Query psy3272
Match_columns 115
No_of_seqs 105 out of 2103
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 20:49:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 7.6E-20 1.6E-24 127.3 12.8 108 2-115 361-515 (1051)
2 KOG3513|consensus 99.8 2.1E-17 4.5E-22 115.5 12.7 108 1-114 270-421 (1051)
3 PHA02826 IL-1 receptor-like pr 99.7 6.3E-15 1.4E-19 89.8 11.6 111 2-113 63-226 (227)
4 KOG4194|consensus 99.6 5.2E-15 1.1E-19 99.0 9.2 87 29-115 573-705 (873)
5 PHA02785 IL-beta-binding prote 99.6 5.5E-14 1.2E-18 90.0 13.2 97 2-105 61-203 (326)
6 cd05762 Ig8_MLCK Eighth immuno 99.6 8.6E-14 1.9E-18 74.7 9.4 66 1-68 29-96 (98)
7 KOG4221|consensus 99.6 8.2E-14 1.8E-18 98.5 11.3 109 1-114 169-326 (1381)
8 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.1E-13 2.4E-18 71.8 8.7 60 1-62 12-78 (81)
9 cd05748 Ig_Titin_like Immunogl 99.5 2.3E-13 4.9E-18 69.4 9.2 59 1-61 13-71 (74)
10 PHA02785 IL-beta-binding prote 99.5 4.1E-13 8.9E-18 86.0 12.2 100 2-108 156-321 (326)
11 cd05892 Ig_Myotilin_C C-termin 99.5 1.8E-13 4E-18 69.9 7.7 57 1-58 12-69 (75)
12 cd05855 Ig_TrkB_d5 Fifth domai 99.5 3E-13 6.6E-18 69.6 8.3 59 1-61 12-75 (79)
13 KOG4194|consensus 99.5 2.9E-13 6.3E-18 90.8 9.5 111 1-113 641-795 (873)
14 KOG4222|consensus 99.5 2E-13 4.2E-18 96.2 8.9 110 1-114 60-223 (1281)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.7E-12 3.8E-17 68.0 9.2 60 1-61 24-83 (86)
16 cd05863 Ig2_VEGFR-3 Second imm 99.5 4.3E-13 9.4E-18 67.0 6.4 48 1-58 12-59 (67)
17 cd05737 Ig_Myomesin_like_C C-t 99.5 1.8E-12 3.9E-17 68.8 8.7 59 1-61 30-89 (92)
18 KOG4222|consensus 99.4 4.5E-13 9.7E-18 94.4 7.8 110 2-114 162-313 (1281)
19 cd05744 Ig_Myotilin_C_like Imm 99.4 1.7E-12 3.7E-17 66.4 8.1 58 1-59 12-70 (75)
20 cd05893 Ig_Palladin_C C-termin 99.4 1.3E-12 2.8E-17 66.8 7.7 57 1-58 12-69 (75)
21 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.5E-12 3.2E-17 65.1 7.2 54 60-113 5-65 (67)
22 cd05746 Ig4_Peroxidasin Fourth 99.4 2.2E-12 4.8E-17 64.9 7.4 56 1-61 12-67 (69)
23 cd05852 Ig5_Contactin-1 Fifth 99.4 1.6E-12 3.4E-17 66.2 6.8 54 1-59 15-68 (73)
24 cd04975 Ig4_SCFR_like Fourth i 99.4 2.7E-12 5.9E-17 69.2 8.1 57 1-59 33-94 (101)
25 cd04976 Ig2_VEGFR Second immun 99.4 2E-12 4.3E-17 65.5 6.6 52 1-58 12-63 (71)
26 cd05743 Ig_Perlecan_D2_like Im 99.4 4.3E-12 9.3E-17 65.4 7.9 56 1-58 15-70 (78)
27 cd05750 Ig_Pro_neuregulin Immu 99.4 3.3E-12 7.2E-17 65.1 7.3 59 1-61 13-74 (75)
28 cd05853 Ig6_Contactin-4 Sixth 99.4 2.9E-12 6.2E-17 66.9 7.0 64 2-65 17-84 (85)
29 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.8E-12 3.8E-17 65.4 5.9 51 1-58 12-62 (70)
30 cd05745 Ig3_Peroxidasin Third 99.4 3.9E-12 8.5E-17 64.9 7.2 54 1-59 16-69 (74)
31 cd05747 Ig5_Titin_like M5, fif 99.4 1.2E-11 2.6E-16 65.6 9.1 59 1-61 32-90 (92)
32 cd05723 Ig4_Neogenin Fourth im 99.4 7.1E-12 1.5E-16 63.4 7.8 55 1-60 13-67 (71)
33 PF07679 I-set: Immunoglobulin 99.4 1.1E-11 2.3E-16 65.4 8.3 58 1-60 29-86 (90)
34 cd05760 Ig2_PTK7 Second immuno 99.4 1.2E-11 2.7E-16 63.5 8.4 55 1-58 12-66 (77)
35 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1.1E-11 2.4E-16 63.5 8.0 60 2-61 14-75 (76)
36 cd05859 Ig4_PDGFR-alpha Fourth 99.4 7.4E-12 1.6E-16 67.5 7.3 56 1-58 32-93 (101)
37 cd05736 Ig2_Follistatin_like S 99.4 1.3E-11 2.7E-16 63.2 7.9 56 1-58 12-67 (76)
38 cd05892 Ig_Myotilin_C C-termin 99.4 1.4E-11 3E-16 63.0 7.9 51 63-113 8-75 (75)
39 KOG4221|consensus 99.4 3.7E-12 8E-17 90.4 7.4 107 1-111 266-413 (1381)
40 cd05854 Ig6_Contactin-2 Sixth 99.3 2.2E-11 4.7E-16 63.7 8.4 63 3-65 18-84 (85)
41 cd05893 Ig_Palladin_C C-termin 99.3 1.8E-11 3.9E-16 62.6 7.7 52 62-113 7-75 (75)
42 cd04972 Ig_TrkABC_d4 Fourth do 99.3 4.1E-11 8.8E-16 63.3 9.3 58 1-60 29-86 (90)
43 cd05735 Ig8_DSCAM Eight immuno 99.3 4.2E-11 9.2E-16 63.0 9.3 65 2-67 16-86 (88)
44 cd05733 Ig6_L1-CAM_like Sixth 99.3 1.6E-11 3.5E-16 63.1 7.4 56 1-58 12-71 (77)
45 cd05868 Ig4_NrCAM Fourth immun 99.3 1.7E-11 3.7E-16 62.8 7.5 55 1-58 15-69 (76)
46 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 2.2E-11 4.7E-16 62.1 7.8 55 1-58 12-66 (74)
47 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.7E-11 3.7E-16 63.1 7.3 53 60-112 5-77 (79)
48 cd05867 Ig4_L1-CAM_like Fourth 99.3 2.4E-11 5.3E-16 62.2 7.9 54 1-58 15-69 (76)
49 cd04978 Ig4_L1-NrCAM_like Four 99.3 1.8E-11 4E-16 62.5 7.3 55 1-58 15-69 (76)
50 cd05763 Ig_1 Subgroup of the i 99.3 1.9E-11 4.1E-16 62.4 7.3 56 1-58 12-68 (75)
51 cd04969 Ig5_Contactin_like Fif 99.3 1.8E-11 4E-16 62.2 7.1 55 1-60 15-69 (73)
52 cd05745 Ig3_Peroxidasin Third 99.3 2E-11 4.3E-16 62.2 6.9 51 63-113 12-74 (74)
53 cd05876 Ig3_L1-CAM Third immun 99.3 1.7E-11 3.6E-16 62.1 6.6 55 1-60 12-66 (71)
54 cd05876 Ig3_L1-CAM Third immun 99.3 2.9E-11 6.3E-16 61.2 7.4 51 63-113 8-70 (71)
55 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.9E-11 6.2E-16 64.1 7.7 53 1-58 31-83 (91)
56 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 3.2E-11 7E-16 62.5 7.7 53 60-112 5-79 (81)
57 cd05857 Ig2_FGFR Second immuno 99.3 6.9E-11 1.5E-15 61.7 9.0 58 1-60 23-81 (85)
58 cd05859 Ig4_PDGFR-alpha Fourth 99.3 4.3E-11 9.4E-16 64.5 8.3 53 62-114 27-100 (101)
59 cd05748 Ig_Titin_like Immunogl 99.3 4.3E-11 9.3E-16 60.9 7.9 53 61-113 7-74 (74)
60 cd05757 Ig2_IL1R_like Second i 99.3 3.3E-11 7.1E-16 63.9 7.6 52 1-58 29-80 (92)
61 cd05874 Ig6_NrCAM Sixth immuno 99.3 4.9E-11 1.1E-15 61.3 8.1 56 1-58 12-71 (77)
62 cd04973 Ig1_FGFR First immunog 99.3 2.1E-11 4.5E-16 62.9 6.6 53 2-60 23-75 (79)
63 cd04974 Ig3_FGFR Third immunog 99.3 3.7E-11 8E-16 63.5 7.7 35 80-114 56-90 (90)
64 cd05864 Ig2_VEGFR-2 Second imm 99.3 2.5E-11 5.4E-16 61.2 6.5 53 61-113 6-68 (70)
65 cd05866 Ig1_NCAM-2 First immun 99.3 7.3E-11 1.6E-15 62.6 8.6 55 2-58 29-84 (92)
66 cd05891 Ig_M-protein_C C-termi 99.3 6.6E-11 1.4E-15 62.8 8.4 60 1-62 30-90 (92)
67 cd04976 Ig2_VEGFR Second immun 99.3 3.9E-11 8.4E-16 60.7 7.1 53 61-113 6-69 (71)
68 cd05851 Ig3_Contactin-1 Third 99.3 2.2E-11 4.7E-16 64.1 6.4 52 1-58 30-81 (88)
69 cd05723 Ig4_Neogenin Fourth im 99.3 4.6E-11 1E-15 60.4 7.3 51 63-113 9-71 (71)
70 cd05875 Ig6_hNeurofascin_like 99.3 8.5E-11 1.8E-15 60.4 8.4 56 1-58 12-71 (77)
71 cd05744 Ig_Myotilin_C_like Imm 99.3 6.6E-11 1.4E-15 60.5 7.9 52 62-113 7-75 (75)
72 cd05852 Ig5_Contactin-1 Fifth 99.3 4E-11 8.7E-16 61.0 7.0 51 63-113 11-73 (73)
73 cd05868 Ig4_NrCAM Fourth immun 99.3 7.4E-11 1.6E-15 60.4 7.7 52 63-114 11-76 (76)
74 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 9.8E-11 2.1E-15 61.4 8.3 51 63-113 20-86 (86)
75 cd05725 Ig3_Robo Third immunog 99.3 4.3E-11 9.3E-16 60.1 6.7 53 1-59 12-64 (69)
76 cd05762 Ig8_MLCK Eighth immuno 99.3 1E-10 2.3E-15 62.7 8.4 53 63-115 25-92 (98)
77 cd07702 Ig2_VEGFR-1 Second imm 99.3 4E-11 8.7E-16 60.7 6.3 51 1-56 12-62 (72)
78 cd05725 Ig3_Robo Third immunog 99.3 5.5E-11 1.2E-15 59.7 6.7 51 63-113 8-69 (69)
79 cd05731 Ig3_L1-CAM_like Third 99.3 5E-11 1.1E-15 60.1 6.6 54 1-59 12-65 (71)
80 cd05869 Ig5_NCAM-1 Fifth immun 99.3 9.2E-11 2E-15 62.8 7.9 59 1-59 31-92 (97)
81 cd05730 Ig3_NCAM-1_like Third 99.3 1.1E-10 2.3E-15 62.3 8.1 55 1-58 32-86 (95)
82 cd05728 Ig4_Contactin-2-like F 99.2 7.5E-11 1.6E-15 61.7 7.3 54 1-60 28-81 (85)
83 cd04970 Ig6_Contactin_like Six 99.2 9.5E-11 2E-15 61.3 7.7 63 3-65 18-84 (85)
84 cd05851 Ig3_Contactin-1 Third 99.2 1.1E-10 2.4E-15 61.4 8.0 63 39-114 15-88 (88)
85 cd04975 Ig4_SCFR_like Fourth i 99.2 1.7E-10 3.8E-15 62.1 8.5 53 62-114 27-100 (101)
86 cd05763 Ig_1 Subgroup of the i 99.2 7.5E-11 1.6E-15 60.2 6.6 52 63-114 8-75 (75)
87 cd05731 Ig3_L1-CAM_like Third 99.2 9.6E-11 2.1E-15 59.1 6.9 51 63-113 8-70 (71)
88 cd05857 Ig2_FGFR Second immuno 99.2 2.2E-10 4.8E-15 59.7 8.4 64 37-113 6-85 (85)
89 cd05737 Ig_Myomesin_like_C C-t 99.2 1.9E-10 4.1E-15 61.0 8.2 62 39-113 15-92 (92)
90 cd05867 Ig4_L1-CAM_like Fourth 99.2 2.4E-10 5.1E-15 58.5 8.2 51 63-113 11-75 (76)
91 cd05732 Ig5_NCAM-1_like Fifth 99.2 1.8E-10 3.9E-15 61.4 8.0 60 1-60 30-92 (96)
92 cd05756 Ig1_IL1R_like First im 99.2 7.7E-11 1.7E-15 62.7 6.4 57 2-60 34-90 (94)
93 cd05897 Ig2_IL1R2_like Second 99.2 8.4E-11 1.8E-15 62.5 6.4 54 2-58 30-83 (95)
94 cd05760 Ig2_PTK7 Second immuno 99.2 2.5E-10 5.4E-15 58.6 8.0 52 63-114 8-75 (77)
95 cd05865 Ig1_NCAM-1 First immun 99.2 1.2E-10 2.5E-15 62.3 6.8 58 2-60 31-91 (96)
96 cd05870 Ig5_NCAM-2 Fifth immun 99.2 2.8E-10 6E-15 61.0 8.2 36 78-113 63-98 (98)
97 cd05856 Ig2_FGFRL1-like Second 99.2 1.5E-10 3.3E-15 59.8 7.0 57 1-61 23-79 (82)
98 cd04969 Ig5_Contactin_like Fif 99.2 2.1E-10 4.6E-15 58.2 7.3 51 63-113 11-73 (73)
99 cd05726 Ig4_Robo Fhird immunog 99.2 2.3E-10 5E-15 60.4 7.7 36 79-114 47-82 (90)
100 cd05869 Ig5_NCAM-1 Fifth immun 99.2 4.6E-10 9.9E-15 60.1 8.8 35 79-113 63-97 (97)
101 cd04968 Ig3_Contactin_like Thi 99.2 3.8E-10 8.3E-15 59.3 8.2 63 39-114 15-88 (88)
102 cd05870 Ig5_NCAM-2 Fifth immun 99.2 4.8E-10 1E-14 60.1 8.6 59 1-59 30-93 (98)
103 cd05858 Ig3_FGFR-2 Third immun 99.2 2.3E-10 5E-15 60.4 7.2 36 79-114 55-90 (90)
104 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 3.6E-10 7.9E-15 56.8 7.6 53 1-61 15-67 (69)
105 cd05746 Ig4_Peroxidasin Fourth 99.2 1.3E-10 2.7E-15 58.5 5.8 49 63-111 8-68 (69)
106 cd04978 Ig4_L1-NrCAM_like Four 99.2 3.4E-10 7.3E-15 57.8 7.5 52 63-114 11-76 (76)
107 cd04972 Ig_TrkABC_d4 Fourth do 99.2 8.9E-10 1.9E-14 58.2 9.1 63 38-113 13-90 (90)
108 cd05854 Ig6_Contactin-2 Sixth 99.2 8.9E-10 1.9E-14 57.6 9.0 37 78-114 46-82 (85)
109 cd05726 Ig4_Robo Fhird immunog 99.2 3.2E-10 6.9E-15 59.9 7.3 61 1-64 15-83 (90)
110 cd05728 Ig4_Contactin-2-like F 99.2 3.8E-10 8.2E-15 59.0 7.4 63 38-113 12-85 (85)
111 cd05724 Ig2_Robo Second immuno 99.2 2.9E-10 6.3E-15 59.4 6.9 54 1-58 26-79 (86)
112 cd05865 Ig1_NCAM-1 First immun 99.2 8.4E-10 1.8E-14 59.0 8.7 35 79-113 60-95 (96)
113 cd05735 Ig8_DSCAM Eight immuno 99.2 1E-09 2.2E-14 57.7 8.9 36 79-114 47-82 (88)
114 cd04968 Ig3_Contactin_like Thi 99.2 2.6E-10 5.6E-15 59.9 6.6 52 1-58 30-81 (88)
115 cd05848 Ig1_Contactin-5 First 99.2 7.9E-10 1.7E-14 58.9 8.3 54 1-58 33-87 (94)
116 cd05764 Ig_2 Subgroup of the i 99.1 6.7E-10 1.4E-14 56.5 7.7 55 1-60 15-70 (74)
117 cd05730 Ig3_NCAM-1_like Third 99.1 7.4E-10 1.6E-14 59.0 8.2 63 39-114 17-93 (95)
118 cd05856 Ig2_FGFRL1-like Second 99.1 9.8E-10 2.1E-14 56.8 8.4 51 63-113 19-82 (82)
119 cd05850 Ig1_Contactin-2 First 99.1 8.4E-10 1.8E-14 58.8 8.2 54 1-58 33-87 (94)
120 cd05764 Ig_2 Subgroup of the i 99.1 1.1E-09 2.4E-14 55.7 8.1 51 63-113 11-74 (74)
121 cd05736 Ig2_Follistatin_like S 99.1 1E-09 2.2E-14 56.1 7.9 52 63-114 8-74 (76)
122 cd05732 Ig5_NCAM-1_like Fifth 99.1 1.4E-09 3E-14 57.9 8.7 36 78-113 61-96 (96)
123 cd04977 Ig1_NCAM-1_like First 99.1 1.5E-09 3.4E-14 57.5 8.2 53 1-55 28-82 (92)
124 cd05765 Ig_3 Subgroup of the i 99.1 1.2E-09 2.6E-14 56.4 7.6 35 79-113 47-81 (81)
125 PF07679 I-set: Immunoglobulin 99.1 1.3E-09 2.8E-14 57.3 7.7 75 38-113 13-90 (90)
126 cd05773 Ig8_hNephrin_like Eigh 99.1 2.3E-09 5E-14 58.6 8.9 61 1-62 37-102 (109)
127 cd05858 Ig3_FGFR-2 Third immun 99.1 9.1E-10 2E-14 58.1 7.0 29 30-58 55-83 (90)
128 cd05849 Ig1_Contactin-1 First 99.1 1.6E-09 3.5E-14 57.6 7.9 53 1-58 33-86 (93)
129 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 1.4E-09 3E-14 55.4 7.2 51 63-113 8-73 (74)
130 cd04974 Ig3_FGFR Third immunog 99.1 1.7E-09 3.7E-14 57.1 7.7 30 29-58 54-83 (90)
131 cd04967 Ig1_Contactin First Ig 99.1 1.8E-09 3.8E-14 57.1 7.6 54 1-58 33-87 (91)
132 cd05758 Ig5_KIRREL3-like Fifth 99.1 4.3E-09 9.2E-14 56.4 8.9 60 2-61 31-96 (98)
133 cd05747 Ig5_Titin_like M5, fif 99.1 3.6E-09 7.7E-14 56.1 8.5 61 38-111 16-91 (92)
134 cd05891 Ig_M-protein_C C-termi 99.1 3.3E-09 7.1E-14 56.3 8.2 35 79-113 58-92 (92)
135 cd07702 Ig2_VEGFR-1 Second imm 99.1 1.4E-09 3.1E-14 55.0 6.4 50 60-109 5-66 (72)
136 cd05740 Ig_CEACAM_D4 Fourth im 99.1 3.5E-09 7.6E-14 56.0 8.1 62 38-113 16-90 (91)
137 cd04970 Ig6_Contactin_like Six 99.0 5.2E-09 1.1E-13 54.6 8.2 37 78-114 46-82 (85)
138 cd05743 Ig_Perlecan_D2_like Im 99.0 4.3E-09 9.4E-14 54.1 7.6 34 78-111 41-74 (78)
139 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.2E-08 2.7E-13 53.1 9.4 38 78-115 45-84 (84)
140 cd05853 Ig6_Contactin-4 Sixth 99.0 3.7E-09 8.1E-14 55.2 7.1 37 78-114 46-82 (85)
141 cd05734 Ig7_DSCAM Seventh immu 99.0 3.2E-09 7E-14 54.7 6.7 35 79-113 44-79 (79)
142 cd05765 Ig_3 Subgroup of the i 99.0 3.9E-09 8.4E-14 54.4 7.0 60 1-60 15-77 (81)
143 cd05866 Ig1_NCAM-2 First immun 99.0 8.9E-09 1.9E-13 54.6 8.5 75 37-113 12-91 (92)
144 cd05773 Ig8_hNephrin_like Eigh 99.0 7.5E-09 1.6E-13 56.6 8.3 36 79-114 69-105 (109)
145 cd05729 Ig2_FGFR_like Second i 99.0 1.5E-08 3.1E-13 52.6 8.9 57 2-60 24-81 (85)
146 cd05722 Ig1_Neogenin First imm 99.0 7.2E-09 1.6E-13 55.2 7.7 55 1-58 28-88 (95)
147 cd05739 Ig3_RPTP_IIa_LAR_like 99.0 1.1E-08 2.4E-13 51.4 7.9 47 63-111 11-68 (69)
148 cd05752 Ig1_FcgammaR_like Frst 99.0 2.3E-09 4.9E-14 55.2 5.3 45 3-60 32-76 (78)
149 cd05734 Ig7_DSCAM Seventh immu 99.0 4.9E-09 1.1E-13 54.0 6.6 55 1-58 12-72 (79)
150 cd05750 Ig_Pro_neuregulin Immu 99.0 6E-09 1.3E-13 53.0 6.9 33 78-110 42-74 (75)
151 cd05873 Ig_Sema4D_like Immunog 99.0 2E-09 4.3E-14 56.4 5.1 46 2-52 25-70 (87)
152 PHA02826 IL-1 receptor-like pr 99.0 4E-09 8.6E-14 64.6 6.9 48 2-53 164-211 (227)
153 cd05742 Ig1_VEGFR_like First i 99.0 1.2E-08 2.7E-13 53.0 7.8 36 78-113 48-83 (84)
154 cd05742 Ig1_VEGFR_like First i 98.9 3.6E-09 7.9E-14 55.1 5.6 57 2-58 18-77 (84)
155 cd05724 Ig2_Robo Second immuno 98.9 1E-08 2.2E-13 53.5 7.3 35 79-113 51-86 (86)
156 cd07693 Ig1_Robo First immunog 98.9 2.6E-08 5.6E-13 53.2 8.4 58 1-58 30-92 (100)
157 cd04979 Ig_Semaphorin_C Immuno 98.9 5.9E-09 1.3E-13 54.9 5.3 48 2-53 25-74 (89)
158 cd04973 Ig1_FGFR First immunog 98.9 2.2E-08 4.7E-13 51.6 7.3 34 80-113 46-79 (79)
159 cd05733 Ig6_L1-CAM_like Sixth 98.9 1.5E-08 3.3E-13 51.9 6.5 45 63-107 8-71 (77)
160 cd05850 Ig1_Contactin-2 First 98.9 5.6E-08 1.2E-12 51.7 8.9 59 40-111 19-92 (94)
161 cd05754 Ig3_Perlecan_like Thir 98.9 8E-09 1.7E-13 53.9 5.3 51 2-60 32-82 (85)
162 cd04977 Ig1_NCAM-1_like First 98.9 4.3E-08 9.4E-13 51.9 8.2 75 37-113 12-92 (92)
163 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 1.5E-08 3.2E-13 52.9 6.2 53 2-54 16-70 (84)
164 cd05848 Ig1_Contactin-5 First 98.8 6.8E-08 1.5E-12 51.4 8.3 58 41-111 20-92 (94)
165 cd05756 Ig1_IL1R_like First im 98.8 2E-08 4.3E-13 53.5 6.1 35 79-113 60-94 (94)
166 cd05753 Ig2_FcgammaR_like Seco 98.8 1.2E-08 2.6E-13 53.1 5.1 47 2-58 30-76 (83)
167 cd05895 Ig_Pro_neuregulin-1 Im 98.8 2.6E-08 5.7E-13 50.8 6.2 34 77-110 42-75 (76)
168 cd05749 Ig2_Tyro3_like Second 98.8 3.2E-08 6.9E-13 51.3 6.1 48 1-58 27-75 (81)
169 cd05874 Ig6_NrCAM Sixth immuno 98.8 5.8E-08 1.3E-12 49.8 7.1 48 63-110 8-75 (77)
170 cd05849 Ig1_Contactin-1 First 98.8 7.1E-08 1.5E-12 51.2 7.5 49 63-111 29-91 (93)
171 cd05722 Ig1_Neogenin First imm 98.8 8E-08 1.7E-12 51.1 7.6 61 40-113 14-95 (95)
172 cd07693 Ig1_Robo First immunog 98.8 6.3E-08 1.4E-12 51.6 7.2 28 86-113 71-99 (100)
173 cd05729 Ig2_FGFR_like Second i 98.8 1.8E-07 3.8E-12 48.4 8.7 36 78-113 50-85 (85)
174 smart00408 IGc2 Immunoglobulin 98.8 5.3E-08 1.1E-12 47.2 6.2 46 2-53 17-62 (63)
175 cd05885 Ig2_Necl-4 Second immu 98.8 2.6E-08 5.5E-13 51.3 5.1 55 1-55 14-68 (80)
176 cd05754 Ig3_Perlecan_like Thir 98.8 7.3E-08 1.6E-12 50.2 7.0 62 38-111 14-84 (85)
177 cd05757 Ig2_IL1R_like Second i 98.8 5.5E-08 1.2E-12 51.5 6.5 42 66-107 28-80 (92)
178 cd05875 Ig6_hNeurofascin_like 98.8 1.3E-07 2.9E-12 48.4 7.6 45 63-107 8-71 (77)
179 cd05758 Ig5_KIRREL3-like Fifth 98.8 1.1E-07 2.4E-12 50.9 7.5 33 79-111 64-97 (98)
180 cd07701 Ig1_Necl-3 First (N-te 98.7 1.4E-07 3E-12 50.3 6.8 50 2-53 27-85 (95)
181 cd05862 Ig1_VEGFR First immuno 98.7 5.7E-08 1.2E-12 50.9 5.0 38 78-115 49-86 (86)
182 cd05727 Ig2_Contactin-2-like S 98.7 4.1E-08 8.9E-13 52.3 4.5 50 2-53 34-83 (96)
183 smart00410 IG_like Immunoglobu 98.7 7.8E-07 1.7E-11 45.5 9.1 55 2-58 24-79 (86)
184 smart00409 IG Immunoglobulin. 98.7 7.8E-07 1.7E-11 45.5 9.1 55 2-58 24-79 (86)
185 cd05898 Ig5_KIRREL3 Fifth immu 98.7 5.9E-07 1.3E-11 48.1 8.4 59 3-61 33-96 (98)
186 cd05871 Ig_Semaphorin_classIII 98.7 1.1E-07 2.3E-12 50.4 5.4 51 2-56 25-80 (91)
187 PF00047 ig: Immunoglobulin do 98.7 3.4E-08 7.3E-13 48.6 3.3 46 2-49 17-64 (64)
188 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 2E-07 4.4E-12 50.1 6.4 53 3-55 42-95 (104)
189 cd05749 Ig2_Tyro3_like Second 98.6 4.4E-07 9.6E-12 47.0 7.4 55 38-107 11-75 (81)
190 cd05897 Ig2_IL1R2_like Second 98.6 1.6E-07 3.5E-12 50.0 5.8 36 79-114 55-94 (95)
191 cd04967 Ig1_Contactin First Ig 98.6 6.3E-07 1.4E-11 47.3 8.1 45 63-107 29-87 (91)
192 cd05771 IgC_Tapasin_R Tapasin- 98.6 5.6E-07 1.2E-11 51.2 8.4 28 31-58 2-29 (139)
193 cd05882 Ig1_Necl-1 First (N-te 98.6 5.7E-07 1.2E-11 48.0 7.9 51 1-51 26-83 (95)
194 cd07690 Ig1_CD4 First immunogl 98.6 2.2E-07 4.7E-12 49.4 5.6 29 28-56 63-91 (94)
195 cd05882 Ig1_Necl-1 First (N-te 98.6 8.9E-07 1.9E-11 47.2 7.8 34 78-112 61-94 (95)
196 cd05898 Ig5_KIRREL3 Fifth immu 98.5 3E-06 6.6E-11 45.4 8.8 75 37-111 13-97 (98)
197 cd05871 Ig_Semaphorin_classIII 98.5 1.2E-06 2.5E-11 46.4 6.6 37 79-115 53-90 (91)
198 cd05759 Ig2_KIRREL3-like Secon 98.5 1.6E-06 3.5E-11 44.8 7.0 50 2-53 15-69 (82)
199 cd05713 Ig_MOG_like Immunoglob 98.5 1.5E-06 3.3E-11 46.5 7.1 31 28-58 63-93 (100)
200 cd05860 Ig4_SCFR Fourth immuno 98.5 5.5E-06 1.2E-10 44.5 8.9 56 59-114 24-100 (101)
201 cd05886 Ig1_Nectin-1_like Firs 98.5 5.6E-07 1.2E-11 48.3 5.1 38 77-114 61-99 (99)
202 cd05872 Ig_Sema4B_like Immunog 98.5 1.2E-06 2.6E-11 45.7 6.1 43 2-50 25-67 (85)
203 cd05752 Ig1_FcgammaR_like Frst 98.5 1.5E-06 3.3E-11 44.6 6.3 50 38-101 13-68 (78)
204 cd04979 Ig_Semaphorin_C Immuno 98.4 2.1E-06 4.7E-11 45.0 6.9 36 80-115 52-88 (89)
205 cd05862 Ig1_VEGFR First immuno 98.4 1.2E-06 2.5E-11 45.9 5.7 56 3-58 19-78 (86)
206 cd05717 Ig1_Necl-1-3_like Firs 98.4 2E-06 4.4E-11 45.7 6.7 52 2-53 27-85 (95)
207 cd05900 Ig_Aggrecan Immunoglob 98.4 2.6E-06 5.6E-11 46.8 6.7 38 27-64 71-110 (112)
208 cd05753 Ig2_FcgammaR_like Seco 98.4 2.2E-06 4.7E-11 44.5 5.7 36 78-113 47-83 (83)
209 cd05713 Ig_MOG_like Immunoglob 98.4 1.6E-06 3.6E-11 46.4 5.4 37 77-113 63-99 (100)
210 cd07701 Ig1_Necl-3 First (N-te 98.3 7.2E-06 1.6E-10 43.7 7.2 37 76-113 59-95 (95)
211 cd05888 Ig1_Nectin-4_like Frst 98.3 2.3E-06 5E-11 46.0 5.3 37 77-113 62-99 (100)
212 cd05727 Ig2_Contactin-2-like S 98.3 1E-06 2.2E-11 47.0 3.5 28 78-105 59-86 (96)
213 cd05877 Ig_LP_like Immunoglobu 98.3 2.9E-06 6.2E-11 46.0 5.0 38 77-114 66-103 (106)
214 PF13895 Ig_2: Immunoglobulin 98.3 1.9E-06 4.2E-11 43.8 4.2 44 2-57 29-72 (80)
215 cd05714 Ig_CSPGs_LP Immunoglob 98.3 2.8E-06 6.2E-11 46.0 4.9 39 76-114 65-103 (106)
216 cd05718 Ig1_PVR_like First imm 98.3 1.1E-05 2.4E-10 42.9 7.2 31 28-58 60-91 (98)
217 cd05877 Ig_LP_like Immunoglobu 98.3 1.3E-05 2.8E-10 43.4 7.5 36 28-63 66-103 (106)
218 cd05718 Ig1_PVR_like First imm 98.2 5E-06 1.1E-10 44.3 5.3 38 77-114 60-98 (98)
219 cd05881 Ig1_Necl-2 First (N-te 98.2 2.2E-05 4.7E-10 41.9 7.5 51 3-53 28-85 (95)
220 cd05845 Ig2_L1-CAM_like Second 98.2 4E-06 8.6E-11 44.6 4.6 49 1-53 33-82 (95)
221 smart00408 IGc2 Immunoglobulin 98.2 1.6E-05 3.4E-10 38.2 6.4 26 78-103 38-63 (63)
222 PHA03376 BARF1; Provisional 98.2 2.9E-05 6.2E-10 46.1 7.9 31 27-57 84-114 (221)
223 smart00409 IG Immunoglobulin. 98.2 2.7E-05 5.8E-10 39.6 7.3 45 69-113 41-85 (86)
224 smart00410 IG_like Immunoglobu 98.2 2.7E-05 5.8E-10 39.6 7.3 45 69-113 41-85 (86)
225 cd05878 Ig_Aggrecan_like Immun 98.1 1.1E-05 2.5E-10 44.1 5.2 39 76-114 69-107 (110)
226 cd05900 Ig_Aggrecan Immunoglob 98.1 1.6E-05 3.5E-10 43.6 5.8 38 77-114 72-109 (112)
227 cd05775 Ig_SLAM-CD84_like_N N- 98.1 3.5E-05 7.7E-10 41.1 6.9 30 27-56 58-87 (97)
228 cd05887 Ig1_Nectin-3_like Firs 98.1 1.4E-05 3.1E-10 42.6 5.2 38 77-114 58-96 (96)
229 PF13895 Ig_2: Immunoglobulin 98.1 3.9E-05 8.4E-10 38.9 6.7 62 39-113 13-80 (80)
230 cd05879 Ig_P0 Immunoglobulin ( 98.1 2.5E-05 5.5E-10 43.1 6.2 28 27-54 77-104 (116)
231 cd05901 Ig_Versican Immunoglob 98.1 0.00012 2.5E-09 40.5 8.6 35 28-62 77-113 (117)
232 cd00099 IgV Immunoglobulin var 98.1 2.1E-05 4.5E-10 42.3 5.5 37 18-54 53-91 (105)
233 cd05889 Ig1_DNAM-1_like First 98.0 5.5E-05 1.2E-09 40.4 6.9 34 28-61 58-92 (96)
234 cd05741 Ig_CEACAM_D1_like Firs 98.0 3.5E-05 7.5E-10 40.5 6.2 25 29-53 56-80 (92)
235 PHA02987 Ig domain OX-2-like p 98.0 3.8E-05 8.2E-10 45.4 6.2 51 2-52 46-107 (189)
236 cd07690 Ig1_CD4 First immunogl 98.0 4.8E-05 1E-09 40.5 6.1 30 76-105 62-91 (94)
237 cd05717 Ig1_Necl-1-3_like Firs 98.0 2.6E-05 5.7E-10 41.4 5.1 36 77-113 60-95 (95)
238 cd05885 Ig2_Necl-4 Second immu 98.0 5.1E-05 1.1E-09 39.1 5.9 42 63-104 10-68 (80)
239 cd05873 Ig_Sema4D_like Immunog 98.0 2.8E-05 6E-10 40.8 5.0 23 80-102 49-71 (87)
240 cd05774 Ig_CEACAM_D1 First imm 98.0 6.2E-05 1.3E-09 40.9 6.5 26 28-53 68-93 (105)
241 cd05887 Ig1_Nectin-3_like Firs 98.0 8E-05 1.7E-09 39.8 6.8 27 27-53 57-83 (96)
242 cd05883 Ig2_Necl-2 Second immu 98.0 8.6E-05 1.9E-09 38.5 6.6 49 2-53 15-67 (82)
243 cd05860 Ig4_SCFR Fourth immuno 98.0 9E-05 2E-09 39.8 6.8 56 4-59 36-94 (101)
244 cd05901 Ig_Versican Immunoglob 98.0 3.5E-05 7.5E-10 42.6 5.4 38 77-114 77-114 (117)
245 cd05775 Ig_SLAM-CD84_like_N N- 98.0 5.6E-05 1.2E-09 40.4 6.1 39 75-113 57-96 (97)
246 cd05902 Ig_Neurocan Immunoglob 98.0 2.2E-05 4.8E-10 43.0 4.5 38 77-114 70-107 (110)
247 cd04983 IgV_TCR_alpha_like Imm 98.0 4.9E-05 1.1E-09 41.2 5.9 36 18-53 56-93 (109)
248 cd05886 Ig1_Nectin-1_like Firs 98.0 3.1E-05 6.8E-10 41.6 5.0 30 28-57 61-91 (99)
249 cd05845 Ig2_L1-CAM_like Second 98.0 1.7E-05 3.8E-10 42.2 3.8 43 63-105 29-85 (95)
250 cd05878 Ig_Aggrecan_like Immun 97.9 8.1E-05 1.8E-09 40.7 6.5 35 28-62 70-106 (110)
251 cd05751 Ig1_LILRB1_like First 97.9 2.1E-05 4.5E-10 41.5 4.0 46 2-52 30-75 (91)
252 cd05846 Ig1_MRC-OX-2_like Firs 97.9 6.3E-05 1.4E-09 40.1 5.9 26 28-53 59-84 (97)
253 PF13927 Ig_3: Immunoglobulin 97.9 1.4E-05 3E-10 40.0 3.1 25 27-51 51-75 (75)
254 PHA02633 hypothetical protein; 97.9 5.5E-05 1.2E-09 36.6 4.9 38 77-114 16-53 (63)
255 cd05879 Ig_P0 Immunoglobulin ( 97.9 4E-05 8.6E-10 42.4 4.9 44 69-112 68-115 (116)
256 cd05714 Ig_CSPGs_LP Immunoglob 97.9 4.1E-05 8.9E-10 41.4 4.7 36 27-62 65-102 (106)
257 cd05896 Ig1_IL1RAPL-1_like Fir 97.9 4.3E-05 9.4E-10 41.2 4.6 35 79-113 70-104 (104)
258 cd05741 Ig_CEACAM_D1_like Firs 97.8 5.6E-05 1.2E-09 39.7 4.6 34 79-112 57-91 (92)
259 cd05846 Ig1_MRC-OX-2_like Firs 97.8 6.3E-05 1.4E-09 40.1 4.7 37 77-113 59-96 (97)
260 cd05774 Ig_CEACAM_D1 First imm 97.8 6.1E-05 1.3E-09 40.9 4.6 35 79-113 70-105 (105)
261 cd05881 Ig1_Necl-2 First (N-te 97.8 0.001 2.2E-08 35.5 10.0 35 67-101 49-84 (95)
262 cd07705 Ig2_Necl-1 Second immu 97.8 0.00028 6E-09 36.6 6.7 50 2-53 15-69 (83)
263 cd05902 Ig_Neurocan Immunoglob 97.8 0.00014 3E-09 39.8 5.8 35 28-62 70-106 (110)
264 cd05715 Ig_P0-like Immunoglobu 97.8 7.2E-05 1.6E-09 41.2 4.8 37 77-113 78-116 (116)
265 cd00096 Ig Immunoglobulin doma 97.8 0.00013 2.9E-09 35.2 5.4 52 2-53 13-66 (74)
266 cd05761 Ig2_Necl-1-4_like Seco 97.7 0.00015 3.3E-09 37.5 5.1 49 2-53 15-68 (82)
267 cd04984 IgV_L_lambda Immunoglo 97.7 0.00026 5.7E-09 37.7 6.1 33 19-51 52-84 (98)
268 PF00047 ig: Immunoglobulin do 97.7 0.00016 3.4E-09 35.3 4.8 18 81-98 47-64 (64)
269 cd05751 Ig1_LILRB1_like First 97.7 0.00055 1.2E-08 36.0 7.0 26 76-101 50-75 (91)
270 cd05880 Ig_EVA1 Immunoglobulin 97.7 0.00012 2.7E-09 40.3 4.5 36 77-112 77-114 (115)
271 cd05899 IgV_TCR_beta Immunoglo 97.7 0.00015 3.3E-09 39.5 4.8 25 28-52 70-94 (110)
272 cd04982 IgV_TCR_gamma Immunogl 97.7 0.00025 5.4E-09 38.9 5.7 33 19-51 64-98 (116)
273 cd05759 Ig2_KIRREL3-like Secon 97.6 0.00077 1.7E-08 34.7 7.0 32 80-111 47-80 (82)
274 cd05888 Ig1_Nectin-4_like Frst 97.6 0.00021 4.5E-09 38.4 5.0 24 28-51 62-85 (100)
275 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.00012 2.5E-09 38.9 3.8 46 3-50 30-75 (94)
276 cd05889 Ig1_DNAM-1_like First 97.6 0.00026 5.6E-09 37.8 5.0 35 77-111 58-93 (96)
277 cd00098 IgC Immunoglobulin Con 97.6 0.00016 3.5E-09 38.1 4.0 51 2-54 30-86 (95)
278 PF07686 V-set: Immunoglobulin 97.6 0.00053 1.1E-08 37.0 6.1 46 68-113 66-114 (114)
279 PF13927 Ig_3: Immunoglobulin 97.5 0.00011 2.4E-09 36.6 2.9 23 78-100 53-75 (75)
280 cd04980 IgV_L_kappa Immunoglob 97.5 0.0004 8.7E-09 37.6 5.2 32 20-51 61-92 (106)
281 cd00099 IgV Immunoglobulin var 97.5 0.00026 5.7E-09 38.0 4.3 27 77-103 65-91 (105)
282 cd05884 Ig2_Necl-3 Second immu 97.4 0.00097 2.1E-08 34.6 5.7 50 2-53 15-69 (83)
283 cd05880 Ig_EVA1 Immunoglobulin 97.4 0.00033 7E-09 38.6 3.8 27 28-54 77-103 (115)
284 cd04983 IgV_TCR_alpha_like Imm 97.4 0.0009 1.9E-08 36.2 5.2 26 77-102 68-93 (109)
285 cd04984 IgV_L_lambda Immunoglo 97.3 0.00075 1.6E-08 35.9 4.5 33 69-101 53-85 (98)
286 cd05716 Ig_pIgR Immunoglobulin 97.3 0.0028 6.1E-08 33.7 6.4 27 27-53 61-87 (98)
287 cd05715 Ig_P0-like Immunoglobu 97.2 0.00076 1.6E-08 37.1 4.1 26 29-54 79-104 (116)
288 smart00406 IGv Immunoglobulin 97.2 0.00058 1.3E-08 34.6 3.4 23 27-49 59-81 (81)
289 cd07694 Ig2_CD4 Second immunog 97.2 0.0021 4.5E-08 33.6 5.3 48 3-58 32-79 (88)
290 cd04980 IgV_L_kappa Immunoglob 97.2 0.00077 1.7E-08 36.4 3.7 33 69-101 61-93 (106)
291 cd05755 Ig2_ICAM-1_like Second 97.2 0.0016 3.4E-08 35.1 4.7 50 3-53 35-85 (100)
292 PF07354 Sp38: Zona-pellucida- 97.2 0.00094 2E-08 41.6 4.2 47 2-53 13-60 (271)
293 KOG3515|consensus 97.2 0.0013 2.9E-08 46.6 5.4 93 2-101 38-185 (741)
294 cd05899 IgV_TCR_beta Immunoglo 97.1 0.00095 2.1E-08 36.3 3.9 35 68-102 60-95 (110)
295 PHA03376 BARF1; Provisional 97.1 0.0034 7.4E-08 37.6 6.3 32 73-104 81-112 (221)
296 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0015 3.3E-08 32.4 4.1 37 3-51 18-54 (69)
297 cd07706 IgV_TCR_delta Immunogl 97.1 0.0018 4E-08 35.5 4.9 34 18-51 58-93 (116)
298 PF07686 V-set: Immunoglobulin 97.1 0.0033 7.2E-08 33.8 5.8 25 28-52 77-101 (114)
299 smart00407 IGc1 Immunoglobulin 97.1 0.0049 1.1E-07 31.2 6.0 50 3-52 17-70 (75)
300 cd05716 Ig_pIgR Immunoglobulin 97.1 0.0013 2.9E-08 34.9 3.8 28 76-103 61-88 (98)
301 smart00406 IGv Immunoglobulin 97.0 0.0011 2.3E-08 33.6 3.3 23 76-98 59-81 (81)
302 cd05872 Ig_Sema4B_like Immunog 97.0 0.0021 4.7E-08 33.5 4.3 34 81-114 49-83 (85)
303 cd05720 Ig_CD8_alpha Immunoglo 97.0 0.0015 3.2E-08 35.3 3.7 33 68-100 58-90 (104)
304 cd04982 IgV_TCR_gamma Immunogl 96.9 0.022 4.7E-07 31.2 10.2 34 68-101 64-99 (116)
305 cd05712 Ig_Siglec_N Immunoglob 96.9 0.0024 5.3E-08 35.3 4.0 26 26-51 76-101 (119)
306 PHA02987 Ig domain OX-2-like p 96.8 0.0044 9.6E-08 36.9 5.0 42 73-114 79-122 (189)
307 cd07692 Ig_CD3_epsilon Immunog 96.8 0.0043 9.3E-08 30.6 3.8 36 3-51 20-55 (65)
308 cd07706 IgV_TCR_delta Immunogl 96.7 0.0033 7.2E-08 34.5 3.7 34 68-101 59-94 (116)
309 PHA02633 hypothetical protein; 96.6 0.0084 1.8E-07 29.2 4.2 26 28-53 16-41 (63)
310 cd05720 Ig_CD8_alpha Immunoglo 96.6 0.0044 9.5E-08 33.5 3.7 30 21-50 60-89 (104)
311 cd05770 IgC_beta2m Class I maj 96.6 0.017 3.7E-07 30.6 5.6 47 3-52 33-82 (93)
312 cd05772 IgC_SIRP Signal-regula 96.5 0.022 4.7E-07 31.3 6.1 48 3-53 39-92 (111)
313 cd04981 IgV_H Immunoglobulin ( 96.5 0.01 2.2E-07 32.8 4.6 33 19-51 63-97 (117)
314 cd07700 IgV_CD8_beta Immunoglo 96.4 0.0053 1.1E-07 33.3 3.3 26 76-101 69-94 (107)
315 cd07694 Ig2_CD4 Second immunog 96.3 0.038 8.2E-07 29.0 5.9 37 78-114 50-86 (88)
316 cd00096 Ig Immunoglobulin doma 96.1 0.018 3.9E-07 27.3 4.1 26 78-103 42-67 (74)
317 cd05712 Ig_Siglec_N Immunoglob 96.1 0.015 3.3E-07 32.1 4.0 33 69-101 68-102 (119)
318 PF08205 C2-set_2: CD80-like C 96.1 0.077 1.7E-06 27.5 6.7 52 1-54 29-85 (89)
319 cd05711 Ig_FcalphaRI Immunoglo 96.0 0.018 3.8E-07 30.5 3.9 22 78-99 54-75 (94)
320 cd05767 IgC_MHC_II_alpha Class 95.9 0.055 1.2E-06 28.7 5.4 45 3-52 33-83 (94)
321 cd05847 IgC_CH2_IgE CH2 domain 95.8 0.044 9.6E-07 29.1 4.9 51 3-53 32-86 (94)
322 cd07698 IgC_MHC_I_alpha3 Class 95.8 0.059 1.3E-06 28.4 5.4 48 3-53 32-83 (93)
323 cd05766 IgC_MHC_II_beta Class 95.7 0.093 2E-06 27.8 5.8 48 3-53 32-83 (94)
324 cd07699 IgC_L Immunoglobulin C 95.6 0.038 8.3E-07 29.6 4.1 51 3-53 35-89 (100)
325 cd07700 IgV_CD8_beta Immunoglo 95.6 0.023 5E-07 30.7 3.3 23 28-50 70-92 (107)
326 cd05771 IgC_Tapasin_R Tapasin- 95.5 0.1 2.2E-06 29.6 5.9 24 30-53 108-131 (139)
327 PF11465 Receptor_2B4: Natural 95.4 0.065 1.4E-06 29.1 4.6 34 25-58 66-99 (108)
328 PF08204 V-set_CD47: CD47 immu 95.3 0.046 9.9E-07 30.9 4.0 33 29-62 85-117 (130)
329 cd05719 Ig2_PVR_like Second im 95.3 0.19 4.1E-06 26.7 6.3 23 30-53 59-82 (95)
330 PF07654 C1-set: Immunoglobuli 95.3 0.17 3.7E-06 25.9 5.9 46 3-53 26-77 (83)
331 cd07697 IgC_TCR_gamma T cell r 95.3 0.087 1.9E-06 28.1 4.8 13 3-15 34-46 (96)
332 PHA02982 hypothetical protein; 95.2 0.073 1.6E-06 32.5 4.8 36 18-53 88-123 (251)
333 cd05761 Ig2_Necl-1-4_like Seco 95.2 0.11 2.4E-06 26.7 5.1 24 81-104 47-70 (82)
334 PF11465 Receptor_2B4: Natural 95.0 0.13 2.9E-06 27.9 5.0 39 76-114 68-107 (108)
335 cd05883 Ig2_Necl-2 Second immu 95.0 0.22 4.8E-06 25.8 6.4 33 80-113 45-79 (82)
336 PF07354 Sp38: Zona-pellucida- 95.0 0.041 8.9E-07 34.6 3.3 25 78-102 36-60 (271)
337 cd04981 IgV_H Immunoglobulin ( 94.7 0.36 7.8E-06 26.6 9.4 57 44-100 29-97 (117)
338 cd07703 Ig2_Nectin-2_like Seco 94.6 0.14 3.1E-06 27.2 4.5 23 30-53 59-82 (95)
339 PF05790 C2-set: Immunoglobuli 94.6 0.15 3.2E-06 26.3 4.4 28 31-58 44-72 (80)
340 cd07691 Ig_CD3_gamma_delta Imm 94.5 0.21 4.6E-06 24.9 4.7 23 78-100 32-54 (69)
341 PHA03042 CD47-like protein; Pr 94.3 0.26 5.6E-06 31.4 5.7 51 3-62 52-102 (286)
342 cd05768 IgC_CH4 CH4 domain (fo 94.2 0.16 3.4E-06 27.4 4.2 51 3-53 34-91 (102)
343 PF08205 C2-set_2: CD80-like C 94.1 0.4 8.6E-06 24.7 6.7 26 80-105 62-87 (89)
344 PHA02914 Immunoglobulin-like d 94.0 0.8 1.7E-05 30.9 7.6 35 79-113 346-380 (500)
345 PHA02982 hypothetical protein; 93.9 0.74 1.6E-05 28.3 6.9 37 69-105 90-126 (251)
346 cd07705 Ig2_Necl-1 Second immu 93.8 0.46 9.9E-06 24.5 6.8 24 81-104 48-71 (83)
347 KOG3515|consensus 93.3 0.85 1.8E-05 33.3 7.4 57 2-60 432-488 (741)
348 cd05769 IgC_TCR_beta T cell re 93.1 0.61 1.3E-05 25.8 5.4 51 3-53 36-92 (115)
349 KOG1480|consensus 92.8 0.045 9.7E-07 39.4 0.7 51 3-58 161-211 (909)
350 PF08204 V-set_CD47: CD47 immu 92.6 0.31 6.6E-06 27.6 3.8 35 78-113 85-119 (130)
351 cd05719 Ig2_PVR_like Second im 92.5 0.68 1.5E-05 24.6 4.9 42 63-105 26-85 (95)
352 cd05721 IgV_CTLA-4 Immunoglobu 91.7 0.41 9E-06 26.5 3.5 26 25-50 69-94 (115)
353 cd05884 Ig2_Necl-3 Second immu 90.8 1.3 2.9E-05 22.8 6.3 25 80-104 47-71 (83)
354 cd04985 IgC_CH1 CH1 domain (fi 90.7 1.4 2.9E-05 23.4 4.9 48 3-53 34-87 (95)
355 cd07696 IgC_CH3 CH3 domain (th 90.3 1.7 3.7E-05 23.1 6.4 12 42-53 75-86 (96)
356 PF05790 C2-set: Immunoglobuli 90.2 1.6 3.4E-05 22.5 5.2 35 80-114 44-79 (80)
357 cd07703 Ig2_Nectin-2_like Seco 89.8 1.4 3E-05 23.5 4.4 45 63-108 26-88 (95)
358 cd07704 Ig2_Nectin-3-4_like Se 86.3 0.45 9.8E-06 25.5 1.2 48 1-53 32-84 (97)
359 cd07689 Ig2_VCAM-1 Second immu 83.1 4 8.7E-05 22.0 3.9 47 3-52 34-85 (99)
360 PHA03042 CD47-like protein; Pr 81.2 12 0.00026 24.2 7.5 26 87-112 78-103 (286)
361 cd04986 IgC_CH2 CH2 domain (se 81.0 2 4.4E-05 23.1 2.4 49 3-53 38-89 (99)
362 PHA02914 Immunoglobulin-like d 79.7 7.8 0.00017 26.5 5.1 36 78-113 80-116 (500)
363 cd05721 IgV_CTLA-4 Immunoglobu 79.0 9 0.00019 21.3 7.2 24 76-99 71-94 (115)
364 KOG4597|consensus 77.6 4 8.6E-05 28.4 3.3 31 28-58 255-285 (560)
365 KOG4597|consensus 76.7 3.6 7.9E-05 28.6 3.0 55 59-113 217-291 (560)
366 PF01688 Herpes_gI: Alphaherpe 76.1 12 0.00026 22.2 4.6 26 27-52 121-146 (161)
367 KOG1480|consensus 74.9 2.7 5.9E-05 31.0 2.2 27 79-105 183-209 (909)
368 PHA03282 envelope glycoprotein 68.0 15 0.00033 25.7 4.3 34 27-60 330-364 (540)
369 PHA03189 UL14 tegument protein 67.7 33 0.00072 22.7 5.6 20 85-104 139-158 (348)
370 PHA03283 envelope glycoprotein 65.2 48 0.001 23.7 8.5 27 28-54 132-158 (542)
371 PHA03282 envelope glycoprotein 64.1 23 0.00049 24.9 4.5 36 78-113 123-160 (540)
372 PHA03283 envelope glycoprotein 63.7 49 0.0011 23.7 6.1 37 77-113 132-168 (542)
373 PHA03286 envelope glycoprotein 61.1 55 0.0012 23.0 7.8 28 28-55 125-152 (492)
374 PF01688 Herpes_gI: Alphaherpe 61.0 30 0.00065 20.6 4.2 28 78-105 123-150 (161)
375 KOG0613|consensus 59.6 6.6 0.00014 30.6 1.7 89 2-108 219-307 (1205)
376 PHA03290 envelope glycoprotein 53.5 27 0.00059 23.3 3.5 27 27-53 126-152 (357)
377 PHA03289 envelope glycoprotein 52.0 57 0.0012 21.8 4.7 28 27-54 119-146 (352)
378 COG5475 Uncharacterized small 51.8 28 0.0006 16.7 3.9 27 27-55 15-41 (60)
379 cd05890 Ig2_Nectin-1_like Seco 48.4 44 0.00096 18.1 3.4 49 63-111 31-96 (98)
380 PHA03270 envelope glycoprotein 47.4 98 0.0021 21.8 7.4 13 3-15 253-265 (466)
381 PHA03292 envelope glycoprotein 46.6 39 0.00085 23.1 3.5 27 27-53 125-151 (413)
382 PF11327 DUF3129: Protein of u 42.6 78 0.0017 19.2 4.4 30 26-55 89-118 (184)
383 PF11049 KSHV_K1: Glycoprotein 42.5 45 0.00098 16.6 2.5 13 3-15 12-24 (71)
384 PF02480 Herpes_gE: Alphaherpe 39.9 56 0.0012 22.8 3.6 26 27-52 266-291 (439)
385 PHA03289 envelope glycoprotein 38.8 99 0.0022 20.8 4.3 26 79-104 122-147 (352)
386 PHA03281 envelope glycoprotein 38.4 88 0.0019 22.7 4.3 36 27-62 472-508 (642)
387 PHA03291 envelope glycoprotein 36.1 1.3E+02 0.0028 20.6 4.6 29 27-55 126-154 (401)
388 PHA03290 envelope glycoprotein 35.7 1.2E+02 0.0025 20.6 4.3 28 77-104 127-154 (357)
389 PF06328 Lep_receptor_Ig: Ig-l 35.4 72 0.0016 16.8 4.1 45 2-50 38-82 (89)
390 COG4953 PbpC Membrane carboxyp 34.6 91 0.002 23.3 4.0 43 3-58 684-726 (733)
391 PHA03292 envelope glycoprotein 34.3 1.2E+02 0.0025 21.0 4.2 28 78-105 127-154 (413)
392 PF15096 G6B: G6B family 33.8 42 0.00092 20.5 2.0 15 87-101 82-96 (224)
393 PF13220 DUF4028: Protein of u 32.9 53 0.0012 15.5 1.9 15 90-104 9-23 (65)
394 PHA02935 Hypothetical protein; 32.4 58 0.0013 20.2 2.5 35 79-113 102-137 (349)
395 PF06651 DUF1163: Protein of u 32.2 62 0.0013 16.2 2.1 21 79-99 23-45 (70)
396 PF06832 BiPBP_C: Penicillin-B 31.9 79 0.0017 16.2 6.0 42 2-56 43-84 (89)
397 PF08043 Xin: Xin repeat; Int 31.6 34 0.00073 11.9 1.1 11 3-13 5-15 (16)
398 PF05566 Pox_vIL-18BP: Orthopo 31.5 99 0.0021 17.2 4.0 32 80-111 94-125 (126)
399 PHA03286 envelope glycoprotein 30.9 1.6E+02 0.0035 20.9 4.5 37 77-113 125-162 (492)
400 PF13540 RCC1_2: Regulator of 28.1 54 0.0012 13.1 1.4 13 91-103 17-29 (30)
401 PF10420 IL12p40_C: Cytokine i 22.6 1.3E+02 0.0029 15.7 3.1 13 89-101 11-23 (82)
402 PHA03273 envelope glycoprotein 22.5 3E+02 0.0065 19.7 8.0 51 3-53 269-325 (486)
403 PF10572 UPF0556: Uncharacteri 21.7 1.9E+02 0.0042 17.2 4.1 9 43-51 44-52 (158)
404 PF05955 Herpes_gp2: Equine he 21.2 2.1E+02 0.0046 17.5 4.4 52 1-52 122-178 (226)
405 PRK09919 anti-adapter protein 21.1 1.7E+02 0.0037 16.4 4.5 34 4-39 30-68 (114)
406 PF02124 Marek_A: Marek's dise 20.6 2.3E+02 0.0051 17.8 11.3 51 3-54 8-64 (211)
No 1
>KOG3513|consensus
Probab=99.84 E-value=7.6e-20 Score=127.35 Aligned_cols=108 Identities=32% Similarity=0.533 Sum_probs=92.5
Q ss_pred cceEEEECCEEeCCCCCCC---EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE--------------
Q psy3272 2 GMMSWYQDTFLIEPSVSDR---RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-------------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-------------- 62 (115)
|+|+|++||.++.. ..+ +.+ ....|+|.+++..|+|.|.|.+.|..|...+ .|.|
T Consensus 361 p~v~WlkNg~pl~~--~~r~~~~~i----~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~ 434 (1051)
T KOG3513|consen 361 PTVKWLKNGEPLEP--AERDPRYKI----DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVER 434 (1051)
T ss_pred CceEEeeCCeecCc--cCCCcceEE----eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccce
Confidence 79999999999986 444 444 3678999999999999999999999988877 5555
Q ss_pred ----------------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 ----------------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ----------------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
+|.|.|.+.|.+.+. .++|.|.+++++|+|.|+|.|+|.+|..+....|.|.
T Consensus 435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred EEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe
Confidence 568888899987653 3489999999999999999999999999999999886
Q ss_pred C
Q psy3272 115 E 115 (115)
Q Consensus 115 ~ 115 (115)
+
T Consensus 515 d 515 (1051)
T KOG3513|consen 515 D 515 (1051)
T ss_pred c
Confidence 3
No 2
>KOG3513|consensus
Probab=99.76 E-value=2.1e-17 Score=115.48 Aligned_cols=108 Identities=31% Similarity=0.411 Sum_probs=89.7
Q ss_pred CcceEEEECCE-EeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272 1 MGMMSWYQDTF-LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--------------- 62 (115)
Q Consensus 1 ~p~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--------------- 62 (115)
.|+|.|.|.+. +++. +. .....+..|.|.+++.+|+|.|.|.+.|..|.... .+.|
T Consensus 270 ~P~i~W~k~~g~~~~~----r~--~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~ 343 (1051)
T KOG3513|consen 270 TPQIKWRKVDGKPPPR----RA--TYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEA 343 (1051)
T ss_pred CCcEEEEeCCCCCCCc----ce--eeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEe
Confidence 48999999776 4433 21 12335788999999999999999999999997766 4444
Q ss_pred ------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 ------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|.+.|.+++. ...|.|+++..+|+|.|.|.|.|..|..-+.+.|.|+
T Consensus 344 ~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~ 421 (1051)
T KOG3513|consen 344 DTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL 421 (1051)
T ss_pred cCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence 679999999998772 3489999999999999999999999999999999886
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.65 E-value=6.3e-15 Score=89.76 Aligned_cols=111 Identities=22% Similarity=0.239 Sum_probs=75.3
Q ss_pred cceEEEECCEEe--CCCCCCC---E--E-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEE---------
Q psy3272 2 GMMSWYQDTFLI--EPSVSDR---R--L-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MEL--------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~--~~~~~~~---~--~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v--------- 62 (115)
++|+|+|++... .. ...+ . . ......+..|.|.+++.+|+|.|.|.+.+..+..... +.|
T Consensus 63 ~~V~W~k~~s~~~v~~-~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~ 141 (227)
T PHA02826 63 YNVTWSKTDSLAFVRD-SGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQF 141 (227)
T ss_pred ccEEEEeCCeEEEEEc-CCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceE
Confidence 489999987642 11 0111 0 0 0011235689999999999999999999877655443 333
Q ss_pred -------------e----cccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccc----eeeE
Q psy3272 63 -------------S----VSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGR----AKKY 108 (115)
Q Consensus 63 -------------~----g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~----~~~~ 108 (115)
. |.|.|.+.|.+++. ...|.|.+++.+|+|.|+|.+...... .++.
T Consensus 142 ~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~ 221 (227)
T PHA02826 142 NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKE 221 (227)
T ss_pred ecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEE
Confidence 1 24578899988653 236999999999999999999986532 4455
Q ss_pred EEEEE
Q psy3272 109 MELSE 113 (115)
Q Consensus 109 ~~l~v 113 (115)
+.|.|
T Consensus 222 ~~~~~ 226 (227)
T PHA02826 222 YKVTI 226 (227)
T ss_pred EEEEE
Confidence 55544
No 4
>KOG4194|consensus
Probab=99.62 E-value=5.2e-15 Score=98.96 Aligned_cols=87 Identities=29% Similarity=0.441 Sum_probs=75.9
Q ss_pred eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------------------ecccCCcEEEEEeCCe
Q psy3272 29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------------------SVSVSDRRLMETRGNK 78 (115)
Q Consensus 29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------------------~g~~~~~~~~~~~~~~ 78 (115)
...|++.+++..|+|.|.|++.|.+|...+ .+.| .|.|.|.+.|-++++.
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 467899999999999999999999988877 4444 6799999999887642
Q ss_pred ----------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272 79 ----------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115 (115)
Q Consensus 79 ----------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~ 115 (115)
-.+.|.++..+|.|.|+|.|+|..|..+..+.|.|.|
T Consensus 653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e 705 (873)
T KOG4194|consen 653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE 705 (873)
T ss_pred CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence 2689999999999999999999999999999998864
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.61 E-value=5.5e-14 Score=89.97 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=68.2
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------- 62 (115)
|+|+|+|+|.... + .... ..+..|.|.++..+|+|.|.|.+.|..+.... .|.|
T Consensus 61 ~~i~W~K~g~~~~-----~-~~~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~ 133 (326)
T PHA02785 61 LDILWEKRGADND-----R-IIPI-DNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIV 133 (326)
T ss_pred ceEEEEECCCccc-----e-EEEc-cCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeecccee
Confidence 6799999874211 1 1111 13445778999999999999999987654443 3333
Q ss_pred -----------------ecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 63 -----------------SVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 63 -----------------~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
.+.|.+.+.|.+... ...|.|.+++.+|.|.|+|.+.|..+..
T Consensus 134 ~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 134 NERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred cccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence 135566777755321 2479999999999999999999988764
No 6
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.57 E-value=8.6e-14 Score=74.69 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=55.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCC
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSD 68 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~ 68 (115)
.|++.|+|++.++.. ..++.+......+.|.|.++..+|+|.|+|.+.|..|.... .|.|.+.|.|
T Consensus 29 ~p~v~W~kdg~~l~~--~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 29 PITCTWMKFRKQIQE--GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred CCceEEEECCEEecC--CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCC
Confidence 478999999999976 66776666666789999999999999999999999998887 5666666654
No 7
>KOG4221|consensus
Probab=99.56 E-value=8.2e-14 Score=98.53 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=85.3
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL--------------- 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v--------------- 62 (115)
.|.|.|.|+..+++. ..++.+ .....|.|.++++.|.|.|.|.+.+......+ .+.|
T Consensus 169 ~p~i~w~kn~~pl~~--~~r~i~---lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~ 243 (1381)
T KOG4221|consen 169 VPTIMWLKNDQPLPL--DSRVIV---LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDE 243 (1381)
T ss_pred CceeEEecccccccC--CCcEEE---cCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecC
Confidence 368999999998888 555433 46788999999999999999999876543333 3443
Q ss_pred ------------------ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 63 ------------------SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 63 ------------------~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
.|.|.|.+.|..++. ...|.|.+++..|+|.|+|.|.|......+...|
T Consensus 244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev 323 (1381)
T KOG4221|consen 244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEV 323 (1381)
T ss_pred CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEE
Confidence 568899999988653 2368999999999999999999977666666666
Q ss_pred EEe
Q psy3272 112 SEL 114 (115)
Q Consensus 112 ~v~ 114 (115)
.|+
T Consensus 324 ~V~ 326 (1381)
T KOG4221|consen 324 TVL 326 (1381)
T ss_pred EEE
Confidence 664
No 8
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.55 E-value=1.1e-13 Score=71.75 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=46.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEE-------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMET-------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v 62 (115)
.|.|+|+|+|.++.. ........ ......|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 12 ~P~v~W~k~g~~i~~--~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 12 KPTLTWYHNGAVLNE--SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred CCcEEEEECCEECcC--CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 489999999999876 44332211 1235679999999999999999999999998876554
No 9
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.54 E-value=2.3e-13 Score=69.44 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=49.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.++|+|+|..+.. ..++.+........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 13 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 13 TPTVTWSKDGKPLKL--SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred CCeEEEEECCEEcCC--CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 489999999998866 66666655566789999999999999999999999988877444
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.54 E-value=4.1e-13 Score=85.97 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=69.2
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE------EEEE-------------
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------YMEL------------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~------~~~v------------- 62 (115)
|.|+|+++.. +. ..++.. .....|.|.+++.+|.|.|+|.+.+..+.... .+.|
T Consensus 156 ~~i~W~k~~~-~~---~~r~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~ 228 (326)
T PHA02785 156 ADIIWSGHRR-LR---NKRLKQ---RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPE 228 (326)
T ss_pred ceEEEccCCc-cC---CcceEe---cCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCC
Confidence 6899998642 22 233322 23468999999999999999999986654322 1221
Q ss_pred ----------------ecccC---CcEEEEEeCC----------------------------eEEEEEeccCCCCCeeeE
Q psy3272 63 ----------------SVSVS---DRRLMETRGN----------------------------KHTLTIKNVQSTDFGNYS 95 (115)
Q Consensus 63 ----------------~g~~~---~~~~~~~~~~----------------------------~~~l~i~~~~~~d~G~y~ 95 (115)
.|.|. +.+.|.+++. ...|.|.++..+|.|.|+
T Consensus 229 ~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~ 308 (326)
T PHA02785 229 GVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFT 308 (326)
T ss_pred cEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeE
Confidence 34554 3677876531 136899999999999999
Q ss_pred EEeecCccceeeE
Q psy3272 96 CVADNNLGRAKKY 108 (115)
Q Consensus 96 C~~~n~~~~~~~~ 108 (115)
|.|.|..+...+.
T Consensus 309 C~A~n~~~~~~~~ 321 (326)
T PHA02785 309 CMAFTIPSISKTV 321 (326)
T ss_pred EEEEeccCceEee
Confidence 9999988654443
No 11
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=1.8e-13 Score=69.94 Aligned_cols=57 Identities=28% Similarity=0.360 Sum_probs=45.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++..+... .+++.+.... ....|.|.++..+|+|.|+|.+.|..|....
T Consensus 12 ~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05892 12 PPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC 69 (75)
T ss_pred CCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence 4899999999988741 3455543322 3358999999999999999999999988876
No 12
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.51 E-value=3e-13 Score=69.62 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=45.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEE-----EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLME-----TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|+|+|||+|.+|.. ..+.... .......|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 12 ~Pti~W~kng~~l~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~ 75 (79)
T cd05855 12 KPTLQWFHEGAILNE--SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS 75 (79)
T ss_pred CCceEEEECCEECCC--CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence 489999999999976 4443211 1123568999999999999999999999998877544
No 13
>KOG4194|consensus
Probab=99.50 E-value=2.9e-13 Score=90.84 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=84.0
Q ss_pred CcceEEEECCEE-eCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272 1 MGMMSWYQDTFL-IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--------------- 62 (115)
Q Consensus 1 ~p~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--------------- 62 (115)
.|.|.|-|+|.. ++.....|..+ -.....+.|.+++.+|.|.|+|.+.+..|...+ ++.|
T Consensus 641 ~PeIawqkdggtdFPAA~eRRl~V--mpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V 718 (873)
T KOG4194|consen 641 RPEIAWQKDGGTDFPAARERRLHV--MPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLV 718 (873)
T ss_pred CcceeehhcCCCCCchhhhheeee--cCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEE
Confidence 489999998875 66533343322 234566789999999999999999998888777 5655
Q ss_pred ------------ecccC-CcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 ------------SVSVS-DRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ------------~g~~~-~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|. |+..|++++ ...-|++.+...+|+|.|+|...|..|.....+.+.+
T Consensus 719 ~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 719 VVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred EecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence 34554 888887754 3456889999999999999999999998766665554
No 14
>KOG4222|consensus
Probab=99.50 E-value=2e-13 Score=96.18 Aligned_cols=110 Identities=30% Similarity=0.396 Sum_probs=76.4
Q ss_pred CcceEEEECCEEe-CCCC-CCCEEEEEeCCeEEEEEecC-----CCCCCeEEEEEeecCCcceeE---EEEE--------
Q psy3272 1 MGMMSWYQDTFLI-EPSV-SDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNNLGRAKK---YMEL-------- 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~-~~~~-~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~~~~~~~~---~~~v-------- 62 (115)
.|+|.|||+|... ..++ ..++. .....|.+..+ ...|.|.|.|.+.+..+.+.+ .+.+
T Consensus 60 pPti~w~k~G~~~~~~e~~shR~~----lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfr 135 (1281)
T KOG4222|consen 60 PPTIEWYKDGENVFKGEPGSHRFL----LPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFR 135 (1281)
T ss_pred CCceecccCCcccCCCCCCCccee----cCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcc
Confidence 4799999999633 3321 22222 22333332221 123889999999999888877 4444
Q ss_pred ---------------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccce-e
Q psy3272 63 ---------------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRA-K 106 (115)
Q Consensus 63 ---------------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~ 106 (115)
.|.|.+.++|.+++. ...|.|.++++.|.|+|.|.++|..|.. +
T Consensus 136 v~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 136 VSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred cCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccccc
Confidence 567888888888763 2369999999999999999999999984 4
Q ss_pred eEEEEEEe
Q psy3272 107 KYMELSEL 114 (115)
Q Consensus 107 ~~~~l~v~ 114 (115)
....|+|.
T Consensus 216 ~~A~lsv~ 223 (1281)
T KOG4222|consen 216 IPARLSVQ 223 (1281)
T ss_pred ccceeeec
Confidence 46666664
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.46 E-value=1.7e-12 Score=68.04 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=48.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.|+|+|++.++... ..++.+........|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 24 ~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 24 APTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred CCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 4899999999988641 34566555556788999999999999999999999998877443
No 16
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=4.3e-13 Score=67.02 Aligned_cols=48 Identities=31% Similarity=0.478 Sum_probs=40.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.++|||||.++.. . .....|.|.++..+|+|.|+|.+.|..+....
T Consensus 12 ~P~v~W~kdg~~l~~--~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~ 59 (67)
T cd05863 12 PPEFQWYKDGKLISG--K--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEK 59 (67)
T ss_pred CCEEEEEECCEECcc--c--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEE
Confidence 489999999998864 1 13568999999999999999999999886655
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.45 E-value=1.8e-12 Score=68.80 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=47.6
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.|.|+|++.++.. .+++.+... .....|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 30 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 30 DPEVSWLKNDQALAL--SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred CCeEEEEECCEECcc--CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 378999999999876 666655433 34568999999999999999999999988877443
No 18
>KOG4222|consensus
Probab=99.45 E-value=4.5e-13 Score=94.42 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=87.0
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------- 62 (115)
|.|.|.|+|+++......++.+ -.+..|.|.++...|+|.|.|++.|..+...+ .+.|
T Consensus 162 ptvSw~Kdg~pl~~~~~~~~~l---isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~ 238 (1281)
T KOG4222|consen 162 PTVSWVKDGKPLDHYDVPIIAL---ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVL 238 (1281)
T ss_pred CcceeecCCCccccccceeEEE---ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceee
Confidence 7899999999887411222221 24677999999999999999999998877766 4554
Q ss_pred -----------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 -----------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 -----------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|++.|.+++. ..+|.|.++...|.|+|.|.+.|..|..+....++|.
T Consensus 239 ~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ 313 (1281)
T KOG4222|consen 239 VGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ 313 (1281)
T ss_pred cccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe
Confidence 568888888887552 2478889999999999999999999998887777774
No 19
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.45 E-value=1.7e-12 Score=66.41 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=45.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|+|+|++..+... ..++.+... .....|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus 12 ~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (75)
T cd05744 12 PPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN 70 (75)
T ss_pred CCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence 4899999999988742 345544322 234579999999999999999999999888773
No 20
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.45 E-value=1.3e-12 Score=66.79 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=44.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++... ..++...... ....|.|.++..+|+|.|+|.+.|..|....
T Consensus 12 ~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05893 12 HPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC 69 (75)
T ss_pred CCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 4899999999988641 3455543322 2347999999999999999999999988877
No 21
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.44 E-value=1.5e-12 Score=65.12 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=45.4
Q ss_pred EEEecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 60 MELSVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 60 ~~v~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|..++.+.+.+
T Consensus 5 c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 5 VKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 345899999999998763 347999999999999999999999998777666654
No 22
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=2.2e-12 Score=64.92 Aligned_cols=56 Identities=29% Similarity=0.484 Sum_probs=45.1
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.|+|+|++.++.. ..++.+ .....|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 12 ~p~i~W~k~g~~~~~--~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 12 EPTITWNKDGVQVTE--SGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CCEEEEEECCEECCC--CCCEEE---CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 478999999988865 555443 23568999999999999999999999988876443
No 23
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.42 E-value=1.6e-12 Score=66.17 Aligned_cols=54 Identities=31% Similarity=0.497 Sum_probs=44.3
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|+|+|++..+.. ..++.+. ....|.|.++..+|.|.|.|.+.|..+.....
T Consensus 15 ~p~v~W~k~~~~l~~--~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 15 KPKFSWSKGTELLVN--NSRISIW---DDGSLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CCEEEEEeCCEeccc--CCCEEEc---CCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 378999999987765 5665542 34579999999999999999999999888773
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.42 E-value=2.7e-12 Score=69.18 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=43.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEe-----CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|.|+|||.++.. ......... .....|.|..+.++|+|.|+|.+.|..|.....
T Consensus 33 ~p~v~W~Kdg~~i~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t 94 (101)
T cd04975 33 PPHINWTYDNRTLTN--KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT 94 (101)
T ss_pred CCccEEEeCCeeCCC--CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence 368999999999975 333222211 125789999999999999999999999887763
No 25
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=2e-12 Score=65.46 Aligned_cols=52 Identities=35% Similarity=0.606 Sum_probs=42.4
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.++|+|+|.++.. ..++ ......|.|.++..+|+|.|+|.+.|..+....
T Consensus 12 ~p~v~W~k~g~~l~~--~~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~ 63 (71)
T cd04976 12 PPEIQWYKNGKLISE--KNRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEK 63 (71)
T ss_pred CCEEEEEECCEECCC--CCEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEE
Confidence 478999999998876 4332 234578999999999999999999998877655
No 26
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=4.3e-12 Score=65.35 Aligned_cols=56 Identities=29% Similarity=0.426 Sum_probs=46.6
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|++++..+.. ..++.+........|.|.++..+|+|.|.|.+.|..|....
T Consensus 15 ~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 15 TPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 479999999988876 56666555556688999999999999999999998887765
No 27
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.40 E-value=3.3e-12 Score=65.15 Aligned_cols=59 Identities=20% Similarity=0.442 Sum_probs=45.2
Q ss_pred CcceEEEECCEEeCCCCCCCE---EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRR---LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.+.|+|++.++.. ..+. ..........|.|.++..+|.|.|.|.+.|..|.....+.
T Consensus 13 ~p~~~W~k~g~~l~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 13 SLRFKWFKDGKELNR--KNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CceEEEEcCCeeccc--cCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 378999999998875 3322 2323345678999999999999999999999988766543
No 28
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.40 E-value=2.9e-12 Score=66.87 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=46.8
Q ss_pred cceEEEECCEEeCCC-CCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272 2 GMMSWYQDTFLIEPS-VSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS 65 (115)
Q Consensus 2 p~v~W~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~ 65 (115)
+.|.|+|||.+|... ...++.... ......|.|.+++..|+|.|+|.+.+..+...+ .|.|.|.
T Consensus 17 ~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 17 IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence 578999999999742 123333211 124568999999999999999999998877776 5666544
No 29
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=1.8e-12 Score=65.44 Aligned_cols=51 Identities=27% Similarity=0.410 Sum_probs=41.1
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.++|+|+|.++.. ..++ ..+..|.|.++..+|+|.|+|.+.|..|....
T Consensus 12 ~P~v~W~k~g~~l~~--~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 12 PPEVKWYKNGQLIVL--NHTF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CCEEEEEECCEECCC--CCEE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence 489999999999875 3322 13457999999999999999999999876655
No 30
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.39 E-value=3.9e-12 Score=64.85 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=43.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|+|+|++..+.. ..++.. .....|.|.++..+|+|.|.|.+.|..|.....
T Consensus 16 ~p~i~W~k~g~~~~~--~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 16 QPVIAWTKGGSQLSV--DRRHLV---LSSGTLRISRVALHDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred CCEEEEEECCEECCC--CCCeEE---ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence 479999999998876 444433 234589999999999999999999998887763
No 31
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.38 E-value=1.2e-11 Score=65.61 Aligned_cols=59 Identities=27% Similarity=0.482 Sum_probs=48.3
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.+.|+|++..+.. ..++.+........|.|.++..+|.|.|.|.+.|..|.....+.
T Consensus 32 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 32 APTVTWMREGQIIVS--SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred CCEEEEEECCEECCC--CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 378999999998876 56666655555789999999999999999999999988776443
No 32
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=7.1e-12 Score=63.42 Aligned_cols=55 Identities=24% Similarity=0.500 Sum_probs=43.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|+|+|++..+.. ..++... ....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 13 ~p~v~W~k~g~~~~~--~~~~~~~---~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 13 TPTVKWVKNGDMVIP--SDYFKIV---KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred CCEEEEEECCeECCC--CCCEEEE---ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 479999999988765 5554432 234578889999999999999999998887743
No 33
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.37 E-value=1.1e-11 Score=65.36 Aligned_cols=58 Identities=36% Similarity=0.629 Sum_probs=51.4
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|.|++++..+.. ..++..........|.|.++..+|+|.|.|.+.+..+.....+
T Consensus 29 ~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 29 PPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred CCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 368999999999988 8888888778899999999999999999999999988777633
No 34
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.37 E-value=1.2e-11 Score=63.48 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=41.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|+|.++... ..++.. ......|.|.++..+|+|.|.|.+.|..|...+
T Consensus 12 ~p~v~W~k~g~~l~~~-~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 12 RPTYQWFRDGTPLSDG-QGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred CCcEEEEECCEECCCC-CccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 3789999999988651 123332 233468999999999999999999998887643
No 35
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.37 E-value=1.1e-11 Score=63.45 Aligned_cols=60 Identities=17% Similarity=0.372 Sum_probs=45.0
Q ss_pred cceEEEECCEEeCCC--CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 2 GMMSWYQDTFLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 2 p~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
|.++||+++.++... ...++..........|.|.++..+|+|.|.|.+.+..+....+++
T Consensus 14 ~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 14 LRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 578999999988642 122233333345678999999999999999999999887776554
No 36
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.36 E-value=7.4e-12 Score=67.50 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=43.0
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEE------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMET------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|+|+|.++.. ........ ......|.|.++..+|+|.|+|.+.|..+....
T Consensus 32 ~P~v~W~kdg~~l~~--~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 32 PPQIRWLKDNRTLIE--NLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred CCceEEEECCEECcC--CcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 478999999999875 33322111 122468999999999999999999999888766
No 37
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.36 E-value=1.3e-11 Score=63.24 Aligned_cols=56 Identities=27% Similarity=0.526 Sum_probs=43.6
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|+|++..+.. ..............|.|.++..+|.|.|.|.+.|..|....
T Consensus 12 ~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~ 67 (76)
T cd05736 12 LPRLTWLKNGMDITP--KLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED 67 (76)
T ss_pred CCEEEEEECCEECCC--CCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce
Confidence 378999999998765 33222223345568999999999999999999998887776
No 38
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.35 E-value=1.4e-11 Score=63.00 Aligned_cols=51 Identities=29% Similarity=0.293 Sum_probs=42.8
Q ss_pred ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 8 ~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 8 SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 678888888876441 126999999999999999999999999999888865
No 39
>KOG4221|consensus
Probab=99.35 E-value=3.7e-12 Score=90.45 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=82.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec--CCcceeEEEEE----------------
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN--NLGRAKKYMEL---------------- 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~--~~~~~~~~~~v---------------- 62 (115)
.|.|.|.||+..+.. .+ +.+ .......|.|.+++..|+|.|+|++.+ ....+.+.|+|
T Consensus 266 ~p~v~Wlrng~~i~~--ds-~ri-vl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~ 341 (1381)
T KOG4221|consen 266 KPSVKWLRNGEKISV--DS-YRI-VLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAH 341 (1381)
T ss_pred CCceEEeeCCeeeee--cc-eEE-EEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeee
Confidence 489999999999987 33 332 223567899999999999999999998 34444446666
Q ss_pred -----------ecccCCcEEEEEeCCe------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 63 -----------SVSVSDRRLMETRGNK------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 63 -----------~g~~~~~~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
.|.|.+.+.|.+++.. ..|.|..+-..|.|.|.|.+.|..|.....+.|
T Consensus 342 e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l 413 (1381)
T KOG4221|consen 342 ESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQL 413 (1381)
T ss_pred eccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhh
Confidence 5688999999987632 137778888899999999999999997665555
No 40
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=2.2e-11 Score=63.72 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=45.9
Q ss_pred ceEEEECCEEeCCCC-CCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272 3 MMSWYQDTFLIEPSV-SDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS 65 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~-~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~ 65 (115)
.|+|++++.++.... ..++. .........|.|.+++..|+|.|+|.+.+..+...+ .|.|.|.
T Consensus 18 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~ 84 (85)
T cd05854 18 TFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP 84 (85)
T ss_pred EEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence 589999999886421 22332 222234568999999999999999999999988877 5666553
No 41
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.34 E-value=1.8e-11 Score=62.58 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=43.8
Q ss_pred EecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 62 LSVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 62 v~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 7 v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 7 VSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 3788899888887531 125899999999999999999999999998888865
No 42
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.34 E-value=4.1e-11 Score=63.31 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=45.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|.|++++..+.. ..............|.|.++..+|.|.|.|.+.|..|.....+
T Consensus 29 ~p~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 29 LPKVEWIIAGLIVIQ--TRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CCeEEEEECCEEccC--CccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 489999999988765 3333333344567899999999999999999999998877643
No 43
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.33 E-value=4.2e-11 Score=63.02 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=48.6
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS 67 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~ 67 (115)
|.|+|+|++..+... ..++.+... .....|.|.++..+|+|.|+|.+.|..|.... .|.|...|.
T Consensus 16 ~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 16 IIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred CEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 689999999888652 245554321 22367999999999999999999999998887 555555443
No 44
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=1.6e-11 Score=63.07 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=40.7
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC----CCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS----TDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++......++. .......|.|..+.. +|+|.|.|.+.|..|...+
T Consensus 12 ~P~v~W~k~g~~l~~~~~~~~~--~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 12 PPTFSWTRNGTHFDPEKDPRVT--MKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CCeEEEEECCeECCCCCCCCEE--EeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4899999999988642123332 233456788887743 6899999999999987765
No 45
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=1.7e-11 Score=62.81 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=42.0
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|+|.++...+...... ..+..|.|.++..+|.|.|.|.+.|..|...+
T Consensus 15 ~P~i~W~k~g~~i~~~~~~~~~~---~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd05868 15 KPSISWLTNGVPIEIAPTDPSRK---VDGDTIIFSKVQERSSAVYQCNASNEYGYLLA 69 (76)
T ss_pred CCeEEEEECCEEccccCCCceEE---ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence 48999999999886421222111 12357889999999999999999999988887
No 46
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.33 E-value=2.2e-11 Score=62.10 Aligned_cols=55 Identities=25% Similarity=0.484 Sum_probs=41.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++......++.. .....|.|.++..+|+|.|.|.+.|..|...+
T Consensus 12 ~p~v~W~k~~~~~~~~~~~~~~~---~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s 66 (74)
T cd05738 12 DPEITWFKDFLPVDTTSNGRIKQ---LRSGALQIENSEESDQGKYECVATNSAGTRYS 66 (74)
T ss_pred CCEEEEEECCEECccCCCCCEEE---cCCcEEEECCCChhhCEEEEEEEECCCCceEc
Confidence 37899999999886422444433 23456999999999999999999998877543
No 47
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.33 E-value=1.7e-11 Score=63.10 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=44.8
Q ss_pred EEEecccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272 60 MELSVSVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112 (115)
Q Consensus 60 ~~v~g~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~ 112 (115)
..|.|.|.|.+.|++++. ..+|.|.++..+|+|.|+|.|.|..|...+++.+.
T Consensus 5 ~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 5 FTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 456899999999988651 13689999999999999999999999988887664
No 48
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=2.4e-11 Score=62.21 Aligned_cols=54 Identities=26% Similarity=0.387 Sum_probs=41.7
Q ss_pred CcceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|+|.++..... .++.. ....|.|.++..+|+|.|.|.+.|..|....
T Consensus 15 ~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (76)
T cd05867 15 TPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLA 69 (76)
T ss_pred CCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence 378999999998865211 12222 2457999999999999999999999888776
No 49
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.32 E-value=1.8e-11 Score=62.54 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=42.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|++++.++.. .... .........|.|.+++.+|.|.|.|.+.|..|...+
T Consensus 15 ~p~i~W~~~g~~~~~--~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 15 QPTITWRLNGVPIEE--LPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCEEEEEECCEECCC--CCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 378999999998865 3221 112234578999999999999999999999888776
No 50
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.9e-11 Score=62.44 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=40.4
Q ss_pred CcceEEEECCEEe-CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLI-EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++... +.....++.. ......|.|.++..+|+|.|.|.+.|..|....
T Consensus 12 ~P~v~W~k~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 68 (75)
T cd05763 12 TPQIAWQKDGGTDFPAARERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISA 68 (75)
T ss_pred CCEEEEEeCCCccCCcccccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEe
Confidence 3789999998642 2211233332 233457999999999999999999999887766
No 51
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=1.8e-11 Score=62.20 Aligned_cols=55 Identities=33% Similarity=0.483 Sum_probs=44.4
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.++|+|++..+.. ..++... ....|.|.++..+|+|.|.|.+.|..+.....+
T Consensus 15 ~p~v~W~k~~~~~~~--~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 69 (73)
T cd04969 15 KPTISWSKGTELLTN--SSRICIW---PDGSLEILNVTKSDEGKYTCFAENFFGKANSTG 69 (73)
T ss_pred CCEEEEEECCEEccc--CCCEEEC---CCCeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence 378999999998866 5555432 345799999999999999999999998887743
No 52
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.31 E-value=2e-11 Score=62.23 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=43.5
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 12 ~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 12 QGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 778888888877542 236999999999999999999999999998888865
No 53
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.31 E-value=1.7e-11 Score=62.05 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=42.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|.|+|++.++.. ... . .......|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 12 ~P~v~W~k~~~~~~~--~~~-~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05876 12 TPEVHWDRIDGPLSP--NRT-K--KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY 66 (71)
T ss_pred CCeEEEEECCcCCCC--Cce-e--EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence 479999999887654 221 1 223567899999999999999999999998877743
No 54
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.31 E-value=2.9e-11 Score=61.16 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=44.1
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 8 ~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 8 EGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred eEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 788899999887541 247999999999999999999999999998888876
No 55
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.31 E-value=2.9e-11 Score=64.06 Aligned_cols=53 Identities=28% Similarity=0.545 Sum_probs=42.0
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++..+.. . ++.+ ......|.|.++..+|+|.|.|.+.|..|...+
T Consensus 31 ~p~i~W~kng~~l~~--~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 31 ATYIWWVNNGSLLVP--P-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred CCEEEEEECCEECCC--C-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 488999999988764 2 3332 234568999999999999999999999987655
No 56
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.31 E-value=3.2e-11 Score=62.51 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=44.6
Q ss_pred EEEecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272 60 MELSVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112 (115)
Q Consensus 60 ~~v~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~ 112 (115)
+.|.|.|.|.+.|.+++. ...|.|.++.++|+|.|+|.|.|..|..++.+.+.
T Consensus 5 ~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 5 FTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 455899999999988652 12599999999999999999999999988887764
No 57
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.30 E-value=6.9e-11 Score=61.69 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=43.7
Q ss_pred CcceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|+|+|+|.++.. ..+.. .........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 23 ~p~i~W~k~g~~l~~--~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 23 TPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred CCEEEEEECCEECCC--CCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 368999999998875 33321 11123456799999999999999999999998877643
No 58
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.30 E-value=4.3e-11 Score=64.52 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=45.3
Q ss_pred EecccCCcEEEEEeCC---------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 62 LSVSVSDRRLMETRGN---------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 62 v~g~~~~~~~~~~~~~---------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 27 v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 27 VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 3888999999987652 1369999999999999999999999999888888774
No 59
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.30 E-value=4.3e-11 Score=60.94 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=44.5
Q ss_pred EEecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 61 ELSVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 61 ~v~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 7 ~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 7 PISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred eEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 34788888888877542 347999999999999999999999999998888865
No 60
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.30 E-value=3.3e-11 Score=63.92 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=41.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|||++.++.. ..+... .+..|.|.++..+|+|.|+|.+.+..+....
T Consensus 29 ~p~i~Wyk~~~~i~~--~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 29 LPPVQWYKDCKLLEG--DRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred CCcEEEeECCEECCC--CccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 368999999999876 443221 5678999999999999999999987655544
No 61
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.30 E-value=4.9e-11 Score=61.27 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=39.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC----CCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS----TDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~ 58 (115)
.|+|+|+|++.++......++. .......|.|..+.. .|.|.|.|.+.|..|...+
T Consensus 12 ~P~i~W~k~g~~l~~~~~~~~~--~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 12 PPSFSWTRNGTHFDIDKDPKVT--MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CCeEEEEECCeECCCcCCCCEE--EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4899999999987542123332 223455677776654 3789999999999988776
No 62
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.30 E-value=2.1e-11 Score=62.94 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=42.1
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
|.|.|+|+|.++.. ..++.+. ...|.|.++..+|+|.|.|.+.+..+.....+
T Consensus 23 ~~v~W~k~g~~l~~--~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 23 QSINWTKDGVQLGE--NNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred ceEEEeeCCcCCCC--CceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 67999999998876 5555432 34799999999999999999998877665533
No 63
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.29 E-value=3.7e-11 Score=63.51 Aligned_cols=35 Identities=34% Similarity=0.604 Sum_probs=32.3
Q ss_pred EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred eEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 68999999999999999999999999988888873
No 64
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.29 E-value=2.5e-11 Score=61.20 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=43.1
Q ss_pred EEecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 61 ELSVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 61 ~v~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.+.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|..+....+.+
T Consensus 6 ~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 6 KYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 44899999999998752 237999999999999999999999997666544443
No 65
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.29 E-value=7.3e-11 Score=62.57 Aligned_cols=55 Identities=29% Similarity=0.524 Sum_probs=43.4
Q ss_pred cceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
+.++|++ ++.++.. ..++..........|.|.++..+|+|.|+|.+.|..|....
T Consensus 29 ~~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 29 ESIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred CeEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence 3789998 4666655 66776654555678999999999999999999998877644
No 66
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.29 E-value=6.6e-11 Score=62.78 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=46.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v 62 (115)
.|.+.||+++..+.. ..++...... ....|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus 30 ~p~i~W~k~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 30 DPEVIWFKNDQDIEL--SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred CCeEEEEECCEECCC--CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 478999999998876 5555443322 23579999999999999999999999888875543
No 67
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.28 E-value=3.9e-11 Score=60.70 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=44.0
Q ss_pred EEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 61 ELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 61 ~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|..|..+..+.+.+
T Consensus 6 ~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 6 KVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 44789999999988652 247999999999999999999999998777666654
No 68
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=2.2e-11 Score=64.13 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=41.8
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++.. ..++. ..+..|.|.++..+|+|.|.|.+.|..|....
T Consensus 30 ~P~v~W~k~~~~~~~--~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 30 VPVIRWRKILEPMPA--TAEIS----MSGAVLKIFNIQPEDEGTYECEAENIKGKDKH 81 (88)
T ss_pred CCEEEEEECCcCCCC--CCEEe----cCCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence 479999999987765 33322 23457999999999999999999999988776
No 69
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.28 E-value=4.6e-11 Score=60.42 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=43.0
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 9 ~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 9 TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 788888888887652 125888899999999999999999999999888865
No 70
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.28 E-value=8.5e-11 Score=60.36 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=40.4
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC----CCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ----STDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++......++.. ......|.|..+. .+|+|.|.|.+.|..|...+
T Consensus 12 ~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 12 VPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 48999999999775422444443 2345678887653 24689999999999988776
No 71
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.28 E-value=6.6e-11 Score=60.48 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=42.5
Q ss_pred EecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 62 LSVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 62 v~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
+.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 7 v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 7 VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 3677888888776441 125999999999999999999999999998888765
No 72
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=4e-11 Score=60.98 Aligned_cols=51 Identities=27% Similarity=0.366 Sum_probs=42.4
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 11 ~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 11 KAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred ceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 677777777776542 237999999999999999999999999998888865
No 73
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.27 E-value=7.4e-11 Score=60.43 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=43.4
Q ss_pred ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|.|.|.|..|.....+.|.|+
T Consensus 11 ~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 11 NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 677788888876542 1268899999999999999999999999999998874
No 74
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.27 E-value=9.8e-11 Score=61.37 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=43.0
Q ss_pred ecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++ ....|.|.++.++|+|.|+|.|.|..|.....+.|.|
T Consensus 20 ~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 20 SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 77788888886643 1357999999999999999999999999998888865
No 75
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.27 E-value=4.3e-11 Score=60.14 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=41.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.+.|+|++..++. .++... ....|.|.++..+|+|.|.|.+.|..|.....
T Consensus 12 ~p~v~W~k~~~~~~~---~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 64 (69)
T cd05725 12 VPTVLWRKEDGELPK---GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEAS 64 (69)
T ss_pred CCEEEEEECCccCCC---CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEE
Confidence 478999999876654 333332 34579999999999999999999998887763
No 76
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.26 E-value=1e-10 Score=62.73 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=44.1
Q ss_pred ecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272 63 SVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115 (115)
Q Consensus 63 ~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~ 115 (115)
.|.|.+.+.|.+++ ....|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus 25 ~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 25 TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVD 92 (98)
T ss_pred cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEec
Confidence 56667777776543 345799999999999999999999999999999998864
No 77
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.26 E-value=4e-11 Score=60.70 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=38.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 56 (115)
.|.+.|+|++.++... ..++.. .+..|.|.++..+|+|.|+|.+.+.....
T Consensus 12 ~P~v~W~kdg~~l~~~-~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~ 62 (72)
T cd07702 12 APEVIWLKDGLPAAEK-CSRYHV----DGYSLVIKDVTEEDAGIYTILLGIKQYNL 62 (72)
T ss_pred CCeEEEEECCEECCCC-CcEEEe----CCCEEEECcCCHHHCEEEEEEEEccccce
Confidence 4899999999988651 133322 34579999999999999999999864433
No 78
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=5.5e-11 Score=59.74 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=42.8
Q ss_pred ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 8 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 8 GGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred ccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 677788888877542 237999999999999999999999999888888765
No 79
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.25 E-value=5e-11 Score=60.12 Aligned_cols=54 Identities=31% Similarity=0.447 Sum_probs=41.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.+.|+|++.++.. . +.. .......|.|.++..+|+|.|.|.+.|..+.....
T Consensus 12 ~p~v~W~k~~~~~~~--~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 65 (71)
T cd05731 12 TPEISWIKIGGELPA--D-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHT 65 (71)
T ss_pred CCeEEEEECCeECCC--C-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEE
Confidence 478999999887754 2 211 22345689999999999999999999998877663
No 80
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.25 E-value=9.2e-11 Score=62.78 Aligned_cols=59 Identities=25% Similarity=0.469 Sum_probs=43.4
Q ss_pred CcceEEEECCEEeCCCC---CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQDTFLIEPSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|+|++++..+.... ..++.+........|.|.++..+|.|.|.|.+.|..|.....
T Consensus 31 ~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 31 IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 47999999987765310 122333223345789999999999999999999999888773
No 81
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.25 E-value=1.1e-10 Score=62.25 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=43.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+++|..+... ..++. .......|.|.++..+|.|.|.|.+.|..|....
T Consensus 32 ~p~v~W~k~g~~~~~~-~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 32 EPTMTWTKDGEPIESG-EEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred CCEEEEEECCEECcCC-CCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 4789999999988761 13332 2334567999999999999999999999988766
No 82
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=7.5e-11 Score=61.67 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=43.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.+.|+|++.++.. ..++.. ....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 28 ~p~v~W~k~g~~~~~--~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 28 RPAYRWLKNGQPLAS--ENRIEV----EAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred CCEEEEEECCEECCC--CCeEEE----eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 478999999998876 555443 245799999999999999999999998877644
No 83
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=9.5e-11 Score=61.25 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred ceEEEECCEEeCCCC-CCCEEE-EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272 3 MMSWYQDTFLIEPSV-SDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS 65 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~-~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~ 65 (115)
.+.|+++|.++.... ..++.. ........|.|.+++..|+|.|+|.+.+..+.... .|.|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 569999999886421 122221 12234578999999999999999999998877766 5665553
No 84
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=1.1e-10 Score=61.40 Aligned_cols=63 Identities=22% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272 39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~ 107 (115)
..+.-.+.|.+ .|.|.|.+.|.+.+. ...|.|.++..+|.|.|+|.|.|..|....
T Consensus 15 ~G~~v~l~C~~-------------~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 15 KGQNVTLECFA-------------LGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKH 81 (88)
T ss_pred CCCcEEEEEEe-------------cccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence 44556677776 678888888877531 237999999999999999999999999999
Q ss_pred EEEEEEe
Q psy3272 108 YMELSEL 114 (115)
Q Consensus 108 ~~~l~v~ 114 (115)
.+.|.|.
T Consensus 82 ~~~l~V~ 88 (88)
T cd05851 82 QARVYVQ 88 (88)
T ss_pred EEEEEEC
Confidence 8888773
No 85
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.24 E-value=1.7e-10 Score=62.14 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=44.1
Q ss_pred Eec-ccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 62 LSV-SVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 62 v~g-~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
+.| .|+|.+.|.+++. ...|.|..+.++|+|.|+|.|.|..|..+..+.|.|.
T Consensus 27 v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 27 VEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 377 7777788876541 2569999999999999999999999999999888874
No 86
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.23 E-value=7.5e-11 Score=60.21 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=43.8
Q ss_pred ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|.+.|.+++. ...|.|.++..+|+|.|.|.|.|..|.....+.|.|+
T Consensus 8 ~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 8 TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 677888888877542 2369999999999999999999999999988888874
No 87
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.23 E-value=9.6e-11 Score=59.06 Aligned_cols=51 Identities=29% Similarity=0.416 Sum_probs=43.4
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+.+. ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 8 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 8 EGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred eEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 678888888876542 237999999999999999999999999999888876
No 88
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.23 E-value=2.2e-10 Score=59.73 Aligned_cols=64 Identities=23% Similarity=0.425 Sum_probs=48.2
Q ss_pred CCCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeec
Q psy3272 37 VQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADN 100 (115)
Q Consensus 37 ~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n 100 (115)
+...+.-...|.+ .|.|.|.+.|.+++ ....|.|.++..+|.|.|+|.+.|
T Consensus 6 v~~G~~~~L~C~~-------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05857 6 VPAANTVKFRCPA-------------AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72 (85)
T ss_pred cCCCCEEEEEEEc-------------CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence 3445556677776 45566666666543 123688999999999999999999
Q ss_pred CccceeeEEEEEE
Q psy3272 101 NLGRAKKYMELSE 113 (115)
Q Consensus 101 ~~~~~~~~~~l~v 113 (115)
..|.....+.|.|
T Consensus 73 ~~G~~~~~~~l~v 85 (85)
T cd05857 73 EYGSINHTYHLDV 85 (85)
T ss_pred CCCEEEEEEEEEC
Confidence 9999999888865
No 89
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.22 E-value=1.9e-10 Score=60.98 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
..+.-...|.+ .|.|.|.+.|.+++ ....|.|.++..+|+|.|+|.|.|..
T Consensus 15 ~G~~v~L~C~v-------------~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 15 EGKTLNLTCTV-------------FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred CCCcEEEEEEE-------------EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 34455667766 55666666665533 23479999999999999999999999
Q ss_pred cceeeEEEEEE
Q psy3272 103 GRAKKYMELSE 113 (115)
Q Consensus 103 ~~~~~~~~l~v 113 (115)
|..+..+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99988888765
No 90
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.22 E-value=2.4e-10 Score=58.51 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=43.1
Q ss_pred ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 11 ~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 11 EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 677788888876541 247999999999999999999999999988888877
No 91
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.22 E-value=1.8e-10 Score=61.41 Aligned_cols=60 Identities=28% Similarity=0.507 Sum_probs=43.8
Q ss_pred CcceEEEECCEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|.|++++..+... ...++.+........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 30 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 30 IPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred CCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 3789999998666531 01233333233457899999999999999999999998887644
No 92
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.22 E-value=7.7e-11 Score=62.75 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=40.0
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
|.|+|||++.++.......... ...+..|.|.++..+|+|.|.|.+.|..+.....+
T Consensus 34 ~~v~Wyk~~~~~~~~~~~~~r~--~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~ 90 (94)
T cd05756 34 LNLTWYKSDGKTPIPTEERSRM--HQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSI 90 (94)
T ss_pred ceEEEEEcCCCCccccccccee--eecCCeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence 6899999987643210111111 11346799999999999999999999887776643
No 93
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.21 E-value=8.4e-11 Score=62.53 Aligned_cols=54 Identities=22% Similarity=0.437 Sum_probs=39.5
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
|.|+||||+.++.. ..+... .......|.|.++..+|+|.|+|.+.+..+....
T Consensus 30 ~~v~WYKd~~~l~~--~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 30 VELQWYKDSVLLDK--DNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred CcEEEccCCEECcC--CCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 68999999998875 332111 1123457999999999999999999987655443
No 94
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.21 E-value=2.5e-10 Score=58.59 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=41.4
Q ss_pred ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccce--eeEEEEEEe
Q psy3272 63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYMELSEL 114 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~--~~~~~l~v~ 114 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|.|.|.|..|.. ...+.|.|.
T Consensus 8 ~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 8 DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 677888888877542 2369999999999999999999999985 446777665
No 95
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.21 E-value=1.2e-10 Score=62.29 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=41.0
Q ss_pred cceEEEE-CCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCC-cceeEEE
Q psy3272 2 GMMSWYQ-DTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNL-GRAKKYM 60 (115)
Q Consensus 2 p~v~W~~-~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~~~~~ 60 (115)
|.|+|++ ++..+... ..++..... .....|.|.++..+|+|.|+|.+.|.. +....++
T Consensus 31 p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 31 KDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred CEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 5999998 67655431 234433222 234789999999999999999999986 6665543
No 96
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.20 E-value=2.8e-10 Score=61.04 Aligned_cols=36 Identities=36% Similarity=0.590 Sum_probs=32.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 457999999999999999999999999888888764
No 97
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.20 E-value=1.5e-10 Score=59.84 Aligned_cols=57 Identities=26% Similarity=0.517 Sum_probs=43.0
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.+.|+|++..+.. ..... .......|.|.++..+|+|.|.|.+.|..+.....+.
T Consensus 23 ~p~i~W~k~~~~~~~--~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 79 (82)
T cd05856 23 RPDITWLKDNKPLTP--TEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK 79 (82)
T ss_pred CCcEEEEECCcCCcC--Cccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence 378999999987754 22211 1234578999999999999999999999887766443
No 98
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.20 E-value=2.1e-10 Score=58.23 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=42.7
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus 11 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 11 KAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred eEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 667777777776542 247999999999999999999999999999888865
No 99
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.20 E-value=2.3e-10 Score=60.41 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=33.2
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 82 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVT 82 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence 369999999999999999999999999888888885
No 100
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.19 E-value=4.6e-10 Score=60.08 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=32.3
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 47999999999999999999999999999888865
No 101
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.19 E-value=3.8e-10 Score=59.30 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272 39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~ 107 (115)
..+.....|.+ .|.|.|.+.|.+.+. ...|.|.++..+|+|.|.|.|.|..|....
T Consensus 15 ~g~~v~l~C~~-------------~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 15 KGQNVTLECFA-------------LGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCCcEEEEEEe-------------eEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 45566777876 667777777766432 347999999999999999999999999988
Q ss_pred EEEEEEe
Q psy3272 108 YMELSEL 114 (115)
Q Consensus 108 ~~~l~v~ 114 (115)
.+.|.|.
T Consensus 82 ~~~l~V~ 88 (88)
T cd04968 82 QGRIYVQ 88 (88)
T ss_pred EEEEEEC
Confidence 8888773
No 102
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.18 E-value=4.8e-10 Score=60.12 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=42.2
Q ss_pred CcceEEEEC--CEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 1 MGMMSWYQD--TFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 1 ~p~v~W~~~--~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
.|.|.|+|. +..+... ...++.+........|.|.+++.+|+|.|.|.+.|..|....+
T Consensus 30 ~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 93 (98)
T cd05870 30 IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS 93 (98)
T ss_pred CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence 378999994 4444320 1234554333345789999999999999999999998877663
No 103
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.18 E-value=2.3e-10 Score=60.43 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=33.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
..|.|.+++.+|.|.|+|.|.|..|....++.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 469999999999999999999999999988888874
No 104
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.18 E-value=3.6e-10 Score=56.81 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=39.5
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.|+|+|++.++.. ..++. .....|.|.++ .|+|.|+|.+.|..|.......
T Consensus 15 ~P~v~W~k~g~~l~~--~~~~~----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 15 MPYVKWMKGGEELTK--EDEMP----VGRNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCEEEEEECCEECCC--cccee----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 489999999998765 43322 13457888886 4799999999999988776443
No 105
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.18 E-value=1.3e-10 Score=58.45 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=41.5
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|..+..+.|
T Consensus 8 ~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 8 QGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred eEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 678888888877542 2369999999999999999999999998887766
No 106
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.18 E-value=3.4e-10 Score=57.81 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=43.0
Q ss_pred ecccCCcEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 SVSVSDRRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ~g~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|.+.|..++ ....|.|.++..+|.|.|+|.|.|..|.....+.|.|+
T Consensus 11 ~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 11 EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 66777777776543 12479999999999999999999999999998888774
No 107
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.17 E-value=8.9e-10 Score=58.16 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
...+.-...|.+ .|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..
T Consensus 13 ~~G~~v~l~C~~-------------~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 13 YEGGTATIRCTA-------------EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred cCCCcEEEEEEE-------------EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 344555677776 677788888876541 2479999999999999999999999
Q ss_pred cceeeEEEEEE
Q psy3272 103 GRAKKYMELSE 113 (115)
Q Consensus 103 ~~~~~~~~l~v 113 (115)
|.....+.|.|
T Consensus 80 G~~~~~~~L~v 90 (90)
T cd04972 80 GQANVSVQVTV 90 (90)
T ss_pred CceeEEEEEeC
Confidence 99888888764
No 108
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.17 E-value=8.9e-10 Score=57.61 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=34.2
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
...|.|.++..+|.|.|+|.|.|..|..++.+.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 3579999999999999999999999999999999885
No 109
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.17 E-value=3.2e-10 Score=59.88 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=43.2
Q ss_pred CcceEEEECCEEeCC------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272 1 MGMMSWYQDTFLIEP------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV 64 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g 64 (115)
.|.|.|+|++..+.. ....++.+ .....|.|.++..+|+|.|.|.+.|..|.... .|.|.+
T Consensus 15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSV---SQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CCEEEEEeCCCcceeecccCCCCCCeEEE---CCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 378999998864310 01233333 22457999999999999999999999888776 565544
No 110
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.17 E-value=3.8e-10 Score=58.98 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=49.2
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAK 106 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~ 106 (115)
...+.-.+.|.+ .|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.|.|..|...
T Consensus 12 ~~G~~~~l~C~~-------------~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 12 DIGSSLRWECKA-------------SGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred cCCCcEEEEEEe-------------eEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 345556677776 667777777766542 24799999999999999999999999998
Q ss_pred eEEEEEE
Q psy3272 107 KYMELSE 113 (115)
Q Consensus 107 ~~~~l~v 113 (115)
..+.|.|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 8888765
No 111
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.16 E-value=2.9e-10 Score=59.37 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=41.1
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|+|++..+... ..++... ....|.|.++..+|+|.|.|.+.|..|...+
T Consensus 26 ~p~i~W~k~g~~~~~~-~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 26 EPTVSWRKDGQPLNLD-NERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCEEEEEECCEECCCC-CCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 3689999999987652 2233321 2457999999999999999999998877654
No 112
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.16 E-value=8.4e-10 Score=58.97 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=32.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCc-cceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v 113 (115)
..|.|.++..+|+|.|+|.|.|.. |..+.++.|.|
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 579999999999999999999997 88888988876
No 113
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.16 E-value=1e-09 Score=57.72 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=33.5
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~ 82 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ 82 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence 469999999999999999999999999999999886
No 114
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.16 E-value=2.6e-10 Score=59.95 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=40.7
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++..+.. ..... .....|.|.+++.+|+|.|.|.+.|..|....
T Consensus 30 ~p~v~W~k~~~~~~~--~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 30 VPQIKWRKVDGSMPS--SAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCEEEEEECCCcCCC--ccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 378999998876654 32221 23568999999999999999999999888766
No 115
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.15 E-value=7.9e-10 Score=58.87 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=39.7
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|+|.++.. ........ ....|.|.++. .+|+|.|.|.+.|..|...+
T Consensus 33 ~P~i~W~k~g~~l~~--~~~~~~~~--~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 33 VPTYRWLRNGTEIDT--ESDYRYSL--IDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCEEEEEECCeECcc--CCCceEEe--eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 479999999998865 33222211 23468888875 68999999999999987765
No 116
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=6.7e-10 Score=56.47 Aligned_cols=55 Identities=31% Similarity=0.483 Sum_probs=41.2
Q ss_pred CcceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|.|++ ++..+.. ..+... .....|.|..+..+|.|.|.|.+.|..+.....+
T Consensus 15 ~p~v~W~~~~~~~~~~--~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 15 EPAIHWISPDGKLISN--SSRTLV---YDNGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred CCEEEEEeCCCEEecC--CCeEEE---ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 47899997 5666654 444332 2345799999999999999999999988876643
No 117
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.15 E-value=7.4e-10 Score=59.00 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=48.3
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272 39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
..+.-.+.|.+ .|.|.|.+.|.+++ ....|.|.++..+|.|.|+|.|.|..|.
T Consensus 17 ~G~~v~L~C~~-------------~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (95)
T cd05730 17 LGQSVTLACDA-------------DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE 83 (95)
T ss_pred CCCCEEEEEec-------------cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence 34455667776 45666666665543 1236999999999999999999999999
Q ss_pred eeeEEEEEEe
Q psy3272 105 AKKYMELSEL 114 (115)
Q Consensus 105 ~~~~~~l~v~ 114 (115)
.+..+.|.|.
T Consensus 84 ~~~~~~L~V~ 93 (95)
T cd05730 84 QEAEIHLKVF 93 (95)
T ss_pred EEEEEEEEEE
Confidence 9999988875
No 118
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.15 E-value=9.8e-10 Score=56.76 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=41.2
Q ss_pred ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+++ ....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 19 ~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 19 SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 56667777776643 1357999999999999999999999999888877754
No 119
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.14 E-value=8.4e-10 Score=58.77 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=40.1
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+++|..+......++... ...|.|.++. ..|.|.|.|.+.|..|...+
T Consensus 33 ~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 33 PATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 478999999998864223333332 3568887765 58999999999999988766
No 120
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=1.1e-09 Score=55.68 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=40.7
Q ss_pred ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.|.+.|.+.+ ....|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 11 ~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 11 RGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred cCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 56677777776522 1236999999999999999999999999888888765
No 121
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.13 E-value=1e-09 Score=56.07 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=42.9
Q ss_pred ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 63 SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus 8 ~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 8 EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 567777777765431 2369999999999999999999999999999998875
No 122
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.13 E-value=1.4e-09 Score=57.95 Aligned_cols=36 Identities=42% Similarity=0.631 Sum_probs=32.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...|.|.++..+|.|.|.|.|.|..|..+..+.|.|
T Consensus 61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 357999999999999999999999999988887764
No 123
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.11 E-value=1.5e-09 Score=57.51 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=38.3
Q ss_pred CcceEEEE-CCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 1 MGMMSWYQ-DTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 1 ~p~v~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
+|.|+|++ ++..+.. ..++.... ......|+|.++..+|+|.|+|.+.|..+.
T Consensus 28 p~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 28 PKDISWFSPNGEKLVT--QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred CCeEEEECCCCCEecc--CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 35799998 5655544 34443322 234578999999999999999999998544
No 124
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.10 E-value=1.2e-09 Score=56.36 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=32.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 46999999999999999999999999998888875
No 125
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.10 E-value=1.3e-09 Score=57.32 Aligned_cols=75 Identities=29% Similarity=0.404 Sum_probs=49.4
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEec---ccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSV---SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...+...+.|.+..... ........| ....++.....+....|.|.++..+|.|.|+|.+.|..|..+..+.|.|
T Consensus 13 ~~G~~~~l~c~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 13 KEGESVTLECEVSGNPP-PTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp ETTSEEEEEEEEEESSS-SEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred eCCCEEEEEEEEEeCCC-CcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 34556777888753311 111111111 1122333344446678999999999999999999999999999988876
No 126
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.10 E-value=2.3e-09 Score=58.57 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=44.1
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCC-CCCCeEEEEEeecCCcceeEEEEE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMEL 62 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~v 62 (115)
.|.++|+|++..+... ..++..... .....|.|.++. .+|.|.|.|.+.|..|.....+.+
T Consensus 37 ~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 37 RVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 3689999999988641 234432211 124679999987 589999999999999888774443
No 127
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.10 E-value=9.1e-10 Score=58.13 Aligned_cols=29 Identities=34% Similarity=0.705 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 30 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
..|.|.+++.+|+|.|+|.+.|..|...+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 83 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHH 83 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccc
Confidence 67999999999999999999999887766
No 128
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.09 E-value=1.6e-09 Score=57.57 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=40.3
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++.++... ..++... ...|.|.++. .+|+|.|.|.+.|..|...+
T Consensus 33 ~P~i~W~k~~~~i~~~-~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 33 FPIYKWRKNNLDIDLT-NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCEEEEEECCEEccCC-CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 4799999999988541 3344332 3578898875 68999999999999887765
No 129
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.09 E-value=1.4e-09 Score=55.38 Aligned_cols=51 Identities=25% Similarity=0.233 Sum_probs=41.5
Q ss_pred ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272 63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v 113 (115)
.|.|.|.+.|.+++. ...|.|.++..+|.|.|.|.|.|..|. .+..+.|.|
T Consensus 8 ~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 8 SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 678888888877531 236899999999999999999999998 466777766
No 130
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.08 E-value=1.7e-09 Score=57.11 Aligned_cols=30 Identities=33% Similarity=0.702 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
...|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 83 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHH 83 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccC
Confidence 357999999999999999999999887766
No 131
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.08 E-value=1.8e-09 Score=57.13 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=39.4
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|++..+......++.. ....|.|.++. .+|+|.|.|.+.|..|...+
T Consensus 33 ~p~i~W~k~~~~l~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 33 PPTYRWLMNGTEIDDEPDSRYSL----VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEECCEECCCCCCCCEEE----ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 47999999999885421333332 23468888776 48999999999999887654
No 132
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.07 E-value=4.3e-09 Score=56.41 Aligned_cols=60 Identities=32% Similarity=0.433 Sum_probs=44.0
Q ss_pred c-ceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCC-CeEEEEEeecCCcceeEEEE
Q psy3272 2 G-MMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 2 p-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~ 61 (115)
| .|.|++++..+......++.+... .....|.|.++..+| .|.|.|.+.|..|.....+.
T Consensus 31 P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~ 96 (98)
T cd05758 31 PDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIIS 96 (98)
T ss_pred CCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEE
Confidence 5 599999999887522345554432 223589999999845 89999999999988776544
No 133
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.06 E-value=3.6e-09 Score=56.06 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=45.8
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
...+.-...|.+ .|.|.|.+.|.+++ ....|.|.++..+|.|.|.|.|.|..
T Consensus 16 ~~G~~~~L~C~~-------------~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 16 SEGESARFSCDV-------------DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred eCCCcEEEEEEE-------------eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 345556677776 45555555665443 23579999999999999999999999
Q ss_pred cceeeEEEE
Q psy3272 103 GRAKKYMEL 111 (115)
Q Consensus 103 ~~~~~~~~l 111 (115)
|..+..+.|
T Consensus 83 G~~~~~~~l 91 (92)
T cd05747 83 GKQEAQFTL 91 (92)
T ss_pred CCEeEEEEe
Confidence 998887765
No 134
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.06 E-value=3.3e-09 Score=56.25 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=32.0
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 47999999999999999999999999998888765
No 135
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.06 E-value=1.4e-09 Score=55.05 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272 60 MELSVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109 (115)
Q Consensus 60 ~~v~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~ 109 (115)
..+.|.|.|.+.|.+++. ...|.|.++..+|+|.|+|.|.|.........
T Consensus 5 c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 5 PKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred eeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 344789999999987641 22799999999999999999999877654443
No 136
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.05 E-value=3.5e-09 Score=56.04 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=44.8
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC------------CeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG------------NKHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
...+.-.+.|.+.. . .|.+.|.+++ ....|.|.++.++|.|.|.|.|.|..|..
T Consensus 16 ~~g~~v~l~C~a~g-------------~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 16 EDNQPVTLTCEAEG-------------Q-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred ccCCcEEEEEEeCC-------------C-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 45667788888753 3 3344443322 23479999999999999999999999984
Q ss_pred -eeEEEEEE
Q psy3272 106 -KKYMELSE 113 (115)
Q Consensus 106 -~~~~~l~v 113 (115)
+..+.|.|
T Consensus 82 ~S~~~~L~V 90 (91)
T cd05740 82 TSDPYILNV 90 (91)
T ss_pred EeeeEEEEe
Confidence 44777766
No 137
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.03 E-value=5.2e-09 Score=54.61 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.7
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 3479999999999999999999999999889888885
No 138
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.03 E-value=4.3e-09 Score=54.06 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=29.0
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus 41 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 41 YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred EEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 4579999999999999999999999986654433
No 139
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.02 E-value=1.2e-08 Score=53.13 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCcc--ceeeEEEEEEeC
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLG--RAKKYMELSELE 115 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~--~~~~~~~l~v~~ 115 (115)
...|.|.+++.+|+|.|.|.+.|..+ ...+.+.|.|.+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~~ 84 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVHE 84 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEeC
Confidence 46899999999999999999999876 578888998864
No 140
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.01 E-value=3.7e-09 Score=55.17 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=34.0
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
...|.|.+++.+|+|+|+|.|+|..+....++.|.|+
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 3479999999999999999999999999999999885
No 141
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.01 E-value=3.2e-09 Score=54.66 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=29.7
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v 113 (115)
..|.|.++..+|.|.|.|.|.|..|.. ++.+.|.|
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 479999999999999999999999985 55666654
No 142
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.01 E-value=3.9e-09 Score=54.45 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=38.6
Q ss_pred CcceEEEECCE---EeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 1 MGMMSWYQDTF---LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 1 ~p~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.|.|+|+|++. .+...+..............|.|.++..+|+|.|.|.+.|..|.....+
T Consensus 15 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 15 PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 37899999742 1111001100000112346899999999999999999999998877643
No 143
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.01 E-value=8.9e-09 Score=54.58 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCCCCeEEEEEeecCCcceeEEEEE-ec---ccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEE
Q psy3272 37 VQSTDFGNYSCVADNNLGRAKKYMEL-SV---SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMEL 111 (115)
Q Consensus 37 ~~~~d~G~y~C~~~~~~~~~~~~~~v-~g---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l 111 (115)
+...+.-.+.|.+..... .....- .| .+..++....++....|.|..+..+|+|.|+|.|.|..|. ..+++.|
T Consensus 12 v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred EcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 345566678888754221 111111 11 1223344444444568999999999999999999999998 4667777
Q ss_pred EE
Q psy3272 112 SE 113 (115)
Q Consensus 112 ~v 113 (115)
.+
T Consensus 90 ~~ 91 (92)
T cd05866 90 EI 91 (92)
T ss_pred EE
Confidence 65
No 144
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.00 E-value=7.5e-09 Score=56.55 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=32.4
Q ss_pred EEEEEeccC-CCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 79 HTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 79 ~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
..|.|.++. .+|.|.|+|.|.|..|.....+.|.|.
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEec
Confidence 468999987 589999999999999999999998875
No 145
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.99 E-value=1.5e-08 Score=52.60 Aligned_cols=57 Identities=25% Similarity=0.470 Sum_probs=42.3
Q ss_pred cceEEEECCEEeCCCCCCCEEE-EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
|.|.|++++..+.. ...... ........|.|.++..+|.|.|.|.+.+..+.....+
T Consensus 24 ~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~ 81 (85)
T cd05729 24 PTITWLKDGKPFKK--EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY 81 (85)
T ss_pred CeEEEEECCEECcc--cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence 67999999987764 333222 1223456799999999999999999999887766543
No 146
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.98 E-value=7.2e-09 Score=55.18 Aligned_cols=55 Identities=31% Similarity=0.486 Sum_probs=37.7
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecC-----CCCCCeEEEEEeecC-CcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNN-LGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~~-~~~~~~ 58 (115)
.|.|+|+|+|..+......++.. .....+.|..+ ..+|.|.|.|.+.|. .|...+
T Consensus 28 ~p~i~W~k~g~~l~~~~~~~~~~---~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s 88 (95)
T cd05722 28 PPKIEWKKDGVLLNLVSDERRQQ---LPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS 88 (95)
T ss_pred CCEEEEEECCeECccccCcceEE---ccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence 47899999999887521222222 12334556554 578999999999999 877754
No 147
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.98 E-value=1.1e-08 Score=51.40 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=38.0
Q ss_pred ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 63 SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
.|.|.|.+.|.+++. ...|.|.++. |.|.|+|.|.|..|..+.++.|
T Consensus 11 ~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 11 VGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred eecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 789999999987652 2357888864 7999999999999998887765
No 148
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.98 E-value=2.3e-09 Score=55.17 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=33.9
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
.+.|+||+..+.. ....|.|.++ .+|+|.|.|.+.+........|
T Consensus 32 ~~~W~kng~~l~~------------~~~~l~i~~~-~~dsG~Y~C~a~~~~~S~~v~l 76 (78)
T cd05752 32 STQWYHNGKLLET------------TTNSYRIRAA-NNDSGEYRCQTQGSSLSDPVHL 76 (78)
T ss_pred cEEEEECCEEeec------------cCCeEEEeec-ccCCEEeEEECCCCcCCCCEEE
Confidence 6999999987743 2456888899 9999999999987543333343
No 149
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.97 E-value=4.9e-09 Score=53.97 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=37.9
Q ss_pred CcceEEEECCEEe-CCC-----CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLI-EPS-----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~-~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|.|++++... +.. ...++.. .....|.|.++..+|+|.|.|.+.|..|...+
T Consensus 12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 4799999964321 110 1223332 23467999999999999999999998877644
No 150
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.97 E-value=6e-09 Score=52.96 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.1
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~ 110 (115)
...|.|..+..+|.|.|+|.|.|..|.....+.
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 357999999999999999999999999777654
No 151
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.97 E-value=2e-09 Score=56.43 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=36.1
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
|.|.|+++|.++... ..++.+ ....|.|.+++.+|+|.|.|.+...
T Consensus 25 ~~i~W~~ng~~i~~~-~~r~~~----~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 25 ARVVWKFDGKVLTPE-SAKYLL----YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CeEEEEECCEECCCC-CceEEE----ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 689999999998762 134433 2346899999999999999999764
No 152
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.96 E-value=4e-09 Score=64.55 Aligned_cols=48 Identities=29% Similarity=0.501 Sum_probs=39.3
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|+|+|+|+|.++.. .+++... .....|.|.+++.+|+|.|.|.+....
T Consensus 164 p~I~WyKng~~l~~--~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 164 YTLTWYKNGNIVLY--TDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ceEEEEECCEECCC--CCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 78999999999876 5565432 345689999999999999999998654
No 153
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.95 E-value=1.2e-08 Score=53.04 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=32.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...|.|.+++.+|+|.|+|.|.|..+..+.+..|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 457999999999999999999999999888887766
No 154
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.95 E-value=3.6e-09 Score=55.08 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=38.8
Q ss_pred cceEEEECCEEeCCCC--C-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQDTFLIEPSV--S-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
|.++|++++..+.... . .............|.|.+++.+|+|.|.|.+.+..+....
T Consensus 18 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 18 VDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred EEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 5799998876543210 0 0011111123568999999999999999999998877665
No 155
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.95 E-value=1e-08 Score=53.45 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=29.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v 113 (115)
..|.|.++..+|.|.|+|.+.|..|.. +..+.|.|
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 51 GNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred CEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 479999999999999999999999984 44555543
No 156
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.92 E-value=2.6e-08 Score=53.17 Aligned_cols=58 Identities=26% Similarity=0.447 Sum_probs=35.0
Q ss_pred CcceEEEECCEEeCCCC---CCCEEEEEeCCeEEEEEe--cCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MGMMSWYQDTFLIEPSV---SDRRLMETRGNKHTLTIK--NVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~--~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|.|+|+|+|..+.... ..+...........+.+. .+..+|+|.|.|.+.|..|...+
T Consensus 30 ~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 30 TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence 36899999999876410 111111111112222332 33689999999999999887443
No 157
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.90 E-value=5.9e-09 Score=54.87 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=34.6
Q ss_pred cceEEEECCEEeCCCCC--CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVS--DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.+.|+|++..+..... .++.. ....|.|.++..+|+|.|.|.+.+..
T Consensus 25 ~~i~W~k~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 25 ASVVWLFQGGPLQRKEEPEERLLV----TEDGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred ceEEEEECCcccccccCcCceEEE----cCCCEEEccCCHHHCEEEEEEEecCc
Confidence 68999999987665110 12222 23458999999999999999998654
No 158
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.90 E-value=2.2e-08 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=30.6
Q ss_pred EEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 6999999999999999999999999888777654
No 159
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.89 E-value=1.5e-08 Score=51.90 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=34.0
Q ss_pred ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee
Q psy3272 63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~ 107 (115)
.|.|.|.+.|.+++. ...|.|..+.. +|.|.|.|.|.|..|...+
T Consensus 8 ~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 8 KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 677888888876542 24678888754 6899999999999998443
No 160
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.88 E-value=5.6e-08 Score=51.69 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=41.6
Q ss_pred CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------------eEEEEEeccC-CCCCeeeEEEeecCccce
Q psy3272 40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------------KHTLTIKNVQ-STDFGNYSCVADNNLGRA 105 (115)
Q Consensus 40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~ 105 (115)
.+.-.+.|.+ .|.|.|.+.|..++. ...|.|.++. .+|.|.|.|.|.|..|..
T Consensus 19 g~~v~l~C~a-------------~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 19 EEKVTLGCRA-------------RASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCeEEEEeEc-------------eeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 3456778877 566677777766542 1357787765 599999999999999985
Q ss_pred ee-EEEE
Q psy3272 106 KK-YMEL 111 (115)
Q Consensus 106 ~~-~~~l 111 (115)
.+ .+.|
T Consensus 86 ~s~~a~l 92 (94)
T cd05850 86 VSREANL 92 (94)
T ss_pred EEEEEEE
Confidence 43 5444
No 161
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.88 E-value=8e-09 Score=53.88 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=39.4
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
|.|.|++++..++. .. ......|.|.+++.+|+|.|.|.+.+..+......
T Consensus 32 ~~i~W~~~~~~~~~--~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 32 YTLVWTRVGGGLPS--RA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred cEEEEEECCCcCCC--cc------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 68999998876543 11 12346799999999999999999999887776643
No 162
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.88 E-value=4.3e-08 Score=51.93 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCCCCCeEEEEEeecCCcceeEEEEE-eccc---CCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEE
Q psy3272 37 VQSTDFGNYSCVADNNLGRAKKYMEL-SVSV---SDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYME 110 (115)
Q Consensus 37 ~~~~d~G~y~C~~~~~~~~~~~~~~v-~g~~---~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~ 110 (115)
+...+.-.+.|.+..... ...... +|.+ ..++.... ......|.|.++..+|.|.|+|.|.|..|. ...++.
T Consensus 12 v~~G~~~~l~C~~~G~p~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~ 89 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK--DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN 89 (92)
T ss_pred ECCCCeEEEEEEeEeeCC--eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence 345677788998854321 111111 1211 11221111 223468999999999999999999999654 666777
Q ss_pred EEE
Q psy3272 111 LSE 113 (115)
Q Consensus 111 l~v 113 (115)
|.|
T Consensus 90 l~~ 92 (92)
T cd04977 90 LKI 92 (92)
T ss_pred EEC
Confidence 654
No 163
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.87 E-value=1.5e-08 Score=52.86 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred cceEEEECCEEeCCCCCC--CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 2 GMMSWYQDTFLIEPSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
|.+.|+++++........ +...........|.|.+++.+|+|.|.|.+.+...
T Consensus 16 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 16 VDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred cEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 688999877643210001 11111112357899999999999999999987654
No 164
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.84 E-value=6.8e-08 Score=51.39 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=42.0
Q ss_pred CCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------------eEEEEEeccC-CCCCeeeEEEeecCcccee
Q psy3272 41 DFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAK 106 (115)
Q Consensus 41 d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~ 106 (115)
+.-.+.|.+ .|.|.|.+.|.+++. ...|.|.++. .+|.|.|.|.|.|..|...
T Consensus 20 ~~v~l~C~~-------------~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 20 KKVILNCEA-------------RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CEEEEEEEe-------------eecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 345677776 677888888876542 1257788875 6999999999999999864
Q ss_pred -eEEEE
Q psy3272 107 -KYMEL 111 (115)
Q Consensus 107 -~~~~l 111 (115)
+.+.|
T Consensus 87 S~~~~l 92 (94)
T cd05848 87 SREALL 92 (94)
T ss_pred eccEEE
Confidence 34443
No 165
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.84 E-value=2e-08 Score=53.48 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=31.9
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 46899999999999999999999999888888865
No 166
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.84 E-value=1.2e-08 Score=53.10 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=37.0
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
+.+.|||++..+.. . .....|.|.+++.+|+|.|.|.+.+..+...+
T Consensus 30 ~~~~w~k~g~~~~~--~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 30 YKVTYYRDGKAKKY--S--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred eEEEEEECCeEccc--c--------CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 46899999987654 1 12467999999999999999999988765544
No 167
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.83 E-value=2.6e-08 Score=50.82 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=30.0
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~ 110 (115)
....|.|.++..+|+|.|+|.+.|..|..+.++.
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 4467999999999999999999999999877654
No 168
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.81 E-value=3.2e-08 Score=51.26 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=35.6
Q ss_pred Cc-ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 1 MG-MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 1 ~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.| .|+|+|+|.++.. .. ......|.|..+ .|.|.|.|.+.|..|...+
T Consensus 27 ~P~~I~W~k~g~~l~~--~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 27 EPVEILWWQGGSPLGD--PP------APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCeEEEEEECCEECCC--CC------CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 36 6999999998753 11 112457888776 4789999999999887665
No 169
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.81 E-value=5.8e-08 Score=49.77 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=34.9
Q ss_pred ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee-EEE
Q psy3272 63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK-YME 110 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~-~~~ 110 (115)
.|.|.|.+.|.+++. ...|.|..+.. .|.|.|+|.|.|..|...+ .+.
T Consensus 8 ~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 8 KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 678888888876542 23677777764 3789999999999998544 443
No 170
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.80 E-value=7.1e-08 Score=51.24 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=37.3
Q ss_pred ecccCCcEEEEEeCC------------eEEEEEeccC-CCCCeeeEEEeecCccceee-EEEE
Q psy3272 63 SVSVSDRRLMETRGN------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAKK-YMEL 111 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~-~~~l 111 (115)
.|.|.|.+.|.+++. ...|.|.++. .+|.|.|.|.|.|..|...+ .+.|
T Consensus 29 ~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 29 RANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred ccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 677888888877542 1368898885 68999999999999998543 5544
No 171
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.80 E-value=8e-08 Score=51.11 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=41.9
Q ss_pred CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC--------------eEEEEEecc-----CCCCCeeeEEEeec
Q psy3272 40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN--------------KHTLTIKNV-----QSTDFGNYSCVADN 100 (115)
Q Consensus 40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~--------------~~~l~i~~~-----~~~d~G~y~C~~~n 100 (115)
.+...+.|.+ .|.|.|.+.|.+++. ...+.|.++ ...|.|.|.|.|.|
T Consensus 14 g~~v~l~C~v-------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 14 GGPVVLNCSA-------------EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred CCCEEEeeec-------------ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 4456777877 556666666665432 123556555 57899999999999
Q ss_pred C-ccce-eeEEEEEE
Q psy3272 101 N-LGRA-KKYMELSE 113 (115)
Q Consensus 101 ~-~~~~-~~~~~l~v 113 (115)
. .|.. ++.+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 8885 55766654
No 172
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.79 E-value=6.3e-08 Score=51.64 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.1
Q ss_pred cCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272 86 VQSTDFGNYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 86 ~~~~d~G~y~C~~~n~~~~-~~~~~~l~v 113 (115)
+..+|.|.|+|.|.|..|. .++.+.|.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 3689999999999999999 667777766
No 173
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.79 E-value=1.8e-07 Score=48.45 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=31.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...|.|.++..+|.|.|.|.+.|..|..+.++.|.|
T Consensus 50 ~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 50 KWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred EEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 346899999999999999999999999888877754
No 174
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.78 E-value=5.3e-08 Score=47.16 Aligned_cols=46 Identities=37% Similarity=0.610 Sum_probs=35.6
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.+.|++++..+.. ... .......|.|.++...|.|.|.|.+.+..
T Consensus 17 ~~v~W~~~~~~~~~--~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 17 PNITWLKDGKPLPE--SNR----LSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CeEEEEECCEECCC--CCE----EecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 57999999887762 221 22356789999999999999999998754
No 175
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.78 E-value=2.6e-08 Score=51.34 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=37.2
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
+|.|+|||++.+++........-......+.|.|.....+|.+.|.|++.|....
T Consensus 14 ~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 14 AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 3689999999999763211100000113467888888888889999999987644
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.78 E-value=7.3e-08 Score=50.21 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=45.2
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------CeEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~ 108 (115)
...+.-...|.+... .|.+.+.|.+.+ ....|.|.++..+|+|.|.|.+.|..|.....
T Consensus 14 ~~G~~v~L~C~~~~~------------~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 14 RPGADVSFICRAKSK------------SPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred cCCCCEEEEEEcCCC------------CCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 456677888887431 233444444432 13579999999999999999999999998887
Q ss_pred EEE
Q psy3272 109 MEL 111 (115)
Q Consensus 109 ~~l 111 (115)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 665
No 177
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.77 E-value=5.5e-08 Score=51.55 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=32.8
Q ss_pred cCCcEEEEEeC-----------CeEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272 66 VSDRRLMETRG-----------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 66 ~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~ 107 (115)
|.|.+.|.+++ ....|.|.++..+|+|.|+|.+.|..+...-
T Consensus 28 ~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 28 TLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred CCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 55666776654 2357999999999999999999998876433
No 178
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.77 E-value=1.3e-07 Score=48.43 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=33.9
Q ss_pred ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee
Q psy3272 63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~ 107 (115)
.|.|.|.+.|.+++. ...|.|..+.. .|.|.|.|.|.|..|...+
T Consensus 8 ~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 8 KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 678888888877542 23688887642 3689999999999998444
No 179
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.76 E-value=1.1e-07 Score=50.88 Aligned_cols=33 Identities=39% Similarity=0.604 Sum_probs=29.1
Q ss_pred EEEEEeccCCCC-CeeeEEEeecCccceeeEEEE
Q psy3272 79 HTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 79 ~~l~i~~~~~~d-~G~y~C~~~n~~~~~~~~~~l 111 (115)
..|.|.++..+| .|.|.|.|.|..|.....+.|
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 479999999965 899999999999998888766
No 180
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.71 E-value=1.4e-07 Score=50.30 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=34.5
Q ss_pred cceEEEECCEE--------eCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFL--------IEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~--------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.|.|++.+.. ... ..++.+.. ......|.|.+++.+|+|.|.|.+....
T Consensus 27 ~~v~W~~~~~~~l~~~~~~~~~--~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 27 TSLQWSNPAQQTLYFDDKKALR--DNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred eEEEEeCCCCeEEEEcCccccc--CCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 68999864321 111 34555422 2345789999999999999999998643
No 181
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.70 E-value=5.7e-08 Score=50.86 Aligned_cols=38 Identities=37% Similarity=0.464 Sum_probs=34.7
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~ 115 (115)
.+.|.|.++..+|+|.|+|.|.|..+.....+.|.|.|
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~ 86 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE 86 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence 46899999999999999999999999988888888875
No 182
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.70 E-value=4.1e-08 Score=52.29 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=36.2
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.+.|++++.++......+.. .......|.|.+++.+|+|.|.|.+.+..
T Consensus 34 p~~~W~k~~~~~~~~~d~r~~--~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 34 LSYRWLLNEFPNFIPEDGRRF--VSQTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CEEEEEECCcccccccCCCeE--EeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence 689999998754221122222 22346789999999999999999998765
No 183
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.68 E-value=7.8e-07 Score=45.45 Aligned_cols=55 Identities=36% Similarity=0.616 Sum_probs=42.5
Q ss_pred cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
+.+.|+++ +..+.. ..++..........|.|.++...|.|.|.|.+.+..+....
T Consensus 24 ~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 24 PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 57899998 877764 56666554444678999999999999999999976655444
No 184
>smart00409 IG Immunoglobulin.
Probab=98.68 E-value=7.8e-07 Score=45.45 Aligned_cols=55 Identities=36% Similarity=0.616 Sum_probs=42.5
Q ss_pred cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
+.+.|+++ +..+.. ..++..........|.|.++...|.|.|.|.+.+..+....
T Consensus 24 ~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 24 PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 57899998 877764 56666554444678999999999999999999976655444
No 185
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.67 E-value=5.9e-07 Score=48.12 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=44.8
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCC-CeEEEEEeecCCcceeEEEE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYME 61 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~ 61 (115)
.|.|..++..+......++.+... ...+.|.|.++...| .|.|.|.+.|..|.....+.
T Consensus 33 ~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~ 96 (98)
T cd05898 33 RIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQ 96 (98)
T ss_pred EEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEE
Confidence 568998887776533467766543 367899999998777 68999999999988876443
No 186
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.66 E-value=1.1e-07 Score=50.35 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=32.9
Q ss_pred cceEEEECC--EEeCCC--CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec-CCcce
Q psy3272 2 GMMSWYQDT--FLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN-NLGRA 56 (115)
Q Consensus 2 p~v~W~~~~--~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~ 56 (115)
|.|.|||.. ...... ...++.. ....|.|.++..+|+|.|.|.+.+ ..+..
T Consensus 25 p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 25 ASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred ceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 689999843 222110 0233332 235599999999999999999974 44433
No 187
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.66 E-value=3.4e-08 Score=48.63 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=30.1
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCe--EEEEEecCCCCCCeEEEEEe
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVA 49 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~ 49 (115)
+.+.|++++..+.. ............ ..|.|.+++.+|+|.|.|.+
T Consensus 17 ~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 17 TTVTWSKNGQSLPE--GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp SEEEEEETTTTTSE--EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred cEEEEEECCccccC--cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 57999999875443 221111111111 13999999999999999986
No 188
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.66 E-value=2e-07 Score=50.12 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=35.6
Q ss_pred ceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 3 MMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
.|+|||++..+..... ..........+..|.|.++..+|+|.|.|.+.+...-
T Consensus 42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C 95 (104)
T cd05896 42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC 95 (104)
T ss_pred eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcc
Confidence 6899999754433101 0000123335778999999999999999999986633
No 189
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.65 E-value=4.4e-07 Score=46.97 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=41.4
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccCC-cEEEEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSD-RRLMETRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~-~~~~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~ 107 (115)
...+...+.|.+ .|.|.| .+.|.+++. ...|.|..+ .|.|.|.|.|.|..|...+
T Consensus 11 ~~G~~v~l~C~a-------------~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 11 TANTPFNLTCQA-------------VGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred cCCCCEEEEEEe-------------eeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 345566778877 788888 688987653 335777776 4789999999999997543
No 190
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.64 E-value=1.6e-07 Score=49.96 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=30.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccc----eeeEEEEEEe
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGR----AKKYMELSEL 114 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~----~~~~~~l~v~ 114 (115)
..|.|.++..+|+|.|+|.+.+..+. .++.+.|.|.
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v~ 94 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRIV 94 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEEc
Confidence 46999999999999999999998754 5667777664
No 191
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.64 E-value=6.3e-07 Score=47.28 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=33.1
Q ss_pred ecccCCcEEEEEeCC-------------eEEEEEeccCC-CCCeeeEEEeecCccceee
Q psy3272 63 SVSVSDRRLMETRGN-------------KHTLTIKNVQS-TDFGNYSCVADNNLGRAKK 107 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-------------~~~l~i~~~~~-~d~G~y~C~~~n~~~~~~~ 107 (115)
.|.|.|.+.|.+++. ...|.|.++.. +|.|.|+|.|.|..|....
T Consensus 29 ~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 29 RGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred eEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 556677777766442 13678887774 8999999999999997443
No 192
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.64 E-value=5.6e-07 Score=51.16 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=23.2
Q ss_pred EEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 31 TLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 31 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|+|.+++.+|+|.|.|.+.+..+....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~ 29 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ 29 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceee
Confidence 6899999999999999999876554444
No 193
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.64 E-value=5.7e-07 Score=47.95 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=35.0
Q ss_pred CcceEEEECCEEe-CC-----CCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 1 MGMMSWYQDTFLI-EP-----SVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 1 ~p~v~W~~~~~~~-~~-----~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.|.|.|++++..+ .. ....++.+.. ......|.|.++..+|+|.|.|.+..
T Consensus 26 ~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 26 NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3789999977532 10 0123443322 22357999999999999999999986
No 194
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.61 E-value=2.2e-07 Score=49.44 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=24.8
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRA 56 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 56 (115)
....|+|.++..+|+|.|.|.+.+..++.
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 45679999999999999999998876554
No 195
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.59 E-value=8.9e-07 Score=47.20 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.4
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~ 112 (115)
...|.|.++..+|.|.|+|.+.. ....++...|.
T Consensus 61 ~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~ 94 (95)
T cd05882 61 ELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVT 94 (95)
T ss_pred eEEEEECCCCcccCEEEEEEEEe-eccccEEEEEE
Confidence 56899999999999999999998 33444444444
No 196
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.53 E-value=3e-06 Score=45.37 Aligned_cols=75 Identities=25% Similarity=0.354 Sum_probs=48.6
Q ss_pred CCCCCCeEEEEEeecCC-cceeE----EEEEecccCCcEEEEEe----CCeEEEEEeccCCCC-CeeeEEEeecCcccee
Q psy3272 37 VQSTDFGNYSCVADNNL-GRAKK----YMELSVSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAK 106 (115)
Q Consensus 37 ~~~~d~G~y~C~~~~~~-~~~~~----~~~v~g~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~n~~~~~~ 106 (115)
+...|.+...|.+.... ..... ...+......++..... +..+.|.|.++...| .|.|.|.|.|.+|+..
T Consensus 13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 35678888999984322 11101 11122222234444332 356789999998877 6899999999999998
Q ss_pred eEEEE
Q psy3272 107 KYMEL 111 (115)
Q Consensus 107 ~~~~l 111 (115)
..+.|
T Consensus 93 ~~i~L 97 (98)
T cd05898 93 AIIQL 97 (98)
T ss_pred EEEEe
Confidence 88776
No 197
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.49 E-value=1.2e-06 Score=46.39 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=31.3
Q ss_pred EEEEEeccCCCCCeeeEEEee-cCccceeeEEEEEEeC
Q psy3272 79 HTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMELSELE 115 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~-n~~~~~~~~~~l~v~~ 115 (115)
..|.|.++..+|+|.|.|.+. |..+.....+.|.|.+
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 359999999999999999998 5666677788888864
No 198
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.49 E-value=1.6e-06 Score=44.82 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=32.7
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.|+|+++|.++.. .......... ..+.|.|.....+|.|.|.|.+.+..
T Consensus 15 ~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 15 AEIIWFRDGEVLDG--ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred CEEEEEECCEEccC--ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 58999999998764 2111111111 13567777776778889999998754
No 199
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.49 E-value=1.5e-06 Score=46.55 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=26.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
....|+|.+++.+|+|.|.|.+.+..+....
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~ 93 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEA 93 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEE
Confidence 3578999999999999999999976655554
No 200
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.48 E-value=5.5e-06 Score=44.45 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=44.4
Q ss_pred EEEEecccCCc-EEEEEeC--------------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 59 YMELSVSVSDR-RLMETRG--------------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 59 ~~~v~g~~~~~-~~~~~~~--------------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.+.+.+.|.|. ..|.+.+ -.+.|.|..+..+|.|.|+|.|.|...+.+.++.|.|.
T Consensus 24 ~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 24 IVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 44457777776 6666432 12479999999999999999999999999999988874
No 201
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.48 E-value=5.6e-07 Score=48.33 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=33.9
Q ss_pred CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~ 114 (115)
....|.|.+++.+|.|.|+|.+.+ +.|+.+..+.|.|.
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 456899999999999999999999 78888889999873
No 202
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.47 E-value=1.2e-06 Score=45.67 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=34.0
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
+.+.|++++.++.. ..++... ...|.|..++.+|+|.|.|.+.
T Consensus 25 A~v~W~~ng~~l~~--~~r~~~~----~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 25 ASPVWLFNGTPLNA--QFSYRVG----TDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred ccEEEEECCcccCC--CcceEEe----CCCCEEEECCHhhCEEEEEEEe
Confidence 47999999998876 5554332 3447799999999999999986
No 203
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.46 E-value=1.5e-06 Score=44.61 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=36.2
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEecccC-CcEEEEEeCC-----eEEEEEeccCCCCCeeeEEEeecC
Q psy3272 38 QSTDFGNYSCVADNNLGRAKKYMELSVSVS-DRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~-~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
...|.-...|.+. |.|. +.+.|.+++. ...|.|.++ .+|+|.|+|.|.|.
T Consensus 13 ~~G~~V~L~C~~~-------------~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 13 FQGEKVTLTCNGF-------------NSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eCCCCEEEEEeCC-------------CCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC
Confidence 4566667788863 3333 3467766553 347899999 99999999999986
No 204
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.45 E-value=2.1e-06 Score=45.03 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.4
Q ss_pred EEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEEEeC
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELSELE 115 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~v~~ 115 (115)
.|.|.++..+|+|.|.|.+.+..+ ....++.|.|.+
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 589999999999999999987654 466678887753
No 205
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.44 E-value=1.2e-06 Score=45.89 Aligned_cols=56 Identities=34% Similarity=0.440 Sum_probs=36.1
Q ss_pred ceEEEECCEEeCCC--CCC-C-EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 3 MMSWYQDTFLIEPS--VSD-R-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 3 ~v~W~~~~~~~~~~--~~~-~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.+.|...++.+... ... + .........+.|.|.+++.+|+|.|.|.+.+..+....
T Consensus 19 ~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 19 DFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred EEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 57998877643210 010 1 00011224678999999999999999999987765544
No 206
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.44 E-value=2e-06 Score=45.66 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=33.4
Q ss_pred cceEEEECCEEe-CC-----CCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLI-EP-----SVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~-~~-----~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.+.|++.+..+ .. ....++.+.. ......|.|.+++.+|+|.|.|.+....
T Consensus 27 ~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 27 SSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred ceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 678998633211 00 0124444421 2235679999999999999999998655
No 207
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=2.6e-06 Score=46.77 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=28.0
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV 64 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g 64 (115)
.....|+|.+++.+|+|.|.|.+......... .|.|.|
T Consensus 71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 35789999999999999999999865333332 444433
No 208
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.37 E-value=2.2e-06 Score=44.54 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=28.9
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v 113 (115)
...|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 357999999999999999999999976 444555543
No 209
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.37 E-value=1.6e-06 Score=46.42 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.1
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
....|.|.+++.+|+|.|+|.+.|..+..+..+.|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4568999999999999999999998888888888877
No 210
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.33 E-value=7.2e-06 Score=43.69 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
.....|.|.++..+|+|.|+|.+.+..+ .+....|.|
T Consensus 59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 59 WHELSISISDVSLSDEGQYTCSLFTMPV-KTSKAYLTV 95 (95)
T ss_pred CCcEEEEECcCCcccCEEEEEEeEeecC-ccEEEEEEC
Confidence 3557899999999999999999998533 355666654
No 211
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.33 E-value=2.3e-06 Score=46.01 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=32.3
Q ss_pred CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v 113 (115)
....|.|.+++.+|+|.|.|.+.+ +.|+.+..+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 456799999999999999999997 7777788888887
No 212
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.31 E-value=1e-06 Score=47.00 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.7
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
.+.|.|.++..+|+|.|.|.|+|.....
T Consensus 59 ~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 59 NGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4579999999999999999999987653
No 213
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.28 E-value=2.9e-06 Score=45.99 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.2
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
....|.|.++..+|+|.|.|.+.+..+..+..+.|.|.
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 45679999999999999999999999988889888875
No 214
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.28 E-value=1.9e-06 Score=43.85 Aligned_cols=44 Identities=39% Similarity=0.644 Sum_probs=32.7
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 57 (115)
+.+.|++++..+.. .. .. +.+..+..+|.|.|.|.+.+..+...
T Consensus 29 ~~~~w~~~~~~~~~--~~--------~~--~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 29 PQVQWYKNGSPINS--SQ--------NG--LFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp SEEEEEETTEEEEE--ES--------SE--EEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred eeeeeeeeeeeeee--ee--------ee--eeeeeeccccCEEEEEEEEeCCCCeE
Confidence 47899999887764 11 11 66788889999999999988664333
No 215
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.27 E-value=2.8e-06 Score=46.02 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=34.4
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.....|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 356789999999999999999999988878888888875
No 216
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.27 E-value=1.1e-05 Score=42.91 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=24.6
Q ss_pred CeEEEEEecCCCCCCeEEEEEeec-CCcceeE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKK 58 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~ 58 (115)
....|+|.+++.+|+|.|.|.+.. ..+....
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~ 91 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQK 91 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEE
Confidence 467899999999999999999875 3344444
No 217
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.27 E-value=1.3e-05 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=28.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS 63 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~ 63 (115)
....|.|.+++.+|+|.|.|.+.+..+.... .|.|.
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 3568999999999999999999876655554 44443
No 218
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.24 E-value=5e-06 Score=44.30 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=33.0
Q ss_pred CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~ 114 (115)
....|.|.++..+|+|.|.|.+.. +.|..+..+.|.|+
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 456899999999999999999874 67888889888874
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.22 E-value=2.2e-05 Score=41.86 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=34.8
Q ss_pred ceEEEECCEEeC------CCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIE------PSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.+.|++.+..+. ....+|+.... ......|+|.+++.+|+|.|.|.+....
T Consensus 28 ~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 28 VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 467776554321 00256666554 3456789999999999999999997543
No 220
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.22 E-value=4e-06 Score=44.63 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=35.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
.|.|.|++++..... ...|+.+ .....|.|.++..+|.| .|.|.+.+..
T Consensus 33 ~P~i~W~~~~~~~i~-~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 33 PLRIYWMNSDLLHIT-QDERVSM---GQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred CCEEEEECCCCcccc-ccccEEE---CCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 378999987654222 1444433 34588999999999999 8999998765
No 221
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.21 E-value=1.6e-05 Score=38.17 Aligned_cols=26 Identities=54% Similarity=0.846 Sum_probs=23.0
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLG 103 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~ 103 (115)
...|.|.++...|.|.|+|.+.|..|
T Consensus 38 ~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 38 GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 44799999999999999999998764
No 222
>PHA03376 BARF1; Provisional
Probab=98.18 E-value=2.9e-05 Score=46.08 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 57 (115)
.++..|.|.+++.+|.|.|.|.+........
T Consensus 84 ~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~ 114 (221)
T PHA03376 84 ANTFFLVVTAANISHDGNYLCRMKLGETEVT 114 (221)
T ss_pred CCeEEEEEEeeeecCCceEEEEEEcCCCcee
Confidence 4678899999999999999999986554443
No 223
>smart00409 IG Immunoglobulin.
Probab=98.18 E-value=2.7e-05 Score=39.57 Aligned_cols=45 Identities=38% Similarity=0.552 Sum_probs=35.6
Q ss_pred cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
++.+........|.|.++..+|.|.|.|.+.+..+.....+.|.|
T Consensus 41 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 41 RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 344444444578999999999999999999998888777777766
No 224
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.18 E-value=2.7e-05 Score=39.57 Aligned_cols=45 Identities=38% Similarity=0.552 Sum_probs=35.6
Q ss_pred cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
++.+........|.|.++..+|.|.|.|.+.+..+.....+.|.|
T Consensus 41 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 41 RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 344444444578999999999999999999998888777777766
No 225
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.12 E-value=1.1e-05 Score=44.07 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
.....|.|.+++.+|.|.|.|.+.......+..+.|.|.
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 356789999999999999999999987778888888875
No 226
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.11 E-value=1.6e-05 Score=43.64 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=33.3
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
....|.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 56789999999999999999999888888888877774
No 227
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.10 E-value=3.5e-05 Score=41.14 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 56 (115)
.....|+|.+++.+|+|.|.|.+....+..
T Consensus 58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~ 87 (97)
T cd05775 58 QNDYSLQISNLKMEDAGSYRAEINTKNGVT 87 (97)
T ss_pred CCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence 446889999999999999999998665444
No 228
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.10 E-value=1.4e-05 Score=42.61 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=32.9
Q ss_pred CeEEEEEeccCCCCCeeeEEEe-ecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVA-DNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~-~n~~~~~~~~~~l~v~ 114 (115)
....|.|.+++.+|.|.|+|.+ ..+.|+.+..+.|.|+
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 4568999999999999999996 5778888889888874
No 229
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.09 E-value=3.9e-05 Score=38.91 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=42.2
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCCe-----EEEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEE
Q psy3272 39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNK-----HTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 112 (115)
Q Consensus 39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~ 112 (115)
..+.-...|.+ .|.|.+.+.|...+.. ..+.+..+..+|.|.|+|.+.+..+ ..+..+.|.
T Consensus 13 ~g~~~~l~C~~-------------~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 13 EGDSVTLTCSV-------------SGNPPPQVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp TTSEEEEEEEE-------------ESSSSSEEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCcEEEEEEE-------------EcccceeeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 45556677776 3455566666654321 1267788899999999999999654 466677776
Q ss_pred E
Q psy3272 113 E 113 (115)
Q Consensus 113 v 113 (115)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 5
No 230
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.08 E-value=2.5e-05 Score=43.14 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
....+|.|.+++.+|.|.|.|.+.+...
T Consensus 77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 77 RKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 4568899999999999999999997653
No 231
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.07 E-value=0.00012 Score=40.49 Aligned_cols=35 Identities=20% Similarity=0.472 Sum_probs=27.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL 62 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v 62 (115)
...+|.|.+++.+|+|.|.|.+......... .|+|
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 5789999999999999999999866544444 4444
No 232
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.05 E-value=2.1e-05 Score=42.32 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=27.8
Q ss_pred CCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 18 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 18 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
..++.+.... ....|+|.+++.+|+|.|.|.+.+..+
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 3455444333 567899999999999999999986553
No 233
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.05 E-value=5.5e-05 Score=40.39 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecC-CcceeEEEE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYME 61 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~~~~~ 61 (115)
...+|.|.+++.+|+|.|.|.+... .|...+.+.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 4688999999999999999999764 343333433
No 234
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.05 E-value=3.5e-05 Score=40.48 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 29 KHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 29 ~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
...|.|.+++.+|+|.|.|.+....
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCC
Confidence 4789999999999999999998654
No 235
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.01 E-value=3.8e-05 Score=45.43 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=34.5
Q ss_pred cceEEEECCEEeC----------CCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 2 GMMSWYQDTFLIE----------PSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 2 p~v~W~~~~~~~~----------~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
+.|+|+|..+.+. ..-.+|+. +........|+|++++.+|+|.|.|.+..-
T Consensus 46 ~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tf 107 (189)
T PHA02987 46 ILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTL 107 (189)
T ss_pred ceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEec
Confidence 5789998643221 10023443 233446788999999999999999999754
No 236
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.00 E-value=4.8e-05 Score=40.46 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
...+.|.|.++..+|+|.|.|.+.|..+..
T Consensus 62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 345789999999999999999999987653
No 237
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.00 E-value=2.6e-05 Score=41.37 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.4
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
....|.|.+++.+|+|.|+|.+.+... .+..+.|.|
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 456899999999999999999998763 355555554
No 238
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.99 E-value=5.1e-05 Score=39.12 Aligned_cols=42 Identities=12% Similarity=-0.023 Sum_probs=33.4
Q ss_pred ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272 63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
.|.|++.+.|+.++. ...|.|......|.+.|+|.|.|..+.
T Consensus 10 ~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 10 RSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 567788888877542 236888888888889999999999876
No 239
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.99 E-value=2.8e-05 Score=40.77 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEeccCCCCCeeeEEEeecCc
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
.|.|.+++.+|+|.|+|.+.+..
T Consensus 49 ~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 49 GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cEEEeCCCHHHCEEEEEEEEecc
Confidence 59999999999999999999874
No 240
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.99 E-value=6.2e-05 Score=40.86 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
...+|.|.+++.+|+|.|.|.+.+..
T Consensus 68 ~ngSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 68 PNGSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred CCCcEEEecCCcccCEEEEEEEEeCC
Confidence 34689999999999999999998765
No 241
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.98 E-value=8e-05 Score=39.76 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
....+|.|.+++.+|.|.|.|.+....
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP 83 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFP 83 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCC
Confidence 346799999999999999999997543
No 242
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.98 E-value=8.6e-05 Score=38.45 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=30.8
Q ss_pred cceEEEECCEEeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
+.|+|||++.++... ....... ....+.|.|.. +.+|.| .|+|++.+..
T Consensus 15 A~I~W~k~~~~l~~~--~~~~~~~~~~~t~~S~L~~~p-~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 15 ATIRWFKGNKELTGK--STVEETWSRMFTVTSQLMLKV-TKEDDGVPVICLVDHPA 67 (82)
T ss_pred CEEEEEECCEECcCc--ccceeccCCCcEEEEEEEEEC-chhhCCCEEEEEEcCcc
Confidence 589999999998762 1111011 11346677744 455555 8999998754
No 243
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.98 E-value=9e-05 Score=39.81 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=39.2
Q ss_pred eEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272 4 MSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59 (115)
Q Consensus 4 v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 59 (115)
+.|.+++..+.......+..... .-.+.|.+..+..+|.|.|+|.+.|........
T Consensus 36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t 94 (101)
T cd05860 36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT 94 (101)
T ss_pred eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence 89999987665421211211111 124789999999999999999999988776663
No 244
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.98 E-value=3.5e-05 Score=42.56 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
....|.|.+++..|+|.|.|.+.+.....+..+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45789999999999999999999998888888888874
No 245
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.97 E-value=5.6e-05 Score=40.38 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=32.2
Q ss_pred eCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272 75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v 113 (115)
......|.|.+++.+|+|.|.|.+.+..+. ....+.|.|
T Consensus 57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 445678999999999999999999988876 455777766
No 246
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.97 E-value=2.2e-05 Score=42.96 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=33.4
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
....|.|.+++.+|+|.|.|.+.....-.+..+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 46789999999999999999999977778888888774
No 247
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.96 E-value=4.9e-05 Score=41.22 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=27.0
Q ss_pred CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
..++.+... .....|+|.+++.+|+|.|.|.+.+..
T Consensus 56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 344544322 357789999999999999999998643
No 248
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.96 E-value=3.1e-05 Score=41.57 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.7
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecC-Cccee
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNN-LGRAK 57 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~ 57 (115)
...+|.|++++.+|+|.|.|.+.+. .+...
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~ 91 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRE 91 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeE
Confidence 4588999999999999999999983 44333
No 249
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.95 E-value=1.7e-05 Score=42.19 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=32.7
Q ss_pred ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCe-eeEEEeecCccce
Q psy3272 63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFG-NYSCVADNNLGRA 105 (115)
Q Consensus 63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G-~y~C~~~n~~~~~ 105 (115)
.|.|.|.+.|...+ ..+.|.|.++..+|.| .|.|.|.|.....
T Consensus 29 ~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 29 KSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred CCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 45666666665432 2358999999999999 8999999987653
No 250
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.94 E-value=8.1e-05 Score=40.71 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=26.8
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL 62 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v 62 (115)
....|+|.+++.+|+|.|.|.+......... .|+|
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 5678999999999999999999865433333 4444
No 251
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.94 E-value=2.1e-05 Score=41.51 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=32.5
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
+.+.|+|+|..... ... ........+.|.+++.+|+|.|.|.+.+.
T Consensus 30 ~~f~l~k~g~~~~~--~~~---~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 30 VEYRLYREGSTFAV--KKP---PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEEEECCCCccc--ccc---CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 35788888875443 110 11234677999999999999999999764
No 252
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.94 E-value=6.3e-05 Score=40.11 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
....|.|.+++.+|+|.|.|.+....
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p 84 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFP 84 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCC
Confidence 46789999999999999999987543
No 253
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.93 E-value=1.4e-05 Score=40.01 Aligned_cols=25 Identities=48% Similarity=0.837 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.....|.|.++..+|.|.|+|.+.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3578899999999999999999875
No 254
>PHA02633 hypothetical protein; Provisional
Probab=97.92 E-value=5.5e-05 Score=36.65 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=32.4
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
....|-|-++..+|+|.|.|...|..--.+.++.|.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 34568899999999999999999988778888888774
No 255
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.91 E-value=4e-05 Score=42.36 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEE
Q psy3272 69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELS 112 (115)
Q Consensus 69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~ 112 (115)
+..|..+ .....+.|.+++.+|.|.|+|.+.|.-+. ....+.|.
T Consensus 68 Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 68 RIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred ceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 4444432 25678999999999999999999998774 33355554
No 256
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.88 E-value=4.1e-05 Score=41.44 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL 62 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v 62 (115)
.....|+|.+++.+|+|.|.|.+.+..+.... .|.|
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence 35688999999999999999999876554444 4444
No 257
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.88 E-value=4.3e-05 Score=41.21 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=30.1
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
..|.|.++..+|+|.|+|.+.|...-.+..+.|.|
T Consensus 70 ~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 70 DSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 46999999999999999999998877777777664
No 258
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.84 E-value=5.6e-05 Score=39.69 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.8
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELS 112 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~ 112 (115)
..|.|.+++.+|+|.|.|.+....+. ....+.|.
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 67999999999999999999988754 44455554
No 259
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.83 E-value=6.3e-05 Score=40.12 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=31.6
Q ss_pred CeEEEEEeccCCCCCeeeEEEee-cCccceeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~-n~~~~~~~~~~l~v 113 (115)
....|.|.+++.+|+|.|.|... .+.|..+..+.|.|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 45689999999999999999987 56677777888877
No 260
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.82 E-value=6.1e-05 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=28.6
Q ss_pred EEEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~v 113 (115)
.+|.|.+++.+|+|.|+|.+.+... ..+..+.|.|
T Consensus 70 gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 70 GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 3799999999999999999999874 4555666654
No 261
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.82 E-value=0.001 Score=35.49 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.9
Q ss_pred CCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 67 SDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 67 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
++++.... ++....|.|.++..+|.|.|.|.+...
T Consensus 49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 44555554 456778999999999999999999863
No 262
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.80 E-value=0.00028 Score=36.62 Aligned_cols=50 Identities=10% Similarity=0.267 Sum_probs=29.7
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
+.|+|+++|.++.. ........... .+.|.+.....++...|.|.+.+..
T Consensus 15 ~~ItW~k~g~~l~~--~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 15 ANIKWRKGDQELEG--APTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred CEeEEEECCEECCC--cceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 48999999998865 22111111111 2344554444555579999998755
No 263
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.80 E-value=0.00014 Score=39.81 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=26.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL 62 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v 62 (115)
...+|.|.+++.+|+|.|.|.+......... .|+|
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence 5789999999999999999999875533333 4444
No 264
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.80 E-value=7.2e-05 Score=41.20 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=28.9
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v 113 (115)
....|.|.++..+|+|.|.|.+.|..+. ....+.|.|
T Consensus 78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 78 KDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred CeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 4578999999999999999999988664 233555543
No 265
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.80 E-value=0.00013 Score=35.24 Aligned_cols=52 Identities=35% Similarity=0.512 Sum_probs=34.8
Q ss_pred cceEEEECCEEeCCCCCC--CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
+.+.|++++......... ............|.|.++...|.|.|.|.+....
T Consensus 13 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 578999988765431100 0111122346778999999999999999998654
No 266
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.73 E-value=0.00015 Score=37.46 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=29.2
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|.|+|+++++++.. ... ...... ..+.|.+.....++.+.|.|.+.+..
T Consensus 15 ~~v~W~~~~~~l~~--~~~-~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 15 ATIRWFKGDKELKG--VKL-KEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred CeEEEEECCEEccC--cee-eEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence 58999999998865 221 111111 12345554444445569999998754
No 267
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.72 E-value=0.00026 Score=37.71 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.++..........|+|.+++++|+|.|.|.+.+
T Consensus 52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 456655555677899999999999999999864
No 268
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.71 E-value=0.00016 Score=35.27 Aligned_cols=18 Identities=56% Similarity=0.951 Sum_probs=17.3
Q ss_pred EEEeccCCCCCeeeEEEe
Q psy3272 81 LTIKNVQSTDFGNYSCVA 98 (115)
Q Consensus 81 l~i~~~~~~d~G~y~C~~ 98 (115)
|.|.++..+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 269
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.69 E-value=0.00055 Score=36.05 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
+....+.|.+++.+|+|.|+|...+.
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEECC
Confidence 34567999999999999999999987
No 270
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.67 E-value=0.00012 Score=40.30 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=28.3
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELS 112 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~ 112 (115)
....|.|.+++.+|+|.|.|.+.|..+. ....+.|.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 4567999999999999999999987764 22355454
No 271
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.67 E-value=0.00015 Score=39.46 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
....|.|.+++.+|+|.|.|.+...
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCC
Confidence 4578999999999999999998753
No 272
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.67 E-value=0.00025 Score=38.95 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=26.2
Q ss_pred CCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeec
Q psy3272 19 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 19 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.++.+.... ....|+|.+++.+|+|.|.|.+..
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 455554444 567899999999999999999864
No 273
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.65 E-value=0.00077 Score=34.65 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEeccCCCCCeeeEEEeecCccc--eeeEEEE
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGR--AKKYMEL 111 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l 111 (115)
.|.|......|.|.|+|.|.|.... .+.++.|
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 5667776677888999999998765 3334444
No 274
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.64 E-value=0.00021 Score=38.38 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCCCCeEEEEEeec
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
....|+|.+++.+|+|.|.|.+.+
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~ 85 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVIT 85 (100)
T ss_pred CceEEEEecCccccceEEEEEEEe
Confidence 467899999999999999999986
No 275
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.63 E-value=0.00012 Score=38.92 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=29.9
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
.+.|||+|..... ..............+.|..++.+|+|.|.|...
T Consensus 30 ~f~l~k~g~~~~~--~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 30 RFILYKEGRSKPV--LHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEECCCCCCc--eecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4689998864332 100000012235678999999999999999975
No 276
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.62 E-value=0.00026 Score=37.81 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.4
Q ss_pred CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMEL 111 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l 111 (115)
....|.|.+++.+|.|.|+|.... +.|+.++.+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 457899999999999999999975 46776666554
No 277
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.58 E-value=0.00016 Score=38.13 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=31.5
Q ss_pred cceEEEECCEEeCCCCCCC-EEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 2 GMMSWYQDTFLIEPSVSDR-RLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~-~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
+.|+|+++|..+.. ... ....... ..+.|.+......+.+.|.|.+.+...
T Consensus 30 ~~i~W~~~g~~~~~--~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 30 ITVTWLKNGKELTS--GVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cEEEEEECCEECCC--ceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 36899999998765 221 1111111 124456655555689999999987553
No 278
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.58 E-value=0.00053 Score=37.02 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred CcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCc-cceeeEEEEEE
Q psy3272 68 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSE 113 (115)
Q Consensus 68 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v 113 (115)
.+..+..+ .....|.|.+++.+|+|.|.|.+.... ......+.|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 34444444 347899999999999999999999873 33444555554
No 279
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.54 E-value=0.00011 Score=36.61 Aligned_cols=23 Identities=52% Similarity=0.891 Sum_probs=21.1
Q ss_pred eEEEEEeccCCCCCeeeEEEeec
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADN 100 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n 100 (115)
...|.|.++..+|.|.|+|.|.|
T Consensus 53 ~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 53 NSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEccCCHHhCcEEEEEEEC
Confidence 45899999999999999999987
No 280
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.53 E-value=0.0004 Score=37.55 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=24.7
Q ss_pred CEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 20 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 20 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
++..........|.|.+++++|+|.|.|.+.+
T Consensus 61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred CEEEeccCCEEEEEECCCChHHCEEEEEEEeC
Confidence 44443334556799999999999999999864
No 281
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.51 E-value=0.00026 Score=37.98 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.5
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLG 103 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~ 103 (115)
....|.|.+++.+|+|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 567899999999999999999998774
No 282
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.44 E-value=0.00097 Score=34.59 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=29.1
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEe-----CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
+.|+|+|+|..+.. ......... ...+.|.+.....++...|+|++.+..
T Consensus 15 ~~itW~kng~~l~~--~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 15 ADIRWFKNDKEIKD--VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred CEEEEEECCEECcC--ceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 46899999998754 221111111 123456665444445569999998654
No 283
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.40 E-value=0.00033 Score=38.62 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
....|.|.+++.+|+|.|.|.+.+...
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 457899999999999999999987554
No 284
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.36 E-value=0.0009 Score=36.20 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.7
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
....|.|.+++.+|+|.|.|.+.+..
T Consensus 68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 68 KSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCC
Confidence 57789999999999999999999764
No 285
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.31 E-value=0.00075 Score=35.93 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
++....++....|.|.++..+|+|.|.|.+.+.
T Consensus 53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 444444556778999999999999999999864
No 286
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.27 E-value=0.0028 Score=33.66 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.....|+|.+++.+|+|.|.|.+....
T Consensus 61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 61 NGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 345789999999999999999987543
No 287
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.23 E-value=0.00076 Score=37.12 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.8
Q ss_pred eEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 29 KHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 29 ~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
...|+|.+++.+|+|.|.|.+.+...
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 47899999999999999999986543
No 288
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.22 E-value=0.00058 Score=34.62 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.3
Q ss_pred CCeEEEEEecCCCCCCeEEEEEe
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVA 49 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~ 49 (115)
.....|+|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 45678999999999999999974
No 289
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.21 E-value=0.0021 Score=33.62 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=32.2
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.|+|...+...-. .....+.+|.+..+...|+|.++|.+.........
T Consensus 32 ~i~w~~P~n~~~~--------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 32 KVEWRGPGNKSKQ--------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred cEEEeCCCCccce--------eccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence 7888764432111 01135678889999999999999999865444433
No 290
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.18 E-value=0.00077 Score=36.44 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=26.2
Q ss_pred cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
++.....+....|.|.++..+|+|.|.|.+.+.
T Consensus 61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 444444456678999999999999999999764
No 291
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.16 E-value=0.0016 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=29.3
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
+|+|||++..+.................+|++. +..+|.| .|+|++.+..
T Consensus 35 ~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l 85 (100)
T cd05755 35 TVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDL 85 (100)
T ss_pred EEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEecc
Confidence 379999999886521110000011234566664 4466666 9999998654
No 292
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.15 E-value=0.00094 Score=41.63 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=34.7
Q ss_pred cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
|...|..+ |+.+.. .....++ ....|.+.+-..+++|.|+|.+....
T Consensus 13 P~y~W~GP~g~~l~g--n~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSG--NSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCC--CCeEEEc---cCceEEeeccccccCCceEEEEEEEe
Confidence 78999975 455555 4444443 45569999999999999999997543
No 293
>KOG3515|consensus
Probab=97.15 E-value=0.0013 Score=46.62 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------- 62 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------- 62 (115)
+++.||+.++.+.. +.. ......|.......+.-+.|.|++.+..+.... .+.+
T Consensus 38 ~~~eW~h~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~ 110 (741)
T KOG3515|consen 38 IDVEWYHSTSGEHG----RYA---TIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQV 110 (741)
T ss_pred cceEEEecCccccc----ccc---cccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhh
Confidence 57899998875541 100 012344444455455556777777765433332 1222
Q ss_pred -------------ecccCCcEEEEEeC-----------------------CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 63 -------------SVSVSDRRLMETRG-----------------------NKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 63 -------------~g~~~~~~~~~~~~-----------------------~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
.+.|.+.+.|.... ....+.+...+..+.|+|+|.+.|.
T Consensus 111 ~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 111 DKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred cCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 34666666665421 1235777777888999999999995
No 294
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.15 E-value=0.00095 Score=36.32 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=26.7
Q ss_pred CcEEEEEeC-CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 68 DRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 68 ~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
+++...... ....|.|.++..+|+|.|.|.+.+..
T Consensus 60 ~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 60 DRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CceEEECcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence 344433332 56789999999999999999998754
No 295
>PHA03376 BARF1; Provisional
Probab=97.14 E-value=0.0034 Score=37.58 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 73 ~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
..+.+..+|.|.+++..|.|+|+|..+.....
T Consensus 81 ~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~ 112 (221)
T PHA03376 81 HRSANTFFLVVTAANISHDGNYLCRMKLGETE 112 (221)
T ss_pred EecCCeEEEEEEeeeecCCceEEEEEEcCCCc
Confidence 34456778999999999999999999976544
No 296
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.13 E-value=0.0015 Score=32.43 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=25.1
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
+|.|++ |..+.. . ...+|.+-....+-.|.|.|.+.+
T Consensus 18 si~W~k-G~~~~~--~---------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 18 NITWKK-GKEILE--V---------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cEEEec-Cccccc--c---------cccEEeccCcccCCCcceEecCcc
Confidence 589999 554443 1 145565666666667999999866
No 297
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.12 E-value=0.0018 Score=35.52 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.3
Q ss_pred CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.+|+.+.. ......|+|.++..+|+|.|.|.+..
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 35555542 34567899999999999999999874
No 298
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.09 E-value=0.0033 Score=33.81 Aligned_cols=25 Identities=44% Similarity=0.745 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
....|.|.+++.+|+|.|.|.+...
T Consensus 77 ~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 77 NNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TEEEEEESSESGGGEEEEEEEEEES
T ss_pred CeEEEEECCCCcCcCEEEEEEEEEC
Confidence 4678999999999999999999865
No 299
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.09 E-value=0.0049 Score=31.19 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=27.5
Q ss_pred ceEEEECCEEeCCC-CCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 3 MMSWYQDTFLIEPS-VSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 3 ~v~W~~~~~~~~~~-~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
.|+|+|+|+++... ........ .....+.|.+.....++...|+|.+...
T Consensus 17 ~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 17 TVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 68999999874321 00000010 0111344555555556667999999754
No 300
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.05 E-value=0.0013 Score=34.90 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~ 103 (115)
.....|.|.++..+|+|.|.|.+.....
T Consensus 61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 88 (98)
T cd05716 61 NGVFTVTLNQLRKEDAGWYWCGVGDDGD 88 (98)
T ss_pred CCEEEEEEcCCCHHHCEEEEEEcccCCC
Confidence 4567899999999999999999987653
No 301
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.04 E-value=0.0011 Score=33.63 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.3
Q ss_pred CCeEEEEEeccCCCCCeeeEEEe
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVA 98 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~ 98 (115)
.....|.|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 45678999999999999999963
No 302
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.04 E-value=0.0021 Score=33.51 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEEeccCCCCCeeeEEEeecCc-cceeeEEEEEEe
Q psy3272 81 LTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSEL 114 (115)
Q Consensus 81 l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v~ 114 (115)
|.|..++.+|+|.|.|.+.-.. -..-..+.|.|.
T Consensus 49 LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~ 83 (85)
T cd05872 49 LLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV 83 (85)
T ss_pred CEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence 7899999999999999988432 233345555543
No 303
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.01 E-value=0.0015 Score=35.32 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100 (115)
Q Consensus 68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n 100 (115)
.++..........|.|.++..+|+|.|.|.+.+
T Consensus 58 ~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 58 KRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred ceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 345444555677899999999999999999874
No 304
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.93 E-value=0.022 Score=31.18 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.1
Q ss_pred CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
.++....+. ....|.|.++..+|+|.|.|.+...
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence 455555554 5678999999999999999999753
No 305
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.88 E-value=0.0024 Score=35.29 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 26 RGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 26 ~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
......|.|.+++.+|+|.|.|.+..
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEc
Confidence 34467899999999999999999864
No 306
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.84 E-value=0.0044 Score=36.91 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=32.6
Q ss_pred EEeCCeEEEEEeccCCCCCeeeEEEeec-Ccc-ceeeEEEEEEe
Q psy3272 73 ETRGNKHTLTIKNVQSTDFGNYSCVADN-NLG-RAKKYMELSEL 114 (115)
Q Consensus 73 ~~~~~~~~l~i~~~~~~d~G~y~C~~~n-~~~-~~~~~~~l~v~ 114 (115)
...-....|.|.+++.+|+|.|.|...- +.| +.+.++.|.|.
T Consensus 79 S~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 79 SKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred ccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence 3344567899999999999999999874 445 66777777774
No 307
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.75 E-value=0.0043 Score=30.60 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=23.7
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
.|.|++++..++. . +..+.+.+-. ++.|.|.|.+..
T Consensus 20 ~i~W~~n~~~~~g--~----------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 20 DIKWKKNDQVSQG--S----------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred CceEEeCCccCCC--C----------CceEEeeccC-CCCceEEEEeCC
Confidence 4899999866654 1 1223333333 789999999864
No 308
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.70 E-value=0.0033 Score=34.49 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.8
Q ss_pred CcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 68 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 68 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
.++.+.. ......|.|.++..+|+|.|.|.+...
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4555543 345788999999999999999999953
No 309
>PHA02633 hypothetical protein; Provisional
Probab=96.64 E-value=0.0084 Score=29.20 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.+..|-|-++..+|+|.|.|.+++..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t 41 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNET 41 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCC
Confidence 45567778889999999999998654
No 310
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.62 E-value=0.0044 Score=33.46 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=23.9
Q ss_pred EEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272 21 RLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 21 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
+..........|+|.+++.+|+|.|.|.+.
T Consensus 60 f~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 60 FSGSRSSNSFVLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred EEEEecCCEEEEEECCCCHHHCEEEEEEEc
Confidence 444334466789999999999999999975
No 311
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.55 E-value=0.017 Score=30.64 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=25.4
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEE---ecCCCCCCeEEEEEeecC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTI---KNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~ 52 (115)
.|+|.|||.++.......... ..+.+..+ -.+.+.+...|.|.+...
T Consensus 33 ~v~W~~dg~~~~~~~~~~~~p---~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 33 EIRLLKNGVKIPKVEQSDLSF---SKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEECCEECCCcEECcEEE---CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 679999999875311111111 11112111 123456677899999764
No 312
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.53 E-value=0.022 Score=31.29 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=26.5
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
.|+|+|||..+.. ...-...... ..+.|.+.. ...|.| .|+|.+....
T Consensus 39 ~v~W~kng~~~~~--~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 39 TVKWLKNGNELSA--EQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEECCEECcc--cccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 6899999998764 2111111111 123444443 344545 5999998643
No 313
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.48 E-value=0.01 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeec
Q psy3272 19 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN 51 (115)
Q Consensus 19 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~ 51 (115)
+++...... ....|+|.++..+|+|.|.|....
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 445544332 345799999999999999998753
No 314
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.44 E-value=0.0053 Score=33.28 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
+....|.|.++..+|+|.|.|...+.
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTVGS 94 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcCC
Confidence 45678999999999999999998643
No 315
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.34 E-value=0.038 Score=28.99 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=29.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~ 114 (115)
...|.+.+++..|+|.-+|.+....-.....+.+.|+
T Consensus 50 ~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 50 KKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred ccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 4579999999999999999998665555666666664
No 316
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.12 E-value=0.018 Score=27.30 Aligned_cols=26 Identities=54% Similarity=0.823 Sum_probs=22.6
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLG 103 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~ 103 (115)
...|.|.++...|.|.|.|.+.+..+
T Consensus 42 ~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 42 SSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred EEEEEECccCcccCcEEEEEEecCcC
Confidence 45799999999999999999998763
No 317
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.09 E-value=0.015 Score=32.09 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=25.4
Q ss_pred cEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272 69 RRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN 101 (115)
Q Consensus 69 ~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~ 101 (115)
++.+.. ......|.|.++..+|+|.|.|.+...
T Consensus 68 R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 68 RFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred cEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 444432 345678999999999999999998664
No 318
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.07 E-value=0.077 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=28.9
Q ss_pred CcceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 1 MGMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
.|.|+|+.++..+.. .......... ..+.|.+..-..++...+.|.+.+...
T Consensus 29 ~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 29 PPQITWYLDGGPVVA--SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp -EEEEEEETTCEECE--EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred CeEEEEEECCCceee--eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 368999999877621 0000000000 134566654444456689999987653
No 319
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.01 E-value=0.018 Score=30.53 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEEeccCCCCCeeeEEEee
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVAD 99 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~ 99 (115)
...+.|..++.+|+|.|.|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 4578999999999999999975
No 320
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.88 E-value=0.055 Score=28.74 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=24.5
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeC------CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRG------NKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
.|+|.+||.++.. +......... ..+.|.+. +.+...|+|.+...
T Consensus 33 ~v~W~~~g~~~~~--~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 33 NVTWLKNGVPVTD--GVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred EEEEEECCeEccC--ceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 5799999988754 2111000001 12334443 34556899999764
No 321
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=95.81 E-value=0.044 Score=29.10 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=26.1
Q ss_pred ceEEEECCEEeCCC-CCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPS-VSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~-~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|+++|..+... .......... ...+.|.+......+...|.|.+....
T Consensus 32 ~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 32 EVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 67999999876331 0111111100 112344444333334569999998644
No 322
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.80 E-value=0.059 Score=28.38 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=24.4
Q ss_pred ceEEEECCEEeCCC-CCCCEEEEEeC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPS-VSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~-~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|+++|..+... ........... ..+.|.+ ...+.+.|+|.+....
T Consensus 32 ~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 32 EVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHSG 83 (93)
T ss_pred EEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeCC
Confidence 68999999643221 01111111000 1223333 3347789999997644
No 323
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.69 E-value=0.093 Score=27.82 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=24.9
Q ss_pred ceEEEECCEEeCCC-CCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPS-VSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~-~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|++||..+... .......+.. ...+.|.+ ...+...|.|.+....
T Consensus 32 ~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 32 TVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred EEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 67999999987651 0011111100 01233333 3345568999997643
No 324
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.57 E-value=0.038 Score=29.63 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=26.8
Q ss_pred ceEEEECCEEeCCCCC-CCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVS-DRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~-~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|++||+.+..... ........ ...+.|.+......+...|+|.+....
T Consensus 35 ~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 35 TVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred EEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 6899999998753100 01010000 112344444433334569999997643
No 325
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.56 E-value=0.023 Score=30.75 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCCCeEEEEEee
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
....|+|.++.++|+|.|.|...
T Consensus 70 ~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 70 SRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred CEEEEEECCCCHHHCEEEEEeEc
Confidence 34679999999999999999975
No 326
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=95.50 E-value=0.1 Score=29.57 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=15.7
Q ss_pred EEEEEecCCCCCCeEEEEEeecCC
Q psy3272 30 HTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 30 ~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
+.|.+......+.+.|.|.+.+..
T Consensus 108 s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 108 SHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEEecCCccCCCCEEEEEEEcCC
Confidence 556665444445569999997643
No 327
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.43 E-value=0.065 Score=29.10 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=26.4
Q ss_pred EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 25 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 25 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.......|.|+.+++.|+|.|.-++.+..|....
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 3456778999999999999999999987777654
No 328
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.34 E-value=0.046 Score=30.86 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272 29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62 (115)
Q Consensus 29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v 62 (115)
..+|.+.....- .|.|+|.+.....+....+.+
T Consensus 85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~L 117 (130)
T PF08204_consen 85 NASLKMDKSDAV-EGNYTCEVTELSREGETTIEL 117 (130)
T ss_dssp B--EEEEHHHHH--EEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEEcchhcc-ccceEEEEEecCCCceEEEEE
Confidence 455777764433 799999998777666654444
No 329
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.33 E-value=0.19 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=15.1
Q ss_pred EEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 30 HTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 30 ~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
+.|.+.. ..+|.| .|.|++.+..
T Consensus 59 S~l~~~p-~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 59 SEYRLVP-SREANGKELTCVVSHPT 82 (95)
T ss_pred EEEEEec-CHHHCCCEEEEEEeCcc
Confidence 4555544 445555 8999998754
No 330
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.30 E-value=0.17 Score=25.94 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=26.7
Q ss_pred ceEEEECCEEeCCCCCCCEEEEE-eCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMET-RGN-----KHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~-~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|+++|..+.. ........ ..+ .+.|.+. ..+...|.|.+....
T Consensus 26 ~v~W~~~~~~~~~--~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 26 TVTWLKNGKEVTE--GVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEEETTEEETT--TEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred EEEEEeccceeee--eeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 6899999998764 22211111 111 2344444 455568999997644
No 331
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.29 E-value=0.087 Score=28.13 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=10.5
Q ss_pred ceEEEECCEEeCC
Q psy3272 3 MMSWYQDTFLIEP 15 (115)
Q Consensus 3 ~v~W~~~~~~~~~ 15 (115)
.|+|.+||..+..
T Consensus 34 ~v~W~kng~~~~~ 46 (96)
T cd07697 34 QVHWREGNSPSIL 46 (96)
T ss_pred EEEEEECCEECcC
Confidence 6799999987653
No 332
>PHA02982 hypothetical protein; Provisional
Probab=95.24 E-value=0.073 Score=32.51 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=29.8
Q ss_pred CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.+++.+......++|+|.++.++..|.|+|.+....
T Consensus 88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~ 123 (251)
T PHA02982 88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAE 123 (251)
T ss_pred ceeEEEEEeccceeEEeccCCcccCCceEEEEecCC
Confidence 344556677888999999999999999999998644
No 333
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.24 E-value=0.11 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=15.8
Q ss_pred EEEeccCCCCCeeeEEEeecCccc
Q psy3272 81 LTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 81 l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
|.+......+.+.|+|.+.+....
T Consensus 47 l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 47 LRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEcchhhCCCEEEEEEeChhcC
Confidence 444333334456999999998765
No 334
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.04 E-value=0.13 Score=27.93 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=29.4
Q ss_pred CCeEEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEEe
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSEL 114 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v~ 114 (115)
.....|.|..+.+.|+|.|.-.+.+..|.. ...+.+.|.
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 345689999999999999999999999984 335566554
No 335
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.02 E-value=0.22 Score=25.80 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEeccCCCCCe-eeEEEeecCccc-eeeEEEEEE
Q psy3272 80 TLTIKNVQSTDFG-NYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 80 ~l~i~~~~~~d~G-~y~C~~~n~~~~-~~~~~~l~v 113 (115)
.|.|. +..+|.| .|+|.|.|+.-. .+....|.|
T Consensus 45 ~L~~~-p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 45 QLMLK-VTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEE-CchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 45553 4556665 999999997643 333444444
No 336
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.95 E-value=0.041 Score=34.61 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNL 102 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~ 102 (115)
.+.|.+.++...++|.|+|...-..
T Consensus 36 TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 36 TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEeeccccccCCceEEEEEEEe
Confidence 3469999999999999999998765
No 337
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.69 E-value=0.36 Score=26.59 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=36.0
Q ss_pred EEEEEeecCCcceeEEE-EEe---------cccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272 44 NYSCVADNNLGRAKKYM-ELS---------VSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN 100 (115)
Q Consensus 44 ~y~C~~~~~~~~~~~~~-~v~---------g~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n 100 (115)
.+..++.+..+.....+ .+. .....++....+. ....|.|.++..+|+|.|.|.+..
T Consensus 29 ~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 29 YGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 45566776666555422 121 1112355554443 346799999999999999999875
No 338
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=94.61 E-value=0.14 Score=27.23 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=15.0
Q ss_pred EEEEEecCCCCCCe-EEEEEeecCC
Q psy3272 30 HTLTIKNVQSTDFG-NYSCVADNNL 53 (115)
Q Consensus 30 ~~l~i~~~~~~d~G-~y~C~~~~~~ 53 (115)
+.|.+.. ..+|.| .|.|++.+..
T Consensus 59 S~l~~~P-~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 59 SEYSLVP-TPEANGKEVTCKVEHET 82 (95)
T ss_pred EEEEEec-CHHHCCCEEEEEEeCcc
Confidence 4555543 445555 8999998754
No 339
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.60 E-value=0.15 Score=26.33 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEecCCCCCCeEEEEEe-ecCCcceeE
Q psy3272 31 TLTIKNVQSTDFGNYSCVA-DNNLGRAKK 58 (115)
Q Consensus 31 ~l~i~~~~~~d~G~y~C~~-~~~~~~~~~ 58 (115)
.+.......+|+|.+.|.+ .+......+
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s 72 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERES 72 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEE
Confidence 3455677789999999999 554443333
No 340
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.54 E-value=0.21 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEEEeccCCCCCeeeEEEeec
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADN 100 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n 100 (115)
...|.|......-.|.|.|.+.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc
Confidence 35688888888889999999988
No 341
>PHA03042 CD47-like protein; Provisional
Probab=94.31 E-value=0.26 Score=31.35 Aligned_cols=51 Identities=25% Similarity=0.426 Sum_probs=32.8
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v 62 (115)
.|.|..+++.+-. .+. ...++|.++... .-.|.|+|++.+..+.....+++
T Consensus 52 ~V~Wkf~~~~If~--~n~------tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 52 HINWKFNNKVIFK--KNN------TNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred EEEEEeCCeeEEE--ecC------CcceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence 4789998886643 221 134666665443 34799999998777666554544
No 342
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.21 E-value=0.16 Score=27.41 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=25.5
Q ss_pred ceEEEECCEEeCCCCCCCEEEEE-------eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMET-------RGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|+++|+++............ ....+.|.+..-...+...|+|.+....
T Consensus 34 ~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 34 FVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred EEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 57999999887531000000000 0112344443332234558999997643
No 343
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=94.11 E-value=0.4 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=17.1
Q ss_pred EEEEeccCCCCCeeeEEEeecCccce
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
.|.+......+...++|.+.+.....
T Consensus 62 ~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 62 TLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp EEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred EEEEEcChHHCCeEEEEEEECCccCC
Confidence 45555444345559999999987554
No 344
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.95 E-value=0.8 Score=30.93 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=26.9
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
++|+|..++.+..|-|.|.+....-..++.-.|.|
T Consensus 346 STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence 48999999999999999999887655555444443
No 345
>PHA02982 hypothetical protein; Provisional
Probab=93.88 E-value=0.74 Score=28.34 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=31.2
Q ss_pred cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
.+...-++..++|+|.+++.+..|-|+|.+....+..
T Consensus 90 ~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 90 KYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE 126 (251)
T ss_pred eEEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence 4455667888999999999999999999999877553
No 346
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=93.83 E-value=0.46 Score=24.47 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=16.2
Q ss_pred EEEeccCCCCCeeeEEEeecCccc
Q psy3272 81 LTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 81 l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
|.+......+...|+|.+.+....
T Consensus 48 l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 48 VEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEecchhCCCEEEEEEECcccC
Confidence 444344444556999999998754
No 347
>KOG3515|consensus
Probab=93.25 E-value=0.85 Score=33.25 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=38.3
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 60 (115)
|.+.|.+++-.+.. ................+.++.+.|.|.|.|.+.+..+.....+
T Consensus 432 ~~~~w~~~~~~~~~--~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~ 488 (741)
T KOG3515|consen 432 RTFYWTFRLYKLSQ--VDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYL 488 (741)
T ss_pred cchhheecceeccc--ccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEE
Confidence 57789988877765 3332222223333444667889999999999999887776633
No 348
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=93.08 E-value=0.61 Score=25.79 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=26.7
Q ss_pred ceEEEECCEEeCCCCCC-CEEEEE----eCCeEEEEEecCCCCC-CeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSD-RRLMET----RGNKHTLTIKNVQSTD-FGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~-~~~~~~----~~~~~~l~i~~~~~~d-~G~y~C~~~~~~ 53 (115)
.|+|+||+..+...... ...... ....+.|.+......+ ...|.|.+....
T Consensus 36 ~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 36 SLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 68999999887641110 011110 1113445554433333 458999997643
No 349
>KOG1480|consensus
Probab=92.80 E-value=0.045 Score=39.40 Aligned_cols=51 Identities=29% Similarity=0.630 Sum_probs=37.5
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.++|+|++..+.. ...+ .....+.+.|..+...|.|.|+|++.+..+....
T Consensus 161 e~~w~k~e~~~~p--d~n~---~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 161 EVEWLKNEVVIDP--DANV---IRASDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hhhccccCCCCCc--cccc---hhhhcCCccccchhhhhcccceeeeehhhccccc
Confidence 4789999876655 2221 2234667889999999999999999987766655
No 350
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.64 E-value=0.31 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=24.5
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
...|.+.....- .|+|+|.+.......+..+.|..
T Consensus 85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 85 NASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp B--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 345777764444 79999999998888777777765
No 351
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=92.50 E-value=0.68 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=26.6
Q ss_pred ecccCCcEEEEEe--CC---------------eEEEEEeccCCCCCe-eeEEEeecCccce
Q psy3272 63 SVSVSDRRLMETR--GN---------------KHTLTIKNVQSTDFG-NYSCVADNNLGRA 105 (115)
Q Consensus 63 ~g~~~~~~~~~~~--~~---------------~~~l~i~~~~~~d~G-~y~C~~~n~~~~~ 105 (115)
.|+|.+.+.|..+ +. .+.|.+ ....+|.| .|+|.+.+..-..
T Consensus 26 ~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 26 NGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRL-VPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcccCC
Confidence 5677888888764 10 113444 33456666 9999999987553
No 352
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=91.67 E-value=0.41 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=22.3
Q ss_pred EeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272 25 TRGNKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 25 ~~~~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
...+...|.|.+++.+|++.|.|...
T Consensus 69 ~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 69 LGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 34567889999999999999999764
No 353
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=90.83 E-value=1.3 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=16.4
Q ss_pred EEEEeccCCCCCeeeEEEeecCccc
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
.|.+..-...+...|+|.+.+....
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEcccccCCCEEEEEEechhcC
Confidence 4555433344445999999998765
No 354
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.71 E-value=1.4 Score=23.44 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=24.0
Q ss_pred ceEEEECCEEeCCCCCCCE--EEEE-eC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRR--LMET-RG---NKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~--~~~~-~~---~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|+|||.. .. +... .... .. ..+.|.+....-.....|.|.+....
T Consensus 34 ~vtW~k~g~~-~~--~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 34 TFTWNSGSNS-TS--GVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEeECCEE-CC--CcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 6899999987 32 1100 0000 00 12334443332222457999998654
No 355
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.28 E-value=1.7 Score=23.11 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=8.9
Q ss_pred CeEEEEEeecCC
Q psy3272 42 FGNYSCVADNNL 53 (115)
Q Consensus 42 ~G~y~C~~~~~~ 53 (115)
.-.|+|.+....
T Consensus 75 g~~ysC~V~H~~ 86 (96)
T cd07696 75 GDTFQCKVTHPD 86 (96)
T ss_pred CCcEEEEEECCC
Confidence 448999998643
No 356
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.15 E-value=1.6 Score=22.51 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=25.3
Q ss_pred EEEEeccCCCCCeeeEEEe-ecCccceeeEEEEEEe
Q psy3272 80 TLTIKNVQSTDFGNYSCVA-DNNLGRAKKYMELSEL 114 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~-~n~~~~~~~~~~l~v~ 114 (115)
....-.+..+|+|...|.| .+..-.....+.|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 4566677789999999999 6666555556666553
No 357
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=89.78 E-value=1.4 Score=23.47 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=26.6
Q ss_pred ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCe-eeEEEeecCccceeeE
Q psy3272 63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFG-NYSCVADNNLGRAKKY 108 (115)
Q Consensus 63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G-~y~C~~~n~~~~~~~~ 108 (115)
.|.|.+.+.|+.+.. .+.|.+. ...+|.| .|+|.+.+..-.....
T Consensus 26 ~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~-P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 26 NGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLV-PTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred CCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEe-cCHHHCCCEEEEEEeCcccCCCeE
Confidence 466777777765411 1234442 3455666 9999999987554333
No 358
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=86.28 E-value=0.45 Score=25.52 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=24.5
Q ss_pred CcceEEEECCEEeCCC----CCC-CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 1 MGMMSWYQDTFLIEPS----VSD-RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~----~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
++.|.|+.+....... ..+ .++ ..+.+.+......|--.+.|++....
T Consensus 32 aa~IsW~~~~~G~~~~~~~~~~ngT~T-----V~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 32 AADVTWETNVYGTSESHSQEHPNGTTT-----VTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred CCEeEEeCCCCCccceeeecCCCCCEE-----EEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 3689999874322110 011 111 13445554443334448999998653
No 359
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=83.14 E-value=4 Score=22.03 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=26.5
Q ss_pred ceEEEECCEEeCCCCCCCEEE-E--E-eCCeEEEEEecCCCCCCe-EEEEEeecC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLM-E--T-RGNKHTLTIKNVQSTDFG-NYSCVADNN 52 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~-~--~-~~~~~~l~i~~~~~~d~G-~y~C~~~~~ 52 (115)
.|.|+++...+.. ...... . . ......+++.. +.+|.| .|+|++.-.
T Consensus 34 ~v~LlkG~~~l~~--~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 34 EIELLKGETLLPS--KSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred EEEEecCcceecc--cccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 5899987665554 211000 0 0 11234555555 477777 999999743
No 360
>PHA03042 CD47-like protein; Provisional
Probab=81.24 E-value=12 Score=24.18 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=18.0
Q ss_pred CCCCCeeeEEEeecCccceeeEEEEE
Q psy3272 87 QSTDFGNYSCVADNNLGRAKKYMELS 112 (115)
Q Consensus 87 ~~~d~G~y~C~~~n~~~~~~~~~~l~ 112 (115)
...-.|+|+|.+.+.....+..+.|.
T Consensus 78 ~~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 78 SKNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred cccCCCceeEEEeecccCccEEEEEE
Confidence 44457999999998776555555443
No 361
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=80.96 E-value=2 Score=23.10 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=22.8
Q ss_pred ceEEEECCEEeCCCCCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
.|+|.++|.. ...... .... ...-.+.|.+..-.-.....|+|.+....
T Consensus 38 ~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 38 VFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred EEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 6899999864 221000 0000 00113445443222222346999997643
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=79.73 E-value=7.8 Score=26.52 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=26.8
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v 113 (115)
...+.+.+++..|.|.|+|........+-+ .+.+.|
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrV 116 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRK 116 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEE
Confidence 456888899999999999998866555433 555555
No 363
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=79.01 E-value=9 Score=21.33 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCeEEEEEeccCCCCCeeeEEEee
Q psy3272 76 GNKHTLTIKNVQSTDFGNYSCVAD 99 (115)
Q Consensus 76 ~~~~~l~i~~~~~~d~G~y~C~~~ 99 (115)
.+...|.|.+++.+|++.|.|...
T Consensus 71 ~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 71 NEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCEEEEEEcCCCHHHCeEEEEEee
Confidence 356689999999999999999764
No 364
>KOG4597|consensus
Probab=77.63 E-value=4 Score=28.43 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
....|.|-+....|+|.|+|.+.+..+....
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeec
Confidence 4577899999999999999999998877776
No 365
>KOG4597|consensus
Probab=76.70 E-value=3.6 Score=28.60 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=40.5
Q ss_pred EEEEecccCCcEEEEEeC--------------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 59 YMELSVSVSDRRLMETRG--------------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 59 ~~~v~g~~~~~~~~~~~~--------------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
+-.|.|.+.+.+.|.+-- ..-.|.|=+-.+.|+|-|+|.+.+..|...+.+.+.+
T Consensus 217 tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 217 TCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred cccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 344467777777665421 1125888888999999999999999999888776654
No 366
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=76.10 E-value=12 Score=22.20 Aligned_cols=26 Identities=27% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
..+..|.|.+++++|+|.|.-++.-.
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEEC
Confidence 34567899999999999999988643
No 367
>KOG1480|consensus
Probab=74.94 E-value=2.7 Score=30.98 Aligned_cols=27 Identities=37% Similarity=0.676 Sum_probs=23.8
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
..+.+..+...|.|+|+|.+.|-++..
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred CCccccchhhhhcccceeeeehhhccc
Confidence 368889999999999999999998863
No 368
>PHA03282 envelope glycoprotein E; Provisional
Probab=67.98 E-value=15 Score=25.74 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCeEEEEEecCCCCCCeEEEEEee-cCCcceeEEE
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYM 60 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~ 60 (115)
.++..|.+.++...++|.|.|++. |.+..+-.++
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~Yt 364 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYVNGHVHAWGHV 364 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEECCeeeeeEEE
Confidence 456689999999999999999986 4444443333
No 369
>PHA03189 UL14 tegument protein; Provisional
Probab=67.67 E-value=33 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=15.6
Q ss_pred ccCCCCCeeeEEEeecCccc
Q psy3272 85 NVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 85 ~~~~~d~G~y~C~~~n~~~~ 104 (115)
+++.+-+|.|.|...|....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEecccceEEEEeccccce
Confidence 34556789999999998654
No 370
>PHA03283 envelope glycoprotein E; Provisional
Probab=65.19 E-value=48 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
....|.|.+++.+++|.|.-=..+..+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~ 158 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM 158 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc
Confidence 457899999999999999877766544
No 371
>PHA03282 envelope glycoprotein E; Provisional
Probab=64.09 E-value=23 Score=24.94 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=25.0
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEE
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSE 113 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v 113 (115)
..+|.|.++..+|+|.|+-.+...... +...+.|.|
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 346999999999999999887543333 333445544
No 372
>PHA03283 envelope glycoprotein E; Provisional
Probab=63.71 E-value=49 Score=23.66 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=29.2
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v 113 (115)
....|.|.+.+..++|.|+-...+..+.....+.|.|
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtV 168 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTV 168 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEe
Confidence 3467999999999999999999987764444555555
No 373
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.06 E-value=55 Score=23.01 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 28 NKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
.+..|.|.+++...+|.|.-=..+..+.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~ 152 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRT 152 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCc
Confidence 3477899999999999998776655433
No 374
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=61.01 E-value=30 Score=20.57 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=22.4
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
..-|.|.+...+|+|.|.-.++-.....
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCC
Confidence 3459999999999999998888665443
No 375
>KOG0613|consensus
Probab=59.60 E-value=6.6 Score=30.57 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=44.8
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCCeEEE
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTL 81 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~l 81 (115)
|.+.|+.+|..+.. +....+........+.|...-..+.|.|.-.+-+..+.... .-...++
T Consensus 219 ~~~~~~~~g~~i~~--~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----------------~~~~~t~ 280 (1205)
T KOG0613|consen 219 PLERWEILGELIAP--GSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----------------HKGGNTK 280 (1205)
T ss_pred cchhhhhcccccCC--CCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc----------------cCCCccc
Confidence 56788888887766 44433332223333444444444445443333222211110 1122345
Q ss_pred EEeccCCCCCeeeEEEeecCccceeeE
Q psy3272 82 TIKNVQSTDFGNYSCVADNNLGRAKKY 108 (115)
Q Consensus 82 ~i~~~~~~d~G~y~C~~~n~~~~~~~~ 108 (115)
.+.+...++.+.|+|..-+..+.....
T Consensus 281 ~i~~~~~~~~~s~t~~~~~~~~q~~~~ 307 (1205)
T KOG0613|consen 281 TIQNDGPEPELSWTVADKRQGCQDRFK 307 (1205)
T ss_pred cccccCCccccceeeecccCCccccee
Confidence 666666666777777777776664443
No 376
>PHA03290 envelope glycoprotein I; Provisional
Probab=53.48 E-value=27 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
..+..|.|.++.++|+|.|.-++.-..
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCC
Confidence 456778999999999999999987543
No 377
>PHA03289 envelope glycoprotein I; Provisional
Probab=51.97 E-value=57 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.071 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 54 (115)
..+..|.|.++.++|+|.|.-++.-...
T Consensus 119 e~gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 119 EKGLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred CCceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 3466889999999999999999875543
No 378
>COG5475 Uncharacterized small protein [Function unknown]
Probab=51.82 E-value=28 Score=16.70 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
+.+-.+++...+. .|.|.|...+..+.
T Consensus 15 sGGP~Mtvs~~ss--~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 15 SGGPRMTVSGYSS--DGMYECRWFDGYGV 41 (60)
T ss_pred cCCceEEEecccc--CCeEEEEEecCCCc
Confidence 3344566655543 39999998776543
No 379
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=48.38 E-value=44 Score=18.07 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=29.3
Q ss_pred ecccCCcEEEEEeC--C---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 63 SVSVSDRRLMETRG--N---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 63 ~g~~~~~~~~~~~~--~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
+|.|+.++.|..+= . .+.+.+-...+.|.-..+|.+........-.+.|
T Consensus 31 ~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 31 NGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred CCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 67888888886421 1 1234444555556668899988765444444444
No 380
>PHA03270 envelope glycoprotein C; Provisional
Probab=47.41 E-value=98 Score=21.76 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=10.7
Q ss_pred ceEEEECCEEeCC
Q psy3272 3 MMSWYQDTFLIEP 15 (115)
Q Consensus 3 ~v~W~~~~~~~~~ 15 (115)
.+.||+|+.++..
T Consensus 253 ~lrWf~ng~~V~~ 265 (466)
T PHA03270 253 AFRWFEGGDEVFA 265 (466)
T ss_pred EEEEEeCCccccC
Confidence 5899999998753
No 381
>PHA03292 envelope glycoprotein I; Provisional
Probab=46.56 E-value=39 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNL 53 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~ 53 (115)
..+..|.|.+..++|+|.|.-++.-..
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCC
Confidence 456788999999999999999987554
No 382
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=42.58 E-value=78 Score=19.25 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.8
Q ss_pred eCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 26 RGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 26 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
......++++.+..+=.|.|+|.+......
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD~tg~g 118 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDIDETGTG 118 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEECCCCCc
Confidence 345677888888877799999999765433
No 383
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=42.52 E-value=45 Score=16.64 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=9.4
Q ss_pred ceEEEECCEEeCC
Q psy3272 3 MMSWYQDTFLIEP 15 (115)
Q Consensus 3 ~v~W~~~~~~~~~ 15 (115)
.+.||-||..+-.
T Consensus 12 PiswYcN~TRLlR 24 (71)
T PF11049_consen 12 PISWYCNGTRLLR 24 (71)
T ss_pred cccEEECCceeee
Confidence 5789998876543
No 384
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.90 E-value=56 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
.+...|.+.++...++|.|.|++.-.
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEET
T ss_pred CCCcceEecCCCcccCceEEEEEEEC
Confidence 45677999999999999999998743
No 385
>PHA03289 envelope glycoprotein I; Provisional
Probab=38.79 E-value=99 Score=20.78 Aligned_cols=26 Identities=23% Similarity=0.095 Sum_probs=21.6
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
.-|.|.+...+|+|.|.-.++-....
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCc
Confidence 36899999999999999888866544
No 386
>PHA03281 envelope glycoprotein E; Provisional
Probab=38.41 E-value=88 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCCCCeEEEEEee-cCCcceeEEEEE
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMEL 62 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~v 62 (115)
.+...|.+.++...++|.|.|++. +....+.....|
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yNGHVeAWtYtlv 508 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFNGHVEAVAYTVV 508 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEECCeeeeeEEEEE
No 387
>PHA03291 envelope glycoprotein I; Provisional
Probab=36.06 E-value=1.3e+02 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGR 55 (115)
Q Consensus 27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 55 (115)
.....|.|.+...+|+|.|.-++.-....
T Consensus 126 e~~vLL~i~~P~~~DsGiYvLRV~vdgat 154 (401)
T PHA03291 126 ARQPLLRARGAARAVVGLYVLRVWVEGAT 154 (401)
T ss_pred ccceEEEecCCCcccceeEEEEEEeCCCc
Confidence 34667899999999999999998755433
No 388
>PHA03290 envelope glycoprotein I; Provisional
Probab=35.72 E-value=1.2e+02 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.3
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGR 104 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~ 104 (115)
...-|.|.+...+|+|.|.-.++-....
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~ 154 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSR 154 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCc
Confidence 3446999999999999999888865443
No 389
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=35.36 E-value=72 Score=16.76 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=26.5
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 50 (115)
..|.|..++..++. .++.. .....+.+++.+...-.+-.|-|...
T Consensus 38 ~~I~Wkln~~~iP~---~qy~~-in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 38 SQIVWKLNGEKIPG---SQYRV-INDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp TCEEEECSSCESTC---GCEEE-ESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred ceEEEEECCEECCh---hHcce-eCCeEEEEEEccCCCCCceEEEEEEc
Confidence 46889888886665 33332 33445777887776554556666643
No 390
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=34.57 E-value=91 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=27.5
Q ss_pred ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 58 (115)
.+.|+-||.++.. ... .... .-.+.+.|.|.-.+....|...+
T Consensus 684 ~~~W~lng~~l~~--~~~--------~~~~---~w~~~~~G~~~ltVid~~G~~~s 726 (733)
T COG4953 684 PIYWFLNGEPLGE--ASR--------NRPV---TWKPEDAGYYKLTVIDASGRSAS 726 (733)
T ss_pred eeEEEeCCcCccc--ccc--------CCcc---eeccCCCCeEEEEEEccCCceee
Confidence 4789999988876 211 1111 12466789999988876665544
No 391
>PHA03292 envelope glycoprotein I; Provisional
Probab=34.33 E-value=1.2e+02 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=22.7
Q ss_pred eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272 78 KHTLTIKNVQSTDFGNYSCVADNNLGRA 105 (115)
Q Consensus 78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~ 105 (115)
..-|.|.+...+|+|.|.-.++-.....
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~ 154 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPT 154 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCcc
Confidence 4569999999999999999888665443
No 392
>PF15096 G6B: G6B family
Probab=33.83 E-value=42 Score=20.51 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.6
Q ss_pred CCCCCeeeEEEeecC
Q psy3272 87 QSTDFGNYSCVADNN 101 (115)
Q Consensus 87 ~~~d~G~y~C~~~n~ 101 (115)
+..|+|+|.|.....
T Consensus 82 s~GDSGTFfCkGr~e 96 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQE 96 (224)
T ss_pred hcCCccceEecCccc
Confidence 568999999995443
No 393
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=32.88 E-value=53 Score=15.53 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.5
Q ss_pred CCeeeEEEeecCccc
Q psy3272 90 DFGNYSCVADNNLGR 104 (115)
Q Consensus 90 d~G~y~C~~~n~~~~ 104 (115)
.+..|-|.++|..|.
T Consensus 9 ssnsflctvqnkng~ 23 (65)
T PF13220_consen 9 SSNSFLCTVQNKNGD 23 (65)
T ss_pred CCCceEEEEecccHh
Confidence 345889999998764
No 394
>PHA02935 Hypothetical protein; Provisional
Probab=32.39 E-value=58 Score=20.24 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=24.6
Q ss_pred EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272 79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE 113 (115)
Q Consensus 79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v 113 (115)
.+|.|+.++-+|+|.|.-..+-..|- ...++.+.|
T Consensus 102 tclnisslryedsgsykgvshlkdgvivtttmnisv 137 (349)
T PHA02935 102 TCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISV 137 (349)
T ss_pred EEeeccceeeccCCcccCchhhcCceEEEEEEEEEE
Confidence 47888888889999998777766664 333444444
No 395
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=32.18 E-value=62 Score=16.17 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.3
Q ss_pred EEEEEeccCCCCCe--eeEEEee
Q psy3272 79 HTLTIKNVQSTDFG--NYSCVAD 99 (115)
Q Consensus 79 ~~l~i~~~~~~d~G--~y~C~~~ 99 (115)
+.|.+.+.+..-+| +|.|.-.
T Consensus 23 srl~L~DCR~~ttg~M~y~Cde~ 45 (70)
T PF06651_consen 23 SRLFLTDCRKGTTGVMSYACDEV 45 (70)
T ss_pred eeEeccccccCccceeeEEecce
Confidence 46888899888877 8999643
No 396
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=31.94 E-value=79 Score=16.23 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=24.5
Q ss_pred cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56 (115)
Q Consensus 2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 56 (115)
+.+.||-||..+.. .. ....+.+ .+...|.|.-.+....|..
T Consensus 43 ~~~~W~vdg~~~g~--~~--------~~~~~~~---~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 43 GPVYWFVDGEPLGT--TQ--------PGHQLFW---QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred CcEEEEECCEEccc--CC--------CCCeEEe---CCCCCeeEEEEEEcCCCCE
Confidence 46899999998832 11 1222222 3345688887776555443
No 397
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=31.63 E-value=34 Score=11.87 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.3
Q ss_pred ceEEEECCEEe
Q psy3272 3 MMSWYQDTFLI 13 (115)
Q Consensus 3 ~v~W~~~~~~~ 13 (115)
...|.+..+++
T Consensus 5 ~~~wlFEtqpl 15 (16)
T PF08043_consen 5 TTRWLFETQPL 15 (16)
T ss_pred eeEEEeecccC
Confidence 45788776654
No 398
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=31.48 E-value=99 Score=17.18 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=22.4
Q ss_pred EEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111 (115)
Q Consensus 80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l 111 (115)
.|.+.+..+-.-..++|......|.+.+.+.+
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGvskk~iw~ 125 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGVSKKNIWL 125 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEEEEE----
T ss_pred eeeecchhhccceeEEEEEEcCCccccccccC
Confidence 67777888878889999999999988877655
No 399
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.88 E-value=1.6e+02 Score=20.89 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=28.5
Q ss_pred CeEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEE
Q psy3272 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSE 113 (115)
Q Consensus 77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v 113 (115)
....|.|.+.+..++|.|+-...|..+.... .+.+.|
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 4467999999999999999999988766444 444444
No 400
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=28.08 E-value=54 Score=13.06 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=6.9
Q ss_pred CeeeEEEeecCcc
Q psy3272 91 FGNYSCVADNNLG 103 (115)
Q Consensus 91 ~G~y~C~~~n~~~ 103 (115)
.|...|...|..|
T Consensus 17 ~g~v~~wG~n~~G 29 (30)
T PF13540_consen 17 DGEVYCWGDNNYG 29 (30)
T ss_dssp TTEEEEEE--TTS
T ss_pred CCCEEEEcCCcCC
Confidence 5666777766654
No 401
>PF10420 IL12p40_C: Cytokine interleukin-12p40 C-terminus; InterPro: IPR019482 This entry represents the central domain (domain 2) of the beta subunit (also known as subunit p40) interleukin-12 (IL-12). This domain is largely beta-stranded with a fibronectin III-like structure. IL-12 is produced on stimulation by macrophage-engulfed micro-organisms and other stimuli, when it dimerises with IL-12 subunit alpha (subunit p35) to form a heterodimer which then binds to receptors on natural killer cells to activate them to destroy the micro-organisms []. This domain contains two disulphide bridges, one of which serves to bind the beta subunit to the alpha subunit, and the other to hold the beta strands within the domain together. The cupped shape of the alpha subunit binding interface matches the elbow-like bend between domains 2 and 3 in the beta subunit []. Domain 3 also has a fibronectin iii-like structure. ; PDB: 1F42_A 3QWR_A 3D87_B 1F45_A 3HMX_A 3DUH_A.
Probab=22.64 E-value=1.3e+02 Score=15.66 Aligned_cols=13 Identities=23% Similarity=0.435 Sum_probs=7.5
Q ss_pred CCCeeeEEEeecC
Q psy3272 89 TDFGNYSCVADNN 101 (115)
Q Consensus 89 ~d~G~y~C~~~n~ 101 (115)
..+|.|+|...-.
T Consensus 11 nYsG~F~CsW~~~ 23 (82)
T PF10420_consen 11 NYSGNFTCSWKWH 23 (82)
T ss_dssp SSSSEEEEEEEES
T ss_pred cCCccEEEEeccc
Confidence 4556666666543
No 402
>PHA03273 envelope glycoprotein C; Provisional
Probab=22.54 E-value=3e+02 Score=19.74 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=26.6
Q ss_pred ceEEEECCEEeCCCCCCCEEEE--Ee---CCeEEEEEecCC-CCCCeEEEEEeecCC
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLME--TR---GNKHTLTIKNVQ-STDFGNYSCVADNNL 53 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~--~~---~~~~~l~i~~~~-~~d~G~y~C~~~~~~ 53 (115)
.+.||+|+.++........... .. ...+.|++.... .+..-..+|.+....
T Consensus 269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 5899999998873111111111 11 112445454432 233457899987443
No 403
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=21.71 E-value=1.9e+02 Score=17.21 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=6.9
Q ss_pred eEEEEEeec
Q psy3272 43 GNYSCVADN 51 (115)
Q Consensus 43 G~y~C~~~~ 51 (115)
|.|.|.+..
T Consensus 44 ~~~~C~FTY 52 (158)
T PF10572_consen 44 GKYKCTFTY 52 (158)
T ss_pred CceEEEEEE
Confidence 589999864
No 404
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=21.17 E-value=2.1e+02 Score=17.55 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=27.5
Q ss_pred CcceEEEECCEEeCCCC--CCCEE--EEE-eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272 1 MGMMSWYQDTFLIEPSV--SDRRL--MET-RGNKHTLTIKNVQSTDFGNYSCVADNN 52 (115)
Q Consensus 1 ~p~v~W~~~~~~~~~~~--~~~~~--~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~ 52 (115)
.|.|+|--....+.... +-.+. ... ..-.+.+.|....-.+.-.|.|.+...
T Consensus 122 ~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 122 QPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred CCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 47899987665554310 11010 000 011234556666666777899988643
No 405
>PRK09919 anti-adapter protein IraM; Provisional
Probab=21.10 E-value=1.7e+02 Score=16.39 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=18.8
Q ss_pred eEEEECCEEeCCCCCCCEEEE-----EeCCeEEEEEecCCC
Q psy3272 4 MSWYQDTFLIEPSVSDRRLME-----TRGNKHTLTIKNVQS 39 (115)
Q Consensus 4 v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~ 39 (115)
|.||+.+--++. ++.+.+. .......++|-++.+
T Consensus 30 ilWY~~d~~L~p--G~~i~~~~~gvliNdk~~pItIYnvtp 68 (114)
T PRK09919 30 ILWYQADIFLPP--GSIITPVKSGVLLNDKPYPITIYNITP 68 (114)
T ss_pred EEEEeeeEEeCC--CCEEEEcCCeEEECCcEeEEEEEEecc
Confidence 679998776666 5554432 223334455555544
No 406
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=20.62 E-value=2.3e+02 Score=17.79 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=27.0
Q ss_pred ceEEEECCEEeCCCCCCCEEEE--EeC---CeEEEEEec-CCCCCCeEEEEEeecCCc
Q psy3272 3 MMSWYQDTFLIEPSVSDRRLME--TRG---NKHTLTIKN-VQSTDFGNYSCVADNNLG 54 (115)
Q Consensus 3 ~v~W~~~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~-~~~~d~G~y~C~~~~~~~ 54 (115)
.++||.||.+++.. ..+.... ..+ ..+.|.+.. ...+..-..+|.+.-...
T Consensus 8 ~~~Wf~dg~~v~~~-~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~ 64 (211)
T PF02124_consen 8 RFRWFEDGNPVEPR-FIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRD 64 (211)
T ss_pred EEEEEECCEeCCcc-ceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccC
Confidence 57999999987642 1111111 111 124455522 233334678999875443
Done!