain and a myosin tail homology 4
(MyTH4) domain. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 187
Score = 63.9 bits (156), Expect = 1e-11
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 605 FLVDHLYRHGLKQ-QNLFEHPGLPSEILLIRNWLDTGSSDPLP-GSVHSVAESLLLLLES 662
FL + + G Q + +F PG E+ ++ +D H A L L L
Sbjct: 27 FLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRE 86
Query: 663 TAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELL--SHAEENRL 720
EPLIP ++ C++AS +A +++ LP+ +R V YL +FLQ + ++
Sbjct: 87 LEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKM 146
Query: 721 DAKTIATLFGQIFLR---DPPR 739
D +A +F LR D PR
Sbjct: 147 DVSNLAMVFAPNILRCTSDDPR 168
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 63.2 bits (154), Expect = 2e-11
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 20/156 (12%)
Query: 612 RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG-----SVHSVAESLLLLLESTAEP 666
+GL+ Q +F G E+ I+N + G DPL ++SVA L L P
Sbjct: 31 LYGLQHQGIFRVSGSQVEVNDIKNAFERGE-DPLADDQNDHDINSVAGVLKLYFRGLENP 89
Query: 667 LIP---YNMHPACLTASTSY---VQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRL 720
L P + +C+ Q ++++++LP V YL +FL L ++EN +
Sbjct: 90 LFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMM 149
Query: 721 DAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQAR 756
D +A FG + P G+ Q QA
Sbjct: 150 DPYNLAICFGPTLMPVP--------EGQDQVSCQAH 177
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of Bcr
(breakpoint cluster region protein)-like proteins. Bcr
is a multidomain protein with a variety of enzymatic
functions. It contains a RhoGAP and a Rho GEF domain, a
Ser/Thr kinase domain, an N-terminal oligomerization
domain, and a C-terminal PDZ binding domain, in addition
to PH and C2 domains. Bcr is a negative regulator of:
i) RacGTPase, via the Rho GAP domain, ii) the
Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras
binding protein AF-6, and iii) the Wnt signaling pathway
through binding beta-catenin. Bcr can form a complex
with beta-catenin and Tcf1. The Wnt signaling pathway
is involved in cell proliferation, differentiation, and
cell renewal. Bcr was discovered as a fusion partner of
Abl. The Bcr-Abl fusion is characteristic for a large
majority of chronic myelogenous leukemias (CML). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 196
Score = 56.5 bits (136), Expect = 5e-09
Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 586 SKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL 645
+ T S VP + V+ + R G+++ ++ G+ ++I ++ DT + D
Sbjct: 4 KISTVTKRERS-KVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVS 62
Query: 646 ----PGSVHSVAESLLLLLESTAEPLIPYNMHPA---CLTASTSYVQAK---QLIASLPL 695
V+++A +L L EPL ++P + S + L+ SLP
Sbjct: 63 VMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPD 122
Query: 696 CSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDP-PRSRDPSARGKSQTQTQ 754
+ +L+L L+ + E N++ +AT+FG LR S+ P+ +
Sbjct: 123 PNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNTMTDSWSLE 182
Query: 755 ARRKANFVYHFLVN 768
+ + +FL
Sbjct: 183 VMSQVQVLLYFLQL 196
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
Nadrin-like proteins. Nadrin, also named Rich-1, has
been shown to be involved in the regulation of
Ca2+-dependent exocytosis in neurons and recently has
been implicated in tight junction maintenance in
mammalian epithelium. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 53.2 bits (128), Expect = 7e-08
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 607 VDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLP----GSVHSVAESLLLLLES 662
V L G+ ++ LF G S++ ++ LD G+ H+VA +L L
Sbjct: 28 VMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRE 87
Query: 663 TAEPLIPYNMHPACLTASTSYVQAKQL------IASLPLCSRNVYLYLCSFLQELLSHAE 716
+PL+ YN++ + A+ + ++L + LP +R+ YL FL +L ++
Sbjct: 88 LPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSD 147
Query: 717 ENRLDAKTIATLFG 730
EN++ IA +
Sbjct: 148 ENKMSPSNIAIVLA 161
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 187
Score = 52.8 bits (127), Expect = 9e-08
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR---------NWLDTGSSDPLPGS 648
+VPK + ++ + + GL ++ G + I +R + D+ D
Sbjct: 15 TVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWED----- 69
Query: 649 VHSVAESLLLLLESTAEPLIPYNMHPACLTA-----STSYVQA-KQLIASLPLCSRNVYL 702
+H + +L L EPL PY++ + A V A K LI SLP + +
Sbjct: 70 IHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLK 129
Query: 703 YLCSFLQELLSHAEENRLDAKTIATLFGQIFLR 735
L L ++ H E+NR+ + +A +FG LR
Sbjct: 130 MLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLR 162
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP6-like proteins. ArhGAP6 shows GAP activity
towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is
often deleted in microphthalmia with linear skin defects
syndrome (MLS); MLS is a severe X-linked developmental
disorder. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 206
Score = 52.4 bits (126), Expect = 1e-07
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 18/156 (11%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG--SVHSVAES 655
VP+ + HL +HGL+ +F + +R D G L SVH VA
Sbjct: 8 QVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAAL 67
Query: 656 LLLLLESTAEPLIPYNMHPACLTASTSYVQA-----KQLIASLPLCSRNVYLYLCSFLQE 710
L +PL+P ++ A + + + LI LP C+ + L FL
Sbjct: 68 LKEFFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHT 127
Query: 711 LLSHAEE-----------NRLDAKTIATLFGQIFLR 735
+ HA + N++ + +AT+FG L
Sbjct: 128 VAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of ArhGAP11A-like proteins. The mouse
homolog of human ArhGAP11A has been detected as a gene
exclusively expressed in immature ganglion cells,
potentially playing a role in retinal development. The
exact function of ArhGAP11A is unknown. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 202
Score = 50.5 bits (121), Expect = 5e-07
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 605 FLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGS---SDPLPGSVHSVAESLLLLLE 661
FL+DHL GL F G ++ L+ G S LP V A L
Sbjct: 30 FLLDHLSTEGL-----FRKSGSVVRQKELKAKLEGGEACLSSALPCDV---AGLLKQFFR 81
Query: 662 STAEPLIPYNMHPACLTA----STSYVQAKQLIAS--LPLCSRNVYLYLCSFLQELLSHA 715
EPL+PY++H A L A + ++ L+ + LP N Y SFL ++
Sbjct: 82 ELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRC 141
Query: 716 EENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFV 762
EN++D+ +A +F +S + + S T+ + R +A V
Sbjct: 142 SENKMDSSNLAVIFAPNLF----QSEEGGEKMSSSTEKRLRLQAAVV 184
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily. This large superfamily includes the
catalytic domain (exonuclease/endonuclease/phosphatase
or EEP domain) of a diverse set of proteins including
the ExoIII family of apurinic/apyrimidinic (AP)
endonucleases, inositol polyphosphate 5-phosphatases
(INPP5), neutral sphingomyelinases (nSMases),
deadenylases (such as the vertebrate circadian-clock
regulated nocturnin), bacterial cytolethal distending
toxin B (CdtB), deoxyribonuclease 1 (DNase1), the
endonuclease domain of the non-LTR retrotransposon
LINE-1, and related domains. These diverse enzymes share
a common catalytic mechanism of cleaving phosphodiester
bonds; their substrates range from nucleic acids to
phospholipids and perhaps proteins.
Length = 241
Score = 47.1 bits (112), Expect = 1e-05
Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 38/234 (16%)
Query: 95 QHVHNVASDTVGTGIMGKLGNKGGVAIRLDL--HTTSL---SQHVHNVASDTVGTGIMGK 149
Q V + V + G + + + G
Sbjct: 33 QEVKDSQYSAVALNQLLPEGYHQYQSGPSRKEGYEGVAILSKTPKFKIVEKHQYKFGEGD 92
Query: 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDH 209
G + V ++ D+H LC VN+HL A + R + + F L +
Sbjct: 93 SGERRAVVVKFDVHDKELCVVNAHLQAGGTRADVR---DAQLKEVLEFLKRLRQPN---S 146
Query: 210 DQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFR 269
+ GD N R +++D +++ + V L +
Sbjct: 147 APVVICGDFNVRPSEVDSENPSSML-------------------RLFVALNLVD------ 181
Query: 270 PTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSD 323
+++ +D+ N + D + + + ++ + + SD
Sbjct: 182 -SFETLPHAYTFDTYMHN-VKSRLDYIFVSKSLLPSVKSSKILSDAARARIPSD 233
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of the
Ras small GTPase superfamily, through the N-terminal
half of the protein. GMIP contains a C-terminal RhoGAP
domain. GMIP inhibits RhoA function, but is inactive
towards Rac1 and Cdc41. PARG1 interacts with Rap2, also
a member of the Ras small GTPase superfamily whose exact
function is unknown, and shows strong preference for
Rho. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 203
Score = 45.9 bits (109), Expect = 2e-05
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 20/129 (15%)
Query: 648 SVHSVAESLLLLLESTAEPLIPYNMHPA--------------------CLTASTSYVQAK 687
S H ++ L L L EPLI + ++ + + + K
Sbjct: 67 SPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLK 126
Query: 688 QLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARG 747
L+ LP + N +L + L + EEN++ + +FG +R P D S
Sbjct: 127 DLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSS 186
Query: 748 KSQTQTQAR 756
QAR
Sbjct: 187 LVDYGYQAR 195
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP18-like proteins. The function of ArhGAP18 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 216
Score = 45.8 bits (109), Expect = 2e-05
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 20/189 (10%)
Query: 575 VALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634
V L L+E + K G+ VP L++ L GL+ + + PG + +
Sbjct: 4 VPLSTLLERDQKKVPGSK------VPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLC 57
Query: 635 NWLDT----GSSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPA---CLTASTSYVQAK 687
L+ G+ H A L L + +PL+ PA + Q +
Sbjct: 58 QELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQ 117
Query: 688 QL---IASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFG-QIFLRDPPRSRDP 743
L + LP +R+ L FLQ+++ H E+N+++ +A + +F PPR +
Sbjct: 118 ALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLF---PPRGKHS 174
Query: 744 SARGKSQTQ 752
Q +
Sbjct: 175 KDNESLQEE 183
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 44.3 bits (105), Expect = 6e-05
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL----PGSVHSVA 653
+P + V++L H L + +F + ++ + G +P+ VH A
Sbjct: 22 PIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMG--EPVDFDQYEDVHLPA 79
Query: 654 ESLLLLLESTAEPLIPYNMHPACLT----ASTSYVQA-KQLIASLPLCSRNVYLYLCSFL 708
L L EPL+ ++++ + V+ KQL+ +LP + V YL FL
Sbjct: 80 VILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFL 139
Query: 709 QELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSA 745
++ +H+++N++ +A +FG L S SA
Sbjct: 140 VQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSLSA 176
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP]
protein for Rho-like small GTPases) domain of fungal
BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and
is specifically involved in the control of the initial
assembly of the septin ring in yeast bud formation.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 190
Score = 42.0 bits (99), Expect = 3e-04
Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 582 ELESSKDSGTLSNTSYSVPKEIWFLVDHLY-RHGLKQQNLFEHPGLPSEILLIRNWLDTG 640
LE + + + +P ++ +++L + ++ +F G S I ++ +T
Sbjct: 5 PLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTE 64
Query: 641 S-----SDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAS---TSYVQA----KQ 688
S L VH+VA L L L ++ +H Q K
Sbjct: 65 YDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKD 124
Query: 689 LIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLF 729
L++ LP + ++ L SFL++++ H++ N+++ + + +F
Sbjct: 125 LVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVF 165
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein
for Rho3 and Rho4 and plays a role in low-pH response.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 41.6 bits (98), Expect = 5e-04
Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 24/179 (13%)
Query: 575 VALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634
V L LI E +VP ++ + + GL + ++ G S + ++
Sbjct: 3 VPLEDLILREGD-----------NVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLK 51
Query: 635 NWLDT--GSSDPLPGS-----VHSVAESLLLLLESTAEPLIPYNMHPACLTA------ST 681
D + + +HSVA L L EPL+ + + A S
Sbjct: 52 ELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESR 111
Query: 682 SYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRS 740
LI LP + L L + H NR+ +A ++G + P +
Sbjct: 112 RRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDN 170
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of chimaerins. Chimaerins are a family
of phorbolester- and diacylglycerol-responsive GAPs
specific for the Rho-like GTPase Rac. Chimaerins exist
in two alternative splice forms that each contain a
C-terminal GAP domain, and a central C1 domain which
binds phorbol esters, inducing a conformational change
that activates the protein; one splice form is lacking
the N-terminal Src homology-2 (SH2) domain. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 194
Score = 41.0 bits (96), Expect = 8e-04
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 614 GLKQQNLFEHPGLPSEILLIRNWLD-----TGSSDPLPGSVHSVAESLLLLLESTAEPLI 668
GL+ + L+ G EI ++ D S + ++ + +L L P+I
Sbjct: 31 GLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVI 90
Query: 669 PYNMHPACLTASTSYVQAKQLIA------SLPLCSRNVYLYLCSFLQELLSHAEENRLDA 722
Y+ +P + A+ ++L A LP YL L+ + H ++N+++A
Sbjct: 91 TYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNA 150
Query: 723 KTIATLFGQIFLRDP 737
+ + +FG +R P
Sbjct: 151 ENLGIVFGPTLMRPP 165
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 40.5 bits (95), Expect = 0.001
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 590 GTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSS----DPL 645
+L++ SVP + L++H+ HGL + ++ G ++I +R LDT +
Sbjct: 6 SSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDY 65
Query: 646 PGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQ--------LIASLPLCS 697
P +H + L L EPL+ + ++ L A ++ KQ ++ LP +
Sbjct: 66 P--IHVITSVLKQWLRELPEPLMTFELYENFLRAME--LEEKQERVRALYSVLEQLPRAN 121
Query: 698 RNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP 743
N L L + E NR+ A +A +F LR P + DP
Sbjct: 122 LNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR-CPDTADP 166
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
ARAPs. ARAPs (also known as centaurin deltas) contain,
besides the RhoGAP domain, an Arf GAP, ankyrin repeat
ras-associating, and PH domains. Since their ArfGAP
activity is PIP3-dependent, ARAPs are considered
integration points for phosphoinositide, Arf and Rho
signaling. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 184
Score = 40.4 bits (95), Expect = 0.001
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 595 TSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEI--LL--IRNWLDTGSSDPLPG--S 648
T +P + +D + +HGL + ++ G S + LL R D S G +
Sbjct: 11 TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRK--DARSVQLREGEYT 68
Query: 649 VHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQA------KQLIASLPLCSRNVYL 702
VH VA+ L L +PL+ +H + A+ + K+LI LP +R
Sbjct: 69 VHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLK 128
Query: 703 YLCSFLQELLSHAEENRLDAKTIATLFG 730
L L + H++EN++ +A +FG
Sbjct: 129 VLIGHLYRVQKHSDENQMSVHNLALVFG 156
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally
cloned as an interaction partner of PTPL1, an
intracellular protein-tyrosine phosphatase. PARG1
interacts with Rap2, also a member of the Ras small
GTPase superfamily whose exact function is unknown, and
shows strong preference for Rho. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 211
Score = 40.6 bits (95), Expect = 0.001
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 648 SVHSVAESLLLLLESTAEPLIPYNMHPA----------------------------CLTA 679
S H ++ L L L EPLI + ++ C
Sbjct: 67 SPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTEL 126
Query: 680 STSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPR 739
+ +++K L+ LP + N +L L + AEEN++ A + +FG +R PR
Sbjct: 127 NRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIR--PR 184
Query: 740 SRD 742
D
Sbjct: 185 PTD 187
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of GMIP (Gem
interacting protein). GMIP plays important roles in
neurite growth and axonal guidance, and interacts with
Gem, a member of the RGK subfamily of the Ras small
GTPase superfamily, through the N-terminal half of the
protein. GMIP contains a C-terminal RhoGAP domain. GMIP
inhibits RhoA function, but is inactive towards Rac1 and
Cdc41. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 39.8 bits (93), Expect = 0.002
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 648 SVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQA------------------KQL 689
S H + L L+ EP++P+ ++ + + + K+L
Sbjct: 67 SPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKEL 126
Query: 690 IASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKS 749
+ LP+ + N +L + L + E+N++ + +FG LR P D S
Sbjct: 127 LGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLR-PLVGGDVSMICLL 185
Query: 750 QTQTQA 755
T QA
Sbjct: 186 DTGYQA 191
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXA. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 38.4 bits (89), Expect = 0.006
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 592 LSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDT--GSSDPLPGSV 649
L++ SVP + L++++ HGL + ++ G ++I +R LDT S + ++
Sbjct: 8 LTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNI 67
Query: 650 HSVAESLLLLLESTAEPLIPYNMHPACLTA-----STSYVQA-KQLIASLPLCSRNVYLY 703
H +A L PL+ + ++ L A V+ +I L N
Sbjct: 68 HVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLER 127
Query: 704 LCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDP--SARGKSQTQT 753
L L + E NR+ A +A +F LR P + DP S + S+T T
Sbjct: 128 LIFHLVRIALQEETNRMSANALAIVFAPCILR-CPDTTDPLQSVQDISKTTT 178
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 38.2 bits (89), Expect = 0.007
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 11/136 (8%)
Query: 613 HGLKQQNLFEHPGLPSEI-----LLIRNWLDTGSSDPLPGSVHSVAESLLLLLESTAEPL 667
GL+ ++ PG + I L R D DP V+ V+ L EPL
Sbjct: 32 RGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPL 91
Query: 668 IPYNMHPACLTA------STSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLD 721
++P + A + ++LI SLP +L L+ + ++E N+++
Sbjct: 92 FTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKME 151
Query: 722 AKTIATLFGQIFLRDP 737
+ +A +FG +R
Sbjct: 152 PRNLAIVFGPTLVRTS 167
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 37.4 bits (87), Expect = 0.010
Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 607 VDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLL-LLLESTAE 665
+D++ +HG+K + +++ G+ S++ ++ + S L SLL L E
Sbjct: 28 IDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQYLRELPE 87
Query: 666 PLIPYNMHP----AC--LTASTSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
PL+ + P AC T + + ++L+ LP C+R + +L + +++ E +
Sbjct: 88 PLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETK 147
Query: 720 LDAKTIATL 728
++ + I+ +
Sbjct: 148 MNIQNISIV 156
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of p190-like
proteins. p190, also named RhoGAP5, plays a role in
neuritogenesis and axon branch stability. p190 shows a
preference for Rho, over Rac and Cdc42, and consists of
an N-terminal GTPase domain and a C-terminal GAP domain.
The central portion of p190 contains important
regulatory phosphorylation sites. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 185
Score = 37.4 bits (87), Expect = 0.012
Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 590 GTLSNTSYSVPKEI-WFL---VDHLYRHGLKQQNLFEHPGLPSEI-LLIRNWLDTGSSD- 643
G + K I FL V+ + GL+ + ++ G + + L + + + D
Sbjct: 2 GVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDL 61
Query: 644 -PLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTAS-----TSYVQA-KQLIASLPLC 696
+V++VA +L +PLIPY+MH + A+ + A K+L+ P
Sbjct: 62 VSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPE 121
Query: 697 SRNVYLYLCSFLQELLSHAEENRLDAKTIATLF 729
+ +V+ Y+ + L ++ +++ N + ++ ++ F
Sbjct: 122 NFDVFKYVITHLNKVSQNSKVNLMTSENLSICF 154
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP19-like proteins. The function of ArhGAP19 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 208
Score = 37.4 bits (87), Expect = 0.012
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 602 EIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG---SVHSVAESLLL 658
+I+ L+++L ++ L+ + LF PG + +R+ L++G+ L H A L
Sbjct: 12 QIYQLIEYLEKN-LRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70
Query: 659 LLESTAEPLIPYNMHPACLTAS-----------TSYVQAKQLIAS-------LPLCSRNV 700
L EPL+ + +PA L + TS ++L+ + LP +RN+
Sbjct: 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNL 130
Query: 701 YLYLCSFLQELLSHAEENRLDAKTIATLFG 730
+ L + H ++N++ A +A LF
Sbjct: 131 LKLILDLLYQTAKHEDKNKMSADNLALLFT 160
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of DLC1-like
proteins. DLC1 shows in vitro GAP activity towards RhoA
and CDC42. Beside its C-terminal GAP domain, DLC1 also
contains a SAM (sterile alpha motif) and a START
(StAR-related lipid transfer action) domain. DLC1 has
tumor suppressor activity in cell culture. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 220
Score = 37.8 bits (88), Expect = 0.012
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 592 LSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL--PGSV 649
L T +P+ I + L + L Q LF G+ S I +R+ +++ + +
Sbjct: 13 LQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQA 72
Query: 650 HSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIAS-------LPLCSRNVYL 702
+ VA+ L EPL+ + + A YV +Q + + LP +R V
Sbjct: 73 YDVADMLKQYFRDLPEPLLTNKLSETFI-AIFQYVPKEQRLEAVQCAILLLPDENREVLQ 131
Query: 703 YLCSFLQELLSHAEENRLDAKTIATLFGQ 731
L FL ++ ++++EN++ A +A
Sbjct: 132 TLLYFLSDVAANSQENQMTATNLAVCLAP 160
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXB. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing neurons
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 37.3 bits (86), Expect = 0.014
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 590 GTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSV 649
G+L++ SVP + L++H+ HGL + ++ G + + + L P +V
Sbjct: 6 GSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQAD-----PENV 60
Query: 650 -------HSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIA------SLPLC 696
H++ L L EPL+ + + L A + +QL A LP
Sbjct: 61 KLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTA 120
Query: 697 SRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQT 753
+ N L L ++ + NR+ +A +F LR P S DP K +T
Sbjct: 121 NHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDSS-DPLTSMKDVAKT 176
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 36.9 bits (86), Expect = 0.017
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 593 SNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSV--H 650
+TS +P I V+ + GL ++ L+ G E+ ++ G + P V H
Sbjct: 11 PSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIH 70
Query: 651 SVAESLLLLLESTAEPLIPYNMHPACLTASTSY----VQA--KQLIASLPLCSRNVYLYL 704
+ L L S EPLI + + + A+ +A Q I+ LP +R+ +L
Sbjct: 71 VICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFL 130
Query: 705 CSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQAR 756
LQ ++ + E ++D +A +FG + + DP T Q R
Sbjct: 131 ILHLQR-VAQSPECKMDINNLARVFGPTIVGYSVPNPDPMTIL-QDTVRQPR 180
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain. Major
sperm proteins are involved in sperm motility. These
proteins oligomerise to form filaments. This family
contains many other proteins.
Length = 109
Score = 35.0 bits (81), Expect = 0.026
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 445 VDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILP 504
+D +++F + TL + N V F+ +K + Y + P G + P
Sbjct: 4 IDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFK-VKTTNPKRYR-----VRPNYGILKP 57
Query: 505 GEKCDVKLEVYVDKRCASKMNSGQDKIY 532
GE + + + +DK
Sbjct: 58 GESVTI--TITRQPFDKEPGDPKKDKFV 83
>gnl|CDD|197326 cd09092, INPP5A, Type I inositol polyphosphate 5-phosphatase I.
Type I inositol polyphosphate 5-phosphatase I (INPP5A)
hydrolyzes the 5-phosphate from inositol
1,3,4,5-tetrakisphosphate [I(1,3,4,5)P4] and inositol
1,4,5-trisphosphate [I(1,4,5)P3]. It belongs to a family
of Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), and to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. As the substrates of INPP5A mobilize
intracellular calcium ions, INPP5A is a calcium
signal-terminating enzyme. In platelets, phosphorylated
pleckstrin binds and activates INPP5A in a 1:1 complex,
and accelerates the degradation of the calcium
ion-mobilizing I(1,4,5)P3.
Length = 383
Score = 36.7 bits (85), Expect = 0.041
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 266 IHFRPTYKYDVGTDDWDSSE---KNRAPAWCDRVL 297
I F P+Y Y ++D + R PAWCDR+L
Sbjct: 312 ISFPPSYPY---SEDPEQGTQYMNTRCPAWCDRIL 343
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of fungal SAC7 and BAG7-like proteins.
Both proteins are GTPase activating proteins of Rho1,
but differ functionally in vivo: SAC7, but not BAG7, is
involved in the control of Rho1-mediated activation of
the PKC-MPK1 pathway. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 225
Score = 35.1 bits (81), Expect = 0.10
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 648 SVHSVAESLLLLLESTAEPLIP-------------------YNMHPACLTASTSYVQA-- 686
+VH A L L + EPL+P Y +T QA
Sbjct: 86 TVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIK 145
Query: 687 --KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPS 744
+ LI LP +R + LYL L ++++N + A +A +F L P DP
Sbjct: 146 EYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEMDPK 205
Query: 745 ARGKSQT 751
S+
Sbjct: 206 EYKLSRL 212
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
SYD-1_like proteins. Syd-1, first identified and best
studied in C.elegans, has been shown to play an
important role in neuronal development by specifying
axonal properties. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 207
Score = 34.7 bits (80), Expect = 0.11
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 665 EPLIPYNMHPACLTA---------STSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHA 715
EPLI ++ L A T+ +I LPL ++ L L L +LS++
Sbjct: 89 EPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNS 148
Query: 716 EENRLDAKTIATLFGQIFL 734
E N++ + +A FG + +
Sbjct: 149 ERNKMTPQNLAVCFGPVLM 167
>gnl|CDD|140333 PTZ00312, PTZ00312, inositol-1,4,5-triphosphate 5-phosphatase;
Provisional.
Length = 356
Score = 31.4 bits (71), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 286 KNRAPAWCDRVLYKGDGIQVFIG 308
++R PAWCDRVL+ G+++ G
Sbjct: 289 RDRLPAWCDRVLWNPAGLELMTG 311
>gnl|CDD|182542 PRK10553, PRK10553, assembly protein for periplasmic nitrate
reductase; Provisional.
Length = 87
Score = 28.2 bits (63), Expect = 3.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 559 GCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSV 599
+ V + D G+LI + ++DS TL T SV
Sbjct: 23 STQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESV 63
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.7 bits (70), Expect = 4.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 716 EENRLDAKTIATLF 729
E RLDAK+IATLF
Sbjct: 1408 EAARLDAKSIATLF 1421
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391
and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain,
and ANXL repeats. ArhGAP20 is activated by Rap1 and
induces inactivation of Rho, which in turn leads to
neurite outgrowth. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 29.6 bits (67), Expect = 4.8
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG-SVHSVAESL 656
++PK I ++ LY+ G + +F ++ L++G L V +A L
Sbjct: 14 NLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVL 73
Query: 657 LLLLESTAEPLIPYNMHPACLTA----STSYVQA--KQLIASLPLCSRNVYL--YLCSFL 708
L + L+ +++ ++A + A ++L+ LP NV L +L L
Sbjct: 74 KDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLP--RPNVLLLKHLICVL 131
Query: 709 QELLSHAEENRLDAKTIATLFGQIFLRDP 737
+ ++E N++DA +A L P
Sbjct: 132 HNISQNSETNKMDAFNLAVCIAPSLLWPP 160
>gnl|CDD|226980 COG4633, COG4633, Plastocyanin domain containing protein [General
function prediction only].
Length = 272
Score = 30.0 bits (67), Expect = 5.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 540 EGGKDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGK 579
G +++ ITV G Y S +V VP+R K
Sbjct: 81 NGIQEISITVDGGYIPSRI------VVVDGVPVRLTFKRK 114
>gnl|CDD|182125 PRK09870, PRK09870, tyrosine recombinase; Provisional.
Length = 200
Score = 29.5 bits (66), Expect = 5.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 610 LYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLLL 658
+Y H LK+ HP L EI ++NWL +S P H+ +E + L
Sbjct: 66 IYIHRLKKGFSTTHPLLNKEIQALKNWLSIRTSYP-----HAESEWVFL 109
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.9 bits (68), Expect = 5.6
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 393 SVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENEFL 440
++P D + ++ L N + ++D + K+ EV++K+DK E
Sbjct: 223 NLPK-SKEDLEDLLPLLNLVLYLVDKLANLKLSPEVLRKVDKTREEEE 269
>gnl|CDD|150207 pfam09456, RcsC, RcsC Alpha-Beta-Loop (ABL). This domain is found
in the C-terminus of the phospho-relay kinase RcsC
between pfam00512 and pfam00072, and forms a discrete
alpha/beta/loop structure.
Length = 92
Score = 28.1 bits (63), Expect = 5.9
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 698 RNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARG 747
RN L SFL+ LLS+ + T + + D P D R
Sbjct: 7 RN--ASLESFLERLLSYHGLTVQRYEGQQTSPDDVLITDDPSQLDWPGRA 54
>gnl|CDD|236634 PRK09926, PRK09926, putative chaperone protein EcpD; Provisional.
Length = 246
Score = 29.3 bits (66), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 631 LLIRNWLDTGSSDPLPGSV 649
LL+++WLDTG + PGS+
Sbjct: 55 LLVQSWLDTGDDNAEPGSI 73
>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.
Length = 257
Score = 29.3 bits (67), Expect = 6.2
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 432 LDKLENEFL-PQVMVDNT--EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKK 482
D LE V++D T E + L F K L+I TG Q +++
Sbjct: 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEE 104
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP)
domain for Rho-like GTPases found in GRAF (GTPase
regulator associated with focal adhesion kinase); Graf
is a multi-domain protein, containing SH3 and PH
domains, that binds focal adhesion kinase and influences
cytoskeletal changes mediated by Rho proteins. Graf
exhibits GAP activity toward RhoA and Cdc42, but only
weakly activates Rac1. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 28.9 bits (65), Expect = 7.2
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 614 GLKQQNLFEHPGLPSEIL-LIRNWLDTGSSDP----LPGS---VHSVAESLLLLLESTAE 665
G+ +Q L+ G+ S++ L+ LD +S P L S + ++ +L L + E
Sbjct: 43 GINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPE 102
Query: 666 PLIPYNMHPACLTASTSYVQAKQ------LIASLPLCSRNVYLYLCSFLQELLSHAEENR 719
PL+ Y +H + A+ S + L+ LP +R + L L + H+++N
Sbjct: 103 PLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNL 162
Query: 720 LDAKTIATLFGQIFLR 735
+ + +FG LR
Sbjct: 163 MTVSNLGVVFGPTLLR 178
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 29.6 bits (67), Expect = 8.3
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 21/146 (14%)
Query: 18 DLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQK--- 74
+LS T+++ P I +L++ F E L D + +++ P K
Sbjct: 252 ELSSATQTSINLPSIGGDIDLLKELTRAKF---EELILDL----LERTIEPVEQALKDAG 304
Query: 75 -----ICLVRLVGMML-IVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTT 128
I LV LVG I V+E + + I G AI+ + +
Sbjct: 305 LEKSDIDLVILVGGSTRIPAVQELVKEFF----GKEPEKSINPDEAVALGAAIQAAVLSG 360
Query: 129 SLSQ-HVHNVASDTVGTGIMGKLGNK 153
+ + +V ++G +G +
Sbjct: 361 EVPDVLLLDVIPLSLGIETLGGVRTP 386
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 29.1 bits (65), Expect = 9.9
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 76 CLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMG--KLGNKGGVA---IRLDLHT--T 128
C R+ M + +A N+AS TVG GI+G N G+ I L + T T
Sbjct: 45 CFARVSLFMATIIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMT 104
Query: 129 SLSQHVHNVASDTVGT----GIMGKLGNKGG---VAIRLDLHTTSLC 168
S + VA+D G+ L G VA H S C
Sbjct: 105 IFSIYALGVAADKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSAC 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,994,556
Number of extensions: 3971061
Number of successful extensions: 3230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3128
Number of HSP's successfully gapped: 105
Length of query: 781
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 676
Effective length of database: 6,280,432
Effective search space: 4245572032
Effective search space used: 4245572032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)