RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3271
(781 letters)
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 243 bits (621), Expect = 2e-74
Identities = 102/310 (32%), Positives = 150/310 (48%), Gaps = 47/310 (15%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLT-TTVDPPHIYAIGFQEL-DLSKEAFLFNETLKEDEW 58
+++F+ ++N+NG S + L +WL IY +GFQE+ L+ + + + K EW
Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84
Query: 59 LRAVT----KSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLG 114
V G Y ++ +LVG L++F +E+ + NV TG+ G G
Sbjct: 85 ESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSG 144
Query: 115 NKGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHL 174
NKG VAIR D T L CF+ SHL
Sbjct: 145 NKGAVAIRFDYEDTGL-------------------------------------CFITSHL 167
Query: 175 AAHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLI 234
AA ++ R+ D+ I S + F +SI +HD + W GD NYRI L +V I
Sbjct: 168 AAGYTNYDERDHDYRTIASGLRFR---RGRSIFNHDYVVWFGDFNYRI-SLTYEEVVPCI 223
Query: 235 NAGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCD 294
GK + E+DQL +Q G VF + E I F PTYK+D+GTD +D+S+K+R PAW D
Sbjct: 224 AQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTD 283
Query: 295 RVLYKGDGIQ 304
R+LY+G+ +
Sbjct: 284 RILYRGELVP 293
Score = 75.6 bits (185), Expect = 3e-15
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLT-TTVDPPHIYAIGFQEL-DLSKEAFLFNETLKEDEW 360
+++F+ ++N+NG S + L +WL IY +GFQE+ L+ + + + K EW
Sbjct: 25 VKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84
Query: 361 LRAVT----KSLHPGAAYQKICLVRLVGIRQQVDYKSVPSLKISD 401
V G Y ++ +LVG + K I +
Sbjct: 85 ESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKN 129
Score = 55.6 bits (133), Expect = 1e-08
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRYRKVHEEVMKKLDKLENE 438
Y+SVP L SDH+P+ + + ++I +D + + + EE+ + + +
Sbjct: 292 VPHSYQSVP-LYYSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQEVRD 342
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 162 bits (410), Expect = 1e-45
Identities = 54/300 (18%), Positives = 95/300 (31%), Gaps = 59/300 (19%)
Query: 1 IQVFIGTWNVNGQSPSCDLSDWLTTTV-DPPHIYAIGFQELDLSKEAFLFNETLKEDEWL 59
+ V +WN + +L + L + P + A+ Q + +
Sbjct: 5 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQ------QGPAC 58
Query: 60 RAVTKSLHPGAAYQKICLVRLVGMMLIVFVEENLAQHVHNVASDTVGTGIMGKLGNKGGV 119
+SL Y K+ M L V+ E
Sbjct: 59 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKH-------------------------- 92
Query: 120 AIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLAAHTE 179
N + + GG+ ++ F S ++
Sbjct: 93 -------------LDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDV 139
Query: 180 EFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLINAGKY 239
+ T K D ++W+GDLN R+ T K+L++
Sbjct: 140 TSTNTKYAYD--------TRLDYSKKDDPSDFLFWIGDLNVRVETNA-THAKSLVDQNNI 190
Query: 240 QTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYK 299
++ DQL + + +F G+ E + F+PTYK+ TD++D + P+W DR LYK
Sbjct: 191 DGLMAFDQLKKAK-EQKLFDGWTEPQVTFKPTYKFKPNTDEYD---LSATPSWTDRALYK 246
Score = 69.7 bits (169), Expect = 2e-13
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 303 IQVFIGTWNVNGQSPSCDLSDWLTTTV-DPPHIYAIGFQELDLSKEAFLFNETLKEDEWL 361
+ V +WN + +L + L + P + A+ Q + +
Sbjct: 5 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQ------QGPAC 58
Query: 362 RAVTKSLHPGAAYQKICLVRLVGIRQQVDYKSVPSLKISDHKPVMSLFNSDIRVIDAVRY 421
+SL Y K+ + V + + + + D + +
Sbjct: 59 VKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT 118
Query: 422 R 422
Sbjct: 119 S 119
Score = 36.9 bits (84), Expect = 0.006
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 387 QQVDYKSVPSLKISDHKPVMSLFNSDI 413
Q + Y S+ + K ++H+PV++ F +
Sbjct: 254 QPLSYNSLTNYKQTEHRPVLAKFRVTL 280
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 90.6 bits (224), Expect = 2e-21
Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 41/225 (18%)
Query: 556 SVFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGL 615
FG S++ L + N +P + V +L H L
Sbjct: 5 QQFGVSLQHLQEKN------------------------PEQEPIPIVLRETVAYLQAHAL 40
Query: 616 KQQNLFEHPGLPSEILLIRNWLDTGSSDPLPG--SVHSVAESLLLLLESTAEPLIPYNMH 673
+ +F + ++ + G ++H A L L EPL+ ++++
Sbjct: 41 TTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLY 100
Query: 674 PACLTA-----STSYVQAKQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTIATL 728
P + S Q++ +LP + V +L +FL ++ +H+++N++ +A +
Sbjct: 101 PHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV 160
Query: 729 FGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSEL 773
FG L + +A N FL++ EL
Sbjct: 161 FGPNLLWAKD----------AAITLKAINPINTFTKFLLDHQGEL 195
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 83.3 bits (205), Expect = 7e-19
Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 45/228 (19%)
Query: 557 VFGCSIETLVQLNVPLRDVALGKLIELESSKDSGTLSNTSYSVPKEIWFLVDHLYRHGLK 616
V+ C + TLV+ + P + + + GLK
Sbjct: 2 VYCCDLTTLVK--------------------------AHNTQRPMVVDICIREIEARGLK 35
Query: 617 QQNLFEHPGLPSEILLIRNWLDTGSSDP-----LPGSVHSVAESLLLLLESTAEPLIPYN 671
+ L+ G I ++ D + ++ + +L L P+I Y+
Sbjct: 36 SEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYD 95
Query: 672 MHPACLTASTSYVQA------KQLIASLPLCSRNVYLYLCSFLQELLSHAEENRLDAKTI 725
+ + A+ +++ LP YL L+++ + ++N ++A+ +
Sbjct: 96 TYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENL 155
Query: 726 ATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSEL 773
+FG +R P S + T R + L+ + L
Sbjct: 156 GIVFGPTLMRPPEDS--------TLTTLHDMRYQKLIVQILIENEDVL 195
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 79.4 bits (195), Expect = 1e-17
Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 22/181 (12%)
Query: 606 LVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPL-------PGSVHSVAESLLL 658
+ + G+ +Q L+ G+ S + + + L + + ++ +L
Sbjct: 14 CIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKT 73
Query: 659 LLESTAEPLIPYNMHPACLTASTSYVQAKQL------IASLPLCSRNVYLYLCSFLQELL 712
L PL+ Y + + A+ Q ++ + LP +R + L + L ++
Sbjct: 74 YLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVA 133
Query: 713 SHAEENRLDAKTIATLFGQIFLRDPPRSRDPSARGKSQTQTQARRKANFVYHFLVNDFSE 772
+ ++N + + +FG LR + + N V L+ + +
Sbjct: 134 DNHKQNLMTVANLGVVFGPTLLRPQEE---------TVAAIMDIKFQNIVIEILIENHEK 184
Query: 773 L 773
+
Sbjct: 185 I 185
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 76.7 bits (188), Expect = 1e-16
Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 599 VPKEIWFLVDHLYRHGLKQQNLFEHPGLPSEILLIRNWLDTGSSDPLP--GSVHSVAESL 656
P + LV+ + + GL+ L+ S + +R LD + VH +A++
Sbjct: 14 APPLLIKLVEAIEKKGLECSTLYRTQS-SSNLAELRQLLDCDTPSVDLEMIDVHVLADAF 72
Query: 657 LLLLESTAEPLIPYNMHPACLTASTSYVQAKQLIA---------SLPLCSRNVYLYLCSF 707
L P+IP ++ ++ + +++ I S+P YL
Sbjct: 73 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKH 132
Query: 708 LQELLSHAEENRLDAKTIATLFGQIFLRDPPRSRDPSAR 746
+L + +N L+A+ ++ +F + R S D +
Sbjct: 133 FFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNTEN 171
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 44.6 bits (103), Expect = 2e-05
Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 18/211 (8%)
Query: 116 KGGVAIRLDLHTTSLSQHVHNVASDTVGTGIMGKLGNKGGVAIRLDLHTTSLCFVNSHLA 175
GGVAI Q+V L NKG V ++ + + + +HL
Sbjct: 94 DGGVAIVSKWPIAEKIQYVFAK------GCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQ 147
Query: 176 AHTEEFERRNQDFHDIDSRIAFTGFLPPKSIKDHDQIYWLGDLNYRITDLDLTKVKNLIN 235
A + + + F+ K+I +++ + GD+N + +
Sbjct: 148 AEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSE--- 204
Query: 236 AGKYQTILEHDQLTRQHAKGNVFLGYKEGAIHFRPTYKYDVGTDDWD---SSEKNRAPAW 292
Y ++ + + G+ + D + D +S+ + P++
Sbjct: 205 ---YASMFKTLNASVPSYTGHTAT-WDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSY 260
Query: 293 CDRVLYKGDGIQVFIGTWNVNGQSPSCDLSD 323
+ + + Q + +W D SD
Sbjct: 261 IENKVLQPKSPQWTVTSWFQK--YTYNDYSD 289
Score = 26.9 bits (57), Expect = 9.3
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 16/139 (11%)
Query: 279 DDWDSSEKNRAPAWCDRVLYKGDGIQVFIGTWNVNGQSPSCDLSDWLTTTVDPPHIYAIG 338
+ KN+ + VL GD NVN + + + +
Sbjct: 167 KEIQDFIKNKNIPNNEYVLIGGD--------MNVNKINAENNNDSEYASMFKTLNASVPS 218
Query: 339 FQELDLSKEAFLFNETLKEDEWLRAVT--------KSLHPGAAYQKICLVRLVGIRQQVD 390
+ + +A + A +P K+ +
Sbjct: 219 YTGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSW 278
Query: 391 YKSVPSLKISDHKPVMSLF 409
++ SDH PV +
Sbjct: 279 FQKYTYNDYSDHYPVEATI 297
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 124
Score = 31.0 bits (70), Expect = 0.17
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 447 NTEVVFDTLRFLEAQNKTLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGE 506
T++VF + + + + N+ + + IK + ++P G + P E
Sbjct: 12 GTKIVF-NAPYDDKHTYHIKVINSSARRIGY-GIKTTNMKRLG-----VDPPCGVLDPKE 64
Query: 507 KCDVK 511
+
Sbjct: 65 AVLLA 69
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 107
Score = 29.8 bits (67), Expect = 0.36
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 464 TLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDV 510
T + N G + F+ IK +++ Y I P GF+ P DV
Sbjct: 18 THKLVNGGAEKIVFK-IKSSNNNEYR-----IAPVFGFVDPSGSKDV 58
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 109
Score = 28.7 bits (64), Expect = 0.91
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 453 DTLRFLEAQNK-TLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKCDV 510
T + T I + + F+ K ++ +Y + P GF+ K +
Sbjct: 9 PTGNYPATGGNSTHNITSESDSRLAFKV-KSSNNEHYR-----VRPVYGFVDAKGKSKL 61
>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 96
Score = 28.4 bits (63), Expect = 0.92
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 331 PPHIYAIGFQELDLSKEAFLFNETLKEDEWLRAVTKSLHPGAAYQKICLVRLVGIRQQVD 390
P ++A+G+ + +L +E L+ K E + S L+ + +
Sbjct: 5 PSKVFAVGWNDFELEREKELWRAIRKLSEEGAFILSSSQ---------LLTRTHVETFRE 55
Query: 391 YKSVPSLKISDHKPVMSL---FNSDIRVID 417
Y +K+ + +P + F+ V+D
Sbjct: 56 YGLKIEVKLPEVRPAHQMVLVFSERTPVVD 85
Score = 26.1 bits (57), Expect = 5.7
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 29 PPHIYAIGFQELDLSKEAFLFNETLK 54
P ++A+G+ + +L +E L+ K
Sbjct: 5 PSKVFAVGWNDFELEREKELWRAIRK 30
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 152
Score = 28.8 bits (64), Expect = 1.4
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 453 DTLRFLEAQNK----TLIIANTGQVPVQFEFIKKFDDSNYCKDWLHIEPYMGFILPGEKC 508
+ L F ++ +++ N + V F+ + ++P PG
Sbjct: 25 EELYFGSIESGEKKTLIVLTNVTKNIVAFKV--RTTAPEKY----RVKPSNSSCDPGASI 78
Query: 509 DVKLEVYVDKRCASKMNSGQDK 530
D+ + S QD+
Sbjct: 79 DIIV-----SPHGGLTVSAQDR 95
>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1
and alpha-2 domains {Murine cytomegalovirus [TaxId:
10366]}
Length = 137
Score = 26.6 bits (58), Expect = 6.6
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 239 YQTILEHDQLTRQ-----HAKGNVFLGYKEGAIH 267
Y +++ TR+ H G F+GY H
Sbjct: 8 YTLVVDGTANTRRCFGTGHVDGEAFVGYSNNKTH 41
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
maritima [TaxId: 2336]}
Length = 325
Score = 27.4 bits (59), Expect = 7.0
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 267 HFRPTYKYDVGTDDWDSSEKNRAPAWCDRVLYKGD-GIQVFIGTWNVNGQSPSCDLSDWL 325
P ++ G + + + + GI+VF G ++P + WL
Sbjct: 212 KDFPVPEWPNGWHFGEYWNREKLLEHYLTWIKLRQKGIEVFCGEMGAYNKTPHDVVLKWL 271
Query: 326 TTTVD 330
++
Sbjct: 272 EDLLE 276
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 27.0 bits (58), Expect = 8.5
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 307 IGTWNVNG---QSPSCDLSDWLTTTVDPPHIYAIGFQELDLSKEAF-LFNETLKEDEWLR 362
I T N+NG L+ W+ + P + QE L+ +
Sbjct: 8 ILTLNINGLNSAIKRHRLASWIKSQ--DPSV--CCIQETHLTCRDTHRLKIKGWRKIYQA 63
Query: 363 AVTKSLHPGAAYQKICLVRLVGIRQQVDYKSVPSLKISDHKPVMSLFN 410
+ A ++ +K S + +++ N
Sbjct: 64 NGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILN 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,942,892
Number of extensions: 140009
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 26
Length of query: 781
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 689
Effective length of database: 1,144,436
Effective search space: 788516404
Effective search space used: 788516404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)