RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3271
(781 letters)
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 377 bits (969), Expect = e-125
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 19/372 (5%)
Query: 414 RVIDAVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQV 473
+V+D RYRKV E+ ++ +D++EN+FLP + + E VF+ ++F + Q + I+N GQV
Sbjct: 1 KVVDERRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV 60
Query: 474 PVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYD 533
P F FI K +DS YCK WL EP+ G++ P E D+ L+VYV K + +NSG+DKI D
Sbjct: 61 PCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIED 120
Query: 534 ILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSG--- 590
ILVLHL+ GKD F+T++G+Y S FG S+E L ++ P+R+V + KLI+LE
Sbjct: 121 ILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEK 180
Query: 591 ----------TLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTG 640
S VPKEIW LVDHL+++ Q++LF+ PG+ E+ I + LDT
Sbjct: 181 SLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTS 240
Query: 641 SSDPLPGSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRNV 700
+ +PGS HSVAE+LL+ LE+ EP+I Y ++ CL ++ +Q+I+ LP C RNV
Sbjct: 241 IPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNV 300
Query: 701 YLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKAN 760
+ YL +FL+ELL +E N ++A IATLF + LR PP QT + +R
Sbjct: 301 FRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMAR------QTPSDRQRAIQ 354
Query: 761 FVYHFLVNDFSE 772
F+ FL+ +
Sbjct: 355 FLLGFLLGSEED 366
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 352 bits (904), Expect = e-116
Identities = 154/307 (50%), Positives = 198/307 (64%), Gaps = 40/307 (13%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 60
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 8 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 67
Query: 61 AVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVA 120
AV++ LHP A Y K+ L+RLVG+ML+++V++ A ++ V ++TVGTGIMG++GNKGGVA
Sbjct: 68 AVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVA 127
Query: 121 IRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEE 180
IR H TS+ C VNSHLAAH EE
Sbjct: 128 IRFQFHNTSI-------------------------------------CVVNSHLAAHIEE 150
Query: 181 FERRNQDFHDIDSRIAFTGF---LPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAG 237
+ERRNQD+ DI SR+ F LPP +I +HD I WLGDLNYRI +LD+ KVK LI
Sbjct: 151 YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEK 210
Query: 238 KYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVL 297
+Q + +DQL Q A VF G+ EG + F+PTYKYD G+DDWD+SEK RAPAWCDR+L
Sbjct: 211 DFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRIL 270
Query: 298 YKGDGIQ 304
+KG I
Sbjct: 271 WKGKNIT 277
Score = 100 bits (251), Expect = 3e-23
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLR 362
+ F GT+NVNGQSP L WL+ + P +Y +GFQELDLSKEAF F++T KE+EW +
Sbjct: 8 FRFFAGTYNVNGQSPKECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 67
Query: 363 AVTKSLHPGAAYQKICLVRLVGI 385
AV++ LHP A Y K+ L+RLVGI
Sbjct: 68 AVSEGLHPDAKYAKVKLIRLVGI 90
Score = 51.3 bits (123), Expect = 6e-07
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRYR 422
Q+ Y+S +LK SDHKPV S+F+ +RV+ +
Sbjct: 277 TQLSYQSHMALKTSDHKPVSSVFDIGVRVVAHHHHH 312
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 314 bits (807), Expect = e-101
Identities = 101/310 (32%), Positives = 151/310 (48%), Gaps = 47/310 (15%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDW-LTTTVDPPHIYAIGFQEL-DLSKEAFLFNETLKEDEW 58
+++F+ ++N+NG S + L +W IY +GFQE+ L+ + + + K EW
Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84
Query: 59 LRAVTKSLHPGAA----YQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLG 114
V + L+ Y ++ +LVG L++F +E+ + NV TG+ G G
Sbjct: 85 ESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSG 144
Query: 115 NKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHL 174
NKG VAIR D T L CF+ SHL
Sbjct: 145 NKGAVAIRFDYEDTGL-------------------------------------CFITSHL 167
Query: 175 AAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLI 234
AA ++ R+ D+ I S + F +SI +HD + W GD NYRI L +V I
Sbjct: 168 AAGYTNYDERDHDYRTIASGLRFR---RGRSIFNHDYVVWFGDFNYRI-SLTYEEVVPCI 223
Query: 235 NAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCD 294
GK + E+DQL +Q G VF + E I F PTYK+D+GTD +D+S+K+R PAW D
Sbjct: 224 AQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTD 283
Query: 295 RVLYKGDGIQ 304
R+LY+G+ +
Sbjct: 284 RILYRGELVP 293
Score = 76.1 bits (187), Expect = 6e-15
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 279 DDWDSSE-KNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSDW-LTTTVDPPHIYA 336
++ + E + R + + +++F+ ++N+NG S + L +W IY
Sbjct: 5 HEYVNHELRKRENEFSEH-----KNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYV 59
Query: 337 IGFQEL-DLSKEAFLFNETLKEDEWLRAVTKSLHPGAA----YQKICLVRLVGI 385
+GFQE+ L+ + + + K EW V + L+ Y ++ +LVG
Sbjct: 60 VGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Score = 53.0 bits (127), Expect = 2e-07
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENE 438
Y+SVP L SDH+P+ + + ++I +D + + + EE+ + + +
Sbjct: 292 VPHSYQSVP-LYYSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQEVRD 342
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling,
structural genomics consortium stockholm, magnesium
binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB:
3nr8_B*
Length = 316
Score = 300 bits (770), Expect = 5e-96
Identities = 86/324 (26%), Positives = 134/324 (41%), Gaps = 71/324 (21%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWL-----------TTTVDPPHIYAIGFQELDLSKEAFLF 49
I VFIGTWN+ P +++ W T P IY G QE
Sbjct: 8 ISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQE---------- 57
Query: 50 NETLKEDEWLRAVTKSL--HPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGT 107
++ + EWL + L Y+ I + L + + V V+ + +V++ +V T
Sbjct: 58 -NSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKT 116
Query: 108 GIMGKLGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSL 167
GI LGNKG V + + TS
Sbjct: 117 GIANTLGNKGAVGVSFMFNGTSF------------------------------------- 139
Query: 168 CFVNSHLAAHTEEFERRNQDFHDIDSRIAFTG--FLPPKSIKDHDQIYWLGDLNYRITDL 225
FVN HL + E+ RRNQ++ DI ++ ++W GDLNYR+ D+
Sbjct: 140 GFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL-DM 198
Query: 226 DLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDD----- 280
D+ ++ N I+ +++ +L DQL + K VFL + E I F PTY+Y+ G+ D
Sbjct: 199 DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWH 258
Query: 281 --WDSSEKNRAPAWCDRVLYKGDG 302
+ + P+WCDR+L+K
Sbjct: 259 KQKPTGVRTNVPSWCDRILWKSYP 282
Score = 63.8 bits (155), Expect = 5e-11
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 301 DGIQVFIGTWNVNGQSPSCDLSDWL-----------TTTVDPPHIYAIGFQELDLSKEAF 349
D I VFIGTWN+ P +++ W T P IY G QE
Sbjct: 6 DMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQE-------- 57
Query: 350 LFNETLKEDEWLRAVTKSL--HPGAAYQKICLVRLVGIR 386
++ + EWL + L Y+ I + L I+
Sbjct: 58 ---NSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIK 93
Score = 41.0 bits (96), Expect = 9e-04
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDI 413
Y + SDH PV F +
Sbjct: 287 ICNSYGCTDDIVTSDHSPVFGTFEVGV 313
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 285 bits (730), Expect = 1e-89
Identities = 76/317 (23%), Positives = 123/317 (38%), Gaps = 66/317 (20%)
Query: 1 IQVFIGTWNVNGQSPS-CDLSDWL--TTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDE 57
+ +F+ TWN+ GQ L ++L +Y IG QE E
Sbjct: 26 VALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE-----------GCSDRRE 74
Query: 58 WLRAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKG 117
W + ++L P Y + + + +F+ +L V TV T I+ ++ KG
Sbjct: 75 WETRLQETLGPH--YVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKG 132
Query: 118 GVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAH 177
+ I TS F+ SH +
Sbjct: 133 ALGISFTFFGTSF-------------------------------------LFITSHFTSG 155
Query: 178 TEEFERRNQDFHDIDSRIAFTGFLP---------PKSIKDHDQIYWLGDLNYRITDLDLT 228
+ R D+ + +P D+++W GD N+R+ T
Sbjct: 156 DGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRL-SGGRT 214
Query: 229 KVKNLINAGK---YQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSE 285
V L+ G +L+HDQL R+ KG++F G++E IHF P+YK+D+G D +DS+
Sbjct: 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTS 274
Query: 286 KNRAPAWCDRVLYKGDG 302
K R P++ DRVLY+
Sbjct: 275 KQRTPSYTDRVLYRSRH 291
Score = 66.9 bits (163), Expect = 6e-12
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 303 IQVFIGTWNVNGQSPS-CDLSDWL--TTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDE 359
+ +F+ TWN+ GQ L ++L +Y IG QE E
Sbjct: 26 VALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE-----------GCSDRRE 74
Query: 360 WLRAVTKSLHPGAAYQKICLVRLVGIRQQV 389
W + ++L P Y + + +
Sbjct: 75 WETRLQETLGPH--YVLLSSAAHGVLYMSL 102
Score = 48.4 bits (115), Expect = 6e-06
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDIRVID-AVR------YRKVHEEVMKK 431
V Y S P +K SDH+PV LF +R + R+++ +K+
Sbjct: 296 CPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDRELYLLGIKR 347
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Length = 282
Score = 278 bits (712), Expect = 6e-88
Identities = 58/309 (18%), Positives = 103/309 (33%), Gaps = 62/309 (20%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWL-TTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWL 59
+ V +WN + +L + L + + P + A+ Q + ++
Sbjct: 7 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQ------TDKPQQGPAC 60
Query: 60 RAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGV 119
+SL Y K+ M L V+ E
Sbjct: 61 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQ----------------------- 97
Query: 120 AIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTE 179
N + + GG+ ++ F S ++
Sbjct: 98 ----------------NTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDE-- 139
Query: 180 EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGKY 239
+ N + K D ++W+GDLN R+ + + T K+L++
Sbjct: 140 DVTSTNTKYAYDTR------LDYSKKDDPSDFLFWIGDLNVRV-ETNATHAKSLVDQNNI 192
Query: 240 QTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYK 299
++ DQL + + +F G+ E + F+PTYK+ TD++D S P+W DR LYK
Sbjct: 193 DGLMAFDQLKKA-KEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDRALYK 248
Query: 300 ---GDGIQV 305
G IQ
Sbjct: 249 SGTGKTIQP 257
Score = 76.0 bits (187), Expect = 3e-15
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWL-TTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWL 361
+ V +WN + +L + L + + P + A+ Q + ++
Sbjct: 7 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQ------TDKPQQGPAC 60
Query: 362 RAVTKSLHPGAAYQKICLVRLVGIR 386
+SL Y K+ +
Sbjct: 61 VKNFQSLLTSKGYTKLKNTITETMG 85
Score = 42.2 bits (99), Expect = 4e-04
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDI 413
Q + Y S+ + K ++H+PV++ F +
Sbjct: 256 QPLSYNSLTNYKQTEHRPVLAKFRVTL 282
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport,
vesicular trafficking, GTPase, LOWE syndr immunoglobulin
fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Length = 140
Score = 191 bits (486), Expect = 2e-57
Identities = 66/137 (48%), Positives = 95/137 (69%)
Query: 420 RYRKVHEEVMKKLDKLENEFLPQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEF 479
RYRKV E+ ++ +D++EN+FLP + + E VF+ ++F + Q + I+N GQVP F F
Sbjct: 4 RYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSF 63
Query: 480 IKKFDDSNYCKDWLHIEPYMGFILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHL 539
I K +DS YCK WL EP+ G++ P E D+ L+VYV K + +NSG+DKI DILVLHL
Sbjct: 64 IPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHL 123
Query: 540 EGGKDLFITVTGSYERS 556
+ GKD F+T++G+Y S
Sbjct: 124 DRGKDYFLTISGNYLPS 140
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 79.6 bits (197), Expect = 4e-17
Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 33/197 (16%)
Query: 554 ERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRH 613
FG S++ L + N +P + V +L H
Sbjct: 5 PNQQFGVSLQHLQEKNPEQE------------------------PIPIVLRETVAYLQAH 40
Query: 614 GLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL--PGSVHSVAESLL-LLLESTAEPLIPY 670
L + +F + ++ + G ++H A +L L EPL+ +
Sbjct: 41 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA-VILKTFLRELPEPLLTF 99
Query: 671 NMHPACLTASTS-----YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTI 725
+++P + Q++ +LP + V +L +FL ++ +H+++N++ +
Sbjct: 100 DLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159
Query: 726 ATLFGQIFLRDPPRSRD 742
A +FG L +
Sbjct: 160 AVVFGPNLLWAKDAAIT 176
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 78.9 bits (195), Expect = 1e-16
Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 36/212 (16%)
Query: 551 GSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHL 610
++ SVFG + VQ T +P+ I + +L
Sbjct: 14 LYFQGSVFGVPLTVNVQ--------------------------RTGQPLPQSIQQAMRYL 47
Query: 611 YRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG--SVHSVAESLL-LLLESTAEPL 667
H L Q LF G+ S I +R + S + VA +L EPL
Sbjct: 48 RNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVA-DMLKQYFRDLPEPL 106
Query: 668 IPYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLD 721
+ + L +QA K I LP +R V L FL ++ + +EN++
Sbjct: 107 MTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMT 166
Query: 722 AKTIATLFGQIFLRDPPRSRDPSARGKSQTQT 753
+A R+ S+ Q +
Sbjct: 167 PTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQ 198
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 79.4 bits (196), Expect = 2e-16
Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 31/220 (14%)
Query: 543 KDLFITVTGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKE 602
+ T +FG L VP +P
Sbjct: 50 RRRHETAATEIGGKIFGVPFNALPHSAVPEYG-----------------------HIPSF 86
Query: 603 IWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLL-LLLE 661
+ L + + LF G + ++N +D G +A LL
Sbjct: 87 LVDACTSL-EDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIA-GLLKQFFR 144
Query: 662 STAEPLIPYNMHPACLTASTS-----YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAE 716
EP++P ++H A L A L L + +V Y +FL+ + +
Sbjct: 145 ELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSS 204
Query: 717 ENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQAR 756
EN++D+ +A +F L+ S+ + + + QA
Sbjct: 205 ENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAA 244
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 78.2 bits (193), Expect = 3e-16
Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 33/201 (16%)
Query: 550 TGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDH 609
FG S++ L + N + P + V +
Sbjct: 37 RPPLPNQQFGVSLQHLQEKNPEQEPI------------------------PIVLRETVAY 72
Query: 610 LYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLP--GSVHSVAESLL-LLLESTAEP 666
L H L + +F + ++ + G +H A +L L EP
Sbjct: 73 LQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPA-VILKTFLRELPEP 131
Query: 667 LIPYNMHPACLTASTS-----YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLD 721
L+ ++++P + Q++ +LP + V +L +FL ++ +H+++N++
Sbjct: 132 LLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMT 191
Query: 722 AKTIATLFGQIFLRDPPRSRD 742
+A +FG L +
Sbjct: 192 NTNLAVVFGPNLLWAKDAAIT 212
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 75.8 bits (187), Expect = 8e-16
Identities = 35/232 (15%), Positives = 82/232 (35%), Gaps = 44/232 (18%)
Query: 550 TGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDH 609
T +FG S+ + + + ++PK + ++
Sbjct: 5 TSPMPGQLFGISLPNICEND----------------------------NLPKPVLDMLFF 36
Query: 610 LYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG-SVHSVAESLL-LLLESTAEPL 667
L + G + +F ++ L++G L S+ +A S+L L + +
Sbjct: 37 LNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIA-SVLKDFLRNIPGSI 95
Query: 668 IPYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLD 721
+++ ++ + ++L+ LP + + YL L + H+ N++
Sbjct: 96 FSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMT 155
Query: 722 AKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSEL 773
A +A L PP S P + + + +K + + FL+ + +
Sbjct: 156 AFNLAVCVAPSILW-PPASSSP------ELENEFTKKVSLLIQFLIENCLRI 200
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 73.8 bits (182), Expect = 5e-15
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 36/212 (16%)
Query: 551 GSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHL 610
G + +FG + + + + +VP + ++ +
Sbjct: 13 GLIKDQIFGSHLHKVCE--------------------------RENSTVPWFVKQCIEAV 46
Query: 611 YRHGLKQQNLFEHPGLPSEILLIRNWLDTGS----SDPLPGSVHSVAESLLLLLESTAEP 666
+ GL ++ G + I +R ++ D +H V +L + EP
Sbjct: 47 EKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEP 106
Query: 667 LIPYNMHPACLTASTS------YVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRL 720
L PY+ + A K L+ LP +R+ L L ++++ A +N +
Sbjct: 107 LFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLM 166
Query: 721 DAKTIATLFGQIFLRDPPRSRDPSARGKSQTQ 752
+++ +FG LR + + + Q Q
Sbjct: 167 STQSLGIVFGPTLLRAENETGNMAIHMVYQNQ 198
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 73.4 bits (181), Expect = 6e-15
Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 36/210 (17%)
Query: 552 SYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLY 611
+E + FG ++ LV P +P + V+ +
Sbjct: 7 GWESNYFGMPLQDLVTAEKP---------------------------IPLFVEKCVEFIE 39
Query: 612 RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS---VHSVAESLLLLLESTAEPLI 668
GL + L+ G ++ I+ D + L V++VA +L +PLI
Sbjct: 40 DTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLI 99
Query: 669 PYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDA 722
PY++HP L A+ + A K+++ + +V+ Y+ + L + + N + A
Sbjct: 100 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 723 KTIATLFGQIFLRDPPRSRDPSARGKSQTQ 752
++ F +R +R+ + K
Sbjct: 160 DNLSICFWPTLMRPDFENREFLSTTKIHQS 189
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 72.8 bits (179), Expect = 2e-14
Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 36/211 (17%)
Query: 551 GSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHL 610
++E + FG + T+V P +P I ++++
Sbjct: 47 ATWESNYFGVPLTTVVTPEKP---------------------------IPIFIERCIEYI 79
Query: 611 YRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS---VHSVAESLLLLLESTAEPL 667
GL + ++ G SE+ ++ D + L V++VA ++ +PL
Sbjct: 80 EATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPL 139
Query: 668 IPYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLD 721
+PYNM + A + A K+++ P + V+ Y+ S L ++ + + N +
Sbjct: 140 VPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMT 199
Query: 722 AKTIATLFGQIFLRDPPRSRDPSARGKSQTQ 752
++ ++ F +R + D ++
Sbjct: 200 SENLSICFWPTLMRPDFSTMDALTATRTYQT 230
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 69.2 bits (170), Expect = 1e-13
Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 37/198 (18%)
Query: 552 SYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLY 611
+ + V+ C + TLV+ + P + + +
Sbjct: 3 KHVKKVYSCDLTTLVK--------------------------AHTTKRPMVVDMCIREIE 36
Query: 612 RHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS-----VHSVAESLLLLLESTAEP 666
GL + L+ G I ++ D ++ + +L L P
Sbjct: 37 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP 96
Query: 667 LIPYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRL 720
LI Y+ +P + ++ ++ + + LP YL + L+ + H +EN +
Sbjct: 97 LITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLM 156
Query: 721 DAKTIATLFGQIFLRDPP 738
+A+ + +FG +R P
Sbjct: 157 NAENLGIVFGPTLMRSPE 174
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 69.5 bits (170), Expect = 2e-13
Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 10/178 (5%)
Query: 598 SVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLL 657
P + LV+ + R GL ++ + D SD ++A+ +
Sbjct: 39 VAPPLLVKLVEAIERTGLDSESHYRPELPAPRT-------DWSLSDVDQWDTAALADGIK 91
Query: 658 LLLESTAEPLIPYNMHPACLTASTSYVQAKQL---IASLPLCSRNVYLYLCSFLQELLSH 714
L + PL+ A +LPL +L L +
Sbjct: 92 SFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARR 151
Query: 715 AEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSE 772
A + + FG + LR PP P G + + L+ + E
Sbjct: 152 APALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLE 209
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 71.1 bits (174), Expect = 5e-13
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 37/202 (18%)
Query: 550 TGSYERSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDH 609
+ + V+ C + TLV+ + P + +
Sbjct: 262 DLKHVKKVYSCDLTTLVK--------------------------AHTTKRPMVVDMCIRE 295
Query: 610 LYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS-----VHSVAESLLLLLESTA 664
+ GL + L+ G I ++ D ++ + +L L
Sbjct: 296 IESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 355
Query: 665 EPLIPYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEEN 718
PLI Y+ +P + ++ ++ + + LP YL + L+ + H +EN
Sbjct: 356 IPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKEN 415
Query: 719 RLDAKTIATLFGQIFLRDPPRS 740
++A+ + +FG +R P
Sbjct: 416 LMNAENLGIVFGPTLMRSPELD 437
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 63.5 bits (155), Expect = 2e-11
Identities = 43/231 (18%), Positives = 77/231 (33%), Gaps = 43/231 (18%)
Query: 555 RSVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHG 614
VFGC + + N+ + VP+ + + R+G
Sbjct: 19 ERVFGCDLGEHLL--------------------------NSGFEVPQVLQSCTAFIERYG 52
Query: 615 LKQQNLFEHPGLPSEILLIRNWLDTG-----SSDPLPGSVHSVAESLL-LLLESTAEPLI 668
+ ++ G+ S I +R+ D+ + +P +HSV SL L PL+
Sbjct: 53 I-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVG-SLCKLYFRELPNPLL 110
Query: 669 PYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDA 722
Y ++ A ++ + +I LP +L L L + + A
Sbjct: 111 TYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHA 170
Query: 723 KTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSEL 773
K +A ++ LR SA R + V F++N L
Sbjct: 171 KNLAIVWAPNLLRSKQ---IESACFSGTAAFMEVRIQSVVVEFILNHVDVL 218
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 61.9 bits (151), Expect = 6e-11
Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 21/179 (11%)
Query: 575 VALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIR 634
+ L L E + D P + LV+ + + GL+ L+ S + +R
Sbjct: 10 LTLPDLAEQFAPPDI---------APPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELR 59
Query: 635 NWLDTGSSDPLP--GSVHSVAESLLLLLESTAEPLIPYNMHPACLTASTSY-------VQ 685
LD + VH +A++ L P+IP ++ ++ +
Sbjct: 60 QLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQL 119
Query: 686 AKQLI--ASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRD 742
K+LI S+P YL +L + +N L+A+ ++ +F + R S D
Sbjct: 120 LKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD 178
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 61.9 bits (151), Expect = 6e-11
Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 38/196 (19%)
Query: 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLK 616
V+ + + + L + I + + G+
Sbjct: 18 VYNSNKDNQSEGTAQLDSI-----------------------GFSIIKKCIHAVETRGIN 54
Query: 617 QQNLFEHPGLPSEILLIRNWLDTG-------SSDPLPGSVHSVAESLL-LLLESTAEPLI 668
+Q L+ G+ S + + + L + + ++ S L L PL+
Sbjct: 55 EQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT-SALKTYLRMLPGPLM 113
Query: 669 PYNMHPACLTASTSY-----VQA-KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDA 722
Y + + A+ V L+ LP +R + L + L ++ + ++N +
Sbjct: 114 MYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTV 173
Query: 723 KTIATLFGQIFLRDPP 738
+ +FG LR
Sbjct: 174 ANLGVVFGPTLLRPQE 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 6e-11
Identities = 85/564 (15%), Positives = 157/564 (27%), Gaps = 161/564 (28%)
Query: 255 GNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKN-RAPAWCDRVLYKGD------------ 301
G YK+ F + + D K+ + D ++ D
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 302 ------GIQVFIGTW-NVNGQSPSCDLSDWLTTTV-----DPPHIYAIGFQELDLSKEAF 349
+Q F+ +N +L + + P + + ++ D
Sbjct: 72 LSKQEEMVQKFVEEVLRIN--------YKFLMSPIKTEQRQPSMMTRMYIEQRDR----- 118
Query: 350 LFNET----------LKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVDYKSVPSLKI 399
L+N+ L+ LR L P + + + ++G K+ +L +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSG-----KTWVALDV 170
Query: 400 SDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENEFLPQVMV---------DNTEV 450
V + I ++ ++ E V++ L KL + P
Sbjct: 171 CLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 451 VFDTLR--FLEAQNKT--LIIANTGQVPVQ-FEFIKKFDDSNYCKDWLHIEPYMGFILPG 505
+ LR + L++ N VQ + F+ S CK IL
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN-----VQNAKAWNAFNLS--CK-----------IL-- 269
Query: 506 EKCDVKLEVYVDKRCASKMNS-GQDKIYDILVLHLEGG------KDLFITVTGSYERSVF 558
+ R + I + H K L +
Sbjct: 270 ----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYL 311
Query: 559 GCSIETL----VQLNVPLRDVALGKLIELESSKDSGTLSNTSYS----VPKEIWFLVDHL 610
C + L + N P L +I T N + + I ++ L
Sbjct: 312 DCRPQDLPREVLTTN-PR---RLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 611 ----YRHGLKQQNLF-EHPGLPSEILLIRNWLDTGSSDPLPGSVHSVAESLL-------- 657
YR + ++F +P+ +L + W D SD + SL+
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 658 -----LLLESTAEPLIPYNMHPACLTASTSYVQAKQLIAS--LPLCSRNVYLYLCSFLQE 710
+ LE + Y +H + + Y K + +P Y S +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTFDSDDLIPPYLDQ---YFYSHIGH 479
Query: 711 LLSHAEENRLDAKTIATLFGQIFL 734
L + E LF +FL
Sbjct: 480 HLKNIEHPERMT-----LFRMVFL 498
Score = 61.0 bits (147), Expect = 1e-09
Identities = 66/462 (14%), Positives = 137/462 (29%), Gaps = 131/462 (28%)
Query: 210 DQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFR 269
+I+WL N + L ++ L+ ++ + +R N+ L R
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 270 -----PTYK--YDVGTDD-WDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDL 321
Y+ V + ++ F + SC +
Sbjct: 236 RLLKSKPYENCLLV-LLNVQNAKA-----------------WNAF---------NLSCKI 268
Query: 322 SDWLTTTVDPPHIYAIGFQE-----LDLSKEAFLFNETL---------KEDEWLRAVTKS 367
L TT + LD +E + + L +
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLT 324
Query: 368 LHP------GAA----------YQKICLVRLVGIRQQVDYKSVPSLKISDHKPV---MSL 408
+P + ++ + +L I + S+ L+ ++++ + +S+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPAEYRKMFDRLSV 380
Query: 409 FNSDIR----VIDAVRYRKVHEEVMKKLDKLENEFLPQVMVDNTEV------VFDTLRFL 458
F ++ + + + +VM ++KL L V E ++ L+
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVK 438
Query: 459 EAQNKTL---IIANTGQVPVQFEFIKKFDDSNYCKDWL------HIEPYMGFILPGEKCD 509
L I+ + K FD + +L HI ++ I E+
Sbjct: 439 LENEYALHRSIVD-------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 510 VKLEVYVD------K-RCASKMNSGQDKIYDILVLHLEGGKDLFITVT-GSYERSV---- 557
+ V++D K R S + I + L L+ K +I YER V
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKP-YICDNDPKYERLVNAIL 549
Query: 558 -FGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYS 598
F IE + + D L+ + + + ++
Sbjct: 550 DFLPKIEENL-ICSKYTD-----LLRIALMAEDEAIFEEAHK 585
Score = 43.7 bits (102), Expect = 3e-04
Identities = 50/321 (15%), Positives = 89/321 (27%), Gaps = 108/321 (33%)
Query: 19 LSDWLTTTVDPPHIYAIGFQELDLSKEAF--------LFNETLKE-----DEWLRAVTKS 65
L +L DL +E + E++++ D W
Sbjct: 307 LLKYLDCRPQ------------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 66 LHPGAAYQKICL-------VRLVGMMLIVFVEE-NLAQHV-----HNVASDTVGTGIMGK 112
L + L R + L VF ++ + +V V ++ K
Sbjct: 355 LT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVNK 410
Query: 113 LGNKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSL----- 167
L V + T S+ ++ + K + LH + +
Sbjct: 411 LHKYSLVEKQPKESTISI----PSIYLEL-----------KVKLENEYALHRSIVDHYNI 455
Query: 168 --CFVN-------------SHLAAH---------TEEFERRNQDFHDIDSRIAFTGFL-- 201
F + SH+ H F DF ++ +I
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 202 PPKSIKDHDQIYWLGDL-NYR--ITDLDLT---KVKNLIN-AGKYQTILEHDQLTR--QH 252
SI + L L Y+ I D D V +++ K + L + T +
Sbjct: 516 ASGSILNT-----LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 253 AKGNVFLGYKEGAIHFRPTYK 273
A L ++ AI F +K
Sbjct: 571 A-----LMAEDEAI-FEEAHK 585
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 61.1 bits (149), Expect = 9e-11
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 12/164 (7%)
Query: 592 LSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLPGS--- 648
+S TS +P + V+ + + GL + L+ G + ++ + PL
Sbjct: 10 VSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDD 69
Query: 649 VHSVAESLL-LLLESTAEPLIPYNMHPACLTAS------TSYVQAKQLIASLPLCSRNVY 701
+H++ SLL L + EPL+ + ++ A + A+ S Q + LP +R+
Sbjct: 70 IHAIC-SLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTL 128
Query: 702 LYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSA 745
+L LQ ++ + ++D +A +FG + + DP
Sbjct: 129 AFLMIHLQ-RVAQSPHTKMDVANLAKVFGPTIVAHAVPNPDPVT 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 101/606 (16%), Positives = 161/606 (26%), Gaps = 266/606 (43%)
Query: 160 LDLHTTSLCFVNSH------------LAAHTEEFER---RNQDFHDIDSRIAFTGFLPPK 204
+L L +V+S L EFE D H A L +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH------ALAAKLLQE 111
Query: 205 SIKDHDQIYWLGDLNYRITDLDLTKVKNLI--------NAGKYQTILEHDQLTRQHAKGN 256
+ D L K K LI A + + L R +GN
Sbjct: 112 N------------------DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 257 -----VFLG------Y-KEGAIHFRPTYK-YDVGTDDW-DSSEKN-----RAPAWCDRVL 297
+F G Y +E R Y+ Y V D S + R ++V
Sbjct: 154 AQLVAIFGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 298 YKGDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPP---------------------HIYA 336
+G ++ +WL + P H Y
Sbjct: 210 TQG------------------LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YV 250
Query: 337 IGFQELDLSKE------------------AFLFNETLKEDEWLRAVTKSLHPGAAYQKIC 378
+ + L + A ET + + +V K++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--------- 301
Query: 379 LVRLVGIRQQVDY--KSVPSLKISDHKPVMSLFNSD------IRVIDAVRYRKVHEEVMK 430
++ +G+R Y S+P + D SL N++ + + + + E+V
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILED-----SLENNEGVPSPMLSISNLTQ-----EQVQD 351
Query: 431 KLDKLENEFLPQ-----VMVDNTE---VV---------FDT-LRFLEAQNKTLIIANTGQ 472
++K N LP + + N VV + LR +A + + +
Sbjct: 352 YVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL----DQSR 406
Query: 473 VPVQFE-----FIKKFDDSNYCKDWL------HIEPYMGFILPGEKCDV-KLEVYVDKRC 520
+P F F +F L H + D+ K V +
Sbjct: 407 IP--FSERKLKFSNRF---------LPVASPFH-SHLLVPASDLINKDLVKNNVSFN--- 451
Query: 521 ASKMNSGQDKIYDILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQLNV---------- 570
A + I V G DL R + G E +V +
Sbjct: 452 AKDIQ--------IPVYDTFDGSDL---------RVLSGSISERIVDCIIRLPVKWETTT 494
Query: 571 -----------PLRDVALGKLIELESSKD--------SGTLSNTSYSVPKEIWFLVDHLY 611
P LG L +KD +GTL D Y
Sbjct: 495 QFKATHILDFGPGGASGLGVLT--HRNKDGTGVRVIVAGTLDINP-----------DDDY 541
Query: 612 RHGLKQ 617
G KQ
Sbjct: 542 --GFKQ 545
Score = 49.3 bits (117), Expect = 6e-06
Identities = 71/459 (15%), Positives = 123/459 (26%), Gaps = 198/459 (43%)
Query: 17 CDLSDWLTTTVDPPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKIC 76
++ +WL + P + ++L ++ S P I
Sbjct: 213 LNILEWLENPSNTP------------------------DKDYLLSIPISC-PL-----IG 242
Query: 77 LVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLSQHVHN 136
++ Q H V A L L ++
Sbjct: 243 VI----------------QLAHYVV-----------------TAKLLGFTPGELRSYLK- 268
Query: 137 VASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDS--- 193
+ G++ VAI + E F
Sbjct: 269 -GATGHSQGLV------TAVAIA---------------ETDSWE------SFFVSVRKAI 300
Query: 194 RIAF-TGF----------LPPKSIKD---HDQIYWLGDLNY--RITDLDLTKVKNLINAG 237
+ F G LPP ++D +++ G + I++L +V++ +N
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNK- 355
Query: 238 KYQTILEHDQLTRQHAKGN--VFLGYKEGAIHF----RPTYKYDVGTDDWDSSEKNRAPA 291
T H V + GA + P Y + + K +AP+
Sbjct: 356 -----------TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL----TLRKAKAPS 400
Query: 292 WCD--RVLY---KGDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPPH-IY---AIGFQEL 342
D R+ + K F L P H A
Sbjct: 401 GLDQSRIPFSERKLKFSNRF------------------LPVAS-PFHSHLLVPASDLINK 441
Query: 343 DLSKEAFLFN-ETLK---------EDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVDYK 392
DL K FN + ++ D LR ++ S+ +V + IR V ++
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSD--LRVLSGSISE-------RIVDCI-IRLPVKWE 491
Query: 393 SVPSLKIS---DHKP-----VMSLF--NSD---IRVIDA 418
+ K + D P + L N D +RVI A
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 47.0 bits (111), Expect = 3e-05
Identities = 50/238 (21%), Positives = 76/238 (31%), Gaps = 67/238 (28%)
Query: 591 TLSN----TSYSVPKEIWFLVDHLYRH----------GLKQQNLFEHPGLPSEILLIRNW 636
TLS+ VP +F+ L G + P P+E L+ + +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAE-LVGK-F 64
Query: 637 LDTGSSDPLPGSVHSVAESLLLLL---ESTAEPLIPYNMHPACLTAS------TSYVQAK 687
L SS P V + L L L E+ L ++H L A T+ V+ K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIH--ALAAKLLQENDTTLVKTK 120
Query: 688 QLIASLPLCSRNVYLYLCSFLQE---------LLSHAEENRLDAKTIATLF-GQ-----I 732
+LI + Y+ + L E +A+ +A +F GQ
Sbjct: 121 ELIKN--------YITARIMAKRPFDKKSNSALFRAVGEG--NAQLVA-IFGGQGNTDDY 169
Query: 733 F--LRD-----PPRSRD--PSARGKSQTQTQARRKANFVYHFLVNDFSELIAPVNHPG 781
F LRD D + + A V+ +N L P N P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Score = 45.4 bits (107), Expect = 7e-05
Identities = 85/524 (16%), Positives = 147/524 (28%), Gaps = 181/524 (34%)
Query: 325 LTTTVDPPHIYAIGFQELDLSKEAFLFN-----ETLKEDE-----------WLRAVTKSL 368
L + P +L +E F E D+ +L V+ +
Sbjct: 16 LEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 369 HPGAAYQKICLVRLVGIRQQVDYKSVPSLKISD-HKPVMSLFNSDIRVIDAVR-----YR 422
P Q ++ L + Y L+ +D H L + + + Y
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 423 KVHEEVMKKLDKLENEFLPQVMVD-------------NTEVVFDTLR------------F 457
+ DK N L + + + NT+ F+ LR
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 458 LEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHI------EPYMGFI---LPGEKC 508
++ +TL + + F + + +WL + Y+ I P
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDKDYLLSIPISCPL-IG 242
Query: 509 DVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLFITVTGSYERSVFGCSIETLVQL 568
++L YV G+ L +L+G G S + LV
Sbjct: 243 VIQLAHYVVTAKLLGFTPGE------LRSYLKG---------------ATGHS-QGLV-- 278
Query: 569 NVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPS 628
A+ I S +S + ++ + F + G++ + + LP
Sbjct: 279 ------TAV--AIAETDSWES-FFVSVRKAI--TVLFFI------GVRCYEAYPNTSLPP 321
Query: 629 EILLIRNWLDTGSSDPLP-GSVHSVA-ESLLLLLESTAEPLIPYNMHPACLTASTSYVQA 686
IL + L+ P P S+ ++ E + + T N H
Sbjct: 322 SIL--EDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------NSH------------- 359
Query: 687 KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATLFGQIFLRDPPRS------ 740
LP + V + L N ++ G PP+S
Sbjct: 360 ------LP-AGKQVEISLV------------NGAKNLVVS---G------PPQSLYGLNL 391
Query: 741 --RDPSAR-GKSQTQTQAR-RKANFVYHFLVNDFSELIAPVNHP 780
R A G Q++ RK F FL PV P
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFL---------PVASP 426
Score = 38.9 bits (90), Expect = 0.008
Identities = 55/311 (17%), Positives = 94/311 (30%), Gaps = 110/311 (35%)
Query: 213 YWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTY 272
++ + I D+ V N N TI F G K I R Y
Sbjct: 1652 HFKDTYGFSILDI----VIN--NP-VNLTIH--------------FGGEKGKRI--RENY 1688
Query: 273 ---KYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSDWLT--- 326
++ D +EK ++K T+ S LS T
Sbjct: 1689 SAMIFETIVDGKLKTEK----------IFKEINEHSTSYTFR----SEKGLLS--ATQFT 1732
Query: 327 ----TTVDPPHIYAIGFQELDLSKEAFLFNETLKED---------EW--LRAVTKSLHPG 371
T ++ A F++L K L D E+ L ++ +
Sbjct: 1733 QPALTLME----KAA-FEDL---KSKGLIPA----DATFAGHSLGEYAALASLADVMSIE 1780
Query: 372 AAYQKICLVRLVGIRQQVDYKSVPSLKISDHKPVMSLFNSDIRVI-----DAVRYRKVHE 426
+ V +V R +VP ++ M N RV +A+ +
Sbjct: 1781 SL------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEAL------Q 1827
Query: 427 EVMKKLDKLENEFLPQVMV-DNTE---VV-------FDT----LRFLEAQNKTLIIANTG 471
V++++ K + ++ V N E V DT L F++ Q +I
Sbjct: 1828 YVVERVGKRTGWLV-EI-VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL--- 1882
Query: 472 QVPVQFEFIKK 482
Q + E ++
Sbjct: 1883 QKSLSLEEVEG 1893
Score = 28.9 bits (64), Expect = 9.1
Identities = 40/288 (13%), Positives = 75/288 (26%), Gaps = 117/288 (40%)
Query: 542 GKDLFITVTGSYERS----------------VFGCSIETLVQLNVPLRDVALGKLIELES 585
G DL Y+ S +G SI +V N
Sbjct: 1632 GMDL-------YKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---------------- 1668
Query: 586 SKDSGTLSNTSYSVPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLD-TGSSDP 644
P + G K + + E+ ++ +D ++
Sbjct: 1669 --------------PVNLTIHFG-----GEKGKRIREN----YSAMIFETIVDGKLKTEK 1705
Query: 645 LPGSVHSVAESLLL-----LLESTAEPLIPYNMHPACLTASTSYVQAKQLIASLPLCSRN 699
+ ++ + S LL +T PA + + L S+
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQ------FTQPALTLMEKAAFED--------LKSKG 1751
Query: 700 VYLYLCSF----LQE---LLSHAEENRLDAKTIATLF--GQIFLRDPPRSR--------- 741
+ +F L E L S A+ +++ + +F G PR
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIES-LVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 742 --DPSARGKSQTQTQARRKANFVYHFLVNDFS----ELIAPVNH--PG 781
+P S +Q + ++V L+ VN+
Sbjct: 1811 AINPGRVAASFSQEALQ--------YVVERVGKRTGWLVEIVNYNVEN 1850
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 112
Score = 45.6 bits (108), Expect = 3e-06
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 441 PQVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMG 500
P++ + + + A I+ N G + F C P G
Sbjct: 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGAC---FVFSPKEG 64
Query: 501 FILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHLEG-GKDLFITVTGS 552
I P +++ + + + ++++ G + + +T+ G
Sbjct: 65 IIEPSGVQAIQISF-----SSIIL----GNFEEEFLVNVNGSPEPVKLTIRGC 108
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 122
Score = 37.9 bits (88), Expect = 0.002
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 449 EVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKC 508
++ F T + K L++ N G F IEP +G + GE
Sbjct: 31 KLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--------FSIEPAIGTLNVGESM 82
Query: 509 DVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLFITVTGS 552
+++E + L++ + G+ +F+++ G+
Sbjct: 83 QLEVE------FEPQS---VGDHSGRLIVCYDTGEKVFVSLYGA 117
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 37.4 bits (86), Expect = 0.013
Identities = 27/188 (14%), Positives = 51/188 (27%), Gaps = 39/188 (20%)
Query: 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDH 209
L NKG +++ + + +H A + + F+ K+I
Sbjct: 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKD 187
Query: 210 DQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFR 269
+ I+ GDLN + Y +L+ ++
Sbjct: 188 EIIFIGGDLNVNYGTDE------------YHDMLKLLNVSSPANFNG------------- 222
Query: 270 PTYKYDVGTDDW-DSSEKNRAPAWCDRVLYKGDGIQ----------VFIGTWNVNGQS-- 316
+D T+ S AP + D + + + W+V
Sbjct: 223 QMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKT 282
Query: 317 -PSCDLSD 323
D SD
Sbjct: 283 YTYQDFSD 290
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 37.0 bits (85), Expect = 0.018
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 40/188 (21%)
Query: 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDH 209
NKG V +++ + ++ + +H + + + + F+ K+I
Sbjct: 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKD 206
Query: 210 DQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFR 269
+ +Y GDLN + ++ +L++ + G
Sbjct: 207 ETVYIGGDLNVNKGTPE------------FKDMLKNLNVNDVLYAG-------------- 240
Query: 270 PTYKYDVGTDDW-DSSEKNRAPAWCDRVLYKGDGIQVF-------------IGTWNVNGQ 315
+D ++ + N P D + D Q +
Sbjct: 241 HNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYY 300
Query: 316 SPSCDLSD 323
D SD
Sbjct: 301 YVYNDFSD 308
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 36.6 bits (84), Expect = 0.021
Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 34/188 (18%)
Query: 150 LGNKGGVAIRLDLHTTSLCFVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDH 209
L NKG V ++ + + + +HL A + + + F+ K+I ++
Sbjct: 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNN 187
Query: 210 DQIYWLGDLNYRITDLDLTKVKNLINAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFR 269
+ + GD+N + + N +Y ++ + + G
Sbjct: 188 EYVLIGGDMNVNKINAENN------NDSEYASMFKTLNASVPSYTG-------------- 227
Query: 270 PTYKYDVGTDDWDSSEKNRAPAWC-DRVLYKGDGIQVFIGTWNV-------------NGQ 315
T +D T+ +PA D ++ D V +
Sbjct: 228 HTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQK 287
Query: 316 SPSCDLSD 323
D SD
Sbjct: 288 YTYNDYSD 295
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI,
protein structure initiative; 1.80A {Caenorhabditis
elegans} SCOP: b.1.11.2
Length = 116
Score = 34.1 bits (78), Expect = 0.036
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 453 DTLRFLEAQNK-TLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDV 510
T + T I + + F+ +K ++ +Y + P GF+ K +
Sbjct: 16 PTGNYPATGGNSTHNITSESDSRLAFK-VKSSNNEHYR-----VRPVYGFVDAKGKSKL 68
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas
gingivalis W83, PSI protein structure initiative; 2.10A
{Porphyromonas gingivalis}
Length = 220
Score = 35.1 bits (80), Expect = 0.055
Identities = 18/156 (11%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 442 QVMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGF 501
+ V N ++F + L++ NT + +Q + ++ ++
Sbjct: 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVS-------LPSFVSLDDRAFR 54
Query: 502 ILPGEKCDVKLEVYVDKRCASKMNSGQDKIYDILVLHLEGGKDLF--ITVTGSYERSVFG 559
+ E +L + + + + + V E GK + V+ +
Sbjct: 55 LQAREP--RELNLSLAVPRNMPPGMKDEPLV-LEVTSPETGKKAVDSVMVSLPLVDNFPA 111
Query: 560 CSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNT 595
+ + + + +G+ ++ E++K + + N
Sbjct: 112 LTAAQTGVMELS-TYLDMGQ-LDGETTKAAIEIRNV 145
Score = 29.0 bits (64), Expect = 5.0
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 443 VMVDNTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFI 502
VM +T + L E + I N G P++ + + + L P I
Sbjct: 119 VMELSTYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRNPA------LTAVPDRTEI 171
Query: 503 LPGEKCDVKLEV 514
PG +++ V
Sbjct: 172 KPGGSTLLRIAV 183
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase,
glycosyl hydrolase family 5, mixed alpha-beta, TIM
barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB:
3vdh_A*
Length = 353
Score = 33.9 bits (77), Expect = 0.18
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 265 AIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPS 318
+H + + WDS N + K I IG + +G+S
Sbjct: 236 QVHSYDPWNFFNTKTTWDSECHNTLTEIFSALSKKFTTIPYIIGEYGTHGESDI 289
>1row_A SSP-19, MSP-domain protein like family member; beta barrel,
structural genomics, PSI, protein structure initiative;
2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Length = 109
Score = 30.2 bits (68), Expect = 0.76
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 454 TLRFLEAQ-NKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDV 510
A + T + N G + F+ IK +++ Y I P GF+ P DV
Sbjct: 9 ACTVPAAGVSSTHKLVNGGAEKIVFK-IKSSNNNEYR-----IAPVFGFVDPSGSKDV 60
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088,
protein of unknown function, protein structure
initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Length = 153
Score = 30.2 bits (68), Expect = 1.4
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 725 IATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKAN 760
IA + +R P + AR K Q A A
Sbjct: 103 IADAYDAEIVRMAPEQKLAPARRKVLIQKFATHAAR 138
>3hhw_K Nucleoprotein; protein complex, template, replication, negative
strand RNA chaperone, phosphoprotein, RNA replication,
virion; HET: TAR; 2.70A {Vesicular stomatitis indiana
virus} PDB: 2qvj_A* 3ptx_A 3hhz_K 3pto_A 3pu0_A 3pu1_A
3pu4_A 2gic_A 2wyy_A 3pmk_A
Length = 421
Score = 30.0 bits (67), Expect = 2.8
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 169 FVNSHLAAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLT 228
+ A ++F + + DS T PP+ + + W D N + T +
Sbjct: 335 YAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQ 394
Query: 229 KVKN 232
K
Sbjct: 395 YAKR 398
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 29.9 bits (68), Expect = 4.2
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 323 DWLTTTVDPPHIYAIG----------FQELDLSKEAFLFNETLKEDEWLRAVTKS--LHP 370
+ T+V +IYA+G ++L+L K K++ + + L P
Sbjct: 298 ENQRTSV--NNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTP 355
Query: 371 GAAYQKICLV-RLVGIR-QQVDYKSVPS 396
A L RL + ++ +YK +P+
Sbjct: 356 VAINAGRLLADRLFLKKTRKTNYKLIPT 383
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 29.1 bits (65), Expect = 5.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 633 IRNWLDTGSSDPLPGSVHSVAESL 656
I +LD GS P + H VA+S+
Sbjct: 78 ISQFLDLGSGLPTVQNTHEVAQSV 101
>3giw_A Protein of unknown function DUF574; rossmann-fold protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces
avermitilis} PDB: 3go4_A*
Length = 277
Score = 28.7 bits (64), Expect = 6.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 633 IRNWLDTGSSDPLPGSVHSVAESL 656
IR +LD G+ P ++H +A+S+
Sbjct: 79 IRQFLDIGTGIPTSPNLHEIAQSV 102
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 28.8 bits (64), Expect = 7.7
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 265 AIHFRPTYKYDV---GTDDWDS-SEKNRAPAWCDRVL--YKGDGIQVFIGTWNVNGQSPS 318
++H Y + + GT W S +K+ + D V + +G V IG ++ +
Sbjct: 222 SLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEFDAVYNKFVKNGRAVVIGEMGSINKNNT 281
Query: 319 CDLSDWLTTTVD 330
Sbjct: 282 AARVTHAEYYAK 293
>3msw_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.90A {Bacteroides fragilis}
Length = 145
Score = 27.9 bits (61), Expect = 8.3
Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 15/89 (16%)
Query: 239 YQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDD-----------WDSSEKN 287
+ +E +L + ++ + P Y D W+ +
Sbjct: 10 HNDTMEGGKLVCR----EIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNT 65
Query: 288 RAPAWCDRVLYKGDGIQVFIGTWNVNGQS 316
+ V WN S
Sbjct: 66 WETESRTVISRYETETSVEYSVWNKEKGS 94
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription,
epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A
3u86_A 3u88_A*
Length = 550
Score = 28.6 bits (63), Expect = 8.9
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 401 DHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENEFLPQVM-VDNTEVVFDTLRFLE 459
+ + + + VI Y + EE+ K+ ++ N+ +P ++ + + R E
Sbjct: 333 NVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGE 392
Query: 460 AQNKTLIIANTGQVPVQFEFIKKFDDS 486
T + Q P F + +F D
Sbjct: 393 QSQGTQSQGSALQDPECFAHLLRFYDG 419
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding;
2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Length = 376
Score = 28.5 bits (63), Expect = 9.9
Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 265 AIHFRPTYKYDVGTDDW-----DSSEKNRAPAWCDRVL--YKGDGIQVFIGTWNVNGQSP 317
++H Y + + + D++ K + + + GI + +G + +
Sbjct: 241 SVHAYAPYNFALNNGEGAVDKFDAAGKRDLEWNINLMKKRFVDQGIPMILGEYGAMNRDN 300
Query: 318 SCDLSDWLTTTVD 330
D + W ++
Sbjct: 301 EEDRATWAEFYME 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,053,453
Number of extensions: 739664
Number of successful extensions: 1506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 74
Length of query: 781
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 680
Effective length of database: 3,881,772
Effective search space: 2639604960
Effective search space used: 2639604960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)